Query psy10443
Match_columns 195
No_of_seqs 144 out of 1695
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 18:19:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.2E-41 4.2E-46 239.5 16.9 164 4-181 11-176 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 1E-38 3.5E-43 224.8 20.1 180 1-184 4-183 (212)
3 3oes_A GTPase rhebl1; small GT 100.0 7.9E-39 2.7E-43 223.7 18.8 181 1-195 19-201 (201)
4 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.1E-38 1.4E-42 217.2 21.5 184 3-186 2-185 (186)
5 2atx_A Small GTP binding prote 100.0 8.5E-38 2.9E-42 217.2 21.2 178 5-182 17-194 (194)
6 3reg_A RHO-like small GTPase; 100.0 1.1E-37 3.6E-42 216.8 20.8 172 4-185 21-192 (194)
7 3q3j_B RHO-related GTP-binding 100.0 9.8E-38 3.4E-42 220.1 20.8 183 4-186 25-208 (214)
8 2q3h_A RAS homolog gene family 100.0 1E-37 3.5E-42 218.0 20.5 181 4-184 18-198 (201)
9 1m7b_A RND3/RHOE small GTP-bin 100.0 3.4E-37 1.2E-41 212.5 21.0 179 3-181 4-183 (184)
10 2j1l_A RHO-related GTP-binding 100.0 3.4E-37 1.2E-41 217.4 20.4 180 4-183 32-211 (214)
11 3bwd_D RAC-like GTP-binding pr 100.0 8.5E-38 2.9E-42 215.0 16.9 180 1-182 3-182 (182)
12 4gzl_A RAS-related C3 botulinu 100.0 3.1E-37 1E-41 216.1 19.6 176 4-179 28-203 (204)
13 2fv8_A H6, RHO-related GTP-bin 100.0 1E-36 3.5E-41 213.9 21.9 181 3-183 22-202 (207)
14 3t5g_A GTP-binding protein RHE 100.0 1.2E-36 4.1E-41 209.2 21.3 172 1-186 1-174 (181)
15 1gwn_A RHO-related GTP-binding 100.0 8.4E-37 2.9E-41 214.0 20.3 178 4-181 26-204 (205)
16 2gco_A H9, RHO-related GTP-bin 100.0 2.1E-36 7.2E-41 211.4 22.2 178 4-181 23-200 (201)
17 4dsu_A GTPase KRAS, isoform 2B 100.0 1.2E-36 4E-41 210.4 17.9 177 4-195 2-189 (189)
18 3ihw_A Centg3; RAS, centaurin, 100.0 3.4E-36 1.2E-40 207.6 17.3 165 2-183 16-182 (184)
19 3c5c_A RAS-like protein 12; GD 100.0 5.9E-36 2E-40 206.9 18.4 164 3-181 18-186 (187)
20 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-36 9.5E-41 206.8 15.9 166 1-183 2-171 (178)
21 2bov_A RAla, RAS-related prote 100.0 4.1E-36 1.4E-40 210.5 17.1 164 4-181 12-177 (206)
22 1c1y_A RAS-related protein RAP 100.0 6.1E-36 2.1E-40 202.9 17.0 164 4-180 1-166 (167)
23 3tw8_B RAS-related protein RAB 100.0 1.2E-35 4.3E-40 203.8 18.4 169 4-186 7-176 (181)
24 1u8z_A RAS-related protein RAL 100.0 8.9E-36 3E-40 202.1 16.2 165 3-181 1-167 (168)
25 2fu5_C RAS-related protein RAB 100.0 7.1E-36 2.4E-40 205.6 15.6 168 4-185 6-175 (183)
26 3kkq_A RAS-related protein M-R 100.0 3.7E-35 1.3E-39 202.0 17.8 164 4-181 16-182 (183)
27 1z08_A RAS-related protein RAB 100.0 7.2E-35 2.5E-39 198.2 18.9 165 3-181 3-169 (170)
28 2nzj_A GTP-binding protein REM 100.0 4.9E-35 1.7E-39 199.9 17.2 165 4-182 2-170 (175)
29 2hup_A RAS-related protein RAB 100.0 3.1E-35 1.1E-39 205.5 16.4 167 4-183 27-195 (201)
30 2fn4_A P23, RAS-related protei 100.0 6.4E-35 2.2E-39 200.3 17.5 167 4-184 7-175 (181)
31 2atv_A RERG, RAS-like estrogen 100.0 3E-35 1E-39 204.7 15.8 168 1-183 23-193 (196)
32 2hxs_A RAB-26, RAS-related pro 100.0 3.3E-35 1.1E-39 201.4 15.5 168 3-184 3-176 (178)
33 1kao_A RAP2A; GTP-binding prot 100.0 4.5E-35 1.6E-39 198.4 16.0 163 4-180 1-165 (167)
34 2gf0_A GTP-binding protein DI- 100.0 1.6E-35 5.6E-40 206.4 14.1 166 3-183 5-173 (199)
35 3cpj_B GTP-binding protein YPT 100.0 2.4E-34 8.4E-39 204.0 20.0 167 4-184 11-179 (223)
36 1r2q_A RAS-related protein RAB 100.0 1.1E-34 3.8E-39 197.1 17.6 165 3-181 3-169 (170)
37 1z2a_A RAS-related protein RAB 100.0 1.1E-34 3.9E-39 196.8 17.5 164 4-181 3-167 (168)
38 2g6b_A RAS-related protein RAB 100.0 3.4E-34 1.2E-38 196.6 20.1 167 4-184 8-177 (180)
39 2bcg_Y Protein YP2, GTP-bindin 100.0 2.9E-34 1E-38 201.2 20.1 167 1-181 1-171 (206)
40 2a9k_A RAS-related protein RAL 100.0 3.5E-35 1.2E-39 202.6 14.9 165 4-182 16-182 (187)
41 3q72_A GTP-binding protein RAD 100.0 1.8E-34 6.3E-39 195.5 18.2 163 5-182 1-165 (166)
42 3con_A GTPase NRAS; structural 100.0 2.5E-34 8.6E-39 199.0 19.2 167 3-184 18-186 (190)
43 2ew1_A RAS-related protein RAB 100.0 1.3E-34 4.3E-39 202.3 17.4 165 4-182 24-190 (201)
44 2gf9_A RAS-related protein RAB 100.0 6.2E-34 2.1E-38 197.0 20.7 164 4-181 20-185 (189)
45 2efe_B Small GTP-binding prote 100.0 3.2E-34 1.1E-38 196.9 18.9 167 4-184 10-178 (181)
46 1ky3_A GTP-binding protein YPT 100.0 1.6E-34 5.4E-39 198.5 17.4 167 4-182 6-179 (182)
47 1z0j_A RAB-22, RAS-related pro 100.0 4.2E-34 1.4E-38 194.3 19.0 164 3-180 3-168 (170)
48 2g3y_A GTP-binding protein GEM 100.0 2.8E-34 9.7E-39 201.5 18.4 166 4-183 35-205 (211)
49 2a5j_A RAS-related protein RAB 100.0 2.3E-34 7.9E-39 199.5 17.6 165 4-182 19-185 (191)
50 1z0f_A RAB14, member RAS oncog 100.0 2.9E-34 9.8E-39 196.7 17.7 164 4-181 13-178 (179)
51 2bme_A RAB4A, RAS-related prot 100.0 3.5E-34 1.2E-38 197.6 18.1 166 4-183 8-175 (186)
52 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.9E-34 2E-38 194.9 18.5 165 4-182 5-175 (177)
53 1ek0_A Protein (GTP-binding pr 100.0 3E-34 1E-38 194.9 16.8 167 4-181 1-169 (170)
54 3q85_A GTP-binding protein REM 100.0 3.3E-34 1.1E-38 194.8 16.9 163 6-182 2-168 (169)
55 2wkq_A NPH1-1, RAS-related C3 100.0 1.1E-33 3.8E-38 211.5 21.2 179 4-182 153-331 (332)
56 3clv_A RAB5 protein, putative; 100.0 6.2E-34 2.1E-38 199.1 18.1 165 1-181 2-204 (208)
57 3bc1_A RAS-related protein RAB 100.0 3.2E-34 1.1E-38 198.9 16.2 168 4-185 9-189 (195)
58 2y8e_A RAB-protein 6, GH09086P 100.0 5.2E-34 1.8E-38 195.4 17.1 164 4-181 12-177 (179)
59 2fg5_A RAB-22B, RAS-related pr 100.0 5E-34 1.7E-38 198.0 17.0 165 4-182 21-187 (192)
60 2erx_A GTP-binding protein DI- 100.0 2.3E-34 8E-39 195.9 15.1 164 5-182 2-168 (172)
61 3tkl_A RAS-related protein RAB 100.0 8.1E-34 2.8E-38 197.3 18.1 166 5-184 15-182 (196)
62 2ce2_X GTPase HRAS; signaling 100.0 4.3E-34 1.5E-38 193.3 16.3 163 4-181 1-165 (166)
63 1zbd_A Rabphilin-3A; G protein 100.0 9.7E-34 3.3E-38 198.1 18.2 164 4-181 6-171 (203)
64 2yc2_C IFT27, small RAB-relate 100.0 8.1E-35 2.8E-39 204.1 12.7 169 1-183 15-194 (208)
65 2o52_A RAS-related protein RAB 100.0 3.6E-34 1.2E-38 200.0 15.7 166 4-183 23-190 (200)
66 1g16_A RAS-related protein SEC 100.0 6.8E-34 2.3E-38 193.3 16.7 163 5-182 2-166 (170)
67 2p5s_A RAS and EF-hand domain 100.0 2.9E-34 9.9E-39 200.2 15.1 171 3-181 25-197 (199)
68 3cbq_A GTP-binding protein REM 100.0 3.1E-34 1E-38 199.5 15.1 166 4-183 21-190 (195)
69 2il1_A RAB12; G-protein, GDP, 100.0 2.4E-34 8.1E-39 199.6 14.4 165 4-181 24-190 (192)
70 2oil_A CATX-8, RAS-related pro 100.0 1E-33 3.4E-38 196.5 17.4 165 4-182 23-189 (193)
71 1z06_A RAS-related protein RAB 100.0 7.2E-34 2.4E-38 196.7 16.6 164 3-180 17-187 (189)
72 3th5_A RAS-related C3 botulinu 100.0 4.8E-37 1.6E-41 215.1 0.0 176 4-179 28-203 (204)
73 1vg8_A RAS-related protein RAB 100.0 1.9E-33 6.4E-38 197.1 18.2 164 4-181 6-175 (207)
74 3dz8_A RAS-related protein RAB 100.0 9.3E-35 3.2E-39 201.5 11.1 166 4-183 21-188 (191)
75 1x3s_A RAS-related protein RAB 100.0 3.2E-33 1.1E-37 194.1 18.8 165 4-183 13-180 (195)
76 3t1o_A Gliding protein MGLA; G 100.0 4.4E-34 1.5E-38 198.7 11.8 164 4-183 12-194 (198)
77 2f7s_A C25KG, RAS-related prot 100.0 5.4E-34 1.9E-38 201.3 12.2 165 4-182 23-200 (217)
78 4bas_A ADP-ribosylation factor 100.0 3.8E-33 1.3E-37 194.3 14.6 170 4-187 15-195 (199)
79 2cjw_A GTP-binding protein GEM 100.0 2.5E-32 8.4E-37 189.5 18.4 165 4-182 4-173 (192)
80 3cph_A RAS-related protein SEC 100.0 1.5E-32 5.2E-37 193.3 17.6 163 4-181 18-182 (213)
81 3l0i_B RAS-related protein RAB 100.0 2.2E-34 7.5E-39 200.8 7.5 164 4-181 31-196 (199)
82 1f6b_A SAR1; gtpases, N-termin 100.0 2.7E-32 9.1E-37 190.2 16.2 157 4-179 23-197 (198)
83 3gj0_A GTP-binding nuclear pro 100.0 2.5E-33 8.4E-38 198.5 11.0 164 4-183 13-177 (221)
84 1zj6_A ADP-ribosylation factor 100.0 5.1E-32 1.7E-36 187.0 16.9 165 3-186 13-183 (187)
85 4djt_A GTP-binding nuclear pro 100.0 8E-33 2.7E-37 195.5 12.8 167 4-184 9-178 (218)
86 1m2o_B GTP-binding protein SAR 100.0 1.1E-31 3.6E-36 186.0 17.4 156 4-178 21-189 (190)
87 2h57_A ADP-ribosylation factor 100.0 1.1E-31 3.9E-36 185.7 16.4 161 4-182 19-188 (190)
88 1zd9_A ADP-ribosylation factor 100.0 3.1E-32 1.1E-36 188.3 13.0 161 4-182 20-186 (188)
89 1upt_A ARL1, ADP-ribosylation 100.0 1.6E-31 5.4E-36 181.8 15.7 164 4-182 5-170 (171)
90 1ksh_A ARF-like protein 2; sma 100.0 4.5E-31 1.5E-35 182.1 17.5 160 4-182 16-181 (186)
91 1r8s_A ADP-ribosylation factor 100.0 1.8E-32 6.1E-37 185.3 9.7 155 7-181 1-162 (164)
92 2h17_A ADP-ribosylation factor 100.0 2E-31 6.7E-36 183.2 14.8 156 4-178 19-180 (181)
93 3llu_A RAS-related GTP-binding 100.0 2E-31 6.7E-36 185.5 14.0 165 4-179 18-195 (196)
94 2x77_A ADP-ribosylation factor 100.0 2.4E-31 8.1E-36 183.9 13.5 164 4-182 20-185 (189)
95 2b6h_A ADP-ribosylation factor 100.0 7.7E-32 2.6E-36 187.0 10.7 159 3-181 26-191 (192)
96 1fzq_A ADP-ribosylation factor 100.0 2.6E-31 8.8E-36 182.7 13.0 159 4-181 14-178 (181)
97 1moz_A ARL1, ADP-ribosylation 100.0 5.7E-31 2E-35 181.0 14.0 159 4-181 16-180 (183)
98 2fh5_B SR-beta, signal recogni 100.0 4.9E-31 1.7E-35 185.8 11.5 174 3-178 4-213 (214)
99 2zej_A Dardarin, leucine-rich 100.0 1.8E-31 6.2E-36 183.9 8.8 168 6-183 2-180 (184)
100 2lkc_A Translation initiation 100.0 4.2E-29 1.4E-33 170.9 19.4 160 4-184 6-174 (178)
101 2f9l_A RAB11B, member RAS onco 100.0 2.9E-29 9.9E-34 174.9 18.6 164 4-181 3-168 (199)
102 3c5h_A Glucocorticoid receptor 100.0 4.1E-30 1.4E-34 185.5 13.1 162 4-180 17-254 (255)
103 3o47_A ADP-ribosylation factor 100.0 5.9E-31 2E-35 196.2 7.7 161 4-182 163-328 (329)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 6.6E-30 2.2E-34 189.0 13.1 168 5-182 2-182 (307)
105 1oix_A RAS-related protein RAB 100.0 2.1E-28 7.3E-33 169.5 19.2 161 5-179 28-190 (191)
106 3r7w_B Gtpase2, GTP-binding pr 100.0 2E-30 7E-35 190.3 8.0 164 8-183 1-176 (331)
107 2wji_A Ferrous iron transport 100.0 6.9E-29 2.3E-33 168.1 12.8 154 4-179 1-163 (165)
108 3lvq_E ARF-GAP with SH3 domain 100.0 1.9E-28 6.4E-33 192.3 15.2 164 4-185 320-488 (497)
109 2qu8_A Putative nucleolar GTP- 100.0 2.5E-28 8.4E-33 173.6 12.5 166 4-183 27-207 (228)
110 3dpu_A RAB family protein; roc 100.0 4.7E-29 1.6E-33 197.1 9.6 166 2-184 37-211 (535)
111 2dyk_A GTP-binding protein; GT 100.0 5.1E-28 1.8E-32 162.8 11.5 150 7-179 2-160 (161)
112 3pqc_A Probable GTP-binding pr 100.0 4.1E-28 1.4E-32 168.2 10.5 161 4-181 21-194 (195)
113 1svi_A GTP-binding protein YSX 100.0 2.5E-28 8.4E-33 169.5 9.3 160 4-180 21-194 (195)
114 2cxx_A Probable GTP-binding pr 99.9 2.4E-28 8.1E-33 168.8 6.2 158 7-184 2-187 (190)
115 3a1s_A Iron(II) transport prot 99.9 6E-27 2E-31 169.0 13.7 156 4-181 3-167 (258)
116 2gj8_A MNME, tRNA modification 99.9 4.3E-28 1.5E-32 165.3 7.2 153 4-180 2-165 (172)
117 2wjg_A FEOB, ferrous iron tran 99.9 2.3E-27 8E-32 163.6 10.6 160 2-183 3-171 (188)
118 3iev_A GTP-binding protein ERA 99.9 2.6E-26 9E-31 169.7 15.9 164 3-182 7-183 (308)
119 3b1v_A Ferrous iron uptake tra 99.9 2.7E-27 9.3E-32 171.8 9.2 153 5-180 2-163 (272)
120 3i8s_A Ferrous iron transport 99.9 2E-27 7E-32 173.0 8.2 157 4-182 1-170 (274)
121 1wf3_A GTP-binding protein; GT 99.9 4.4E-26 1.5E-30 167.7 14.8 159 4-181 5-173 (301)
122 4dhe_A Probable GTP-binding pr 99.9 7.7E-27 2.7E-31 165.2 9.5 166 4-185 27-215 (223)
123 3iby_A Ferrous iron transport 99.9 6.4E-27 2.2E-31 168.6 8.3 150 7-178 2-164 (256)
124 3gee_A MNME, tRNA modification 99.9 3.7E-25 1.3E-29 171.5 15.6 156 5-180 232-397 (476)
125 3k53_A Ferrous iron transport 99.9 1E-25 3.4E-30 164.0 11.4 158 4-182 1-167 (271)
126 2hjg_A GTP-binding protein ENG 99.9 4.6E-26 1.6E-30 175.9 8.5 159 5-181 174-349 (436)
127 4dcu_A GTP-binding protein ENG 99.9 9.6E-26 3.3E-30 175.0 10.0 161 4-182 193-370 (456)
128 1nrj_B SR-beta, signal recogni 99.9 1.8E-26 6.3E-31 162.8 5.5 148 4-167 10-170 (218)
129 3sjy_A Translation initiation 99.9 7.9E-25 2.7E-29 167.4 13.8 172 2-185 4-196 (403)
130 1xzp_A Probable tRNA modificat 99.9 5.6E-25 1.9E-29 170.6 10.5 151 6-180 243-404 (482)
131 3qq5_A Small GTP-binding prote 99.9 1.2E-25 4E-30 171.7 6.2 157 4-182 32-197 (423)
132 1mky_A Probable GTP-binding pr 99.9 2E-24 6.7E-29 166.9 12.9 153 8-182 3-167 (439)
133 1s0u_A EIF-2-gamma, translatio 99.9 1.8E-23 6.1E-28 160.2 16.3 172 1-184 3-201 (408)
134 2e87_A Hypothetical protein PH 99.9 4.6E-23 1.6E-27 155.4 17.9 161 4-182 165-337 (357)
135 3izy_P Translation initiation 99.9 2.1E-25 7.3E-30 174.3 4.5 162 4-182 2-169 (537)
136 2ywe_A GTP-binding protein LEP 99.9 1.1E-23 3.9E-28 166.6 14.3 167 1-185 1-188 (600)
137 3geh_A MNME, tRNA modification 99.9 3.6E-24 1.2E-28 165.4 10.3 154 5-183 223-386 (462)
138 3cb4_D GTP-binding protein LEP 99.9 6.4E-24 2.2E-28 168.2 11.9 164 5-186 3-187 (599)
139 2xtz_A Guanine nucleotide-bind 99.9 8.4E-24 2.9E-28 158.2 11.6 130 52-182 181-346 (354)
140 1cip_A Protein (guanine nucleo 99.9 5.5E-24 1.9E-28 159.2 10.5 130 53-183 192-346 (353)
141 2c78_A Elongation factor TU-A; 99.9 1.9E-23 6.5E-28 159.9 13.5 168 3-184 8-215 (405)
142 1ega_A Protein (GTP-binding pr 99.9 4.7E-23 1.6E-27 151.8 14.9 159 4-181 6-175 (301)
143 1wb1_A Translation elongation 99.9 1.4E-23 4.9E-28 163.4 12.8 163 3-181 16-189 (482)
144 1lnz_A SPO0B-associated GTP-bi 99.9 3.7E-24 1.3E-28 159.6 8.8 159 8-184 160-333 (342)
145 2xtp_A GTPase IMAP family memb 99.9 3.9E-23 1.3E-27 149.5 13.6 169 4-181 20-208 (260)
146 2hjg_A GTP-binding protein ENG 99.9 1.6E-24 5.5E-29 167.3 5.5 154 6-182 3-166 (436)
147 1mky_A Probable GTP-binding pr 99.9 1E-22 3.6E-27 157.3 14.8 159 5-181 179-355 (439)
148 1d2e_A Elongation factor TU (E 99.9 1.5E-22 5E-27 154.5 14.3 167 5-184 2-198 (397)
149 1kk1_A EIF2gamma; initiation o 99.9 8.7E-23 3E-27 156.5 12.8 170 3-184 7-203 (410)
150 3ohm_A Guanine nucleotide-bind 99.9 2.3E-23 7.9E-28 153.8 8.8 131 53-184 166-321 (327)
151 3tr5_A RF-3, peptide chain rel 99.9 5.5E-22 1.9E-26 155.6 15.0 115 5-125 12-149 (528)
152 4fid_A G protein alpha subunit 99.9 3E-22 1E-26 148.3 12.6 129 53-181 160-328 (340)
153 1zcb_A G alpha I/13; GTP-bindi 99.9 1.6E-22 5.4E-27 151.8 11.0 129 53-182 200-354 (362)
154 3lxx_A GTPase IMAP family memb 99.9 6.8E-22 2.3E-26 141.3 13.5 166 4-181 27-214 (239)
155 3j2k_7 ERF3, eukaryotic polype 99.9 4.3E-22 1.5E-26 153.6 13.3 159 4-173 15-217 (439)
156 1jny_A EF-1-alpha, elongation 99.9 2.9E-23 1E-27 160.1 5.4 162 1-172 1-204 (435)
157 3t5d_A Septin-7; GTP-binding p 99.9 6.1E-23 2.1E-27 149.5 6.8 163 3-180 5-203 (274)
158 1g7s_A Translation initiation 99.9 9.7E-22 3.3E-26 155.9 13.8 172 3-181 2-218 (594)
159 2ged_A SR-beta, signal recogni 99.9 1.5E-22 5.2E-27 140.0 7.9 113 4-125 46-171 (193)
160 3lxw_A GTPase IMAP family memb 99.9 2.6E-21 8.8E-26 138.8 14.1 168 3-182 18-209 (247)
161 3avx_A Elongation factor TS, e 99.9 8.8E-22 3E-26 163.3 13.0 168 4-184 294-489 (1289)
162 1zo1_I IF2, translation initia 99.9 3.7E-23 1.3E-27 160.5 4.5 161 4-178 2-164 (501)
163 2qtf_A Protein HFLX, GTP-bindi 99.9 2.2E-21 7.6E-26 146.0 13.4 163 6-183 178-356 (364)
164 1zun_B Sulfate adenylate trans 99.9 1.6E-21 5.3E-26 150.5 12.2 156 4-171 22-214 (434)
165 3p26_A Elongation factor 1 alp 99.9 2.7E-21 9.3E-26 151.0 13.1 156 4-170 31-227 (483)
166 4dcu_A GTP-binding protein ENG 99.9 1.1E-22 3.9E-27 157.8 5.1 156 4-182 21-186 (456)
167 1f60_A Elongation factor EEF1A 99.9 4.9E-21 1.7E-25 148.4 13.9 156 1-170 1-201 (458)
168 2qag_A Septin-2, protein NEDD5 99.9 8.1E-23 2.8E-27 153.9 3.2 163 5-182 36-234 (361)
169 1r5b_A Eukaryotic peptide chai 99.9 7.1E-22 2.4E-26 153.4 7.8 158 3-172 40-243 (467)
170 3izq_1 HBS1P, elongation facto 99.9 4.7E-21 1.6E-25 152.8 11.8 156 4-171 165-362 (611)
171 2elf_A Protein translation elo 99.8 3.5E-21 1.2E-25 145.2 9.4 150 8-182 23-181 (370)
172 1pui_A ENGB, probable GTP-bind 99.8 1.1E-20 3.7E-25 132.4 10.6 161 4-181 24-199 (210)
173 2aka_B Dynamin-1; fusion prote 99.8 9.5E-22 3.3E-26 144.9 3.1 159 5-178 25-250 (299)
174 3mca_A HBS1, elongation factor 99.8 1.9E-21 6.6E-26 154.6 4.3 164 4-180 175-396 (592)
175 2h5e_A Peptide chain release f 99.8 1.3E-19 4.5E-24 142.3 14.4 116 5-126 12-150 (529)
176 2dy1_A Elongation factor G; tr 99.8 6.7E-20 2.3E-24 147.7 11.8 116 4-123 7-139 (665)
177 3def_A T7I23.11 protein; chlor 99.8 6.2E-20 2.1E-24 132.8 10.6 119 4-125 34-166 (262)
178 1u0l_A Probable GTPase ENGC; p 99.8 3.6E-20 1.2E-24 136.5 6.4 135 21-177 32-169 (301)
179 1dar_A EF-G, elongation factor 99.8 6.8E-19 2.3E-23 142.4 13.9 116 4-126 10-145 (691)
180 2qnr_A Septin-2, protein NEDD5 99.8 1.3E-20 4.4E-25 138.7 3.5 164 5-184 17-217 (301)
181 1azs_C GS-alpha; complex (lyas 99.8 3.4E-19 1.2E-23 134.8 10.5 148 32-182 187-386 (402)
182 2j69_A Bacterial dynamin-like 99.8 3.2E-19 1.1E-23 144.4 10.8 172 5-182 68-326 (695)
183 2rdo_7 EF-G, elongation factor 99.8 2.1E-18 7.3E-23 139.7 15.3 118 4-126 8-150 (704)
184 1h65_A Chloroplast outer envel 99.8 9.3E-19 3.2E-23 127.2 11.4 120 4-126 37-170 (270)
185 2xex_A Elongation factor G; GT 99.8 2.4E-18 8.3E-23 139.2 14.6 116 4-125 8-142 (693)
186 2qag_C Septin-7; cell cycle, c 99.8 9.6E-19 3.3E-23 133.4 11.3 162 5-180 30-226 (418)
187 1udx_A The GTP-binding protein 99.8 4.2E-18 1.4E-22 129.8 12.8 159 8-184 159-328 (416)
188 1jwy_B Dynamin A GTPase domain 99.8 2.1E-19 7.3E-24 133.3 4.6 112 54-181 131-262 (315)
189 3t34_A Dynamin-related protein 99.8 2.1E-19 7.2E-24 135.6 4.5 104 55-174 137-254 (360)
190 1wxq_A GTP-binding protein; st 99.8 2.5E-18 8.5E-23 130.7 10.3 84 7-90 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 1.7E-17 6E-22 116.9 10.8 156 5-183 29-216 (221)
192 2x2e_A Dynamin-1; nitration, h 99.7 2.9E-19 1E-23 134.4 -1.3 158 5-177 30-254 (353)
193 3vqt_A RF-3, peptide chain rel 99.7 2.4E-16 8.2E-21 124.4 15.0 116 5-126 30-168 (548)
194 2hf9_A Probable hydrogenase ni 99.7 2E-18 6.7E-23 122.2 2.6 154 5-181 37-224 (226)
195 3p32_A Probable GTPase RV1496/ 99.7 1.7E-17 5.7E-22 124.9 6.6 107 54-181 172-284 (355)
196 1n0u_A EF-2, elongation factor 99.7 6.8E-17 2.3E-21 133.2 8.2 117 4-124 17-164 (842)
197 1jal_A YCHF protein; nucleotid 99.7 2.7E-15 9.3E-20 112.2 14.8 83 7-89 3-108 (363)
198 2www_A Methylmalonic aciduria 99.6 7.8E-17 2.7E-21 120.8 4.6 103 54-180 167-278 (349)
199 2qpt_A EH domain-containing pr 99.6 1.1E-16 3.8E-21 126.4 5.6 119 5-126 64-234 (550)
200 3j25_A Tetracycline resistance 99.6 7.8E-17 2.7E-21 129.4 4.5 177 7-187 3-245 (638)
201 1yrb_A ATP(GTP)binding protein 99.6 9.4E-16 3.2E-20 110.8 8.1 126 54-180 109-256 (262)
202 4fn5_A EF-G 1, elongation fact 99.6 1.2E-14 3.9E-19 118.3 13.7 115 7-125 14-152 (709)
203 2dby_A GTP-binding protein; GD 99.6 8.9E-15 3E-19 110.0 11.2 83 7-89 2-111 (368)
204 2p67_A LAO/AO transport system 99.6 5.2E-16 1.8E-20 116.2 3.9 106 54-180 149-260 (341)
205 3zvr_A Dynamin-1; hydrolase, D 99.5 2.7E-15 9.2E-20 121.3 4.8 157 6-178 51-275 (772)
206 3l82_B F-box only protein 4; T 99.5 1.4E-15 4.8E-20 104.1 2.2 111 61-183 109-225 (227)
207 4a9a_A Ribosome-interacting GT 99.5 9.9E-14 3.4E-18 104.3 10.8 115 7-123 73-195 (376)
208 2yv5_A YJEQ protein; hydrolase 99.5 9E-14 3.1E-18 102.3 10.0 98 64-177 66-165 (302)
209 2qm8_A GTPase/ATPase; G protei 99.4 4.5E-13 1.5E-17 100.0 9.0 104 54-180 148-260 (337)
210 3l2o_B F-box only protein 4; s 99.4 3.5E-14 1.2E-18 101.8 1.7 112 61-183 194-310 (312)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 2.3E-13 7.9E-18 102.7 3.6 88 5-92 21-131 (396)
212 3h2y_A GTPase family protein; 99.1 5.3E-11 1.8E-15 89.8 6.0 98 63-179 55-158 (368)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 1.9E-10 6.5E-15 86.8 5.4 98 63-179 57-160 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 1.4E-09 4.9E-14 82.9 10.1 116 7-127 43-193 (427)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 6.4E-10 2.2E-14 84.2 7.2 85 5-89 19-127 (392)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 3.4E-11 1.2E-15 90.9 0.1 112 6-126 162-290 (369)
217 3sop_A Neuronal-specific septi 99.0 2.9E-09 9.8E-14 77.0 9.2 117 6-127 2-157 (270)
218 2j37_W Signal recognition part 98.9 1.8E-10 6.3E-15 89.8 2.1 152 4-178 99-310 (504)
219 3h2y_A GTPase family protein; 98.9 7.7E-11 2.6E-15 88.9 -0.2 112 6-126 160-289 (368)
220 1puj_A YLQF, conserved hypothe 98.9 1.5E-09 5.3E-14 78.9 4.3 101 58-180 3-105 (282)
221 1tq4_A IIGP1, interferon-induc 98.8 3.3E-08 1.1E-12 75.4 9.8 167 6-183 69-255 (413)
222 1puj_A YLQF, conserved hypothe 98.6 5.4E-08 1.8E-12 70.8 5.8 57 4-65 118-176 (282)
223 3dm5_A SRP54, signal recogniti 98.6 9.1E-08 3.1E-12 73.4 5.9 115 5-125 99-254 (443)
224 3cnl_A YLQF, putative uncharac 98.5 5E-08 1.7E-12 70.2 3.9 56 7-66 100-156 (262)
225 1f5n_A Interferon-induced guan 98.5 1.2E-07 4.2E-12 75.3 5.8 63 4-66 36-103 (592)
226 1t9h_A YLOQ, probable GTPase E 98.5 1E-07 3.5E-12 69.9 4.6 95 66-173 75-169 (307)
227 3cnl_A YLQF, putative uncharac 98.5 8.4E-08 2.9E-12 69.0 3.8 94 61-178 4-98 (262)
228 2v3c_C SRP54, signal recogniti 98.4 1.8E-06 6.2E-11 66.4 9.3 111 5-124 98-252 (432)
229 3kl4_A SRP54, signal recogniti 98.3 3.1E-07 1.1E-11 70.4 2.5 23 5-27 96-118 (433)
230 1bif_A 6-phosphofructo-2-kinas 98.2 4E-08 1.4E-12 76.6 -3.8 113 4-121 37-160 (469)
231 3szr_A Interferon-induced GTP- 98.1 2E-06 6.8E-11 69.1 4.8 23 8-30 47-69 (608)
232 2rcn_A Probable GTPase ENGC; Y 98.1 1.2E-05 4.1E-10 60.2 8.2 83 75-175 128-213 (358)
233 1j8m_F SRP54, signal recogniti 98.1 3.7E-06 1.3E-10 61.5 5.1 91 54-170 181-280 (297)
234 3q5d_A Atlastin-1; G protein, 97.8 3.5E-05 1.2E-09 59.4 6.0 24 5-28 66-89 (447)
235 3asz_A Uridine kinase; cytidin 97.7 2E-05 7E-10 54.5 3.2 28 1-28 1-28 (211)
236 2j41_A Guanylate kinase; GMP, 97.6 3.4E-05 1.2E-09 53.1 3.2 30 1-30 1-30 (207)
237 1qf9_A UMP/CMP kinase, protein 97.6 5.6E-05 1.9E-09 51.3 3.9 28 1-28 1-28 (194)
238 1y63_A LMAJ004144AAA protein; 97.6 5.4E-05 1.9E-09 51.3 3.6 29 1-29 5-33 (184)
239 1ye8_A Protein THEP1, hypothet 97.6 4.2E-05 1.4E-09 51.7 3.0 23 7-29 1-23 (178)
240 4eun_A Thermoresistant glucoki 97.5 5E-05 1.7E-09 52.2 3.2 26 3-28 26-51 (200)
241 1kgd_A CASK, peripheral plasma 97.5 4.8E-05 1.6E-09 51.4 2.8 23 7-29 6-28 (180)
242 3ney_A 55 kDa erythrocyte memb 97.5 6.7E-05 2.3E-09 51.4 3.4 26 4-29 17-42 (197)
243 1nn5_A Similar to deoxythymidy 97.5 6.1E-05 2.1E-09 52.1 3.2 28 1-28 4-31 (215)
244 2plr_A DTMP kinase, probable t 97.5 7.6E-05 2.6E-09 51.5 3.6 25 4-28 2-26 (213)
245 1knq_A Gluconate kinase; ALFA/ 97.5 9.8E-05 3.3E-09 49.5 3.8 25 4-28 6-30 (175)
246 1lvg_A Guanylate kinase, GMP k 97.5 6E-05 2.1E-09 51.8 2.8 22 7-28 5-26 (198)
247 1via_A Shikimate kinase; struc 97.5 6E-05 2.1E-09 50.6 2.7 26 1-28 1-26 (175)
248 1zp6_A Hypothetical protein AT 97.4 9.7E-05 3.3E-09 50.2 3.7 26 4-29 7-32 (191)
249 1t9h_A YLOQ, probable GTPase E 97.4 6.2E-05 2.1E-09 55.2 2.5 23 7-29 174-196 (307)
250 1ex7_A Guanylate kinase; subst 97.4 0.00011 3.7E-09 50.0 2.9 21 9-29 4-24 (186)
251 1cke_A CK, MSSA, protein (cyti 97.4 0.00012 4.1E-09 51.2 3.3 23 6-28 5-27 (227)
252 3a00_A Guanylate kinase, GMP k 97.3 9.8E-05 3.3E-09 50.1 2.7 21 9-29 4-24 (186)
253 3c8u_A Fructokinase; YP_612366 97.3 0.00014 4.8E-09 50.3 3.4 25 4-28 20-44 (208)
254 3tr0_A Guanylate kinase, GMP k 97.3 0.00011 3.6E-09 50.5 2.8 24 6-29 7-30 (205)
255 1kht_A Adenylate kinase; phosp 97.3 0.00013 4.6E-09 49.4 3.2 24 5-28 2-25 (192)
256 1zd8_A GTP:AMP phosphotransfer 97.3 0.00013 4.3E-09 51.2 3.1 28 1-28 1-29 (227)
257 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5.3E-09 49.2 3.4 24 5-28 2-25 (196)
258 1s96_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 51.2 2.8 23 7-29 17-39 (219)
259 4gp7_A Metallophosphoesterase; 97.3 0.00012 4.1E-09 49.0 2.7 20 8-27 11-30 (171)
260 3cm0_A Adenylate kinase; ATP-b 97.3 0.00018 6.1E-09 48.6 3.4 24 5-28 3-26 (186)
261 1z6g_A Guanylate kinase; struc 97.3 0.00013 4.5E-09 50.9 2.7 23 7-29 24-46 (218)
262 2yv5_A YJEQ protein; hydrolase 97.3 0.00045 1.5E-08 50.6 5.7 21 7-27 166-186 (302)
263 3tau_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 50.3 2.8 24 6-29 8-31 (208)
264 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 6E-09 50.2 3.3 25 4-28 2-26 (220)
265 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 50.3 2.7 22 8-29 22-43 (207)
266 1ly1_A Polynucleotide kinase; 97.3 0.0002 6.9E-09 48.0 3.4 22 7-28 3-24 (181)
267 2v54_A DTMP kinase, thymidylat 97.2 0.0002 7E-09 49.0 3.4 25 5-29 3-27 (204)
268 3iij_A Coilin-interacting nucl 97.2 0.0002 6.9E-09 48.2 3.3 25 4-28 9-33 (180)
269 2cdn_A Adenylate kinase; phosp 97.2 0.00024 8.2E-09 48.7 3.7 25 4-28 18-42 (201)
270 4dzz_A Plasmid partitioning pr 97.2 0.00011 3.8E-09 50.4 2.0 65 54-123 76-143 (206)
271 2bbw_A Adenylate kinase 4, AK4 97.2 0.00021 7E-09 50.7 3.4 23 5-27 26-48 (246)
272 3tlx_A Adenylate kinase 2; str 97.2 0.00025 8.6E-09 50.3 3.8 25 4-28 27-51 (243)
273 2qor_A Guanylate kinase; phosp 97.2 0.00016 5.6E-09 49.7 2.8 24 6-29 12-35 (204)
274 1qhx_A CPT, protein (chloramph 97.2 0.00022 7.5E-09 47.8 3.3 24 6-29 3-26 (178)
275 3trf_A Shikimate kinase, SK; a 97.2 0.00024 8.2E-09 47.9 3.3 23 6-28 5-27 (185)
276 3uie_A Adenylyl-sulfate kinase 97.2 0.00016 5.6E-09 49.6 2.4 25 4-28 23-47 (200)
277 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.2E-09 47.5 2.9 21 8-28 3-23 (173)
278 3vaa_A Shikimate kinase, SK; s 97.2 0.00023 7.9E-09 48.8 3.2 23 6-28 25-47 (199)
279 1kag_A SKI, shikimate kinase I 97.2 0.0002 6.9E-09 47.7 2.8 23 7-29 5-27 (173)
280 3lw7_A Adenylate kinase relate 97.2 0.00021 7.2E-09 47.6 2.9 20 7-26 2-21 (179)
281 2rhm_A Putative kinase; P-loop 97.2 0.00028 9.4E-09 47.9 3.5 24 5-28 4-27 (193)
282 1uj2_A Uridine-cytidine kinase 97.2 0.00026 8.8E-09 50.5 3.4 27 2-28 18-44 (252)
283 2wwf_A Thymidilate kinase, put 97.2 0.0003 1E-08 48.5 3.5 25 4-28 8-32 (212)
284 3tif_A Uncharacterized ABC tra 97.2 0.00023 7.7E-09 50.3 2.9 22 8-29 33-54 (235)
285 3t61_A Gluconokinase; PSI-biol 97.2 0.00023 7.8E-09 48.8 2.9 22 7-28 19-40 (202)
286 1htw_A HI0065; nucleotide-bind 97.2 0.00023 7.8E-09 47.0 2.7 24 7-30 34-57 (158)
287 3fb4_A Adenylate kinase; psych 97.2 0.00024 8.3E-09 49.2 3.0 22 7-28 1-22 (216)
288 1ukz_A Uridylate kinase; trans 97.1 0.00038 1.3E-08 47.7 4.0 25 4-28 13-37 (203)
289 1gvn_B Zeta; postsegregational 97.1 0.00035 1.2E-08 50.8 3.9 25 4-28 31-55 (287)
290 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 49.1 3.1 22 7-28 1-22 (216)
291 2bdt_A BH3686; alpha-beta prot 97.1 0.00024 8.1E-09 48.2 2.7 21 8-28 4-24 (189)
292 3sr0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 48.6 3.1 23 7-29 1-23 (206)
293 2rcn_A Probable GTPase ENGC; Y 97.1 0.00027 9.4E-09 52.9 3.0 23 8-30 217-239 (358)
294 2vli_A Antibiotic resistance p 97.1 0.00022 7.5E-09 48.0 2.3 25 4-28 3-27 (183)
295 2pcj_A ABC transporter, lipopr 97.1 0.00028 9.7E-09 49.4 2.8 22 8-29 32-53 (224)
296 3be4_A Adenylate kinase; malar 97.1 0.00031 1.1E-08 48.8 3.0 25 4-28 3-27 (217)
297 2jaq_A Deoxyguanosine kinase; 97.1 0.00032 1.1E-08 48.0 3.0 21 8-28 2-22 (205)
298 1vht_A Dephospho-COA kinase; s 97.1 0.00043 1.5E-08 48.1 3.6 24 5-28 3-26 (218)
299 1nks_A Adenylate kinase; therm 97.1 0.00034 1.2E-08 47.3 3.0 21 8-28 3-23 (194)
300 1np6_A Molybdopterin-guanine d 97.1 0.00032 1.1E-08 47.1 2.8 22 8-29 8-29 (174)
301 2onk_A Molybdate/tungstate ABC 97.1 0.00034 1.1E-08 49.5 3.0 22 8-29 26-47 (240)
302 2i3b_A HCR-ntpase, human cance 97.1 0.00029 9.9E-09 48.0 2.6 21 8-28 3-23 (189)
303 2c95_A Adenylate kinase 1; tra 97.0 0.0004 1.4E-08 47.2 3.3 24 5-28 8-31 (196)
304 2yvu_A Probable adenylyl-sulfa 97.0 0.00051 1.8E-08 46.4 3.8 25 4-28 11-35 (186)
305 1sgw_A Putative ABC transporte 97.0 0.00036 1.2E-08 48.5 3.0 22 8-29 37-58 (214)
306 1b0u_A Histidine permease; ABC 97.0 0.00036 1.2E-08 50.1 3.0 22 8-29 34-55 (262)
307 1uf9_A TT1252 protein; P-loop, 97.0 0.00044 1.5E-08 47.3 3.3 26 4-29 6-31 (203)
308 3aez_A Pantothenate kinase; tr 97.0 0.00049 1.7E-08 50.7 3.7 25 4-28 88-112 (312)
309 3gfo_A Cobalt import ATP-bindi 97.0 0.00036 1.2E-08 50.4 3.0 22 8-29 36-57 (275)
310 1zak_A Adenylate kinase; ATP:A 97.0 0.00035 1.2E-08 48.7 2.8 25 4-28 3-27 (222)
311 2cbz_A Multidrug resistance-as 97.0 0.00036 1.2E-08 49.3 2.9 22 8-29 33-54 (237)
312 2if2_A Dephospho-COA kinase; a 97.0 0.00037 1.2E-08 47.8 2.8 22 7-28 2-23 (204)
313 3ec2_A DNA replication protein 97.0 0.00032 1.1E-08 47.2 2.5 24 6-29 38-61 (180)
314 2qt1_A Nicotinamide riboside k 97.0 0.00058 2E-08 47.0 3.8 25 5-29 20-44 (207)
315 1odf_A YGR205W, hypothetical 3 97.0 0.00053 1.8E-08 49.9 3.7 25 4-28 29-53 (290)
316 1e4v_A Adenylate kinase; trans 97.0 0.00039 1.3E-08 48.1 3.0 22 7-28 1-22 (214)
317 3lnc_A Guanylate kinase, GMP k 97.0 0.00027 9.3E-09 49.6 2.1 24 6-29 27-51 (231)
318 4g1u_C Hemin import ATP-bindin 97.0 0.0004 1.4E-08 50.0 3.0 22 8-29 39-60 (266)
319 1g6h_A High-affinity branched- 97.0 0.0004 1.4E-08 49.7 2.9 22 8-29 35-56 (257)
320 1mv5_A LMRA, multidrug resista 97.0 0.00045 1.6E-08 49.0 3.2 22 8-29 30-51 (243)
321 1jjv_A Dephospho-COA kinase; P 97.0 0.00051 1.7E-08 47.2 3.4 22 7-28 3-24 (206)
322 2ff7_A Alpha-hemolysin translo 97.0 0.00045 1.5E-08 49.1 3.1 22 8-29 37-58 (247)
323 2pze_A Cystic fibrosis transme 97.0 0.00044 1.5E-08 48.6 3.0 22 8-29 36-57 (229)
324 2olj_A Amino acid ABC transpor 97.0 0.00043 1.5E-08 49.7 3.0 22 8-29 52-73 (263)
325 2v9p_A Replication protein E1; 97.0 0.00042 1.4E-08 50.8 2.9 23 6-28 126-148 (305)
326 2jeo_A Uridine-cytidine kinase 97.0 0.00054 1.9E-08 48.5 3.4 25 4-28 23-47 (245)
327 1ji0_A ABC transporter; ATP bi 97.0 0.00044 1.5E-08 48.9 2.9 22 8-29 34-55 (240)
328 2eyu_A Twitching motility prot 97.0 0.00041 1.4E-08 49.8 2.7 22 7-28 26-47 (261)
329 3tqc_A Pantothenate kinase; bi 96.9 0.00063 2.2E-08 50.2 3.7 25 4-28 90-114 (321)
330 3b85_A Phosphate starvation-in 96.9 0.00037 1.3E-08 48.2 2.4 22 8-29 24-45 (208)
331 1vpl_A ABC transporter, ATP-bi 96.9 0.00047 1.6E-08 49.3 3.0 22 8-29 43-64 (256)
332 2qi9_C Vitamin B12 import ATP- 96.9 0.00048 1.6E-08 49.0 3.0 22 8-29 28-49 (249)
333 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00048 1.6E-08 49.1 2.9 22 8-29 31-52 (250)
334 2p5t_B PEZT; postsegregational 96.9 0.00045 1.5E-08 49.3 2.8 25 4-28 30-54 (253)
335 1rz3_A Hypothetical protein rb 96.9 0.00072 2.5E-08 46.4 3.7 25 4-28 20-44 (201)
336 2f1r_A Molybdopterin-guanine d 96.9 0.00024 8.1E-09 47.6 1.2 22 8-29 4-25 (171)
337 4e22_A Cytidylate kinase; P-lo 96.9 0.00069 2.3E-08 48.3 3.7 23 5-27 26-48 (252)
338 2ghi_A Transport protein; mult 96.9 0.00054 1.9E-08 49.1 3.1 22 8-29 48-69 (260)
339 2ixe_A Antigen peptide transpo 96.9 0.0005 1.7E-08 49.6 2.9 22 8-29 47-68 (271)
340 2zu0_C Probable ATP-dependent 96.9 0.00053 1.8E-08 49.3 3.0 22 8-29 48-69 (267)
341 3crm_A TRNA delta(2)-isopenten 96.9 0.0006 2E-08 50.3 3.3 27 1-28 1-27 (323)
342 1u0l_A Probable GTPase ENGC; p 96.9 0.00049 1.7E-08 50.4 2.8 23 8-30 171-193 (301)
343 2ihy_A ABC transporter, ATP-bi 96.9 0.00059 2E-08 49.4 3.2 22 8-29 49-70 (279)
344 3fvq_A Fe(3+) IONS import ATP- 96.9 0.0015 5E-08 49.0 5.3 23 8-30 32-54 (359)
345 2nq2_C Hypothetical ABC transp 96.9 0.00054 1.9E-08 48.9 2.9 22 8-29 33-54 (253)
346 2pt5_A Shikimate kinase, SK; a 96.9 0.00063 2.1E-08 45.1 3.1 21 8-28 2-22 (168)
347 3d3q_A TRNA delta(2)-isopenten 96.9 0.00065 2.2E-08 50.4 3.4 28 1-28 1-29 (340)
348 3r20_A Cytidylate kinase; stru 96.9 0.00063 2.2E-08 47.9 3.2 25 4-28 7-31 (233)
349 2xb4_A Adenylate kinase; ATP-b 96.9 0.00066 2.3E-08 47.4 3.1 21 8-28 2-22 (223)
350 2yz2_A Putative ABC transporte 96.9 0.00059 2E-08 49.1 2.9 22 8-29 35-56 (266)
351 2ehv_A Hypothetical protein PH 96.9 0.0006 2.1E-08 48.2 2.9 20 8-27 32-51 (251)
352 4a74_A DNA repair and recombin 96.9 0.00052 1.8E-08 47.8 2.6 22 8-29 27-48 (231)
353 1ak2_A Adenylate kinase isoenz 96.9 0.00077 2.6E-08 47.4 3.4 24 5-28 15-38 (233)
354 2pjz_A Hypothetical protein ST 96.8 0.00073 2.5E-08 48.5 3.2 23 8-30 32-54 (263)
355 1lw7_A Transcriptional regulat 96.8 0.00058 2E-08 51.4 2.7 24 6-29 170-193 (365)
356 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00087 3E-08 48.0 3.5 23 6-28 4-26 (260)
357 2bwj_A Adenylate kinase 5; pho 96.8 0.00068 2.3E-08 46.2 2.9 24 5-28 11-34 (199)
358 1jbk_A CLPB protein; beta barr 96.8 0.00074 2.5E-08 45.4 3.0 24 6-29 43-66 (195)
359 1xjc_A MOBB protein homolog; s 96.8 0.0008 2.7E-08 44.9 3.1 22 7-28 5-26 (169)
360 1a7j_A Phosphoribulokinase; tr 96.8 0.00048 1.6E-08 50.2 2.1 27 1-28 1-27 (290)
361 2kjq_A DNAA-related protein; s 96.8 0.00053 1.8E-08 44.8 2.1 22 8-29 38-59 (149)
362 2pez_A Bifunctional 3'-phospho 96.8 0.00096 3.3E-08 44.7 3.4 25 4-28 3-27 (179)
363 3nh6_A ATP-binding cassette SU 96.8 0.00055 1.9E-08 50.2 2.3 22 8-29 82-103 (306)
364 2pbr_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 45.6 2.9 21 8-28 2-22 (195)
365 1g29_1 MALK, maltose transport 96.8 0.0024 8.2E-08 48.2 5.7 22 8-29 31-52 (372)
366 1gtv_A TMK, thymidylate kinase 96.8 0.00029 9.9E-09 48.6 0.6 21 8-28 2-22 (214)
367 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.8E-08 48.0 3.7 25 4-28 73-97 (281)
368 1sq5_A Pantothenate kinase; P- 96.7 0.001 3.4E-08 48.9 3.5 25 4-28 78-102 (308)
369 2z0h_A DTMP kinase, thymidylat 96.7 0.00078 2.7E-08 45.8 2.7 21 8-28 2-22 (197)
370 2x8a_A Nuclear valosin-contain 96.7 0.00076 2.6E-08 48.7 2.7 22 8-29 46-67 (274)
371 4eaq_A DTMP kinase, thymidylat 96.7 0.0013 4.5E-08 46.1 3.7 25 5-29 25-49 (229)
372 3e70_C DPA, signal recognition 96.7 0.0012 4.2E-08 48.8 3.7 25 4-28 127-151 (328)
373 2bbs_A Cystic fibrosis transme 96.7 0.00095 3.3E-08 48.6 3.0 22 8-29 66-87 (290)
374 1ixz_A ATP-dependent metallopr 96.7 0.00086 3E-08 47.7 2.8 22 8-29 51-72 (254)
375 2ze6_A Isopentenyl transferase 96.7 0.00091 3.1E-08 47.7 2.8 21 8-28 3-23 (253)
376 1e6c_A Shikimate kinase; phosp 96.7 0.001 3.5E-08 44.2 2.9 21 8-28 4-24 (173)
377 1rj9_A FTSY, signal recognitio 96.7 0.0012 4.1E-08 48.4 3.4 24 5-28 101-124 (304)
378 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4E-08 43.8 3.1 21 8-28 9-29 (168)
379 3b9q_A Chloroplast SRP recepto 96.7 0.0016 5.4E-08 47.7 4.0 24 5-28 99-122 (302)
380 2vp4_A Deoxynucleoside kinase; 96.6 0.0014 4.8E-08 45.9 3.5 25 5-29 19-43 (230)
381 3tui_C Methionine import ATP-b 96.6 0.0011 3.8E-08 49.7 3.0 22 8-29 56-77 (366)
382 3umf_A Adenylate kinase; rossm 96.6 0.0016 5.4E-08 45.3 3.6 21 8-28 31-51 (217)
383 1z47_A CYSA, putative ABC-tran 96.6 0.0011 3.7E-08 49.7 2.9 22 8-29 43-64 (355)
384 2iyv_A Shikimate kinase, SK; t 96.6 0.0012 4E-08 44.5 2.9 21 8-28 4-24 (184)
385 3jvv_A Twitching mobility prot 96.6 0.001 3.4E-08 49.9 2.7 22 8-29 125-146 (356)
386 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0011 3.8E-08 49.2 2.9 23 8-30 173-195 (330)
387 3rlf_A Maltose/maltodextrin im 96.6 0.0012 4E-08 49.9 3.0 22 8-29 31-52 (381)
388 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.3E-08 45.0 3.5 24 5-28 24-47 (211)
389 2yyz_A Sugar ABC transporter, 96.6 0.0012 4E-08 49.6 2.9 22 8-29 31-52 (359)
390 2it1_A 362AA long hypothetical 96.6 0.0012 4.1E-08 49.6 3.0 22 8-29 31-52 (362)
391 2p65_A Hypothetical protein PF 96.6 0.0009 3.1E-08 44.8 2.2 24 6-29 43-66 (187)
392 1oxx_K GLCV, glucose, ABC tran 96.6 0.002 6.8E-08 48.3 4.2 22 8-29 33-54 (353)
393 2gza_A Type IV secretion syste 96.6 0.0011 3.8E-08 49.8 2.8 23 7-29 176-198 (361)
394 2ewv_A Twitching motility prot 96.6 0.0012 4.2E-08 49.8 2.9 23 6-28 136-158 (372)
395 1v43_A Sugar-binding transport 96.5 0.0013 4.6E-08 49.5 3.0 22 8-29 39-60 (372)
396 1iy2_A ATP-dependent metallopr 96.5 0.0013 4.5E-08 47.4 2.8 22 8-29 75-96 (278)
397 1in4_A RUVB, holliday junction 96.5 0.0012 4.3E-08 49.0 2.7 23 7-29 52-74 (334)
398 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0013 4.5E-08 45.8 2.7 21 8-28 25-45 (235)
399 3bos_A Putative DNA replicatio 96.5 0.0015 5E-08 45.7 2.9 24 5-28 51-74 (242)
400 2og2_A Putative signal recogni 96.5 0.0023 7.9E-08 48.0 3.9 24 5-28 156-179 (359)
401 3d31_A Sulfate/molybdate ABC t 96.5 0.0011 3.7E-08 49.5 2.1 22 8-29 28-49 (348)
402 1lv7_A FTSH; alpha/beta domain 96.5 0.0019 6.4E-08 46.0 3.3 23 6-28 45-67 (257)
403 3ld9_A DTMP kinase, thymidylat 96.5 0.0021 7.2E-08 44.9 3.4 28 1-28 16-43 (223)
404 2w58_A DNAI, primosome compone 96.5 0.0017 5.8E-08 44.4 2.9 23 7-29 55-77 (202)
405 2yhs_A FTSY, cell division pro 96.4 0.0024 8.3E-08 49.8 3.9 24 5-28 292-315 (503)
406 2h92_A Cytidylate kinase; ross 96.4 0.0016 5.3E-08 45.2 2.6 24 5-28 2-25 (219)
407 3t15_A Ribulose bisphosphate c 96.4 0.0019 6.4E-08 47.1 3.1 24 5-28 35-58 (293)
408 3nwj_A ATSK2; P loop, shikimat 96.4 0.0015 5.3E-08 46.4 2.5 23 6-28 48-70 (250)
409 3kta_A Chromosome segregation 96.4 0.0019 6.3E-08 43.4 2.8 21 8-28 28-48 (182)
410 1ltq_A Polynucleotide kinase; 96.4 0.0023 7.7E-08 46.7 3.4 22 7-28 3-24 (301)
411 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.7E-08 43.9 3.2 21 8-28 4-24 (208)
412 1cr0_A DNA primase/helicase; R 96.4 0.0016 5.6E-08 47.4 2.6 22 8-29 37-58 (296)
413 2cvh_A DNA repair and recombin 96.4 0.0018 6.3E-08 44.7 2.7 22 7-28 21-42 (220)
414 3gd7_A Fusion complex of cysti 96.4 0.0018 6.2E-08 49.1 2.8 22 8-29 49-70 (390)
415 1p9r_A General secretion pathw 96.4 0.0017 6E-08 49.7 2.7 22 8-29 169-190 (418)
416 2grj_A Dephospho-COA kinase; T 96.4 0.0024 8.3E-08 43.5 3.2 25 5-29 11-35 (192)
417 1nij_A Hypothetical protein YJ 96.4 0.0015 5E-08 48.3 2.2 22 8-29 6-27 (318)
418 2oap_1 GSPE-2, type II secreti 96.3 0.0025 8.6E-08 50.1 3.6 24 7-30 261-284 (511)
419 3n70_A Transport activator; si 96.3 0.0022 7.6E-08 41.5 2.8 25 5-29 23-47 (145)
420 1n0w_A DNA repair protein RAD5 96.3 0.002 6.9E-08 45.2 2.8 22 8-29 26-47 (243)
421 1njg_A DNA polymerase III subu 96.3 0.0021 7.2E-08 44.8 2.7 21 8-28 47-67 (250)
422 2chg_A Replication factor C sm 96.3 0.0022 7.5E-08 44.1 2.7 21 8-28 40-60 (226)
423 3h4m_A Proteasome-activating n 96.3 0.0026 8.9E-08 45.9 3.1 25 5-29 50-74 (285)
424 1q3t_A Cytidylate kinase; nucl 96.3 0.0029 9.8E-08 44.5 3.2 25 4-28 14-38 (236)
425 2obl_A ESCN; ATPase, hydrolase 96.3 0.0024 8.1E-08 47.7 2.9 23 7-29 72-94 (347)
426 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.003 1E-07 44.9 3.3 23 6-28 39-61 (262)
427 3zvl_A Bifunctional polynucleo 96.2 0.0037 1.3E-07 47.9 3.9 24 5-28 257-280 (416)
428 1p5z_B DCK, deoxycytidine kina 96.2 0.0024 8.1E-08 45.7 2.6 25 5-29 23-47 (263)
429 3syl_A Protein CBBX; photosynt 96.2 0.0032 1.1E-07 45.9 3.4 24 5-28 66-89 (309)
430 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0022 7.6E-08 49.7 2.6 23 7-29 139-161 (460)
431 3b9p_A CG5977-PA, isoform A; A 96.2 0.0024 8.3E-08 46.4 2.7 24 6-29 54-77 (297)
432 1tue_A Replication protein E1; 96.2 0.0022 7.6E-08 44.1 2.2 22 7-28 59-80 (212)
433 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.003 1E-07 41.2 2.7 20 9-28 26-45 (149)
434 1svm_A Large T antigen; AAA+ f 96.2 0.0027 9.3E-08 47.9 2.7 24 5-28 168-191 (377)
435 2ocp_A DGK, deoxyguanosine kin 96.1 0.0039 1.3E-07 43.9 3.4 24 6-29 2-25 (241)
436 2qmh_A HPR kinase/phosphorylas 96.1 0.0036 1.2E-07 42.8 3.0 24 6-29 34-57 (205)
437 1d2n_A N-ethylmaleimide-sensit 96.1 0.004 1.4E-07 44.7 3.4 26 4-29 62-87 (272)
438 3cf0_A Transitional endoplasmi 96.1 0.003 1E-07 46.1 2.7 24 6-29 49-72 (301)
439 1l8q_A Chromosomal replication 96.1 0.003 1E-07 46.5 2.7 22 7-28 38-59 (324)
440 3b60_A Lipid A export ATP-bind 96.1 0.0035 1.2E-07 50.2 3.1 22 8-29 371-392 (582)
441 2dpy_A FLII, flagellum-specifi 96.0 0.0034 1.2E-07 48.4 2.9 23 7-29 158-180 (438)
442 3exa_A TRNA delta(2)-isopenten 96.0 0.0049 1.7E-07 45.2 3.5 25 5-29 2-26 (322)
443 3gmt_A Adenylate kinase; ssgci 96.0 0.0044 1.5E-07 43.4 3.1 24 5-28 7-30 (230)
444 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0039 1.3E-07 49.4 3.2 23 8-30 49-71 (538)
445 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0057 2E-07 45.7 3.9 24 5-28 23-46 (359)
446 4ido_A Atlastin-1; GTPase, GTP 96.0 0.012 4E-07 45.5 5.6 21 7-27 68-88 (457)
447 1nlf_A Regulatory protein REPA 96.0 0.0034 1.2E-07 45.3 2.6 21 8-28 32-52 (279)
448 1vma_A Cell division protein F 96.0 0.0062 2.1E-07 44.7 3.9 24 5-28 103-126 (306)
449 4edh_A DTMP kinase, thymidylat 96.0 0.005 1.7E-07 42.7 3.3 25 4-28 4-28 (213)
450 3co5_A Putative two-component 96.0 0.0024 8.3E-08 41.2 1.6 24 6-29 27-50 (143)
451 2px0_A Flagellar biosynthesis 96.0 0.0035 1.2E-07 45.8 2.6 24 5-28 104-127 (296)
452 3euj_A Chromosome partition pr 96.0 0.0036 1.2E-07 48.7 2.8 21 8-28 31-51 (483)
453 1azs_C GS-alpha; complex (lyas 96.0 0.0046 1.6E-07 47.0 3.2 23 4-26 38-60 (402)
454 3b5x_A Lipid A export ATP-bind 96.0 0.004 1.4E-07 49.8 3.1 22 8-29 371-392 (582)
455 2qby_A CDC6 homolog 1, cell di 96.0 0.0036 1.2E-07 47.0 2.6 23 6-28 45-67 (386)
456 1ofh_A ATP-dependent HSL prote 96.0 0.004 1.4E-07 45.3 2.8 23 6-28 50-72 (310)
457 2dr3_A UPF0273 protein PH0284; 95.9 0.0042 1.4E-07 43.6 2.8 21 8-28 25-45 (247)
458 3lv8_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 43.5 3.0 25 4-28 25-49 (236)
459 3v9p_A DTMP kinase, thymidylat 95.9 0.0041 1.4E-07 43.6 2.6 25 4-28 23-47 (227)
460 2yl4_A ATP-binding cassette SU 95.9 0.0037 1.3E-07 50.2 2.7 22 8-29 372-393 (595)
461 3ozx_A RNAse L inhibitor; ATP 95.9 0.0043 1.5E-07 49.1 3.0 23 8-30 27-49 (538)
462 1fnn_A CDC6P, cell division co 95.9 0.0048 1.6E-07 46.4 3.0 22 8-29 46-67 (389)
463 3qf4_B Uncharacterized ABC tra 95.9 0.0042 1.4E-07 49.9 2.8 23 7-29 382-404 (598)
464 1sxj_E Activator 1 40 kDa subu 95.9 0.0038 1.3E-07 46.5 2.4 20 9-28 39-58 (354)
465 1pzn_A RAD51, DNA repair and r 95.8 0.0043 1.5E-07 46.4 2.6 22 8-29 133-154 (349)
466 3j16_B RLI1P; ribosome recycli 95.8 0.0049 1.7E-07 49.5 3.0 23 8-30 105-127 (608)
467 3pxg_A Negative regulator of g 95.8 0.0046 1.6E-07 48.1 2.8 24 6-29 201-224 (468)
468 4fcw_A Chaperone protein CLPB; 95.8 0.0071 2.4E-07 44.1 3.7 23 7-29 48-70 (311)
469 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0046 1.6E-07 45.7 2.7 24 6-29 45-68 (322)
470 3eie_A Vacuolar protein sortin 95.8 0.0056 1.9E-07 45.1 3.2 23 6-28 51-73 (322)
471 1c9k_A COBU, adenosylcobinamid 95.8 0.0061 2.1E-07 41.0 3.0 21 9-29 2-22 (180)
472 1sxj_C Activator 1 40 kDa subu 95.8 0.0047 1.6E-07 45.9 2.7 21 9-29 49-69 (340)
473 4a82_A Cystic fibrosis transme 95.8 0.0037 1.3E-07 50.0 2.1 22 8-29 369-390 (578)
474 3te6_A Regulatory protein SIR3 95.8 0.0047 1.6E-07 45.5 2.5 26 4-29 43-68 (318)
475 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0055 1.9E-07 46.1 2.9 19 9-27 26-44 (365)
476 4b4t_K 26S protease regulatory 95.8 0.0051 1.7E-07 47.2 2.7 23 6-28 206-228 (428)
477 2v1u_A Cell division control p 95.8 0.0052 1.8E-07 46.1 2.8 24 5-28 43-66 (387)
478 3bk7_A ABC transporter ATP-bin 95.7 0.0062 2.1E-07 49.0 3.2 23 8-30 119-141 (607)
479 3qf4_A ABC transporter, ATP-bi 95.7 0.0049 1.7E-07 49.4 2.6 22 8-29 371-392 (587)
480 3tqf_A HPR(Ser) kinase; transf 95.7 0.0062 2.1E-07 40.6 2.7 23 7-29 17-39 (181)
481 4b4t_M 26S protease regulatory 95.7 0.0069 2.4E-07 46.6 3.3 24 5-28 214-237 (434)
482 3ozx_A RNAse L inhibitor; ATP 95.7 0.0059 2E-07 48.3 3.0 22 8-29 296-317 (538)
483 2qgz_A Helicase loader, putati 95.7 0.0063 2.2E-07 44.6 2.9 23 6-28 152-174 (308)
484 1sxj_D Activator 1 41 kDa subu 95.7 0.0059 2E-07 45.3 2.7 22 8-29 60-81 (353)
485 3uk6_A RUVB-like 2; hexameric 95.7 0.0061 2.1E-07 45.6 2.8 23 7-29 71-93 (368)
486 2r62_A Cell division protease 95.6 0.0026 8.8E-08 45.5 0.6 22 7-28 45-66 (268)
487 2qen_A Walker-type ATPase; unk 95.6 0.0063 2.2E-07 45.0 2.8 22 8-29 33-54 (350)
488 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0074 2.5E-07 47.8 3.2 22 8-29 314-335 (538)
489 3foz_A TRNA delta(2)-isopenten 95.6 0.011 3.6E-07 43.4 3.8 24 6-29 10-33 (316)
490 3a8t_A Adenylate isopentenyltr 95.6 0.011 3.6E-07 43.9 3.8 23 7-29 41-63 (339)
491 3cr8_A Sulfate adenylyltranfer 95.6 0.0051 1.7E-07 48.8 2.2 25 5-29 368-392 (552)
492 3bk7_A ABC transporter ATP-bin 95.6 0.0069 2.4E-07 48.7 3.0 22 8-29 384-405 (607)
493 4b4t_L 26S protease subunit RP 95.6 0.0083 2.8E-07 46.2 3.3 24 5-28 214-237 (437)
494 2fna_A Conserved hypothetical 95.5 0.0065 2.2E-07 45.0 2.6 22 8-29 32-53 (357)
495 3pfi_A Holliday junction ATP-d 95.5 0.008 2.7E-07 44.5 3.1 24 6-29 55-78 (338)
496 2bjv_A PSP operon transcriptio 95.5 0.0078 2.7E-07 42.9 2.9 24 6-29 29-52 (265)
497 3tmk_A Thymidylate kinase; pho 95.5 0.01 3.5E-07 41.2 3.3 25 5-29 4-28 (216)
498 4tmk_A Protein (thymidylate ki 95.5 0.0089 3E-07 41.4 3.0 24 5-28 2-25 (213)
499 2qp9_X Vacuolar protein sortin 95.5 0.0072 2.4E-07 45.3 2.7 23 7-29 85-107 (355)
500 1um8_A ATP-dependent CLP prote 95.5 0.008 2.7E-07 45.3 3.0 24 6-29 72-95 (376)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.2e-41 Score=239.54 Aligned_cols=164 Identities=29% Similarity=0.522 Sum_probs=138.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++++||+|+|++|||||||+++|+.+.|...+.||.+..+ .....+++..+.+++|||+|+++|..++..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 5679999999999999999999999999999999987554 566778899999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++++++.+.. |+..+... .+++|++||+||+|+... +.+..++++++++.++ ++|++||
T Consensus 91 lv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~------------r~V~~~e~~~~a~~~~-~~~~e~S 156 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADK------------RQVSIEEGERKAKELN-VMFIETS 156 (216)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred EEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhc------------CcccHHHHhhHHHHhC-CeeEEEe
Confidence 9999999999999985 77777654 578999999999999776 6688999999999999 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|+.|++.+..
T Consensus 157 Aktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-38 Score=224.84 Aligned_cols=180 Identities=54% Similarity=1.002 Sum_probs=153.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|++++.+||+++|++|+|||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.+..++..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 67788999999999999999999999999888888888887777777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|||+++++++..+...|+..+....+++|+++|+||+|+........ ...+.+..+++..++..++..+++++
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLA----DHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHH----TCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccc----cccCCCCHHHHHHHHHHcCCceEEEc
Confidence 99999999999999987669999988778999999999999976543111 01234567888899999986699999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|++|.+.+.+...
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC--
T ss_pred cCCCCCCHHHHHHHHHHHHhhhhh
Confidence 999999999999999998876554
No 3
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.9e-39 Score=223.71 Aligned_cols=181 Identities=31% Similarity=0.456 Sum_probs=143.1
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|...+.+||+|+|.+|||||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 44567899999999999999999999999988888888887776667777888999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..++...++..++ ++++
T Consensus 99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 164 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPE------------REVQAVEGKKLAESWG-ATFM 164 (201)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEE
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccc------------cccCHHHHHHHHHHhC-CeEE
Confidence 999999999999998874 77777654 357899999999999765 4477788899999998 6999
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
++||++|.|++++|.+|.+.+.+......++++|.||
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~ 201 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence 9999999999999999999999888888777889886
No 4
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=4.1e-38 Score=217.23 Aligned_cols=184 Identities=72% Similarity=1.266 Sum_probs=161.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+++.+||+++|.+|+|||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 57889999999999999999999999988888888887777777788999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.++..+...|+..+....++.|+++|+||+|+...............+.+..++...+++.++..+++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999998756988888877799999999999998776555555555567788888999999998669999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCccc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++|.|++++|++|.+.+.++..++
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCCCC--
T ss_pred CCccCHHHHHHHHHHHHhcccccC
Confidence 999999999999999998765443
No 5
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.5e-38 Score=217.24 Aligned_cols=178 Identities=63% Similarity=1.081 Sum_probs=157.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|.+|||||||+++|+++.+...+.+|....+...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 56899999999999999999999998888888888777766777888889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||+++++++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 176 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCC
Confidence 99999999999875698888887789999999999999877655555555555678888899999999866899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|++|.+.++++
T Consensus 177 g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 177 QKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999987653
No 6
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.1e-37 Score=216.80 Aligned_cols=172 Identities=46% Similarity=0.884 Sum_probs=154.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 56799999999999999999999999988888899988887788889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....++.|+++|+||+|+..... +.+..+++..+++.++...++++||+
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS----------DDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT----------TCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC----------CcccHHHHHHHHHhcCCCEEEEeecC
Confidence 99999999999986679999988888999999999999976422 44777889999999985459999999
Q ss_pred CcccHHHHHHHHHHHHcCCCcc
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
+|.|++++|++|.+.+.+.++.
T Consensus 171 ~~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCSCC-
T ss_pred CCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998876653
No 7
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=9.8e-38 Score=220.15 Aligned_cols=183 Identities=38% Similarity=0.666 Sum_probs=156.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 56799999999999999999999999998888999888877777888888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 99999999999855569999988888999999999999987655555555555577888999999999995499999999
Q ss_pred Cccc-HHHHHHHHHHHHcCCCccc
Q psy10443 164 TQRG-LRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 164 ~~~~-v~~~~~~l~~~~~~~~~~~ 186 (195)
+|.| ++++|.++.+.+.......
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC-----
T ss_pred CCcccHHHHHHHHHHHHhccCcCC
Confidence 9998 9999999999988765543
No 8
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=217.97 Aligned_cols=181 Identities=57% Similarity=1.004 Sum_probs=150.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|+...+.....+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 56899999999999999999999998888888888887777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|+..+....+++|+++|+||+|+...............+.+..++...++..++..+++++||+
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence 99999999999987569988888778999999999999987654444444444466778889999999886699999999
Q ss_pred CcccHHHHHHHHHHHHcCCCc
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+|.|++++|++|.+.+.+.+.
T Consensus 178 ~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcccc
Confidence 999999999999998876543
No 9
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.4e-37 Score=212.54 Aligned_cols=179 Identities=44% Similarity=0.831 Sum_probs=154.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|++|||||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.|..++..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 46789999999999999999999999988888888887777667778888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||+++++++..+...|+..+....++.|+++|+||+|+...............+.+..+++..+++.++.++++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999998556988888877899999999999998654433333333446678888999999988779999999
Q ss_pred C-CcccHHHHHHHHHHHHcC
Q psy10443 163 L-TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~-~~~~v~~~~~~l~~~~~~ 181 (195)
+ ++.|++++|+.+.+.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 699999999999998764
No 10
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=217.40 Aligned_cols=180 Identities=48% Similarity=0.927 Sum_probs=139.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 36799999999999999999999998888888888877777777889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999987669998888778899999999999988766555555556677888899999999986699999999
Q ss_pred CcccHHHHHHHHHHHHcCCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|.|++++|++|.+.+.+.+
T Consensus 192 ~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887554
No 11
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=8.5e-38 Score=214.97 Aligned_cols=180 Identities=56% Similarity=1.015 Sum_probs=136.0
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|++++.+||+++|++|+|||||+++|.++.+...+.+|....+.....+++..+.+.+||+||++++...+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 67788999999999999999999999999888888888877766666677888899999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+++|+|++++.++..+...|+..+....+++|+++|+||+|+......... ......+..+++..+++.++..+++++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc--cccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999876699988887778999999999999765432111 122244567788899999886699999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
||++|.|++++|++|.+.+.++
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999988653
No 12
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3.1e-37 Score=216.13 Aligned_cols=176 Identities=73% Similarity=1.301 Sum_probs=157.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|.+|||||||+++|+++.+...+.+++...+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 57899999999999999999999999888888888888777778888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....++.|+++|+||+|+...........+...+.+..++...+++.++..+++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 99999999999987679999988888999999999999998877777677777777888999999999997789999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 13
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-36 Score=213.89 Aligned_cols=181 Identities=55% Similarity=0.973 Sum_probs=153.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++++||+++|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 46789999999999999999999999988888888887776666778898999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.++..+...|+..+....++.|+++|+||+|+...............+.+..++...++..++..+++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999998657988888877899999999999998776655555555556678888999999998668999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++|.|++++|++|.+.+.+++
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 14
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.2e-36 Score=209.16 Aligned_cols=172 Identities=27% Similarity=0.415 Sum_probs=149.1
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|...+.+||+++|.+|||||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 67788999999999999999999999998888888899888777778889999999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..+++..+++.++ ++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~ 146 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHME------------RVISYEEGKALAESWN-AAFL 146 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEE
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc------------ceecHHHHHHHHHHhC-CcEE
Confidence 999999999999999875 77766554 347999999999999655 4577888999999998 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++||++|.|++++|++|.+.+.+.+...
T Consensus 147 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 147 ESSAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHHTC----
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999998776543
No 15
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-37 Score=213.98 Aligned_cols=178 Identities=44% Similarity=0.835 Sum_probs=153.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|++|||||||+++|+++.+...+.+|....+...+.+++..+.+.+||+||++.|..++..+++++|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999988888888877776667778888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|+..+....++.|+++|+||+|+...............+.+..+++..+++.++.++++++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 99999999999885569888888778999999999999976544333333334466788889999999886789999999
Q ss_pred -CcccHHHHHHHHHHHHcC
Q psy10443 164 -TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 -~~~~v~~~~~~l~~~~~~ 181 (195)
++.|++++|+.+.+.+.+
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999988753
No 16
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.1e-36 Score=211.40 Aligned_cols=178 Identities=57% Similarity=1.011 Sum_probs=157.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
...+||+++|.+|||||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45789999999999999999999999888888888877776667888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|...+....++.|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 99999999999986579988888778999999999999988766555555555567888889999999986689999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
+|.|++++|++|.+.+.+
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
No 17
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.2e-36 Score=210.40 Aligned_cols=177 Identities=33% Similarity=0.564 Sum_probs=143.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|.+|||||||+++|.++.+...+.++..........+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 56899999999999999999999999888888888877777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++.++..+.. |+..+... ..+.|+++|+||+|+.. +....++...++..++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 146 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPS-------------RTVDTKQAQDLARSYG-IPFIETS 146 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSS-------------CSSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCcc-------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence 999999999988874 77766653 35899999999999974 3366778888999888 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC---------ccccCCCceeeC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE---------PVKRRQRKCVII 195 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~---------~~~~~~~~c~~~ 195 (195)
|++|.|++++|++|.+.+.+.. .+++++++|+||
T Consensus 147 a~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 147 AKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 9999999999999999876332 122333568875
No 18
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.4e-36 Score=207.59 Aligned_cols=165 Identities=21% Similarity=0.373 Sum_probs=142.3
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+++.+||+++|++|||||||+++|+++.+...+.+|. ..+...+.+++..+.+.+||++|++.+. +++.+|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 35688999999999999999999999999888787874 4445778889999999999999998876 77889999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+..... +.+..+++..++..++.+++++
T Consensus 90 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANP----------RVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHTTTCEEEE
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccc----------cccCHHHHHHHHHHcCCCeEEE
Confidence 99999999999999875 888887653 5799999999999953221 5577888999999998789999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+||++|.|++++|++|.+.+.+.+
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 19
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.9e-36 Score=206.91 Aligned_cols=164 Identities=32% Similarity=0.480 Sum_probs=140.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|.+|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||+||++.+..+ ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 46789999999999999999999999998888889988777667788999999999999999988875 56889999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++.++++.++ ++++
T Consensus 97 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 162 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQY------------RQVTKAEGVALAGRFG-CLFF 162 (187)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEE
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhc------------CccCHHHHHHHHHHcC-CcEE
Confidence 9999999999998874 877776642 68999999999999664 4477788999999998 6999
Q ss_pred Eecc-CCcccHHHHHHHHHHHHcC
Q psy10443 159 ECSA-LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 159 ~~Sa-~~~~~v~~~~~~l~~~~~~ 181 (195)
++|| ++|.|++++|+.|.+.+.+
T Consensus 163 e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 163 EVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp ECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEeecCccccHHHHHHHHHHHHhh
Confidence 9999 8999999999999988753
No 20
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.8e-36 Score=206.81 Aligned_cols=166 Identities=22% Similarity=0.295 Sum_probs=139.9
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|.+++.+||+++|++|||||||+++|+++.+.. +.+|.+..+...+.+++..+.+.+||+||+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 778899999999999999999999999998865 77787776677778899999999999999987 356788999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+++|||+++++++..+.. |+..+... .+++|+++|+||+|+..... +.+..+++..++..++.++
T Consensus 76 ~ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~ 144 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSP----------RVVGDARARALXADMKRCS 144 (178)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHHSSEE
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------CcCCHHHHHHHHHhhcCCe
Confidence 999999999999998874 65555432 25899999999999953211 4577788888988886689
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++++||++|.|++++|++|.+.+.+.+
T Consensus 145 ~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886543
No 21
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=210.48 Aligned_cols=164 Identities=30% Similarity=0.508 Sum_probs=145.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 46799999999999999999999999888888888887777777889998999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++..++ ++++++|
T Consensus 92 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (206)
T 2bov_A 92 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS 157 (206)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCcccc------------ccccHHHHHHHHHHhC-CeEEEEe
Confidence 999999999998874 877777654 48999999999999765 3466778888998888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|.+|.+.+.+
T Consensus 158 a~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 22
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6.1e-36 Score=202.87 Aligned_cols=164 Identities=32% Similarity=0.535 Sum_probs=143.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|.+|||||||+++|.++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888877777677778888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |+..+... .++.|+++|+||+|+... +.+..++...+++.++..+++++|
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 147 (167)
T 1c1y_A 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWCNCAFLESS 147 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTSCEEEECB
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECcccccc------------ccCCHHHHHHHHHHccCCcEEEec
Confidence 999999999998875 76666553 468999999999999765 446677888899888558999999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|++|.|++++|++|.+.+.
T Consensus 148 a~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 148 AKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTTBSHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998774
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=203.83 Aligned_cols=169 Identities=31% Similarity=0.564 Sum_probs=145.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999888777777765443 456778898899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|++++.++..+. .|+..+....++.|+++|+||+|+... +.+..++...++...+ ++++++||
T Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (181)
T 3tw8_B 87 VVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPER------------KVVETEDAYKFAGQMG-IQLFETSA 152 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchh------------cccCHHHHHHHHHHcC-CeEEEEEC
Confidence 999999999999987 488888888889999999999998765 4466778888999888 68999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCccc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++|.|++++|++|.+.+.+.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 153 KENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999887665543
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=8.9e-36 Score=202.07 Aligned_cols=165 Identities=31% Similarity=0.512 Sum_probs=142.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+++.+||+++|.+|+|||||+++|.++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 S~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 46789999999999999999999999988888888887777777788899899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|+++++++..+.. |+..+.... .+.|+++|+||+|+... +.+..+++..++..++ ++++++
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 146 (168)
T 1u8z_A 81 CVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVET 146 (168)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEe
Confidence 9999999999998874 777776653 48999999999999765 3366778888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|++|.+.+.+
T Consensus 147 Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 147 SAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998754
No 25
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=7.1e-36 Score=205.63 Aligned_cols=168 Identities=28% Similarity=0.559 Sum_probs=116.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999999888777777775544 356677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..+++..+++.++ ++++++|
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 151 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETS 151 (183)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCcc------------CcCCHHHHHHHHHHcC-CeEEEEe
Confidence 9999999999998875 88777765 468999999999999765 3466778889999888 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
|++|.|++++|.+|.+.+.+...+
T Consensus 152 a~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988765443
No 26
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.7e-35 Score=202.03 Aligned_cols=164 Identities=34% Similarity=0.516 Sum_probs=146.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999888888888887777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..++++.+++.++ ++++++|
T Consensus 96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 161 (183)
T 3kkq_A 96 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHL------------RKVTRDQGKEMATKYN-IPYIETS 161 (183)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTT------------CCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhc------------cCcCHHHHHHHHHHhC-CeEEEec
Confidence 999999999998874 77766542 468999999999999764 4577888999999998 7899999
Q ss_pred cC-CcccHHHHHHHHHHHHcC
Q psy10443 162 AL-TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~-~~~~v~~~~~~l~~~~~~ 181 (195)
|+ +|.|++++|++|.+.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 99 999999999999998754
No 27
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=7.2e-35 Score=198.17 Aligned_cols=165 Identities=27% Similarity=0.565 Sum_probs=135.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
..+.+||+++|++|+|||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999888777777775544 35666788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+. .|+..+... .+++|+++|+||+|+... +.+..++...+++.++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 148 (170)
T 1z08_A 83 ILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHT 148 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEe
Confidence 9999999999998887 487777654 357999999999999765 3466778888999888 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|++|.+.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 149 SAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998754
No 28
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=199.88 Aligned_cols=165 Identities=27% Similarity=0.335 Sum_probs=128.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc--ccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED--YDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~--~~~~~~~~~~~~d~~ 81 (195)
++.+||+++|++|||||||+++|.+..+...+..+..+.....+.+++..+.+.+||+||++. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 578999999999999999999999987654443333333355667888989999999999987 566677889999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
++|||++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..++.+.++..++ +++++
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~ 147 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARC------------REVSVEEGRACAVVFD-CKFIE 147 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHHT-SEEEE
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence 99999999999998874 77766654 357999999999999765 3466677888888888 79999
Q ss_pred eccCCcccHHHHHHHHHHHHcCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+||++|.|++++|++|.+.+...
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988643
No 29
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=205.46 Aligned_cols=167 Identities=26% Similarity=0.449 Sum_probs=137.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999999888777777765544 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++++++.+. .|+..+.... .++|+++|+||+|+... +.+..+++.+++..++..+++++|
T Consensus 107 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~S 173 (201)
T 2hup_A 107 LAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSEL------------REVSLAEAQSLAEHYDILCAIETS 173 (201)
T ss_dssp EEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCccccc------------cccCHHHHHHHHHHcCCCEEEEEe
Confidence 999999999999887 4888777654 68999999999999764 446778888999998844899999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|++|.+.+.+..
T Consensus 174 A~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 174 AKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887543
No 30
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=6.4e-35 Score=200.26 Aligned_cols=167 Identities=32% Similarity=0.563 Sum_probs=145.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|.+|||||||+++|+++.+...+.+|+...+.....+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 56799999999999999999999999888888888887777778889998999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHH-hhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPEL-KHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |+..+ ... ..+.|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 87 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 152 (181)
T 2fn4_A 87 VFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQ------------RQVPRSEASAFGASHH-VAYFEAS 152 (181)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEec
Confidence 999999999998875 66665 333 358999999999999765 3466777888888887 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|++++|++|.+.+.+.++
T Consensus 153 a~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999998875544
No 31
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-35 Score=204.74 Aligned_cols=168 Identities=32% Similarity=0.494 Sum_probs=143.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|..++.+||+++|.+|||||||+++|+++.+...+.+|....+...+.+++..+.+.+||+||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 445678999999999999999999999998888888888777777778899999999999999988 7777888899999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..+++..+++.++ ++++
T Consensus 102 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 167 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFY 167 (196)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEE
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHhC-CeEE
Confidence 999999999999998874 77766653 358999999999999765 3466778888998887 7999
Q ss_pred EeccCCcc-cHHHHHHHHHHHHcCCC
Q psy10443 159 ECSALTQR-GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 159 ~~Sa~~~~-~v~~~~~~l~~~~~~~~ 183 (195)
++||++|. |++++|++|.+.+.+.+
T Consensus 168 ~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 168 ECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp ECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred EECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 99999999 99999999999886543
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.3e-35 Score=201.37 Aligned_cols=168 Identities=26% Similarity=0.427 Sum_probs=140.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCC-EEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDG-IPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.++.+||+++|++|||||||+++|+++.+...+.+|.+.. ....+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 5678999999999999999999999988776666776433 345566665 67899999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhC---CCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHC---PDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+++|+|+++++++..+. .|+..+.... .+.| +++|+||+|+... +.+..++...+++.++ ++
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 148 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHM------------RTIKPEKHLRFCQENG-FS 148 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHcC-Cc
Confidence 99999999999998887 4877776532 2455 8999999999764 3466778888988888 79
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++++||++|.|++++|++|.+.+.+...
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998876543
No 33
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.5e-35 Score=198.39 Aligned_cols=163 Identities=33% Similarity=0.555 Sum_probs=141.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+++||+++|++|+|||||+++|.++.+...+.++..........+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888877667777889999999999999999999888889999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |...+... ..+.|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 146 (167)
T 1kao_A 81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESE------------REVSSSEGRALAEEWG-CPFMETS 146 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SCEEEEC
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCccccc------------ccCCHHHHHHHHHHhC-CCEEEec
Confidence 999999999988875 66555543 358999999999998754 3466777888888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|++|.|++++|++|.+.+.
T Consensus 147 a~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 147 AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998764
No 34
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-35 Score=206.35 Aligned_cols=166 Identities=26% Similarity=0.492 Sum_probs=141.4
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
....++|+++|.+|||||||+++|.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35689999999999999999999999888777778877666666777888899999999999999988888999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
+|||++++.++..+.. |+..+... .++.|+++|+||+|+... .+..++...++..++ +++++
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~ 149 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-------------EVDTREAQAVAQEWK-CAFME 149 (199)
T ss_dssp EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-------------SSCHHHHHHHHHHHT-CEEEE
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-------------ccCHHHHHHHHHHhC-CeEEE
Confidence 9999999999988774 55555443 357899999999998752 255677788888888 68999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+||++|.|++++|++|.+.+.+.+
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 150 TSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp CBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred EecCCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999999876553
No 35
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=203.98 Aligned_cols=167 Identities=26% Similarity=0.483 Sum_probs=136.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4568999999999999999999999988777777765544 345677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 91 lV~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 156 (223)
T 3cpj_B 91 IVYDISKSSSYENCNH-WLSELRENADDNVAVGLIGNKSDLAHL------------RAVPTEESKTFAQENQ-LLFTETS 156 (223)
T ss_dssp EEEC-CCHHHHHHHHH-HHHHHHHHCC--CEEEEEECCGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999998874 88877765 357999999999999764 3466778888888887 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|++++|++|.+.+.+...
T Consensus 157 a~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876544
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.1e-34 Score=197.07 Aligned_cols=165 Identities=26% Similarity=0.494 Sum_probs=141.2
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
+++.+||+++|.+|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999888776767765544 45567788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..++...++...+ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 148 (170)
T 1r2q_A 83 IVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANK------------RAVDFQEAQSYADDNS-LLFMET 148 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence 99999999999988874 77766654 568999999999999654 3366677888888887 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|++|.+.+.+
T Consensus 149 Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTSCC
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987653
No 37
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.1e-34 Score=196.77 Aligned_cols=164 Identities=31% Similarity=0.546 Sum_probs=142.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 5689999999999999999999999888777777765443 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|++++.++..+.. |+..+....++.|+++|+||+|+... +.+..+++..+++.++ ++++++||
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEEAEGLAKRLK-LRFYRTSV 148 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEec
Confidence 9999999999988875 87777665578999999999999765 3366778888888888 69999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|++|.+.+.+
T Consensus 149 ~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-34 Score=196.61 Aligned_cols=167 Identities=34% Similarity=0.629 Sum_probs=133.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+.+||+++|.+|+|||||+++|++..+. ..+.++....+. ....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 56899999999999999999999998874 456666655543 4457788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+.. |+..+.... .+.|+++|+||+|+... +.+..++...+++.++ ++++++
T Consensus 88 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 153 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKREDGEKLAKEYG-LPFMET 153 (180)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHHHHHHHHHHHT-CCEEEC
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence 99999999999988874 877777654 68999999999999765 3466777888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|++|.+.+.+.+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC---
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998876543
No 39
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.9e-34 Score=201.19 Aligned_cols=167 Identities=28% Similarity=0.567 Sum_probs=142.9
Q ss_pred CCC--CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCC
Q psy10443 1 MSS--GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQ 77 (195)
Q Consensus 1 m~~--~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~ 77 (195)
|+. .+.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 653 4579999999999999999999999988777777775554 3566778888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+|++|+|+|++++.++..+.. |+..+.... ++.|+++|+||+|+... +.+..++...++...+ ++
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 146 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MP 146 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CC
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-Ce
Confidence 999999999999999998875 887777653 67999999999999765 3466777888888887 68
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++++||++|.|++++|.+|.+.+.+
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999997753
No 40
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.5e-35 Score=202.55 Aligned_cols=165 Identities=30% Similarity=0.503 Sum_probs=144.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|+|||||+++|++..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 56799999999999999999999999888888888877777777888988999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..+++.++ ++++++|
T Consensus 96 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 161 (187)
T 2a9k_A 96 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS 161 (187)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeC
Confidence 999999999988874 777766653 38999999999999765 3466778888998888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++.|++++|++|.+.+.+.
T Consensus 162 a~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988653
No 41
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.8e-34 Score=195.51 Aligned_cols=163 Identities=26% Similarity=0.358 Sum_probs=118.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|||||||+++|.+.... ...++.+..+.....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 3589999999999999999999976543 333444444556677899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||+++++++..+.. |+..+... .+++|+++|+||+|+... +.+..++...++...+ ++++++||
T Consensus 80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 145 (166)
T 3q72_A 80 YSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRS------------REVSVDEGRACAVVFD-CKFIETSA 145 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSS------------CCSCHHHHHHHHHHTT-CEEEECBG
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccc------------cccCHHHHHHHHHHhC-CcEEEecc
Confidence 99999999998875 66666554 368999999999999765 4477788888999888 79999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|++|.+.+.+.
T Consensus 146 ~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 146 ALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp GGTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987643
No 42
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.5e-34 Score=199.04 Aligned_cols=167 Identities=32% Similarity=0.519 Sum_probs=134.2
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++++||+++|.+|||||||+++|+++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 46789999999999999999999999888777888887777777788899999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+... ....+++.+++..++ ++++++
T Consensus 98 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~~ 162 (190)
T 3con_A 98 CVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPTR-------------TVDTKQAHELAKSYG-IPFIET 162 (190)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHT-CCEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCcc-------------cCCHHHHHHHHHHcC-CeEEEE
Confidence 999999999998886 4777776643 47999999999998652 255677888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|++|.+.+.+.+.
T Consensus 163 Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 163 SAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875443
No 43
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-34 Score=202.31 Aligned_cols=165 Identities=25% Similarity=0.499 Sum_probs=142.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3568999999999999999999999988777777765443 456778898899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 104 ~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 169 (201)
T 2ew1_A 104 LTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER------------REVSQQRAEEFSEAQD-MYYLETS 169 (201)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988874 888777653 57999999999999754 3466778888888887 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|.+|.+.+.+.
T Consensus 170 a~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=6.2e-34 Score=196.98 Aligned_cols=164 Identities=32% Similarity=0.566 Sum_probs=141.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|+|||||+++|++..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 3568999999999999999999999888777777765444 345567888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+.... ++.|+++|+||+|+... +.+..++.+.+++.++ ++++++|
T Consensus 100 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 165 (189)
T 2gf9_A 100 LMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDE------------RVVPAEDGRRLADDLG-FEFFEAS 165 (189)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEE
Confidence 9999999999988874 887777654 68999999999999764 3466678888999888 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 166 a~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.2e-34 Score=196.93 Aligned_cols=167 Identities=30% Similarity=0.520 Sum_probs=141.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++.+||+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4679999999999999999999999888777666665444 445667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..+++..+++..+ ++++++|
T Consensus 90 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 155 (181)
T 2efe_B 90 IVFDVTNQASFERAKK-WVQELQAQGNPNMVMALAGNKSDLLDA------------RKVTAEDAQTYAQENG-LFFMETS 155 (181)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc------------ccCCHHHHHHHHHHcC-CEEEEEE
Confidence 9999999999988874 77777665 368999999999999764 3466778888998887 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|++++|++|.+.+.+..+
T Consensus 156 a~~g~gi~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPRVQP 178 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC----
T ss_pred CCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998866543
No 46
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.6e-34 Score=198.47 Aligned_cols=167 Identities=30% Similarity=0.555 Sum_probs=127.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+.+||+++|.+|+|||||+++|++..+...+.++.+..+ ...+.++ +..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 5689999999999999999999999888777777765443 3445555 5668889999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
++|+|++++.++..+.. |+..+.... .+.|+++|+||+|+.... +.+..+++..++......+
T Consensus 86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESK-----------KIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-----------CCSCHHHHHHHHHHTTSCC
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCcccccc-----------ccCCHHHHHHHHHhcCCCe
Confidence 99999999999988874 776665432 679999999999996432 3356777888888666689
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++||++|.|++++|++|.+.+.+.
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.2e-34 Score=194.31 Aligned_cols=164 Identities=26% Similarity=0.487 Sum_probs=142.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.++.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45789999999999999999999999988777777775554 45567788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+. .|+..+... .++.|+++|+||+|+... +.+..++...++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 148 (170)
T 1z0j_A 83 IIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVET 148 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCccccc------------cccCHHHHHHHHHHcC-CEEEEE
Confidence 9999999999998886 488877765 578999999999999765 3366778888888888 799999
Q ss_pred ccCCcccHHHHHHHHHHHHc
Q psy10443 161 SALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~ 180 (195)
||++|.|++++|++|.+.+.
T Consensus 149 Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNAININELFIEISRRIP 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred eCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999998765
No 48
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-34 Score=201.48 Aligned_cols=166 Identities=26% Similarity=0.379 Sum_probs=133.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-ccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~d~ 80 (195)
.+.+||+++|++|||||||+++|++.. +...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 356899999999999999999999643 344444444444556677899999999999999876 55667788999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|+|||++++++++.+.. |...+... .+++|+++|+||+|+... +.+..++.+.++..++ ++++
T Consensus 115 ~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~------------r~v~~~e~~~~a~~~~-~~~~ 180 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRC------------REVSVSEGRACAVVFD-CKFI 180 (211)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEE
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcC------------ceEeHHHHHHHHHHcC-CEEE
Confidence 999999999999998875 76666542 357999999999999754 4466677788888887 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++||++|.|++++|++|.+.+...+
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999886443
No 49
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.3e-34 Score=199.48 Aligned_cols=165 Identities=29% Similarity=0.554 Sum_probs=139.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999888776667665444 356677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++++++.+.. |+..+... .++.|+++|+||+|+... +.+..++...+++.++ ++++++|
T Consensus 99 ~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 164 (191)
T 2a5j_A 99 LVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESR------------RDVKREEGEAFAREHG-LIFMETS 164 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999998875 87777665 468999999999999764 3466778888998888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.9e-34 Score=196.69 Aligned_cols=164 Identities=27% Similarity=0.529 Sum_probs=141.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999988777777765544 455677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+.... ++.|+++|+||+|+... +.+..++++++++.++ ++++++|
T Consensus 93 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 158 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQ------------RDVTYEEAKQFAEENG-LLFLEAS 158 (179)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEeCcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988874 877776653 68999999999999654 3466778888998888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 159 a~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998764
No 51
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3.5e-34 Score=197.62 Aligned_cols=166 Identities=27% Similarity=0.475 Sum_probs=142.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999888777777765443 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 88 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 153 (186)
T 2bme_A 88 LVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETS 153 (186)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEec
Confidence 9999999999988874 77776654 468999999999999654 3466678888888888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|+++.+.+.+..
T Consensus 154 a~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887543
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=5.9e-34 Score=194.92 Aligned_cols=165 Identities=33% Similarity=0.559 Sum_probs=138.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 5689999999999999999999999888777777775544 556678888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|+|++++.++..+.. |+..+.... .+.|+++|+||+|+.. +.+..+++..++.....+++
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHTTCCCE
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCcccc-------------cccCHHHHHHHHHhcCCceE
Confidence 9999999999988864 777765532 5789999999999973 33667788888886666899
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++|++|.+.+.+.
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999988653
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3e-34 Score=194.93 Aligned_cols=167 Identities=31% Similarity=0.530 Sum_probs=141.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++.+||+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 3579999999999999999999999888777777775544 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... .++.|+++|+||+|+..... .+.+..++...++...+ ++++++|
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGG---------ERKVAREEGEKLAEEKG-LLFFETS 149 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCcccccc---------ccCCCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988875 77777655 46899999999999976421 13366677888888888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 150 AKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp TTTCTTHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999887643
No 54
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.3e-34 Score=194.79 Aligned_cols=163 Identities=30% Similarity=0.375 Sum_probs=126.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccc-cCCCCCCCccEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-LRPLSYPQTDVFLI 83 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~d~~i~ 83 (195)
.+||+++|++|||||||+++|.+..+...+.++. .......+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999999766544333333 444456677899999999999999998876 67777889999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+.... .++|+++|+||+|+.+. +.+..++...+++.++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 147 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIETS 147 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhc------------ccCCHHHHHHHHHHcC-CcEEEec
Confidence 999999999999885 777766654 38999999999999765 4477888999999998 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|+++.+.+...
T Consensus 148 a~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHhc
Confidence 999999999999999987654
No 55
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=1.1e-33 Score=211.49 Aligned_cols=179 Identities=72% Similarity=1.267 Sum_probs=159.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
...++|+++|.+|+|||||+++|+++.+...+.+|+...+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 35689999999999999999999999888888889888877778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..++...+..+++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999987668888888777999999999999987665555555666677888999999999986699999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|+.|.+.++.+
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999988754
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6.2e-34 Score=199.06 Aligned_cols=165 Identities=25% Similarity=0.475 Sum_probs=138.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEE--------------------------
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIP-------------------------- 53 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------- 53 (195)
|++.+.+||+|+|.+|+|||||+++|++..+...+.+|.+..+ ...+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7888899999999999999999999999988777777775443 3344455544
Q ss_pred -----------EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCc
Q psy10443 54 -----------VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122 (195)
Q Consensus 54 -----------~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 122 (195)
+.+.+||+||++.+...+..+++.+|++++|+|++++.++..+. .|+..+..... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-
Confidence 78999999999999999999999999999999999999998887 48777776543 99999999999
Q ss_pred ccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
... +.+..+++..+++..+ ++++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNK------------FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-------------CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccc------------ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 332 3466788889999888 699999999999999999999988764
No 57
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.2e-34 Score=198.91 Aligned_cols=168 Identities=29% Similarity=0.489 Sum_probs=141.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc--eeEEeCCE---------EEEEEEEeCCCCccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS--APFTVDGI---------PVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~~~D~~G~~~~~~~~~ 72 (195)
.+.+||+|+|.+|+|||||+++|+++.+...+.+|.+..+. ....+++. .+.+.+||+||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999998887777777655443 34444544 78899999999999999999
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+++++|++|+|+|++++.++..+. .|+..+.... .++|+++|+||+|+... +.+..+++..++.
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQ------------RAVKEEEARELAE 155 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGG------------CCSCHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHH
Confidence 9999999999999999999999887 4887777654 58999999999999764 3366778888888
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.++ ++++++||++|.|++++|++|.+.+.+...+
T Consensus 156 ~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 156 KYG-IPYFETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HcC-CCEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 888 6899999999999999999999988765443
No 58
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5.2e-34 Score=195.39 Aligned_cols=164 Identities=30% Similarity=0.534 Sum_probs=140.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++++||+|+|.+|+|||||+++|++..+...+.++.... ......+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999988877777776543 3556678888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 92 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDK------------RQVSTEEGERKAKELN-VMFIETS 157 (179)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc------------CcCCHHHHHHHHHHcC-CeEEEEe
Confidence 9999999999988874 77666554 458999999999999765 3466777888888888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 158 a~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987654
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5e-34 Score=197.98 Aligned_cols=165 Identities=26% Similarity=0.452 Sum_probs=141.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4679999999999999999999999888777777775554 344566777889999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+. .|+..+.... +++|+++|+||+|+... +.+..+++..+++.++ ++++++|
T Consensus 101 lV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 166 (192)
T 2fg5_A 101 IVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDI------------REVPLKDAKEYAESIG-AIVVETS 166 (192)
T ss_dssp EEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTTT-CEEEECB
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999887 4888777654 57999999999999654 3466778889998888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC--
T ss_pred CCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999987654
No 60
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-34 Score=195.85 Aligned_cols=164 Identities=26% Similarity=0.492 Sum_probs=138.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|.+|+|||||+++|.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999988877777777766666677788889999999999999998888899999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|++++.++..+.. |+..+... .++.|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 147 (172)
T 2erx_A 82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETS 147 (172)
T ss_dssp EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEec
Confidence 99999999887764 65555543 357999999999999765 3356677788888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 148 a~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 148 AKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTTTBSHHHHHHHHHHTCCSS
T ss_pred CCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999999876543
No 61
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=197.31 Aligned_cols=166 Identities=26% Similarity=0.533 Sum_probs=144.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 468999999999999999999999888777777765444 4667788888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|++++.++..+.. |+..+... ..+.|+++|+||+|+... +.+..++...++..++ ++++++||
T Consensus 95 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA 160 (196)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEEECT
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CcEEEEeC
Confidence 999999999998875 88777665 357999999999999765 4467778889999998 69999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++|.|++++|.+|.+.+.+...
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876554
No 62
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=4.3e-34 Score=193.29 Aligned_cols=163 Identities=33% Similarity=0.538 Sum_probs=141.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+++||+++|.+|+|||||+++|.+..+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 36799999999999999999999998887778888877767777888889999999999999999888889999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |+..+.... .+.|+++++||+|+... ....++...+++.++ ++++++|
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~~S 145 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAAR-------------TVESRQAQDLARSYG-IPYIETS 145 (166)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHT-CCEEEEC
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhhc-------------ccCHHHHHHHHHHcC-CeEEEec
Confidence 999999999988864 777776653 37999999999998763 245677888888888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|+++++++|.+.+.+
T Consensus 146 a~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=9.7e-34 Score=198.07 Aligned_cols=164 Identities=29% Similarity=0.559 Sum_probs=141.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4569999999999999999999999988777777765444 345667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+.... .+.|+++|+||+|+... +.+..+++..++..++ ++++++|
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 151 (203)
T 1zbd_A 86 LMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDE------------RVVSSERGRQLADHLG-FEFFEAS 151 (203)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTS------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHCC-CeEEEEE
Confidence 9999999999988874 887777654 68999999999999764 3466778888999888 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 152 a~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 64
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=8.1e-35 Score=204.07 Aligned_cols=169 Identities=25% Similarity=0.348 Sum_probs=109.3
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC--CCCCCccccee-eccceeEEeCCE--EEEEEEEeCCCCccccccCCCCC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVF-DNYSAPFTVDGI--PVSLGLWDTAGQEDYDRLRPLSY 75 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~~~D~~G~~~~~~~~~~~~ 75 (195)
|.+++.+||+|+|.+|||||||+++|++. .+...+.+|.+ +.....+.+++. .+.+.+||+||++.+...+..++
T Consensus 15 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 94 (208)
T 2yc2_C 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYW 94 (208)
T ss_dssp CSEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHH
Confidence 34456789999999999999999999998 77777778876 344566777776 88999999999999999999999
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC----CCCcEEEEeeCCCccc-chHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVGTKIDLRE-DRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+++|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+.. . +.+..+++..+++
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~~v~~~~~~~~~~ 161 (208)
T 2yc2_C 95 NGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQR------------HQVRLDMAQDWAT 161 (208)
T ss_dssp CCCCEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------------------CCCHHHHHHHHH
T ss_pred hhCcEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhh------------ccCCHHHHHHHHH
Confidence 9999999999999999999887 4888887764 4899999999999976 3 3466788899999
Q ss_pred HcCCceeEEeccCC-cccHHHHHHHHHHHHcCCC
Q psy10443 151 KIRAVKYMECSALT-QRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~-~~~v~~~~~~l~~~~~~~~ 183 (195)
.++ ++++++||++ |.|++++|++|.+.+.+..
T Consensus 162 ~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 162 TNT-LDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp HTT-CEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred HcC-CEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 988 7999999999 9999999999999876544
No 65
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=199.96 Aligned_cols=166 Identities=26% Similarity=0.487 Sum_probs=133.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999888777777765443 455677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 103 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 168 (200)
T 2o52_A 103 LVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LMFLETS 168 (200)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999998874 77777654 468999999999999654 3466678888888888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|.+|.+.+.+..
T Consensus 169 A~~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 169 ALTGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887543
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=6.8e-34 Score=193.29 Aligned_cols=163 Identities=26% Similarity=0.588 Sum_probs=134.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999888777777765444 3456677888899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|++++.++..+.. |+..+.... ++.|+++|+||+|+.. +.+..++...+++.++ ++++++||
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSA 146 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCCc-------------CccCHHHHHHHHHHcC-CeEEEEEC
Confidence 999999999988874 877776654 6899999999999933 3356677888888888 68999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|++|.+.+.+.
T Consensus 147 ~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=200.23 Aligned_cols=171 Identities=29% Similarity=0.459 Sum_probs=134.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
..+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999888777777766544 45677788889999999999999998888999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|+|||++++.++..+.. |+..+.... .++|+++|+||+|+...... ...+.+..+++..++...+ ++++++
T Consensus 105 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~~------~~~~~v~~~~~~~~~~~~~-~~~~~~ 176 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAAT------EGQKCVPGHFGEKLAMTYG-ALFCET 176 (199)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHH------TTCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccc------ccccccCHHHHHHHHHHcC-CeEEEe
Confidence 99999999999998874 888777653 57999999999999643211 1124566778888998888 699999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|.+|.+.+.+
T Consensus 177 SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 68
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=199.51 Aligned_cols=166 Identities=31% Similarity=0.398 Sum_probs=135.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccc-cCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-LRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~d~~ 81 (195)
...+||+|+|++|||||||+++|++......+.+++ .+.+...+.+++..+.+.+||++|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 356899999999999999999997643322223333 333455667899999999999999988764 667788899999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
|+|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++..++ +++++
T Consensus 101 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e 166 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIE 166 (195)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhcccc------------CCcCHHHHHHHHHHhC-CEEEE
Confidence 99999999999998875 877776653 48999999999999764 4467778888998888 68999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+||++|.|++++|++|++.+.+.+
T Consensus 167 ~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 167 TSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999886543
No 69
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=199.62 Aligned_cols=165 Identities=27% Similarity=0.556 Sum_probs=135.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3568999999999999999999999887766666664433 456677888899999999999999998899999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.+...+++++|
T Consensus 104 lV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~S 170 (192)
T 2il1_A 104 LVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REITRQQGEKFAQQITGMRFCEAS 170 (192)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTSTTCEEEECB
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCeEEEEe
Confidence 999999999999887 4887777654 57999999999999765 346677788888886558999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 171 A~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 171 AKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 70
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=196.54 Aligned_cols=165 Identities=24% Similarity=0.437 Sum_probs=141.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4569999999999999999999999888777777765443 345667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... ..+.|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 103 ~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 168 (193)
T 2oil_A 103 LVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQA------------REVPTEEARMFAENNG-LLFLETS 168 (193)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988874 77777654 368999999999999765 3366677888888887 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 169 a~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 71
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=7.2e-34 Score=196.68 Aligned_cols=164 Identities=30% Similarity=0.536 Sum_probs=137.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCcccc-ccCCCCCCCccE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYD-RLRPLSYPQTDV 80 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~-~~~~~~~~~~d~ 80 (195)
.++.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 35679999999999999999999999888777777765443 4566778888999999999999988 788889999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|+|+|++++.++..+.. |+..+... ..+.|+++|+||+|+... +.+..++.+.++..++ ++++
T Consensus 97 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 162 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSA------------IQVPTDLAQKFADTHS-MPLF 162 (189)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CCEE
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------ceeCHHHHHHHHHHcC-CEEE
Confidence 999999999999998875 87777665 468999999999999665 3466778888998888 6899
Q ss_pred EeccCCc---ccHHHHHHHHHHHHc
Q psy10443 159 ECSALTQ---RGLRQVFDEAVRAVL 180 (195)
Q Consensus 159 ~~Sa~~~---~~v~~~~~~l~~~~~ 180 (195)
++||+++ .|++++|.+|.+.+.
T Consensus 163 ~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 163 ETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9999999 999999999988764
No 72
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=215.09 Aligned_cols=176 Identities=73% Similarity=1.310 Sum_probs=150.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|+...+...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57899999999999999999999998888888888877777777778888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+|++++.++..+...|+..+....+++|+++|+||+|+...............+.+..++...+++.++..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 99999999999887568888887767899999999999976554333333333345666778888888885589999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.9e-33 Score=197.10 Aligned_cols=164 Identities=27% Similarity=0.538 Sum_probs=137.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4679999999999999999999999888777777764433 455667788889999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+.. +.+..++...++.....+++
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-------------cccCHHHHHHHHHhcCCceE
Confidence 999999999998886 4777665542 4789999999999973 33556778888875555889
Q ss_pred EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++||++|.|++++|++|.+.+.+
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987753
No 74
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.3e-35 Score=201.48 Aligned_cols=166 Identities=32% Similarity=0.549 Sum_probs=143.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|++..+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 3568999999999999999999999888777777765444 345566777788999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 166 (191)
T 3dz8_A 101 LMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEE------------RVVPTEKGQLLAEQLG-FDFFEAS 166 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEE
Confidence 9999999999998875 888887754 68999999999999765 4477788889999998 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|++|.+.+.+..
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 167 AKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999886543
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-33 Score=194.11 Aligned_cols=165 Identities=32% Similarity=0.591 Sum_probs=142.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 3579999999999999999999999988777777765444 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+.. +.+..++...+++..+ ++++++
T Consensus 93 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEA 157 (195)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-------------cccCHHHHHHHHHHcC-CEEEEe
Confidence 999999999998887 4888777653 5799999999999943 3356677888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
||+++.|++++|++|.+.+.+..
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999887654
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=4.4e-34 Score=198.74 Aligned_cols=164 Identities=23% Similarity=0.266 Sum_probs=131.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-----------ccceeecc-ceeE-EeCCEEEEEEEEeCCCCcccccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-----------VPTVFDNY-SAPF-TVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
.+.+||+++|++|||||||++.+.+ .+...+ .+|.+..+ .... .+++..+.+.+||+||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4679999999999999999966654 444443 23443332 2223 56777889999999999999999
Q ss_pred CCCCCCCccEEEEEEeCC------ChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 71 RPLSYPQTDVFLICYSVV------SPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+..+++++|++|+|||++ +.+++..+. .|+..+....+++|+++|+||+|+... +..++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~ 155 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPDA--------------LPVEM 155 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTTC--------------CCHHH
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhcccc--------------cCHHH
Confidence 999999999999999999 456666665 377777555678999999999999664 66678
Q ss_pred HHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 145 GQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.+++..++..+++++||++|.|++++|++|.+.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 888888888448999999999999999999999887654
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=5.4e-34 Score=201.34 Aligned_cols=165 Identities=30% Similarity=0.536 Sum_probs=139.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCE----------EEEEEEEeCCCCccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGI----------PVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~~~D~~G~~~~~~~~~ 72 (195)
.+.+||+|+|.+|||||||+++|++..+...+.+|....+ ...+.+++. .+.+.+||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4579999999999999999999999888776677765444 334555554 78899999999999999999
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+++.+|++|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++.
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQ------------REVNERQARELAD 169 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGG------------CCSCHHHHHHHHH
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccc------------cccCHHHHHHHHH
Confidence 99999999999999999999988874 877776543 68999999999999764 3466778888998
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.++ ++++++||+++.|++++|++|.+.+.+.
T Consensus 170 ~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 170 KYG-IPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HTT-CCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HCC-CcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 888 6899999999999999999999987654
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3.8e-33 Score=194.32 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=125.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
....||+|+|.+|||||||+++|++..+.. .+.+|.+.... . ++...+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-T--FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-E--EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-E--EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 467899999999999999999999998877 77777764322 2 2344567889999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh------C---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHHHHc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH------C---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLANKI 152 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~------~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (195)
+|||+++++++..+.. |+..+... . +++|+++|+||+|+........ +...... .+++..
T Consensus 92 ~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE---------LVEILDLTTLMGDH 161 (199)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH---------HHHHHTHHHHHTTS
T ss_pred EEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH---------HHHHhcchhhccCC
Confidence 9999999999998875 55444332 1 3899999999999976521111 1111111 111333
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCCCcccc
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 187 (195)
+ ++++++||++|.|++++|++|.+.+.+...+..
T Consensus 162 ~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 195 (199)
T 4bas_A 162 P-FVIFASNGLKGTGVHEGFSWLQETASRQSGKAG 195 (199)
T ss_dssp C-EEEEECBTTTTBTHHHHHHHHHHHHHHHC----
T ss_pred e-eEEEEeeCCCccCHHHHHHHHHHHHHHHhcccC
Confidence 4 789999999999999999999999877655443
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=2.5e-32 Score=189.46 Aligned_cols=165 Identities=27% Similarity=0.389 Sum_probs=130.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-ccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~d~ 80 (195)
++.+||+++|++|||||||+++|++. .+...+.++..+.+...+.+++..+.+.+||++|++. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 56799999999999999999999963 3444444444444556677899999999999999876 55666778888999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |...+... .+++|+++|+||+|+... +.+..++...++..++ ++++
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~------------r~v~~~~~~~~a~~~~-~~~~ 149 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRX------------REVSVSEGRAXAVVFD-XKFI 149 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEE
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhcc------------ccccHHHHHHHHHHhC-CceE
Confidence 999999999999998874 76666543 357999999999998754 4466677778888877 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||++|.|++++|.++.+.+...
T Consensus 150 e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 150 ETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999987543
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-32 Score=193.26 Aligned_cols=163 Identities=27% Similarity=0.595 Sum_probs=138.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.++|+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999888777777765444 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.. +.+..++...++..++ ++++++|
T Consensus 98 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 162 (213)
T 3cph_A 98 LVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESS 162 (213)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-------------CCSCHHHHHHHHHHHT-CCEEECB
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999998887 4877776654 4799999999999933 3356677888888888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|.+|.+.+.+
T Consensus 163 a~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 81
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=200.83 Aligned_cols=164 Identities=26% Similarity=0.550 Sum_probs=131.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3569999999999999999999999888776666665444 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 111 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vS 176 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETS 176 (199)
T ss_dssp ECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC--------------CCCCSCC-CHHHHTTT-CCBCCCC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCcc------------ccCCHHHHHHHHHHcC-CeEEEEE
Confidence 9999999999999875 888877654 47999999999999765 3345556777888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 177 A~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp C---HHHHHHHHHHTTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=2.7e-32 Score=190.16 Aligned_cols=157 Identities=21% Similarity=0.328 Sum_probs=118.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+++||+++|++|||||||+++|.++.+. .+.+|.... ...+.+++ +.+.+||+||++.++..+..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 56789999999999999999999988763 455665443 34566676 677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK---------- 151 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 151 (195)
|+|+++++++..+.. |+..+... ..++|+++|+||+|+... +..+++.++...
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--------------ISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--------------CCHHHHHHHHTCTTTCCCSSCC
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--------------CCHHHHHHHhCccccccccccc
Confidence 999999999998875 65555432 358999999999999653 344455555432
Q ss_pred ------cCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 152 ------IRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 152 ------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
...++++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1346899999999999999999997653
No 83
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=2.5e-33 Score=198.54 Aligned_cols=164 Identities=29% Similarity=0.512 Sum_probs=138.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|||||||+++|+.+.+...+.++.+... .....+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4679999999999999999999887766666666664333 455667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.++..+.. |+..+....+++|+++|+||+|+.... . ..+...++...+ ++++++||
T Consensus 93 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~Sa 156 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK-------------V-KAKSIVFHRKKN-LQYYDISA 156 (221)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSTTCCEEEEEECTTSSSCS-------------S-CGGGCCHHHHHT-CEEEECBG
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCcccccc-------------c-cHHHHHHHHHcC-CEEEEEeC
Confidence 9999999999999874 988888877899999999999997642 1 123445666677 68999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++|.|++++|.+|.+.+....
T Consensus 157 ~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GGTBTTTHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999887554
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-32 Score=187.04 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=122.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|.+|||||||+++|+++.+. .+.+|.+.. ...+.+++ +.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 357899999999999999999999988775 555665432 33455555 67779999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCce
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVK 156 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (195)
+|+|+++++++..+.. |+..+... ..+.|+++|+||+|+... ...++..+.... ...++
T Consensus 89 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 89 VVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQWH 153 (187)
T ss_dssp EEEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCEE
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--------------CCHHHHHHHhChhhhcCCCcE
Confidence 9999999999998875 66555543 368999999999999754 222333332221 12268
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++++||++|.|++++|++|.+.+....+..
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999987766544
No 85
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8e-33 Score=195.46 Aligned_cols=167 Identities=25% Similarity=0.383 Sum_probs=135.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
...+||+|+|.+|||||||+++|+++.+...+.++....... .... ++..+.+.+||+||++.+...+..+++++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 567999999999999999999999888776666666444332 2222 34448899999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+... +.+..++...++...+ ++++++
T Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 154 (218)
T 4djt_A 89 ILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNR------------QKISKKLVMEVLKGKN-YEYFEI 154 (218)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCC-CEEEEE
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CcEEEE
Confidence 9999999999999887 4877776653 45999999999999765 3366677778887777 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|.+|.+.+.....
T Consensus 155 Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 155 SAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp BTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred ecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999876554
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=1.1e-31 Score=185.99 Aligned_cols=156 Identities=21% Similarity=0.324 Sum_probs=121.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+++||+++|++|||||||+++|.++.+. .+.+|.... ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 46789999999999999999999998764 455565443 44566666 677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK---------- 151 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 151 (195)
|+|+++++++..... |+..+... ..+.|+++|+||+|+... +..+++.++...
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--------------VSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--------------CCHHHHHHHTTCSSCCC---CC
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--------------CCHHHHHHHhCCcccccccccc
Confidence 999999999998875 65555432 368999999999999763 233333333221
Q ss_pred -cCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 152 -IRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 152 -~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...++++++||++|.|++++|++|.+.
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 234689999999999999999998764
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=185.72 Aligned_cols=161 Identities=18% Similarity=0.267 Sum_probs=123.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++.. +...+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999887 555666666532 33445554 67779999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-C---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH--Hc--CC
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-C---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN--KI--RA 154 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~ 154 (195)
+|+|++++.++..+.. |+..+... . .+.|+++|+||+|+... ...++..++.. .+ ..
T Consensus 96 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhccCCc
Confidence 9999999999998875 55554433 2 58999999999999754 23344444442 11 23
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++++||++|.|++++|++|.+.+.+.
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999887543
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=3.1e-32 Score=188.32 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=123.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|+++.+...+.+|.+..+. .+... .+.+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 56799999999999999999999998887777777765543 23333 4677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH-H---cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN-K---IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... ..++|+++|+||+|+..... .++...... . ...+++
T Consensus 97 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 161 (188)
T 1zd9_A 97 MVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALD--------------EKELIEKMNLSAIQDREICC 161 (188)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCC--------------HHHHHHHhChhhhccCCeeE
Confidence 999999999998875 55444332 36899999999999976421 111111110 0 123678
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++|++|.+.+.+.
T Consensus 162 ~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 162 YSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999877554
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.98 E-value=1.6e-31 Score=181.80 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=122.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|+|||||+++|.++.+. .+.+|.+.. ...+.++ .+.+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999988774 345555432 2344555 4567799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHH-hhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPEL-KHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|+++++++..... |+..+ ... ..+.|+++|+||+|+........ +.......++...+ ++++++|
T Consensus 81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~S 149 (171)
T 1upt_A 81 VVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTSSE---------MANSLGLPALKDRK-WQIFKTS 149 (171)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHHTGGGCTTSC-EEEEECC
T ss_pred EEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCHHH---------HHHHhCchhccCCc-eEEEECc
Confidence 999999999988875 44444 332 36899999999999976521111 00000011112223 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 150 a~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999988654
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.98 E-value=4.5e-31 Score=182.10 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=124.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|++|||||||+++|+++. ...+.||.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 578999999999999999999999887 56666776533 33444554 567799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... .++.|+++|+||+|+..... .++..+... ....+++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--------------HHHHHHHhChhhccCCceEE
Confidence 999999999998875 55444332 36899999999999976421 122222111 0123689
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++|++|.+.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.98 E-value=1.8e-32 Score=185.35 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|+++.+.. +.||.+.. ...+.. ..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887753 45555422 222333 34678899999999999988899999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhh--hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH-----HHHcCCceeEE
Q psy10443 87 VVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL-----ANKIRAVKYME 159 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~--~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 159 (195)
+++++++..... |+..+.. ..++.|+++|+||+|+..... .++.... +... .+++++
T Consensus 77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~ 140 (164)
T 1r8s_A 77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMN--------------AAEITDKLGLHSLRHR-NWYIQA 140 (164)
T ss_dssp TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CEEEEE
T ss_pred CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCC--------------HHHHHHHhCcccccCc-cEEEEE
Confidence 999999998875 5555443 246899999999999966421 1111111 1112 267999
Q ss_pred eccCCcccHHHHHHHHHHHHcC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+||++|.|++++|++|.+.+.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC--
T ss_pred cccCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.98 E-value=2e-31 Score=183.22 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=119.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999877 4455555433 23455555 667799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... ..+.|+++|+||+|+.... ..++....... ...+++
T Consensus 95 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 95 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECM--------------TVAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp EEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHTTGGGCCSSCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCC--------------CHHHHHHHhCcccccCCceEE
Confidence 999999999998875 55444433 4689999999999996641 12222222110 122589
Q ss_pred EEeccCCcccHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+++||++|.|++++|++|.+.
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 999999999999999998764
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=2e-31 Score=185.48 Aligned_cols=165 Identities=15% Similarity=0.216 Sum_probs=121.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc---ceeEEe-CCEEEEEEEEeCCCCccccccC---CCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY---SAPFTV-DGIPVSLGLWDTAGQEDYDRLR---PLSYP 76 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~~~D~~G~~~~~~~~---~~~~~ 76 (195)
.+.+||+++|.+|||||||++++.+... .. ++....+ .....+ ++..+.+.+||+||++.|.... ..+++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 5689999999999999999998887432 22 2322222 122223 3566888999999999987776 78999
Q ss_pred CccEEEEEEeCCCh--hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----
Q psy10443 77 QTDVFLICYSVVSP--SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN---- 150 (195)
Q Consensus 77 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 150 (195)
++|++|+|||++++ +++..+. .|+..+....+++|+++|+||+|+......... .+.+..++...+++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET-----QRDIHQRANDDLADAGLE 168 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH-----HHHHHHHHHHHHHHTTCT
T ss_pred cCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHH-----HhHHHHHHHHHHHHhhhh
Confidence 99999999999997 5555555 366666556779999999999998764321110 02244556677777
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.++ ++++++||++ .|++++|..+++.+
T Consensus 169 ~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 555 7899999999 99999999999875
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.4e-31 Score=183.94 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=121.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|++|||||||+++|..+.+.. +.||.+.. ...+..++ +.+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 578999999999999999999999877643 44554422 23344454 567799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|+++++++..... |+..+... .++.|+++|+||+|+......... ........+...+ ++++++|
T Consensus 96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~S 164 (189)
T 2x77_A 96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASEAEI---------AEQLGVSSIMNRT-WTIVKSS 164 (189)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHH---------HHHTTGGGCCSSC-EEEEECC
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHH---------HHHhChhhccCCc-eEEEEcc
Confidence 999999999998875 54444332 358999999999999765211110 0000000111222 5799999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|+++++++|.+.+.+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=7.7e-32 Score=186.97 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=116.0
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+||+++|++|||||||+++|+++.+. .+.||.+.. ...+..++ +.+.+||+||++.+...+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 467899999999999999999999988764 344544422 22334444 67779999999999999989999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH-H----HHHcCCc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK-L----ANKIRAV 155 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 155 (195)
+|+|+++++++..+.. |+..+... .++.|+++|+||+|+..... .++... + +... .+
T Consensus 102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~-~~ 165 (192)
T 2b6h_A 102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMP--------------VSELTDKLGLQHLRSR-TW 165 (192)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CE
T ss_pred EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCC--------------HHHHHHHhCcccccCC-ce
Confidence 9999999999998875 55554432 35899999999999965421 111111 1 1112 25
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++++||++|.|++++|++|.+.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999988753
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.6e-31 Score=182.68 Aligned_cols=159 Identities=20% Similarity=0.316 Sum_probs=119.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|++|||||||+++|.+..+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999998754 3344554422 23344554 677799999999999888999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (195)
|+|+++++++..... |+..+... ..+.|+++|+||+|+..... .++..+... ....+++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 1fzq_A 90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--------------ASEIAEGLNLHTIRDRVWQI 154 (181)
T ss_dssp EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--------------HHHHHHHhCchhccCCceEE
Confidence 999999999998875 55544332 36799999999999976421 112211110 0122679
Q ss_pred EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++||++|.|++++|++|.+.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 155 QSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp EECCTTTCTTHHHHHHHHHHTC--
T ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5.7e-31 Score=181.00 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=119.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|++|||||||+++|+++.+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 6789999999999999999999998766 4444554422 23444554 667799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... ..+.|+++|+||+|+.... ..++....... ...+++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGAL--------------SASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCC--------------CHHHHHHHTTTTTCCSSCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCceEE
Confidence 999999999998875 65555543 4689999999999996642 12222222111 122579
Q ss_pred EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++||++|.|+++++++|.+.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999998754
No 98
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=4.9e-31 Score=185.78 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCE-EEEEEEEeCCCCccccc-cCCCCCCCccE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-PVSLGLWDTAGQEDYDR-LRPLSYPQTDV 80 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~~~D~~G~~~~~~-~~~~~~~~~d~ 80 (195)
..+.+||+++|++|||||||+++|+++.+...+.++...... +.+++. .+.+.+||+||++.+.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457899999999999999999999998887777655433322 455543 57888999999999987 78888999999
Q ss_pred EEEEEeCCChh-cHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhc----------CC---------
Q psy10443 81 FLICYSVVSPS-SFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQ----------NL--------- 137 (195)
Q Consensus 81 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~----------~~--------- 137 (195)
+++|||+++.. ++......|...+... .+++|+++|+||+|+............. ..
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555555566555442 3579999999999997653221110000 00
Q ss_pred ---CCccHHHHHHHHHHcC--CceeEEeccCCc------ccHHHHHHHHHHH
Q psy10443 138 ---SPVKREQGQKLANKIR--AVKYMECSALTQ------RGLRQVFDEAVRA 178 (195)
Q Consensus 138 ---~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~v~~~~~~l~~~ 178 (195)
+....++.+.|+.... .++++++||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0011111111222121 478999999999 9999999999875
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.8e-31 Score=183.89 Aligned_cols=168 Identities=23% Similarity=0.374 Sum_probs=118.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC--CCCCCcccceeeccc-eeEEe---CCEEEEEEEEeCCCCccccccCCCCCCCcc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVFDNYS-APFTV---DGIPVSLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
++||+++|++|||||||+++|.+. .+...+.+|.+..+. ....+ ++..+.+.+||++|+++|..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 455556666644432 22222 345678899999999999999889999999
Q ss_pred EEEEEEeCCCh-hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc---
Q psy10443 80 VFLICYSVVSP-SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV--- 155 (195)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (195)
++++|||++++ .++..+. .|+..+....++.|+++|+||+|+........ ...+....++..++..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 151 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQRKA---------CMSKITKELLNKRGFPAIR 151 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHHHH---------HHHHHHHHTTTCTTSCEEE
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhhHH---------HHHHHHHHHHHhcCCcchh
Confidence 99999999997 4777776 48888877667899999999999976432110 1123344555555532
Q ss_pred eeEEeccCCcc-cHHHHHHHHHHHHcCCC
Q psy10443 156 KYMECSALTQR-GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 156 ~~~~~Sa~~~~-~v~~~~~~l~~~~~~~~ 183 (195)
+++++||+++. |++++++.|.+.+...+
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred heEEEecccCchhHHHHHHHHHHHHhccc
Confidence 38999999996 99999999998886644
No 100
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=4.2e-29 Score=170.89 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=118.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.++|+++|.+|||||||+++|++..+...+.++..... ...+.+++..+ .+||+||++.+...+..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKI--TFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEE--EESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceE--EEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 5789999999999999999999999887665555543332 34566677654 59999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH-------cC-C
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK-------IR-A 154 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~ 154 (195)
+|+|++++....... ++..+.. .++|+++|+||+|+..... ++....... ++ .
T Consensus 84 ~v~d~~~~~~~~~~~--~l~~~~~--~~~p~ilv~nK~Dl~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 144 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE--AINHAKA--ANVPIIVAINKMDKPEANP---------------DRVMQELMEYNLVPEEWGGD 144 (178)
T ss_dssp EEEETTCCCCHHHHH--HHHHHGG--GSCCEEEEEETTTSSCSCH---------------HHHHHHHTTTTCCBTTTTSS
T ss_pred EEEECCCCCcHHHHH--HHHHHHh--CCCCEEEEEECccCCcCCH---------------HHHHHHHHhcCcChhHcCCc
Confidence 999999854333222 2222322 3789999999999976421 111111111 11 2
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++++++||++|.|++++|++|.+.+...+.
T Consensus 145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 145 TIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred ccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 589999999999999999999998765544
No 101
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=2.9e-29 Score=174.90 Aligned_cols=164 Identities=30% Similarity=0.540 Sum_probs=136.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...++|+++|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999888777777764333 456778999999999999999999988888899999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|+++..++..+.. |+..+... ..+.|+++++||+|+.+. +....++++.++...+ +.++++|
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~~d~S 148 (199)
T 2f9l_A 83 LVYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIETS 148 (199)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CeEEEEe
Confidence 9999999999887764 77666554 357899999999999764 3355667888888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|+++.|++++|+.|.+.+.+
T Consensus 149 al~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=185.53 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=123.1
Q ss_pred CcceEEEEEcCC---------CCchHHHHHHhhc---CCCCCCcccce-eecc-ceeE--------------EeCCEEEE
Q psy10443 4 GRPIKCVVVGDG---------TVGKTCMLISYTT---DSFPGEYVPTV-FDNY-SAPF--------------TVDGIPVS 55 (195)
Q Consensus 4 ~~~~~i~v~G~~---------~~GKtsli~~l~~---~~~~~~~~~t~-~~~~-~~~~--------------~~~~~~~~ 55 (195)
++.+||+|+|.+ |||||||+++|++ ..+...+.+|+ ...+ ...+ .+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 567999999999 9999999999999 55666677765 2222 1221 14677889
Q ss_pred EEEEe-----------------------CCCCccccccCCCCCC---------------------CccEEEEEEeCCCh-
Q psy10443 56 LGLWD-----------------------TAGQEDYDRLRPLSYP---------------------QTDVFLICYSVVSP- 90 (195)
Q Consensus 56 l~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~- 90 (195)
+.+|| ++|+++|..++..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888888 79999999999998
Q ss_pred -hcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCccc
Q psy10443 91 -SSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167 (195)
Q Consensus 91 -~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (195)
.+++.+.. |+..+... .+++|+++|+||+|+..... + ++...++.....++++++||++|.|
T Consensus 177 ~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~------------v--~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 177 NRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERY------------I--RDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp --CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHH------------H--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred hhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHH------------H--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence 99998874 77776653 36899999999999965421 2 4566777765347899999999999
Q ss_pred HHHHHHHHHHHHc
Q psy10443 168 LRQVFDEAVRAVL 180 (195)
Q Consensus 168 v~~~~~~l~~~~~ 180 (195)
++++|++|.+.+.
T Consensus 242 v~elf~~l~~~l~ 254 (255)
T 3c5h_A 242 VDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.9e-31 Score=196.17 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=116.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|.++.+...+ ||....+ ..+... .+.+.+||+||++.+..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 46789999999999999999999988764332 3433222 223333 4677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH-HH---cCCceeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA-NK---IRAVKYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~ 158 (195)
|||++++.++..+...|...+... .+++|+++|+||+|+..... .++..... .. ...++++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~~ 304 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--------------AAEITDKLGLHSLRHRNWYIQ 304 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHHTCTTCCSSCEEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--------------HHHHHHHhchhhhhcCCCEEE
Confidence 999999999998876555555443 36899999999999976532 11111111 10 1226799
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||++|.|++++|++|.+.+.+.
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEECCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999988653
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.97 E-value=6.6e-30 Score=188.98 Aligned_cols=168 Identities=17% Similarity=0.252 Sum_probs=128.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccc-----cccCCCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-----DRLRPLSYP 76 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-----~~~~~~~~~ 76 (195)
..+||+++|++|||||||+++|+++.. .. .+.+|....+. ...+++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999998732 22 23344433332 344444 578889999999988 778888899
Q ss_pred CccEEEEEEeCCChhcHHHHHHhh---HHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKW---YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++|++|+|||+++++++..+.. | +..+....+++|+++|+||+|+......... ..+..+++.+++..++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~------~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREEL------FQIMMKNLSETSSEFG 152 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH------HHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHH------HHHHHHHHHHHHHHcC
Confidence 9999999999999999988863 5 4444455778999999999999874332110 0134567888999887
Q ss_pred C--ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 A--VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
. ++++++||++ .|+.++|..+++.+.+.
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence 3 7999999999 89999999998876543
No 105
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.1e-28 Score=169.48 Aligned_cols=161 Identities=29% Similarity=0.513 Sum_probs=136.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..++|+++|++|||||||++++.+..+...+.+|.+..+ ...+.+++..+.+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 458999999999999999999999888777777775544 5677889999999999999999999999899999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++..+++.+.. |+..+... ..+.|+++++||+|+... +....++++.++...+ +.++++|+
T Consensus 108 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~ld~Sa 173 (191)
T 1oix_A 108 VYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNG-LSFIETSA 173 (191)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999988887763 77666543 357899999999999754 3355667888888887 68999999
Q ss_pred CCcccHHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~ 179 (195)
+++.|++++|+.|.+.+
T Consensus 174 ld~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 174 LDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998875
No 106
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=2e-30 Score=190.34 Aligned_cols=164 Identities=12% Similarity=0.151 Sum_probs=119.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccccc---cCCCCCCCccEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR---LRPLSYPQTDVF 81 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~---~~~~~~~~~d~~ 81 (195)
||+++|++|||||||++++.+..++. .+.+|.+..+.. ++ ..+++++||||||++|.. .+..|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999988764432 244555544432 32 358899999999999964 357889999999
Q ss_pred EEEEeCCCh--hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCc
Q psy10443 82 LICYSVVSP--SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAV 155 (195)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 155 (195)
|+|||++++ ++..... .|+..+....+++|+++++||+|+.......... |.+..++++++++. ++ +
T Consensus 77 IlV~Ditd~~~~~~~~l~-~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~-----R~V~~~~~~~la~~~~~~~~-i 149 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNLA-MIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQ-----RDIMQRTGEELLELGLDGVQ-V 149 (331)
T ss_dssp EEECCCSSCTTHHHHHHH-HHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHH-----HHHHHHHHHTTSSSSCSCCC-E
T ss_pred EEEEECCchHHHHHHHHH-HHHHHHhhcCCCCcEEEEEECcccCchhhhhhHH-----HHhhHHHHHHHHhhcccccC-c
Confidence 999999987 2222222 2445455557899999999999998654311100 22445566666664 44 7
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++|||++ .++.++|..+++.+.+..
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred eEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 899999998 589999999999887554
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=6.9e-29 Score=168.10 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=111.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccc-eeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLSYP 76 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~ 76 (195)
|++++|+++|++|||||||+++|.+..+...+.++ +.......+.+++ ..+.+||+||++.+.. +...+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 45789999999999999999999987654333333 2333344455565 4677999999988753 2244554
Q ss_pred --CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 77 --QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 77 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++|++++|+|+++.+... .|+..+... +.|+++|+||+|+.... .+.. +...++..++
T Consensus 79 ~~~~~~~i~v~D~~~~~~~~----~~~~~~~~~--~~p~ilv~nK~Dl~~~~------------~~~~-~~~~~~~~~~- 138 (165)
T 2wji_A 79 NEKPDLVVNIVDATALERNL----YLTLQLMEM--GANLLLALNKMDLAKSL------------GIEI-DVDKLEKILG- 138 (165)
T ss_dssp HHCCSEEEEEEETTCHHHHH----HHHHHHHHT--TCCEEEEEECHHHHHHT------------TCCC-CHHHHHHHHT-
T ss_pred cCCCCEEEEEecCCchhHhH----HHHHHHHhc--CCCEEEEEEchHhcccc------------Chhh-HHHHHHHHhC-
Confidence 799999999999865432 255555543 79999999999986532 1221 3566777777
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++++||++|.|++++|+++.+.+
T Consensus 139 ~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998865
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1.9e-28 Score=192.30 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=121.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|.+|||||||+++|+++.+.. +.+|.+..+. .+.. ..+.+.+|||||++.+..++..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE-EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE-EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 467999999999999999999999987643 4455543322 2333 34677899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCceeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (195)
|||+++++++..+...|...+... ..++|+++|+||+|+..... .++...... ....++++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--------------PHEIQEKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--------------HHHHHHHTTCTTCCSSCEEEE
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--------------HHHHHHHhchhhhhcCCeEEE
Confidence 999999999999876344444432 35899999999999976421 111111110 01225799
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
++||++|.|++++|++|.+.+.+..++
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC-----
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987655543
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=2.5e-28 Score=173.62 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=113.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCcccc---------ccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD---------RLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~~~~~ 73 (195)
.+.++|+|+|.+|||||||+++|++..+.. .+..++..........++ +.+.+||+||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 457999999999999999999999876531 222222222222233344 567799999983211 11123
Q ss_pred CCCCccEEEEEEeCCChhcHHHH-HHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH---HHHHHHH
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNV-TSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR---EQGQKLA 149 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 149 (195)
++..+|++|+|+|++++.++... ...|+..+....++.|+++|+||+|+.... .+.. +....++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~ 172 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD------------SLSIDNKLLIKQIL 172 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch------------hhHHHHHHHHHHHH
Confidence 46788999999999998776422 123666666655689999999999997652 2332 2455566
Q ss_pred HHcC-CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 150 NKIR-AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
...+ .++++++||++|.|++++|++|.+.+.+.+
T Consensus 173 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 173 DNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp HHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 6553 268999999999999999999999886554
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.96 E-value=4.7e-29 Score=197.06 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=122.1
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecccee-------EE--eCCEEEEEEEEeCCCCccccccCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-------FT--VDGIPVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~-------~~--~~~~~~~l~~~D~~G~~~~~~~~~ 72 (195)
...+.+||+++|.+|||||||+++|++..+...+.+|.+..+... .. .++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 346789999999999999999999999888777777775554321 11 233457888999999999999999
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+++.+|++|+|+|+++.+.. . +|+..+....++.|+++|+||+|+... +.+..++.+.++...
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~~---~-~~~~~l~~~~~~~pvilV~NK~Dl~~~------------~~v~~~~~~~~~~~~ 180 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSNK---H-YWLRHIEKYGGKSPVIVVMNKIDENPS------------YNIEQKKINERFPAI 180 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGGH---H-HHHHHHHHHSSSCCEEEEECCTTTCTT------------CCCCHHHHHHHCGGG
T ss_pred HHccCCcEEEEEEeCCCchhH---H-HHHHHHHHhCCCCCEEEEEECCCcccc------------cccCHHHHHHHHHhc
Confidence 999999999999999876433 3 588888888778999999999999765 335667777777777
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+ .+++++||++|.|+++++..+.+.+.+...
T Consensus 181 ~-~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 181 E-NRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp T-TCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred C-CceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 7 689999999999999999999998876543
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=5.1e-28 Score=162.82 Aligned_cols=150 Identities=19% Similarity=0.151 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccc-------cccCCCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-------DRLRPLSYPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~~~ 77 (195)
.||+++|.+|+|||||+++|.+..+. ..+.+++..........++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 33334444444455566665 5569999998873 3334557889
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|++++|+|++++.+.... .+...+.. .+.|+++|+||+|+.... ++..+++ .++..++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~ 138 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADY--EVAEYLRR--KGKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDP 138 (161)
T ss_dssp CSEEEEEEESSSCCCHHHH--HHHHHHHH--HTCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSC
T ss_pred CCEEEEEEECCCcccHhHH--HHHHHHHh--cCCCEEEEEECcccccch----------------HhHHHHH-hCCCCCe
Confidence 9999999999986554332 23344443 378999999999997652 1122233 4553479
Q ss_pred EEeccCCcccHHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++||++|.|++++|++|.+.+
T Consensus 139 ~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 139 IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecccCCChHHHHHHHHHhC
Confidence 9999999999999999998865
No 112
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=4.1e-28 Score=168.19 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=112.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC----------CccccccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG----------QEDYDRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~~~ 73 (195)
...++|+++|.+|+|||||+++|++..+ ..+.++.+..........+ ..+.+||+|| ++.+..++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 4568999999999999999999998763 2333333332222222112 2456999999 5556655555
Q ss_pred CCCC---ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 74 SYPQ---TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+++. +|++++|+|+++..+..... +...+... +.|+++|+||+|+...... ....++...++.
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~~~ 163 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSER----------AKKLEEHRKVFS 163 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH----------HHHHHHHHHHHH
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHH----------HHHHHHHHHHHh
Confidence 5554 49999999998765544332 33333333 7899999999999754321 123355666777
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+.++++++||++|.|++++|++|.+.+.+
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 6666789999999999999999999998754
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2.5e-28 Score=169.49 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=105.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCC----------CccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAG----------QEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G----------~~~~~~~~~ 72 (195)
.+.++|+|+|.+|||||||+++|++..+...+.++.+..... ....++ .+.+||+|| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 457999999999999999999999887554444444333221 222333 467999999 666666666
Q ss_pred CCCCCc---cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSYPQT---DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.+++.+ |++++|+|++++.+..+.. +...+.. .+.|+++|+||+|+........ ..++..+..
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~----------~~~~~~~~~ 163 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY--YGIPVIVIATKADKIPKGKWDK----------HAKVVRQTL 163 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCGGGHHH----------HHHHHHHHH
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCChHHHHH----------HHHHHHHHH
Confidence 666655 9999999999987776543 3334433 4789999999999976532111 012222211
Q ss_pred HHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 150 NKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
......+++++||++|.|++++|++|.+.+.
T Consensus 164 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 164 NIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 1123378999999999999999999998764
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2.4e-28 Score=168.79 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC-----------CccccccCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG-----------QEDYDRLRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G-----------~~~~~~~~~~~~ 75 (195)
+||+++|.+|||||||+++|++..+...+.++.... ......+ .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999988766555544222 1222333 466999999 566666666677
Q ss_pred CC-ccEEEEEEeCCChhcHHHHHHhhHHH---------Hhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 76 PQ-TDVFLICYSVVSPSSFDNVTSKWYPE---------LKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 76 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~---------~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+. ++++++|+++.|..++..+...|... ... ...++|+++|+||+|+.... .++
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------------~~~ 141 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---------------QEV 141 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---------------HHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---------------HHH
Confidence 76 77777777777777777664445432 111 12479999999999997652 345
Q ss_pred HHHHHHHcCC------ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 145 GQKLANKIRA------VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 145 ~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
...++..++. .+++++||++|.|++++|++|.+.+.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 6677777763 247999999999999999999998876544
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=6e-27 Score=169.01 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=116.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC------CCCC-
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR------PLSY- 75 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~------~~~~- 75 (195)
++.++|+++|++|||||||+++|++..+. .++++++.......+..++ +.+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 56799999999999999999999986542 2333344333344444445 566799999998876533 4444
Q ss_pred -CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 76 -PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
..+|++++|+|+++.++... |...+... ++|+++++||+|+.... .+. .+...+++.++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~----~~~~l~~~--~~pvilv~NK~Dl~~~~------------~i~-~~~~~l~~~lg- 140 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY----LLLEILEM--EKKVILAMTAIDEAKKT------------GMK-IDRYELQKHLG- 140 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH----HHHHHHTT--TCCEEEEEECHHHHHHT------------TCC-BCHHHHHHHHC-
T ss_pred hcCCCEEEEEeCCCchhhHHH----HHHHHHhc--CCCEEEEEECcCCCCcc------------chH-HHHHHHHHHcC-
Confidence 58999999999998765432 44444443 79999999999986542 122 23667788888
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++++++||++|.|++++|+++.+.+..
T Consensus 141 ~~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 799999999999999999999997753
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=4.3e-28 Score=165.25 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=110.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC--------CC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR--------PL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--------~~ 73 (195)
.+.++|+++|.+|||||||+++|.+..+ ...+.+++.+.....+.+++.. +.+||+||++.+.... ..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHH
Confidence 3568999999999999999999998753 2344555555555667777765 5699999987643211 13
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
+++.+|++++|+|++++.++... .|+..+.... .++|+++|+||+|+..... .. +..
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~~--------~~~- 137 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETL-----------GM--------SEV- 137 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------EE--------EEE-
T ss_pred HHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchh-----------hh--------hhc-
Confidence 57899999999999998886533 3555555443 4799999999999854210 00 011
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+++++||++|.|++++|++|.+.+.
T Consensus 138 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 138 NGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred cCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 2368999999999999999999988764
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.3e-27 Score=163.64 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=116.2
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccc-eeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLS 74 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~ 74 (195)
+.+++++|+++|++|||||||+++|++..+...+.++ +.......+..++ +.+.+||+||++.+.. ++..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 4578899999999999999999999986543222222 2333344455555 5667999999988752 34444
Q ss_pred CC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 75 YP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 75 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
++ .++++++|+|+++.+ ... .|...+.. .+.|+++++||+|+.... .+. .+...++..+
T Consensus 81 ~~~~~~~~~i~v~d~~~~~---~~~-~~~~~~~~--~~~piilv~nK~Dl~~~~------------~~~-~~~~~~~~~~ 141 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATALE---RNL-YLTLQLME--MGANLLLALNKMDLAKSL------------GIE-IDVDKLEKIL 141 (188)
T ss_dssp HHHHCCSEEEEEEEGGGHH---HHH-HHHHHHHT--TTCCEEEEEECHHHHHHT------------TCC-CCHHHHHHHH
T ss_pred HhccCCCEEEEEecchhHH---HHH-HHHHHHHh--cCCCEEEEEEhhhccccc------------cch-HHHHHHHHHh
Confidence 43 589999999987643 333 36555554 378999999999986542 122 3466777777
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+ ++++++||+++.|++++|+++.+.+....
T Consensus 142 ~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 142 G-VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp T-SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred C-CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 7 68999999999999999999999887654
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.6e-26 Score=169.72 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=123.9
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----------cc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----------RL 70 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------~~ 70 (195)
+.+.-.|+++|.+|||||||+++|++..+. .....++..........+ ..+.+.||||||+..+. ..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 356678999999999999999999998764 333344444444444444 13456699999986654 44
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
...+++.+|++++|+|++++.+..+.. .|+..+... +.|+++|+||+|+..... ...+....+..
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~~------------~~~~~~~~l~~ 150 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPAK------------NVLPLIDEIHK 150 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSGG------------GGHHHHHHHHH
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCHH------------HHHHHHHHHHH
Confidence 456778899999999999988887765 367777764 799999999999973221 33455666777
Q ss_pred Hc-CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KI-RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+ ...+++++||++|.|++++++.|.+.+.+.
T Consensus 151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 151 KHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 76 456899999999999999999999988654
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=2.7e-27 Score=171.75 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=112.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCCCC-
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLSYP- 76 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~- 76 (195)
..++|+++|++|||||||+++|++.. +..++++++...... .++. .+.+.+||+||+..+.. +...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 36899999999999999999999865 344454444332222 3343 56677999999988752 3344554
Q ss_pred -CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 77 -QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 77 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
.+|++++|+|+++.++.. +|...+.. .++|+++++||+|+.... .+. .+...++..++ +
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~------------~~~-~~~~~l~~~lg-~ 138 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQ------------GKK-INVDKLSYHLG-V 138 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHT-S
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcC------------CcH-HHHHHHHHHcC-C
Confidence 699999999999865543 24444444 379999999999986542 122 34567777887 6
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+++++||++|.|++++|+++.+.+.
T Consensus 139 ~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred CEEEEEccCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988754
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=2e-27 Score=173.00 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=113.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC----------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP---------- 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~---------- 72 (195)
|+.++|+++|.+|+|||||+++|++..+. .++.+++.+.....+..++. .+.+||+||+..+.....
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHH
Confidence 46899999999999999999999987542 22333344444445555554 455999999988763221
Q ss_pred CC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+ .+.+|++++|+|+++.++... |...+... ++|+++|+||+|+..... . ......+..
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~------------~-~~~~~~l~~ 139 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN------------I-RIEIDALSA 139 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT------------E-EECHHHHHH
T ss_pred HHHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh------------H-HHHHHHHHH
Confidence 12 268999999999998665443 33334433 799999999999865421 1 123456677
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.++ ++++++||++|.|+++++++|.+.+...
T Consensus 140 ~lg-~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 140 RLG-CPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHT-SCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred hcC-CCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 777 7999999999999999999998877644
No 121
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=4.4e-26 Score=167.72 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=112.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--------cccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--------DRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~ 73 (195)
.+..+|+++|.+|||||||+++|++..+. .....|+..........++ ..+.+|||||.... ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 56778999999999999999999998764 2233344433333333444 56679999998763 344556
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++.+|++++|+|++++.+..+ ..+...+....++.|+++|+||+|+...... ..+....+ .+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~~~---~~ 145 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPEE------------AMKAYHEL---LP 145 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHHH------------HHHHHHHT---ST
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchHH------------HHHHHHHh---cC
Confidence 7899999999999998755443 2234556555567999999999999765320 01122222 34
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+++++||++|.|++++++.|.+.+.+
T Consensus 146 ~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 EAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 4578999999999999999999887643
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=7.7e-27 Score=165.23 Aligned_cols=166 Identities=15% Similarity=0.074 Sum_probs=107.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC---CCCcccceeeccceeEEeC-CEEEEEEEEeCCCCcc----------ccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF---PGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQED----------YDR 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~----------~~~ 69 (195)
...++|+|+|.+|+|||||+++|++... .....+++... ....+. .....+.+|||||... +..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 4578999999999999999999998752 22222232221 112222 2235667999999432 233
Q ss_pred cCCCCCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 70 LRPLSYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 70 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
+...+++ .+|++++|+|++++.+.... .|+..+.. .++|+++|+||+|+........ ..++..
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~----------~~~~~~ 170 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDR--RMIEWFAP--TGKPIHSLLTKCDKLTRQESIN----------ALRATQ 170 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHGG--GCCCEEEEEECGGGSCHHHHHH----------HHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHH--HHHHHHHh--cCCCEEEEEeccccCChhhHHH----------HHHHHH
Confidence 3334444 48899999999876443332 35566655 3789999999999976543211 112222
Q ss_pred HHHHHc------CCceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 147 KLANKI------RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 147 ~~~~~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
+....+ ...+++++||++|.|++++|++|.+.+......
T Consensus 171 ~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 171 KSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence 333332 557899999999999999999999998766543
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=6.4e-27 Score=168.61 Aligned_cols=150 Identities=14% Similarity=0.218 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc----------cCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR----------LRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----------~~~~~~ 75 (195)
.+|+++|.+|||||||+++|++.... .++++++.+.....+..++. .+.+||+||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 38999999999999999999987532 33344444445556667776 556999999987764 344456
Q ss_pred --CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 76 --PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++|++|+|+|+++.++...+. ..+... +.|+++|+||+|+..... .. .....+...++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~~~--~~pvilv~NK~Dl~~~~~------------~~-~~~~~l~~~lg 140 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT----SQLFEL--GKPVVVALNMMDIAEHRG------------IS-IDTEKLESLLG 140 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH----HHHTTS--CSCEEEEEECHHHHHHTT------------CE-ECHHHHHHHHC
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH----HHHHHc--CCCEEEEEEChhcCCcCC------------cH-HHHHHHHHHcC
Confidence 8899999999999876554433 333333 789999999999876431 11 12455677777
Q ss_pred CceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
++++++||++|.|++++++++.+.
T Consensus 141 -~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 -CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred -CCEEEEECCCCCCHHHHHHHHHhh
Confidence 799999999999999999999887
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=3.7e-25 Score=171.51 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=98.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|+|||||+|+|++.. +...+.+|+.+.....+.+++. .+.+|||||+..+... ...+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 46899999999999999999999874 3455566666666677777775 4569999998776543 3447
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++++|+|++++.+...... +...+.. ..+.|+++|+||+|+..... . ..+.+... +.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~-l~~~piIvV~NK~Dl~~~~~------------~---~~~~l~~~-~~ 371 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAA-HPAAKFLTVANKLDRAANAD------------A---LIRAIADG-TG 371 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHH-CTTSEEEEEEECTTSCTTTH------------H---HHHHHHHH-HT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHh-cCCCCEEEEEECcCCCCccc------------h---hHHHHHhc-CC
Confidence 889999999999999887753321 2222222 22799999999999976532 1 11233333 12
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+++++||++|.|+++++++|.+.+.
T Consensus 372 ~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 67999999999999999999999887
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1e-25 Score=164.00 Aligned_cols=158 Identities=16% Similarity=0.059 Sum_probs=113.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCCC-
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLSY- 75 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~- 75 (195)
|+.++|+++|++|||||||+++|++..+.. .+..++.......+..++.. +.+||+||+..+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhh
Confidence 467899999999999999999999875532 22223333334455666655 56999999987765 344444
Q ss_pred -CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 76 -PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
.++|++++|+|+++.+... +|...+... ...|+++++||+|+..... ... +...+.+.++
T Consensus 79 ~~~~d~vi~v~D~~~~~~~~----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~------------~~~-~~~~l~~~lg- 139 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMRNL----FLTLELFEM-EVKNIILVLNKFDLLKKKG------------AKI-DIKKMRKELG- 139 (271)
T ss_dssp TTCCSEEEEEEEGGGHHHHH----HHHHHHHHT-TCCSEEEEEECHHHHHHHT------------CCC-CHHHHHHHHS-
T ss_pred ccCCcEEEEEecCCcchhhH----HHHHHHHhc-CCCCEEEEEEChhcCcccc------------cHH-HHHHHHHHcC-
Confidence 6899999999999864322 233333332 1389999999999875432 111 2566777787
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++++||++|.|+++++..+.+.+...
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 140 VPVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 7999999999999999999999987544
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=4.6e-26 Score=175.87 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCc----------cccccCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE----------DYDRLRP 72 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~ 72 (195)
..+||+++|.+|||||||+++|++... ...+.+++.+.....+..++.. +.+|||||+. .|...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 568999999999999999999998764 3455666666666677778775 5599999973 3332222
Q ss_pred -CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH-HHHHH
Q psy10443 73 -LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG-QKLAN 150 (195)
Q Consensus 73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (195)
.+++.+|++++|+|++++.+.++.. |...+... +.|+++|+||+|+.+... ...++. ..+..
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~------------~~~~~~~~~~~~ 315 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDKDE------------STMKEFEENIRD 315 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCCCT------------THHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCcch------------HHHHHHHHHHHH
Confidence 3677899999999999998887763 66666543 799999999999976521 222222 22222
Q ss_pred H---cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 K---IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
. ....+++++||++|.|++++|+.+.+.+..
T Consensus 316 ~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 316 HFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred hcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 2 234789999999999999999999887653
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=9.6e-26 Score=174.99 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=117.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCC----------CccccccC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG----------QEDYDRLR 71 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~ 71 (195)
...++|+++|.+|+|||||+++|++.. ....+.+++.+.....+..++.. +.+||||| ++.|...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHH
Confidence 357899999999999999999999764 23556666677666777788774 55999999 56665554
Q ss_pred C-CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 72 P-LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 72 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
. .+++.+|++++|+|+++....++. .|...+.. .+.|+++|+||+|+.... ....++..+.++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~--~~~~~ilv~NK~Dl~~~~------------~~~~~~~~~~~~ 334 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKD------------ESTMKEFEENIR 334 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCC------------SSHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHH--cCCCEEEEEEChhcCCCc------------hHHHHHHHHHHH
Confidence 4 367889999999999986554443 36666655 379999999999997652 244455555555
Q ss_pred Hc----CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KI----RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.. +..+++++||++|.|++++|+++.+.+...
T Consensus 335 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 335 DHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp HHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 43 347899999999999999999999877433
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-26 Score=162.79 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=100.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCC---
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQ--- 77 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~--- 77 (195)
.+.++|+++|++|+|||||+++|.+..+.. .+.++....+ ..+.+.+||+||++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 467999999999999999999999987643 2333333222 34567799999999998888888877
Q ss_pred -ccEEEEEEeCC-ChhcHHHHHHhhHHHHhh-----hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 78 -TDVFLICYSVV-SPSSFDNVTSKWYPELKH-----HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 78 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+|++|+|+|++ +++++..... |+..+.. ...++|+++|+||+|+.......... ....++...++.
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~------~~l~~~~~~~~~ 154 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIK------DALESEIQKVIE 154 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHH------HHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHH------HHHHHHHHHHHH
Confidence 89999999999 8888888775 4444432 23589999999999997653211100 011344556666
Q ss_pred HcCCceeEEeccCCccc
Q psy10443 151 KIRAVKYMECSALTQRG 167 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~ 167 (195)
..+ .+++++||++|.+
T Consensus 155 ~~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 155 RRK-KSLNEVERKINEE 170 (218)
T ss_dssp HHH-HHHHC--------
T ss_pred HHh-ccccccccccccc
Confidence 655 5788888888764
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=7.9e-25 Score=167.42 Aligned_cols=172 Identities=15% Similarity=0.097 Sum_probs=117.2
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCc--ccce-eec-------------cceeEEe---CCEEEEEEEEeCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY--VPTV-FDN-------------YSAPFTV---DGIPVSLGLWDTA 62 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~--~~t~-~~~-------------~~~~~~~---~~~~~~l~~~D~~ 62 (195)
..++.++|+++|.+|+|||||+++|++....... ..+. ... ....... ......+.+||+|
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999985332211 0000 000 0000000 1233678899999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
|++.|......++..+|++++|+|++++.+...... |+..+... ...|+++++||+|+........ ..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~----------~~ 151 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII-GVKNLIIVQNKVDVVSKEEALS----------QY 151 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH-TCCCEEEEEECGGGSCHHHHHH----------HH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc-CCCCEEEEEECccccchHHHHH----------HH
Confidence 999999888889999999999999998765555443 54554443 1258999999999976543211 11
Q ss_pred HHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 143 EQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 143 ~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
++..++.... ..++++++||++|.|+++++++|.+.+..+...
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~ 196 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD 196 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC
Confidence 2233333322 236899999999999999999999987665543
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=5.6e-25 Score=170.63 Aligned_cols=151 Identities=21% Similarity=0.303 Sum_probs=114.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCc-ccccc--------CCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE-DYDRL--------RPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~-~~~~~--------~~~~ 74 (195)
.++|+++|.+|+|||||+|+|++.. +..++.+|+.+.....+.+++.. +.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999874 35667777777777777888765 5599999987 65432 2345
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++|+|+|++++.+.++.. ++..+ .+.|+++|+||+|+... ...++...+.. .+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~- 378 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TD- 378 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CS-
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CC-
Confidence 67899999999999988776543 33333 37899999999999653 22233433322 22
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+++++||++|.|+++++++|.+.+.
T Consensus 379 ~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 379 RHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999999998754
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=1.2e-25 Score=171.70 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=112.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC-------C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL-------S 74 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~-------~ 74 (195)
...++|+|+|..|+|||||+++|++..+. ....+++.+.......+.+. ..+.+|||||++.+..+... +
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 35789999999999999999999987652 34444555544555566554 26779999999988765433 6
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++|+|+|++..+. ...|+..+... ++|+++|+||+|+..... . +....+...++
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~--~~~~~l~~~~g- 169 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------E--ELKGLYESRYE- 169 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------T--HHHHHSSCCTT-
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------H--HHHHHHHHHcC-
Confidence 788999999999833222 22466676665 899999999999977632 1 44555555666
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++++||++|.|++++|++|.+.+.+.
T Consensus 170 ~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 170 AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 6899999999999999999999998554
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=2e-24 Score=166.92 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=104.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc---------cccCCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY---------DRLRPLSYP 76 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~---------~~~~~~~~~ 76 (195)
+|+++|.+|||||||+|+|++... ...+.+++.+.......+++..+ .+|||||.+.. ...+..+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~--~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF--KLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE--EEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE--EEEECCCccccccchHHHHHHHHHHHHHH
Confidence 799999999999999999998763 35555666666667777888765 59999997642 233455789
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH-HHHHHHcCCc
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG-QKLANKIRAV 155 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (195)
++|++++|+|++++.+..+. .+...++.. ++|+++|+||+|+.... ..+. .++. .++..
T Consensus 81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~~---------------~~~~~~~~~-~lg~~ 140 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREF---------------EREVKPELY-SLGFG 140 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHH---------------HHHTHHHHG-GGSSC
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCcccc---------------HHHHHHHHH-hcCCC
Confidence 99999999999886554432 123333333 78999999999985421 0112 2333 34533
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++++||++|.|++++++++.+.+.+.
T Consensus 141 ~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 141 EPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 689999999999999999999988643
No 133
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=1.8e-23 Score=160.17 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=105.8
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC---CCCCccc--ceeeccc-eeEE---------e----C--C----EEEE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS---FPGEYVP--TVFDNYS-APFT---------V----D--G----IPVS 55 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~-~~~~---------~----~--~----~~~~ 55 (195)
|+..+.++|+++|+.++|||||+++|++.. +..+..+ |....+. .... . + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 455678999999999999999999998542 2222222 2211111 0110 0 1 1 2367
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+.+||+|||+.|.......+..+|++|+|+|++++.......+ .+..+.. ....|+++++||+|+.....
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~-l~~~~iivv~NK~Dl~~~~~-------- 152 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEI-LGIDKIIIVQNKIDLVDEKQ-------- 152 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH-TTCCCEEEEEECTTSSCTTT--------
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHH-cCCCeEEEEEEccCCCCHHH--------
Confidence 8899999999998877788889999999999996431111111 1122222 12358999999999976531
Q ss_pred CCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 136 NLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.....+++.++...+ ..++++++||++|+|+++++++|.+.+..+..
T Consensus 153 --~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~ 201 (408)
T 1s0u_A 153 --AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR 201 (408)
T ss_dssp --TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCC
T ss_pred --HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 112234555665543 34789999999999999999999998775543
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=4.6e-23 Score=155.36 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=113.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc---------CCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL---------RPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~---------~~~ 73 (195)
...++|+++|.+|||||||+++|++.... ..+..++..........++ ..+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 35689999999999999999999987542 1222222222122222333 45779999997553211 112
Q ss_pred CCCCccEEEEEEeCCChh--cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 74 SYPQTDVFLICYSVVSPS--SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
+...+|++++|+|++++. ++.... .|+..+.....+.|+++|+||+|+..... .++...++..
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~ 307 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEEN--------------IKRLEKFVKE 307 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHH--------------HHHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHH--------------HHHHHHHHHh
Confidence 344689999999999877 566655 47777776555899999999999976532 1334455555
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+ ++++++||++|+|+++++++|.+.+...
T Consensus 308 ~~-~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 308 KG-LNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TT-CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cC-CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 55 6899999999999999999999987543
No 135
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=2.1e-25 Score=174.34 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=113.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
+++.+|+++|++++|||||+++|.+..+...+.++....+ ...+.. ++. .+.|||||||+.|..++..++..+|++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEE
Confidence 4678999999999999999999998654333333332222 222333 233 566999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH---HHHc-CCcee
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL---ANKI-RAVKY 157 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ 157 (195)
|+|+|+++....+... ++..+.. .++|+++++||+|+..... .... .+...+ +..+ +.+++
T Consensus 80 ILVVDa~dg~~~qt~e--~l~~~~~--~~vPiIVViNKiDl~~~~~----------~~v~-~~l~~~~~~~e~~~~~~~i 144 (537)
T 3izy_P 80 ILVVAADDGVMKQTVE--SIQHAKD--AHVPIVLAINKCDKAEADP----------EKVK-KELLAYDVVCEDYGGDVQA 144 (537)
T ss_dssp EEECBSSSCCCHHHHH--HHHHHHT--TTCCEEECCBSGGGTTTSC----------CSSS-SHHHHTTSCCCCSSSSEEE
T ss_pred EEEEECCCCccHHHHH--HHHHHHH--cCCcEEEEEecccccccch----------HHHH-HHHHhhhhhHHhcCCCceE
Confidence 9999999876665543 2233333 3789999999999875421 1111 111111 1111 23689
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|+++++++|...+...
T Consensus 145 v~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCchhHHHHHHHhhhcc
Confidence 9999999999999999999887544
No 136
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.91 E-value=1.1e-23 Score=166.58 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=116.3
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC--CCCCC-----cccce------eecc---ceeEEe---CCEEEEEEEEeC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE-----YVPTV------FDNY---SAPFTV---DGIPVSLGLWDT 61 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~-----~~~t~------~~~~---~~~~~~---~~~~~~l~~~D~ 61 (195)
|...+..||+++|+.++|||||+++|+.. .+... ...+. +..+ ...+.+ ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 43355679999999999999999999762 22110 00010 0011 112222 456789999999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCcc
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVK 141 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~ 141 (195)
||+.+|...+..+++.+|++|+|+|+++..+.+.... |...... ++|+++++||+|+.....
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~~---~ipiIvviNKiDl~~a~~-------------- 142 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVEQ---DLVIIPVINKIDLPSADV-------------- 142 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHHT---TCEEEEEEECTTSTTCCH--------------
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHHC---CCCEEEEEeccCccccCH--------------
Confidence 9999998888888999999999999999887777653 6554443 799999999999976421
Q ss_pred HHHHHHHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 142 REQGQKLANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 142 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.+...++...++. .+++++||++|.|+++++++|.+.+..+...
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~ 188 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGD 188 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccccc
Confidence 1223344444442 2489999999999999999999999876543
No 137
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=3.6e-24 Score=165.43 Aligned_cols=154 Identities=22% Similarity=0.314 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|+|||||+|+|++.. +.....+++.+.....+.+++..+ .+|||||...+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v--~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV--QVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEE--EECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEE--EEEECCccccchhHHHHHHHHHHhhh
Confidence 46899999999999999999999863 244555666666666777888655 59999997665432 2346
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++++|+|++++.+.... .|+..+. +.|+++|+||+|+....... ....+. ..
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~~--------------~~~~~~---~~ 357 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLIT--------------SLEYPE---NI 357 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGST--------------TCCCCT---TC
T ss_pred hhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhhH--------------HHHHhc---cC
Confidence 7899999999999988776552 3555554 37999999999997654211 000001 23
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
.+++++||++|.|+++++++|.+.+....
T Consensus 358 ~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 358 TQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 67999999999999999999999887654
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.91 E-value=6.4e-24 Score=168.23 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=113.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--CCCC-----Ccccc------eeecc---ceeEEe---CCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--SFPG-----EYVPT------VFDNY---SAPFTV---DGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~~~D~~G~~ 65 (195)
+..||+++|+.++|||||+++|+.. .+.. ....+ .+..+ ...+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4579999999999999999999862 1111 11111 00111 112222 5567899999999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+|...+..+++.+|++|+|+|+++..+.+.... |...... ++|+++++||+|+..... .+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~~---~ipiIvViNKiDl~~a~~--------------~~v~ 144 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAMEM---DLEVVPVLNKIDLPAADP--------------ERVA 144 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHHT---TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHHC---CCCEEEeeeccCcccccH--------------HHHH
Confidence 999888888999999999999999877776653 6555443 789999999999976421 2223
Q ss_pred HHHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 146 QKLANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 146 ~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
.++...++. .+++++||++|.|+++++++|.+.+..+....
T Consensus 145 ~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~ 187 (599)
T 3cb4_D 145 EEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDP 187 (599)
T ss_dssp HHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCT
T ss_pred HHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccccc
Confidence 445555542 24899999999999999999999998776443
No 139
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=8.4e-24 Score=158.16 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=92.6
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC----------ChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeC
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV----------SPSSFDNVTSKWYPELKHH--CPDAPIILVGTK 119 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK 119 (195)
..+.+++||++|++.++..|..++++++++|+|||++ +..++.+... |+..+... .+++|+++++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5688999999999999999999999999999999998 7888888875 55555432 468999999999
Q ss_pred CCcccchHhhhh------hhhcCC---CCccHHHHHHHHHH---------------cCCceeEEeccCCcccHHHHHHHH
Q psy10443 120 IDLREDRETLNL------LSEQNL---SPVKREQGQKLANK---------------IRAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 120 ~D~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
+|+......... ..+..+ .....+++..++.. ...+.+++|||+++.|++++|.++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 998643211000 000000 00124556666442 123457899999999999999999
Q ss_pred HHHHcCC
Q psy10443 176 VRAVLRP 182 (195)
Q Consensus 176 ~~~~~~~ 182 (195)
.+.+.+.
T Consensus 340 ~~~I~~~ 346 (354)
T 2xtz_A 340 DETLRRR 346 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 140
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=5.5e-24 Score=159.21 Aligned_cols=130 Identities=14% Similarity=0.223 Sum_probs=97.4
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PSSFDNVTSKWYPELKHH--CPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~ 120 (195)
.+.+++||++|++.++..|..++++++++|||+|+++ ..++.+... |+..+... ..++|+++++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence 4678899999999999999999999999999999999 456887775 55555442 4689999999999
Q ss_pred CcccchHhhhhhhhcC---CCCccHHHHHHHHHH----------cCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 121 DLREDRETLNLLSEQN---LSPVKREQGQKLANK----------IRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|+.............- ...+..+++..++.. ...+.+++|||+++.|++++|.++.+.+.+..
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 9864321100000000 012556778887762 23478999999999999999999999887543
No 141
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=1.9e-23 Score=159.94 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC--------CCCCCc---cc-----ceeecc-ceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD--------SFPGEY---VP-----TVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~--------~~~~~~---~~-----t~~~~~-~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+++.++|+++|.+++|||||+++|++. .+. .+ +. +.+..+ .....++.....+.+||+||++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~-~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcccccc-chhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 467799999999999999999999873 111 11 00 001111 1122233334567799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+|......++..+|++|+|+|+++....+.. .|+..+... ++| +++++||+|+........ ...++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~---------~~~~~ 153 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPELLD---------LVEME 153 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEECccccCcHHHHH---------HHHHH
Confidence 9988888889999999999999987654433 244555443 678 889999999975321100 11235
Q ss_pred HHHHHHHcCC----ceeEEeccCCccc------------------HHHHHHHHHHHHcCCCc
Q psy10443 145 GQKLANKIRA----VKYMECSALTQRG------------------LRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 145 ~~~~~~~~~~----~~~~~~Sa~~~~~------------------v~~~~~~l~~~~~~~~~ 184 (195)
...+...++. ++++++||++|.| +.++++.|.+.+..+..
T Consensus 154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~ 215 (405)
T 2c78_A 154 VRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR 215 (405)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC
Confidence 5666666652 6899999999988 78888888887765543
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=4.7e-23 Score=151.81 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=110.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc---------cccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE---------DYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~ 72 (195)
.+..+|+++|.+|+|||||+++|++..+. .....++.......+..++ ..+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45678999999999999999999987642 2222333332233334444 456699999987 3445567
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+++.+|++++|+|+++ -+-. ...+...+.. .+.|+++++||+|+..... ...+....+...+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~------------~~~~~l~~l~~~~ 146 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPD--DEMVLNKLRE--GKAPVILAVNKVDNVQEKA------------DLLPHLQFLASQM 146 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHH--HHHHHHHHHS--SSSCEEEEEESTTTCCCHH------------HHHHHHHHHHTTS
T ss_pred HHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHHh--cCCCEEEEEECcccCccHH------------HHHHHHHHHHHhc
Confidence 78999999999999977 2222 2112233332 3789999999999876211 1223445555555
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+...++++||+++.|++++++.+.+.+.+
T Consensus 147 ~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 147 NFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 64478999999999999999999987653
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=1.4e-23 Score=163.37 Aligned_cols=163 Identities=19% Similarity=0.143 Sum_probs=111.6
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC----C---CCCcc-cceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS----F---PGEYV-PTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLS 74 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~----~---~~~~~-~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~ 74 (195)
.++.++|+++|..++|||||+++|++.. . ..+.. ..+.+.....+.+++ +.+.+||+||++.|......+
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 4678999999999999999999999865 1 11111 111111122344455 456699999999998888888
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-- 152 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (195)
+..+|++|+|+|+++...-+... ++..+... ++|+++++||+|+....... ...++...+....
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~ip~IvviNK~Dl~~~~~~~----------~~~~~l~~~l~~~~~ 159 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIK----------RTEMIMKSILQSTHN 159 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHH----------HHHHHHHHHHHHSSS
T ss_pred HhhCCEEEEEEecCCCccHHHHH--HHHHHHHc--CCCEEEEEECCCcccchhHH----------HHHHHHHHHHhhhcc
Confidence 99999999999999843222221 22233332 68889999999997642211 1223455555544
Q ss_pred -CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 153 -RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 153 -~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+++++||++|+|+++++++|.+.+..
T Consensus 160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 160 LKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 23689999999999999999999997753
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=3.7e-24 Score=159.58 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=115.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCc----cccccCCCCCC---Ccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE----DYDRLRPLSYP---QTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~----~~~~~~~~~~~---~~d 79 (195)
+|+++|.+|||||||+++|++.... ..+..++.......+.+++ ...+.+||+||.. .+..+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6899999999999999999986532 3344344333333444543 1356799999953 33334444544 499
Q ss_pred EEEEEEeCCC---hhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVS---PSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++|+|+|+++ ++++++.. .|...+..+. .++|+++|+||+|+.... +....+...+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----------------e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAA----------------ENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------------HHHHHHHHHCC
T ss_pred EEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCH----------------HHHHHHHHHhh
Confidence 9999999998 77787776 4777777653 479999999999986542 23455555554
Q ss_pred C-ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 154 A-VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 154 ~-~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
. .+++++||+++.|+++++.+|.+.+.+...
T Consensus 302 ~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 302 DDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred cCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 2 578999999999999999999999876544
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=3.9e-23 Score=149.51 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=105.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccc--eeeccceeEEeCCEEEEEEEEeCCCCccccccCC--------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPT--VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP-------- 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~-------- 72 (195)
.+.++|+|+|.+|||||||+++|++.. +...+.++ +..........++.. +.+|||||+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHHHH
Confidence 357999999999999999999999876 44444443 333334455566654 55999999876543322
Q ss_pred ---CCCCCccEEEEEEeCCChhcHHH-HHHhhHHHHhhhCCCCcEEEEee-CCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 73 ---LSYPQTDVFLICYSVVSPSSFDN-VTSKWYPELKHHCPDAPIILVGT-KIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 73 ---~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
.+++.+|++|+|+|+++...... .. .++..+.......|.++++| |+|+..... ...... ...++...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~-~~~i~~-----~~~~~~~~ 170 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMGHTIVLFTHKEDLNGGSL-MDYMHD-----SDNKALSK 170 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHH-HHHHHHHCGGGGGGEEEEEECGGGGTTCCH-HHHHHH-----CCCHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHH-HHHHHHhCchhhccEEEEEEcccccCCccH-HHHHHh-----cchHHHHH
Confidence 26789999999999986322221 11 12222211111356666666 999974321 110000 01133444
Q ss_pred HHHHcCCc--ee--EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 148 LANKIRAV--KY--MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 148 ~~~~~~~~--~~--~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+...++.. .+ +++||+++.|++++|.+|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 55555431 12 789999999999999999998764
No 146
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.6e-24 Score=167.26 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc--------cccccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE--------DYDRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~ 75 (195)
..+|+++|.+|||||||+++|++..+. ....+++.+.......+++. .+.+|||||++ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 478999999999999999999987542 33344444443444444454 56699999985 4555566778
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+.+|++|+|+|++++.+..+. .+...++. .+.|+++|+||+|+..... . ..++. .++.-
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~------------~----~~~~~-~lg~~ 139 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA------------N----IYDFY-SLGFG 139 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC-----------------C----CCSSG-GGSSC
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchh------------h----HHHHH-HcCCC
Confidence 899999999999987665543 24444543 3789999999999865421 0 00111 23323
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++++||++|.|+.++++++.+.+.+.
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence 689999999999999999999988643
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=1e-22 Score=157.28 Aligned_cols=159 Identities=20% Similarity=0.165 Sum_probs=106.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----------- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----------- 71 (195)
..++|+++|.+|||||||+++|++... ..++.+++.+.....+.+++..+ .+||+||..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~--~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE--EESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE--EEEECCCCccccccchhhHHHHHHHH
Confidence 458999999999999999999998754 34555666666667778888755 599999975443221
Q ss_pred -CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHH
Q psy10443 72 -PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLA 149 (195)
Q Consensus 72 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (195)
..+++.+|++++|+|+++..+.++.. +...+.. .+.|+++++||+|+..... ...++.. .+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~~--~~~~~ilv~NK~Dl~~~~~------------~~~~~~~~~~~ 320 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQR--MAGLMER--RGRASVVVFNKWDLVVHRE------------KRYDEFTKLFR 320 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHH--TTCEEEEEEECGGGSTTGG------------GCHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECccCCCchh------------hHHHHHHHHHH
Confidence 12345689999999999876665432 3344443 3789999999999976431 1112221 222
Q ss_pred HH---cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 150 NK---IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 150 ~~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.. ....+++++||++|.|++++|+.+.+.+..
T Consensus 321 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 321 EKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp HHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 22 233689999999999999999999887654
No 148
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.89 E-value=1.5e-22 Score=154.54 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC-------CCCC--ccccee-----ecc-ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS-------FPGE--YVPTVF-----DNY-SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~-------~~~~--~~~t~~-----~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
+.+||+++|.+++|||||+++|++.. +... .+.+.. ... .....+......+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999998731 1100 000000 000 01122333345677999999999988
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL 148 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (195)
....+++.+|++|+|+|+++....+... +| ..+... ++| +++++||+|+........ ...++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~---------~~~~~~~~~ 148 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HL-LLARQI--GVEHVVVYVNKADAVQDSEMVE---------LVELEIREL 148 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HH-HHHHHT--TCCCEEEEEECGGGCSCHHHHH---------HHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HH-HHHHHc--CCCeEEEEEECcccCCCHHHHH---------HHHHHHHHH
Confidence 8888899999999999999865544433 23 334333 688 689999999975321100 122456667
Q ss_pred HHHcC----CceeEEeccCCccc----------HHHHHHHHHHHHcCCCc
Q psy10443 149 ANKIR----AVKYMECSALTQRG----------LRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 149 ~~~~~----~~~~~~~Sa~~~~~----------v~~~~~~l~~~~~~~~~ 184 (195)
...++ .++++++||++|.| +.++++.|.+.+..+..
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~ 198 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTR 198 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCC
Confidence 77665 26899999999874 89999999988775543
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.89 E-value=8.7e-23 Score=156.52 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=110.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC---CCCCccc--ceeeccc-eeE---------Ee----C--C----EEEEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS---FPGEYVP--TVFDNYS-APF---------TV----D--G----IPVSLG 57 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~-~~~---------~~----~--~----~~~~l~ 57 (195)
....++|+++|+.++|||||+++|++.. +..+..+ |....+. ... .. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998542 2222212 2211111 011 00 1 1 136788
Q ss_pred EEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCC
Q psy10443 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNL 137 (195)
Q Consensus 58 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~ 137 (195)
+||+||++.|.......+..+|++|+|+|+++........+++ ..+... ...|+++++||+|+.......
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~-~~~~iivviNK~Dl~~~~~~~-------- 156 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKAL-------- 156 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHH--------
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc-CCCcEEEEEECccCCCHHHHH--------
Confidence 9999999998877777788899999999999643111111112 222222 135899999999997653211
Q ss_pred CCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 138 SPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
...+++..+.... ..++++++||++|.|+++++++|.+.+..+..
T Consensus 157 --~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~ 203 (410)
T 1kk1_A 157 --ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKR 203 (410)
T ss_dssp --HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred --HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 1123344444432 33789999999999999999999998776543
No 150
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=2.3e-23 Score=153.77 Aligned_cols=131 Identities=14% Similarity=0.175 Sum_probs=95.9
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC----------ChhcHHHHHHhhHHHHhh-h-CCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV----------SPSSFDNVTSKWYPELKH-H-CPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~-~~~~p~vvv~nK~ 120 (195)
.+.+++||++||+.++..|..|+++++++|+|+|++ +..++.+... |+..+.. . ..++|+++++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEECc
Confidence 367889999999999999999999999999999665 6677777765 4444433 2 4689999999999
Q ss_pred CcccchHhhhhhh----hcCCCCccHHHHHHHHH---------HcCCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 121 DLREDRETLNLLS----EQNLSPVKREQGQKLAN---------KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 121 D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|+........... +..-...+.+++..+.. ....+.+++|||+++.|++.+|..+.+.+.+..-
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 9875432111111 11112356677777743 1123678999999999999999999999886543
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=5.5e-22 Score=155.61 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=81.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC-----------------CCc------ccceeeccceeEEeCCEEEEEEEEeC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP-----------------GEY------VPTVFDNYSAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~-----------------~~~------~~t~~~~~~~~~~~~~~~~~l~~~D~ 61 (195)
+..+|+++|.+|+|||||+++|+...-. ..+ ...+.......+..++ +.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 4579999999999999999999621100 000 0001111112233444 56779999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
||+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 999999999999999999999999999877766654 24 333333 7899999999999654
No 152
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.88 E-value=3e-22 Score=148.33 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=94.8
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC----------ChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV----------SPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D 121 (195)
.+.+++||++||+.++..|..|+++++++|+|+|++ +..++.+....|...+... ..++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 467889999999999999999999999999999998 6788888775344444332 46899999999999
Q ss_pred cccchHhhhhhhhcCC---CCccHHHHHHHHH-Hc-------------------------CCceeEEeccCCcccHHHHH
Q psy10443 122 LREDRETLNLLSEQNL---SPVKREQGQKLAN-KI-------------------------RAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 122 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~-------------------------~~~~~~~~Sa~~~~~v~~~~ 172 (195)
+.............-+ .....+++..|+. .+ ..+.+++|||+++.|++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 9764332111111110 1123455555443 23 23678999999999999999
Q ss_pred HHHHHHHcC
Q psy10443 173 DEAVRAVLR 181 (195)
Q Consensus 173 ~~l~~~~~~ 181 (195)
..+.+.+.+
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 153
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=1.6e-22 Score=151.80 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=87.6
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hhcHHHHHHhhHHHHhh--hCCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PSSFDNVTSKWYPELKH--HCPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~~p~vvv~nK~ 120 (195)
.+.+.+||++|++.++..|..++++++++|||+|+++ ..++.+... |+..+.. ...++|+++++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEECh
Confidence 3678899999999999999999999999999999999 678888875 5444443 24689999999999
Q ss_pred CcccchHhhhhhhhc----CCCCccHHHHHHHHH-------H---cCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 121 DLREDRETLNLLSEQ----NLSPVKREQGQKLAN-------K---IRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 121 D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+............. ....++.+++..++. . ...+.+++|||+++.|++++|.++.+.+.+.
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 986432110000000 001145566776652 1 1236789999999999999999999988654
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=6.8e-22 Score=141.31 Aligned_cols=166 Identities=17% Similarity=0.087 Sum_probs=104.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc---ceeeccceeEEeCCEEEEEEEEeCCCCc-----------cccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP---TVFDNYSAPFTVDGIPVSLGLWDTAGQE-----------DYDR 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~~~D~~G~~-----------~~~~ 69 (195)
...++|+++|.+|||||||+++|++..+.....+ ++.........+++.. +.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999776444333 2233333455566654 5599999943 3444
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
....+++++|++|+|+|+++...... .|+..+... ....|+++|+||+|+.......... ....+..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i------~~~~~~l~ 175 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYL------REAPEDIQ 175 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHH------HhchHHHH
Confidence 45556788999999999976544221 122222211 1246999999999987653221110 01123567
Q ss_pred HHHHHcCCceeEEeccC-----CcccHHHHHHHHHHHHcC
Q psy10443 147 KLANKIRAVKYMECSAL-----TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 147 ~~~~~~~~~~~~~~Sa~-----~~~~v~~~~~~l~~~~~~ 181 (195)
.+...++ ..++.++.. +..++.+++..+.+.+.+
T Consensus 176 ~l~~~~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 176 DLMDIFG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 7778877 456666655 347899999998887754
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=4.3e-22 Score=153.55 Aligned_cols=159 Identities=15% Similarity=0.124 Sum_probs=101.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc------------------------------ccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY------------------------------VPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~ 51 (195)
+..++|+++|.+++|||||+++|+... +.... ...+.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 457999999999999999999995531 11100 0111111112223333
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcH---H---HHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSF---D---NVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
..+.+||+||+++|......+++.+|++|+|+|+++.... . .... .+..+.. .++| +++++||+|+..
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHHH--cCCCeEEEEeecCCCcc
Confidence 4677999999999998888899999999999999986421 0 1111 2222222 2567 999999999864
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHHHHcC-----CceeEEeccCCcccHHHHHH
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLANKIR-----AVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~ 173 (195)
....... .....++...+...++ .++++++||++|.|+.++++
T Consensus 170 ~~~~~~~------~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNER------YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHH------HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 3211100 0012234455555544 35799999999999998654
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.88 E-value=2.9e-23 Score=160.09 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC--CCCCCc------------------------------ccceeeccceeEE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGEY------------------------------VPTVFDNYSAPFT 48 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~ 48 (195)
|..++.+||+++|.+++|||||+++|+.. .+.... ...+.+.... .
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~ 78 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--R 78 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--E
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--E
Confidence 66778899999999999999999999864 332111 0011111111 2
Q ss_pred eCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-----CCCC-cEEEEeeCCCc
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-----CPDA-PIILVGTKIDL 122 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~-p~vvv~nK~D~ 122 (195)
++...+.+.+||+||+++|...+..+++.+|++|+|+|+++ .+++.... |....... ..++ |+++++||+|+
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 22334567799999999998888889999999999999998 55554331 22111111 1144 68999999999
Q ss_pred ccchHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHHH
Q psy10443 123 REDRETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~ 172 (195)
......... .....+++..+...++ .++++++||++|+|+.+++
T Consensus 157 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 157 TEPPYDEKR------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp SSSTTCHHH------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred CCccccHHH------HHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 763100000 0022345667777665 2689999999999997543
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=6.1e-23 Score=149.51 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=91.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCC-CCCc-------ccceeec-cceeEEeCCEEEEEEEEeCCCCccccc----
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSF-PGEY-------VPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDR---- 69 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~-------~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~---- 69 (195)
+...++|+++|.+|+|||||+|+|++... ...+ .+|.... ....+..++..+.+.+|||||......
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45579999999999999999999877543 3333 3333222 233344466667899999999743211
Q ss_pred ---cC--------------------CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 70 ---LR--------------------PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 70 ---~~--------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+. ...-..+|+++++++.+.... ......++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-KPLDIEFMKRLHE---KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-CHHHHHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-CHHHHHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence 10 111124789999998765321 1222235555554 79999999999987553
Q ss_pred HhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+... ..+.+.+.....+ ++++.+|+++++|+++++++|.+.+.
T Consensus 161 e~~~----------~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQ----------FKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHH----------HHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCS
T ss_pred HHHH----------HHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3111 1123444455555 68999999999999999999988764
No 158
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=9.7e-22 Score=155.95 Aligned_cols=172 Identities=16% Similarity=0.191 Sum_probs=106.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcc----cceeeccce-------------eEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV----PTVFDNYSA-------------PFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~----~t~~~~~~~-------------~~~~~~~~~~l~~~D~~G~~ 65 (195)
++++.+|+++|++++|||||+++|++..+..... ++.+..+.. ...++.....++||||||++
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4578899999999999999999998754322111 111111100 00000111247799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCC---hhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh---hhhhhcCCCC
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVS---PSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL---NLLSEQNLSP 139 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~---~~~~~~~~~~ 139 (195)
.|..++..+++.+|++|+|+|+++ +.++..+. .+.. .++|+++++||+|+....... ...+......
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 999999999999999999999998 44443322 2222 378999999999996421100 0000000000
Q ss_pred --cc---HH---HHHHHHHH--------------cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 140 --VK---RE---QGQKLANK--------------IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 140 --~~---~~---~~~~~~~~--------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+. .+ +....... ...++++++||++|.|+++++++|...+..
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 00 00 01111111 122589999999999999999999987653
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.5e-22 Score=140.03 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=83.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCC---
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQ--- 77 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~--- 77 (195)
.+.++|+++|.+|||||||+++|.+..+.. .+.++... +...+.+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 467899999999999999999999876533 11222211 1134566799999999998877777766
Q ss_pred -ccEEEEEEeCC-ChhcHHHHHHhhHHHHhh-----hCCCCcEEEEeeCCCcccc
Q psy10443 78 -TDVFLICYSVV-SPSSFDNVTSKWYPELKH-----HCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 78 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~p~vvv~nK~D~~~~ 125 (195)
+|++++|+|++ +++++..... |+..+.. ..++.|+++|+||+|+...
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 8888888775 4444332 2358999999999999765
No 160
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=2.6e-21 Score=138.83 Aligned_cols=168 Identities=13% Similarity=0.015 Sum_probs=103.6
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-cc--ceeeccceeEEeCCEEEEEEEEeCCCCc--------cccccC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-VP--TVFDNYSAPFTVDGIPVSLGLWDTAGQE--------DYDRLR 71 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~ 71 (195)
.+++++|+++|.+|||||||++++++....... .+ ++..........++.. +.+|||||.. .+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH--VEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEE--EEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcE--EEEEECCCCCCCCCCcHHHHHHHH
Confidence 357899999999999999999999987653322 22 3333334455566654 5599999963 222222
Q ss_pred CCC----CCCccEEEEEEeCCChhcHHHHHHhhHHHHhh----hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH
Q psy10443 72 PLS----YPQTDVFLICYSVVSPSSFDNVTSKWYPELKH----HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE 143 (195)
Q Consensus 72 ~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (195)
..+ .+.+|++|+|+|+++...... .++..+.. ...+.|+++++||+|+......... . ....+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~---~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l-~-----~~~~~ 166 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQ---QAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYV-S-----NTENR 166 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHH---HHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHH-H-----HCCCH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHH---HHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHH-h-----hcccH
Confidence 222 389999999999985322111 12233322 2236899999999999654221110 0 01113
Q ss_pred HHHHHHHHcCCceeEEeccCC-----cccHHHHHHHHHHHHcCC
Q psy10443 144 QGQKLANKIRAVKYMECSALT-----QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~-----~~~v~~~~~~l~~~~~~~ 182 (195)
..+.+...++ ..++.+++.. +.|++++++.+.+.+.+.
T Consensus 167 ~l~~l~~~~g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 167 ALRELVAECG-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHHHHHHHTT-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 4667777777 3555555443 689999999998887653
No 161
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.87 E-value=8.8e-22 Score=163.33 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=113.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-------CCC--Ccc-----cceeecc-ceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-------FPG--EYV-----PTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-------~~~--~~~-----~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
++.++|+++|++++|||||+++|++.. +.. ..+ .+.+.++ .....++.....+.+||+||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 567999999999999999999998631 000 000 0111111 0112233344667799999999998
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
.....++..+|++|+|+|+++....+... ++..+... ++| +++++||+|+........ ...+++..
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~le---------~i~eEi~e 440 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELLE---------LVEMEVRE 440 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhHH---------HHHHHHHH
Confidence 88888899999999999999865433322 33444433 688 789999999975322111 12245666
Q ss_pred HHHHcC----CceeEEeccCCc--------ccHHHHHHHHHHHHcCCCc
Q psy10443 148 LANKIR----AVKYMECSALTQ--------RGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 148 ~~~~~~----~~~~~~~Sa~~~--------~~v~~~~~~l~~~~~~~~~ 184 (195)
+...++ .++++++||++| .|+.++++.|.+.+..+..
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r 489 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER 489 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc
Confidence 676665 268999999999 6799999999887765443
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=3.7e-23 Score=160.53 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=106.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc-ceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP-TVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+|+++|++++|||||+++|.+..+.....+ .+.......+..++. .+.|||||||+.|..++..++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4778999999999999999999987544322221 111111222333444 4569999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc-CCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-RAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S 161 (195)
+|+|+++....+... .| ..+.. .++|+++++||+|+...+.. ........... +...+ +.++++++|
T Consensus 80 LVVda~~g~~~qT~e-~l-~~~~~--~~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~-------~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 80 LVVAADDGVMPQTIE-AI-QHAKA--AQVPVVVAVNKIDKPEADPD-RVKNELSQYGI-------LPEEWGGESQFVHVS 147 (501)
T ss_dssp EEEETTTBSCTTTHH-HH-HHHHH--TTCCEEEEEECSSSSTTCCC-CTTCCCCCCCC-------CTTCCSSSCEEEECC
T ss_pred EEeecccCccHHHHH-HH-HHHHh--cCceEEEEEEeccccccCHH-HHHHHHHHhhh-------hHHHhCCCccEEEEe
Confidence 999998843322222 12 22222 37899999999999653211 00000000000 01111 236899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
|++|.|+++++++|...
T Consensus 148 AktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 148 AKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTTCTTCTTHHHHTTTT
T ss_pred eeeccCcchhhhhhhhh
Confidence 99999999999998764
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=2.2e-21 Score=145.96 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=107.6
Q ss_pred ceE-EEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc---------ccccCCCC
Q psy10443 6 PIK-CVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED---------YDRLRPLS 74 (195)
Q Consensus 6 ~~~-i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~---------~~~~~~~~ 74 (195)
.++ |+++|.+|+|||||+++|++..+. ..+..++.+.....+.+++.. +.+||++|... +...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 455 999999999999999999987642 233344444555667777754 56999999622 22222 24
Q ss_pred CCCccEEEEEEeCCChh--cHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 75 YPQTDVFLICYSVVSPS--SFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
+..+|++++|+|++++. ...... .|...+... ..+.|+++|+||+|+...... .....+..++..
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~l~~~ 322 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDLY-----------KKLDLVEKLSKE 322 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-----------HHHHHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchHH-----------HHHHHHHHHHHH
Confidence 67899999999999876 333333 355555543 357899999999998754210 001223334444
Q ss_pred c-C-CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 152 I-R-AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 152 ~-~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+ . ..+++++||+++.|++++++.|.+.+..+.
T Consensus 323 l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 323 LYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp HCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred hcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 4 2 246899999999999999999998776544
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1.6e-21 Score=150.50 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=101.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC----------cccceeecc-----------------c---eeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE----------YVPTVFDNY-----------------S---APFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~----------~~~t~~~~~-----------------~---~~~~~~~ 51 (195)
+..+||+++|.+++|||||+++|++.. +..+ ..++++..+ + ....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345899999999999999999998643 1111 112211111 0 0011222
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCC-cEEEEeeCCCcccchHhhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGTKIDLREDRETLN 130 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~~~~ 130 (195)
....+.+||+||+++|...+..++..+|++|+|+|+++....+... ++..+... ++ |+++++||+|+........
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~--~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 3356779999999999888878889999999999999865443332 33333332 44 6999999999976321000
Q ss_pred hhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHH
Q psy10443 131 LLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 171 (195)
....++...+...++ .++++++||++|.|++++
T Consensus 178 --------~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 --------ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp --------HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred --------HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 012345566666665 268999999999999874
No 165
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=2.7e-21 Score=150.95 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=96.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc------------------------------ccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY------------------------------VPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~ 51 (195)
+..+||+++|.+++|||||+++|+... +...+ ...+.+. ....++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI--CTSHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC--CEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe--eeEEEec
Confidence 456999999999999999999997641 11000 0011111 1122333
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHH-----HHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN-----VTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
..+.+.|||+||+++|......+++.+|++|+|+|++++.+... .....+..... ....|+++++||+|+....
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTC
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccch
Confidence 44677899999999999888889999999999999998754321 11112222222 2235799999999997632
Q ss_pred HhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 127 ETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
.... ....++...+...++ .++++++||++|.|+++
T Consensus 188 ~~~~--------~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHH--------HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHH--------HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1100 011223344444433 36899999999999874
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=1.1e-22 Score=157.79 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCC--------CccccccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG--------QEDYDRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G--------~~~~~~~~~~ 73 (195)
|+..+|+++|.+|||||||+++|++..+. ..+.+++.+.........+ ..+.+||||| ++.+......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 45679999999999999999999987542 2333333333333333333 4666999999 5666666777
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++.+|++|+|+|..+.....+. .+...++. .+.|+++|+||+|+..... ...++. ..+
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~--~l~~~l~~--~~~pvilV~NK~D~~~~~~----------------~~~e~~-~lg 157 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA----------------NIYDFY-SLG 157 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHH--HHHHHHTT--CCSCEEEEEECC-------------------------CCSG-GGS
T ss_pred hHhhCCEEEEEEeCCCCCChHHH--HHHHHHHH--cCCCEEEEEECccchhhhh----------------hHHHHH-HcC
Confidence 88899999999998875443332 24445544 4799999999999864321 000111 122
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.-..+++||++|.|+.++++.+.+.+...
T Consensus 158 ~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 158 FGEPYPISGTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp SSSEEECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred CCceEEeecccccchHHHHHHHHhhcccc
Confidence 23467999999999999999999877543
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=4.9e-21 Score=148.41 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=101.4
Q ss_pred CC-CCcceEEEEEcCCCCchHHHHHHhhcC--CCCCC------------------c------------ccceeeccceeE
Q psy10443 1 MS-SGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE------------------Y------------VPTVFDNYSAPF 47 (195)
Q Consensus 1 m~-~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~------------------~------------~~t~~~~~~~~~ 47 (195)
|. ++..++|+++|.+++|||||+++|++. .+... + ...+.+....
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~-- 78 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW-- 78 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--
Confidence 65 467899999999999999999999863 22110 0 0001111111
Q ss_pred EeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc---H----HHHHHhhHHHHhhhCCCCc-EEEEeeC
Q psy10443 48 TVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS---F----DNVTSKWYPELKHHCPDAP-IILVGTK 119 (195)
Q Consensus 48 ~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-~vvv~nK 119 (195)
.++...+.+.+||+|||++|......++..+|++|+|+|+++... + +... ++..+.. .++| +++++||
T Consensus 79 ~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~--~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 79 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE--HALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH--HHHHHHH--TTCCEEEEEEEC
T ss_pred EEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH--HHHHHHH--cCCCeEEEEEEc
Confidence 222334567799999999998888889999999999999987532 2 2221 2222222 2565 8999999
Q ss_pred CCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC----ceeEEeccCCcccHHH
Q psy10443 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA----VKYMECSALTQRGLRQ 170 (195)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~ 170 (195)
+|+...+.... ....++...+...++. ++++++||++|.|+.+
T Consensus 155 ~Dl~~~~~~~~--------~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDESRF--------QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCHHHH--------HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCHHHH--------HHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99974211000 0123455666666653 6899999999999864
No 168
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=8.1e-23 Score=153.94 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=85.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC-CCCCcc--------cceeec-cceeEEeCCEEEEEEEEeCCCC-------ccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYV--------PTVFDN-YSAPFTVDGIPVSLGLWDTAGQ-------EDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~--------~t~~~~-~~~~~~~~~~~~~l~~~D~~G~-------~~~ 67 (195)
..++|+|+|++|+|||||+++|++.. +...+. +|.... ....+..++..+.+.+||+||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987643 333222 232222 1223344567778999999998 555
Q ss_pred cccCC-------CCCC-----------CccEEEEEEeCCC-hhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 68 DRLRP-------LSYP-----------QTDVFLICYSVVS-PSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 68 ~~~~~-------~~~~-----------~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
..++. .+++ .+++.+++|++++ ..++......|+..+. .++|+++|+||+|+......
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHH
Confidence 55543 3332 2222234444443 3444444433544443 57999999999999765431
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 129 LNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
. ...+++..++..++ ++++++||+++.| ++.|..+.+.+.+.
T Consensus 193 ~----------~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 193 E----------RLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp H----------HHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHT
T ss_pred H----------HHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 1 01145666666666 7899999999998 88888777776543
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=7.1e-22 Score=153.45 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=89.4
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc--CCCCC-------------------------------CcccceeeccceeEEe
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT--DSFPG-------------------------------EYVPTVFDNYSAPFTV 49 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~ 49 (195)
.++.++|+++|+.++|||||+++|+. +.+.. ....|.... ...+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEec
Confidence 35678999999999999999999974 22210 000111111 112333
Q ss_pred CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh---cHH---HHHHhhHHHHhhhCCCCc-EEEEeeCCCc
Q psy10443 50 DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS---SFD---NVTSKWYPELKHHCPDAP-IILVGTKIDL 122 (195)
Q Consensus 50 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~ 122 (195)
++ ..+.+||+|||++|...+..++..+|++|+|+|+++.. +++ ....++ ..... .++| +++++||+|+
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART--QGINHLVVVINKMDE 193 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH--TTCSSEEEEEECTTS
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH--cCCCEEEEEEECccC
Confidence 44 45679999999999988888999999999999999863 221 111112 22222 3677 9999999999
Q ss_pred ccchHhhhhhhhcCCCCccHHHHHHHHHHc-C-----CceeEEeccCCcccHHHHH
Q psy10443 123 REDRETLNLLSEQNLSPVKREQGQKLANKI-R-----AVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~v~~~~ 172 (195)
......... .....++...+...+ + .++++++||++|.|+.+++
T Consensus 194 ~~~~~~~~~------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 194 PSVQWSEER------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSCHHH------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCccccHHH------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 642100000 001223455566554 2 3679999999999998754
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.7e-21 Score=152.81 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=99.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc--------------------------------ccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY--------------------------------VPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~--------------------------------~~t~~~~~~~~~~~~~ 51 (195)
+..+||+++|.+|+|||||+++|++....-.. ..++.+.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 46799999999999999999999875321100 011111111222333
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc---H---HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS---F---DNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+.+.||||||+++|......+++.+|++|+|+|++++.. + .... ..+...... ...|+++|+||+|+...
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASSL-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHHc-CCCeEEEEEecccccch
Confidence 3567799999999999888999999999999999987421 0 0111 111222221 22459999999999763
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHH
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 171 (195)
..... ....++...+...++ .++++++||++|.|+.++
T Consensus 321 ~~~~~--------~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHH--------HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHH--------HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 21100 011233444555444 268999999999999865
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=3.5e-21 Score=145.23 Aligned_cols=150 Identities=7% Similarity=-0.016 Sum_probs=102.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
+|+++|.+++|||||+++|+.. ..|.... ...+..+ .+.+.+||+||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~-~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSDIT-MYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESSSE-EEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEEee-EEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 9999999999999999999821 1121111 1222233 3457799999999997777777889999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhCCCCcE-EEEee-CCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC--CceeEE--ec
Q psy10443 88 VSPSSFDNVTSKWYPELKHHCPDAPI-ILVGT-KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR--AVKYME--CS 161 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~S 161 (195)
++.. .....+ ++..+... ++|. ++++| |+|+ ....... ..++++++...++ .+++++ +|
T Consensus 93 ~~g~-~~qt~e-~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~----------~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 93 PQGL-DAHTGE-CIIALDLL--GFKHGIIALTRSDST-HMHAIDE----------LKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp TTCC-CHHHHH-HHHHHHHT--TCCEEEEEECCGGGS-CHHHHHH----------HHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CCCC-cHHHHH-HHHHHHHc--CCCeEEEEEEeccCC-CHHHHHH----------HHHHHHHHHHhcCCCceEEEecccc
Confidence 5433 222332 44444443 6777 88999 9999 4321110 1134444444432 368999 99
Q ss_pred cCC---cccHHHHHHHHHHHHcCC
Q psy10443 162 ALT---QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~---~~~v~~~~~~l~~~~~~~ 182 (195)
|++ +.|++++++.|.+.+...
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcccc
Confidence 999 999999999999887543
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=132.36 Aligned_cols=161 Identities=13% Similarity=0.060 Sum_probs=99.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccc----------cccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDY----------DRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~----------~~~~~ 72 (195)
.+..+|+++|++|||||||++++++..+.....++.+.... ..+.+++ .+.+||+||.... .....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 46789999999999999999999987643333344333221 2222333 3559999997431 11112
Q ss_pred CCC---CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSY---PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.++ ..++++++++|++++.+..... ....+.. .++|+++++||+|+...... ......+..++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~--~~~~~~~v~nK~D~~s~~~~----------~~~~~~~~~~~ 166 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVD--SNIAVLVLLTKADKLASGAR----------KAQLNMVREAV 166 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCHHHH----------HHHHHHHHHHH
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHHH--cCCCeEEEEecccCCCchhH----------HHHHHHHHHHH
Confidence 222 5789999999999876553221 2222222 26899999999998764321 01123444555
Q ss_pred HHcC-CceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 150 NKIR-AVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 150 ~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+ .+.++++||+++.|++++++.|.+.+.+
T Consensus 167 ~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 5443 3567899999999999999999987754
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=9.5e-22 Score=144.91 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC------cccc-----------------------eeeccc-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE------YVPT-----------------------VFDNYS----------- 44 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~------~~~t-----------------------~~~~~~----------- 44 (195)
...+|+|+|.+|||||||+++|++..+... ..|+ +.....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999876311 1122 100000
Q ss_pred ----------eeEEeC-CEEEEEEEEeCCCCcc-------------ccccCCCCCCCccEEE-EEEeCCChhcHHHHHHh
Q psy10443 45 ----------APFTVD-GIPVSLGLWDTAGQED-------------YDRLRPLSYPQTDVFL-ICYSVVSPSSFDNVTSK 99 (195)
Q Consensus 45 ----------~~~~~~-~~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 99 (195)
..+.+. .....+.+|||||... +..+...+++.++.++ +|+|+++..+..+.. .
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-H
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-H
Confidence 000000 0024677999999642 3344556777888776 799998754433332 2
Q ss_pred hHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH--HHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 100 WYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL--ANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 100 ~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+...+.. .+.|+++|+||+|+..... ...+..... ....+..+++++||++|.|++++++++.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTC------------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCc------------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 4444443 3789999999999976432 111111100 00112246889999999999999999877
Q ss_pred H
Q psy10443 178 A 178 (195)
Q Consensus 178 ~ 178 (195)
.
T Consensus 250 ~ 250 (299)
T 2aka_B 250 E 250 (299)
T ss_dssp H
T ss_pred H
Confidence 4
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.9e-21 Score=154.60 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=89.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC------------------------------cccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE------------------------------YVPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (195)
+..++|+++|.+++|||||+++|+... +... ...++.+.....+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 456899999999999999999996421 1000 001111111111222
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh---cH--H-HHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS---SF--D-NVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
....+.||||||++.|......++..+|++|+|+|++++. ++ . .... .+..+... ++| +++++||+|+..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~l--gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRAL--GISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHHS--SCCCEEEEEECGGGGT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHHc--CCCeEEEEEecccccc
Confidence 2356779999999999999999999999999999998642 11 1 1111 22222222 565 999999999975
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHH-HHcCC----ceeEEeccCCcccHH--------------HHHHHHHHHHc
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLA-NKIRA----VKYMECSALTQRGLR--------------QVFDEAVRAVL 180 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~v~--------------~~~~~l~~~~~ 180 (195)
...... ....++...+. ...+. ++++++||++|.|+. .+++.|.+.+.
T Consensus 330 ~~~~~~--------~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 330 WSEDRF--------QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TCHHHH--------HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccHHHH--------HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 221000 01122334444 33332 479999999999998 67777766544
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.83 E-value=1.3e-19 Score=142.31 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=78.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCC--------Ccccce----------eecc---ceeEEeCCEEEEEEEEeC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPG--------EYVPTV----------FDNY---SAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~--------~~~~t~----------~~~~---~~~~~~~~~~~~l~~~D~ 61 (195)
+..+|+++|.+|+|||||+++|+... +.. ....+. +... ...+..++ +.+++|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 56899999999999999999998631 100 000011 0000 11223333 56779999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
||+..|......+++.+|++|+|+|+++....+.. .+...+.. .++|+++++||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~--~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRL--RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTT--TTCCEEEEEECTTSCCSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHH--cCCCEEEEEcCcCCcccc
Confidence 99999988888889999999999999986543332 23333333 378999999999997643
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.82 E-value=6.7e-20 Score=147.74 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=80.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce----------------eecc-ceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV----------------FDNY-SAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
.+..+|+++|+.|+|||||+++|++.........+. ...+ .....+....+.+++||+||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456799999999999999999998532211111100 0011 11222222346788999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
|......+++.+|++++|+|+++....+... ++..+... ++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~--~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHH--HHHHHHHc--cCCEEEEecCCchh
Confidence 9888888899999999999998765544432 44444443 79999999999987
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=6.2e-20 Score=132.80 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=84.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCC-----
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYP----- 76 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~----- 76 (195)
+++++|+++|.+|+|||||+++|++..+ ...+.+++.......+..++. .+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 5789999999999999999999998764 344445544444455566665 5669999999887655444433
Q ss_pred ----CccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CC--CcEEEEeeCCCcccc
Q psy10443 77 ----QTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PD--APIILVGTKIDLRED 125 (195)
Q Consensus 77 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~vvv~nK~D~~~~ 125 (195)
++|++++|+++++.. +......|+..+.... .+ .|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987654 3333224666665532 22 499999999998643
No 178
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=3.6e-20 Score=136.45 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=107.3
Q ss_pred HHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh-cHHHHHH
Q psy10443 21 CMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTS 98 (195)
Q Consensus 21 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 98 (195)
+|+.+++.+.|. ..+.||.++.+......++ .+.+||+ +++++.+++.+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~- 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID- 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-
Confidence 688889988888 8889998876654332333 5779999 9999999999999999999999999998 666655
Q ss_pred hhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC-ceeEEeccCCcccHHHHHHHHHH
Q psy10443 99 KWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA-VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 99 ~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.|+..+.. .++|+++|+||+|+..... + ++...++..++. .+++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~------------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD------------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH------------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh------------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 58877665 4899999999999976421 1 345566666553 57999999999999999988754
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=6.8e-19 Score=142.37 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCC------C------------CcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFP------G------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
.+..+|+++|.+|+|||||+++|+.. .+. . ....|... ....+..++ +.+++|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~-~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA-AVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C-CEEEEEETT--EEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc-ceEEEEECC--eEEEEEECcC
Confidence 45689999999999999999999841 110 0 01111111 112233333 5677999999
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+..|...+..+++.+|++|+|+|+++....+... .|... ... ++|+++++||+|+....
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~-~~~--~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQA-EKY--KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHH-HHT--TCCEEEEEECTTSTTCC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHH-HHc--CCCEEEEEECCCcccCC
Confidence 9999888888999999999999999987776654 35443 332 79999999999997643
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.80 E-value=1.3e-20 Score=138.69 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=87.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC-CCCCCc--------ccceeec-cceeEEeCCEEEEEEEEeCCCC-------ccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD-SFPGEY--------VPTVFDN-YSAPFTVDGIPVSLGLWDTAGQ-------EDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~-~~~~~~--------~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~-------~~~ 67 (195)
-.++|+++|++|+|||||+++|++. .++..+ .++.... .......++....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998875 443332 1121111 1112223455678899999997 444
Q ss_pred cccCC-------CCCC-------------CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 68 DRLRP-------LSYP-------------QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 68 ~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
..+.. .+++ .+++++++.+.+.. ++..... ..++....++|+++|+||+|+....+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 43322 2211 23445555554321 2333221 22333334689999999999976432
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
. ....+++.+++..++ ++++++||+++ |++++|..+.+.+.+..+
T Consensus 173 ~----------~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 173 R----------ERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp H----------HHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCS
T ss_pred H----------HHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 1 123456788888887 78999999999 999999999998865443
No 181
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.80 E-value=3.4e-19 Score=134.82 Aligned_cols=148 Identities=17% Similarity=0.236 Sum_probs=103.4
Q ss_pred CCCcccceeeccce----------eEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hh
Q psy10443 32 PGEYVPTVFDNYSA----------PFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PS 91 (195)
Q Consensus 32 ~~~~~~t~~~~~~~----------~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~ 91 (195)
..+|.||..+.+.. .+.+++ +.+++||++|++.++..|..++++++++|||||+++ ..
T Consensus 187 ~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n 264 (402)
T 1azs_C 187 QDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN 264 (402)
T ss_dssp CTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB
T ss_pred ccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccc
Confidence 45677776443321 233443 678899999999999999999999999999999999 88
Q ss_pred cHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhh--hh----hcC------------CCCccHHHHHHHH--
Q psy10443 92 SFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNL--LS----EQN------------LSPVKREQGQKLA-- 149 (195)
Q Consensus 92 s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~--~~----~~~------------~~~~~~~~~~~~~-- 149 (195)
++.++.. |+..+... .+++|++|++||+|+......... .. +.. -.....+++..|+
T Consensus 265 s~~e~~~-~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~ 343 (402)
T 1azs_C 265 RLQEALN-LFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 343 (402)
T ss_dssp HHHHHHH-HHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHH
Confidence 9998875 66666543 478999999999998654321000 00 000 0000134555553
Q ss_pred ---HHc-------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 150 ---NKI-------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 150 ---~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
... ..+.+++|||+++.|++++|.++.+.+.+.
T Consensus 344 kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 344 EFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 221 236678999999999999999999887644
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=3.2e-19 Score=144.38 Aligned_cols=172 Identities=15% Similarity=0.173 Sum_probs=105.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceee--------ccceeEEe--------------------CC----
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFD--------NYSAPFTV--------------------DG---- 51 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~--------~~~~~~~~--------------------~~---- 51 (195)
..++|+|+|.+|+|||||+|+|++..+ +....|++.. ....+..+ ++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 578999999999999999999998754 2222333310 00001100 00
Q ss_pred ----------------------EE--EEEEEEeCCCCcc---ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHH
Q psy10443 52 ----------------------IP--VSLGLWDTAGQED---YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL 104 (195)
Q Consensus 52 ----------------------~~--~~l~~~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (195)
.. ..+.+|||||... .......+++.+|++|+|+|++++.+..+.. .|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHHH
Confidence 00 2477999999554 2344556788999999999999887776654 355444
Q ss_pred hhhCCCCcEEEEeeCCCcccchHhhh-hhhhcCCCCccHHHHHH-----HHHHc-------CCceeEEeccC--------
Q psy10443 105 KHHCPDAPIILVGTKIDLREDRETLN-LLSEQNLSPVKREQGQK-----LANKI-------RAVKYMECSAL-------- 163 (195)
Q Consensus 105 ~~~~~~~p~vvv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~-------~~~~~~~~Sa~-------- 163 (195)
... +.|+++|+||+|+........ ..... . ...+.... +.... ...+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l--~-~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLIDPDDVEEL--Q-ASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCSSTTCHHHH--H-HHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred Hhh--CCCEEEEEECcccccccccChhhHHHH--H-HHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 433 678999999999875420000 00000 0 00001111 11111 12468999999
Q ss_pred ------CcccHHHHHHHHHHHHcCC
Q psy10443 164 ------TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ------~~~~v~~~~~~l~~~~~~~ 182 (195)
++.|+++++..|.+.+...
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred CchhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877543
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.79 E-value=2.1e-18 Score=139.66 Aligned_cols=118 Identities=17% Similarity=0.081 Sum_probs=82.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCCC-----------c-------ccceeeccceeEEeC-----CEEEEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE-----------Y-------VPTVFDNYSAPFTVD-----GIPVSLGL 58 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~-----------~-------~~t~~~~~~~~~~~~-----~~~~~l~~ 58 (195)
.+..+|+|+|..|+|||||+++|+.. .+... + ..|.... ...+.++ +..+.+++
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence 45689999999999999999999752 11110 0 0011000 1122222 23478889
Q ss_pred EeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
|||||+.+|...+..+++.+|++|+|+|+++....+... .|.. ... .++|+++++||+|+...+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQ-ANK--YKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHH-HHH--cCCCEEEEEeCCCccccc
Confidence 999999999888888999999999999999876655443 2433 322 279999999999987543
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=9.3e-19 Score=127.18 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=81.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC--------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL-------- 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~-------- 73 (195)
.+.++|+++|.+|+|||||+++|++..+. ..+.+++..........++ +.+.+|||||+..+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987652 3333333332233333444 45679999998776533221
Q ss_pred -CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CC--CcEEEEeeCCCcccch
Q psy10443 74 -SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PD--APIILVGTKIDLREDR 126 (195)
Q Consensus 74 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~vvv~nK~D~~~~~ 126 (195)
..+.+|++++|+|++.. ++......|+..+.... .+ .|+++|+||+|+....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 24579999999998653 33333334666665442 22 6999999999987543
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=2.4e-18 Score=139.21 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc--CCCCC-----------Cc------ccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT--DSFPG-----------EY------VPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
.+..+|+++|.+|+|||||+++|+. +.+.. .+ ..++.......+.+++ +.+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4568999999999999999999985 22210 00 0011111112233444 56779999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..|...+..+++.+|++|+|+|+++..+.+... .|.. +... ++|+++++||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~-~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQ-ATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHH-HHHc--CCCEEEEEECCCcccc
Confidence 999888888899999999999999887766654 2543 3333 7999999999999764
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=133.39 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=82.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC-c-------ccceee-ccceeEEeCCEEEEEEEEeCCCCccccc------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE-Y-------VPTVFD-NYSAPFTVDGIPVSLGLWDTAGQEDYDR------ 69 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~-~-------~~t~~~-~~~~~~~~~~~~~~l~~~D~~G~~~~~~------ 69 (195)
-.++|+|+|++|+|||||++.|++..++.. + .++... .........+....+.+||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 357899999999999999999998765211 1 112111 1111122234456788999999765311
Q ss_pred -------------------cCCCCCCCccEEEEEEeCCCh-hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 70 -------------------LRPLSYPQTDVFLICYSVVSP-SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 70 -------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
+...++.++++.+++|..+.. .++......|+..+. .++|+++|+||+|+.......
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence 224456666655555554432 234333323666664 379999999999997654311
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+++..++..++ ++++++|++++.++.++|..+.+.++
T Consensus 187 ----------~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 187 ----------QFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp ----------HHHHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred ----------HHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 11256677777777 78999999999999999888887654
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=4.2e-18 Score=129.80 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=103.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----cccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----DRLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----~~~~~~~---~~~~d 79 (195)
.|+++|.+|+|||||++.+++... ...+..++.......+..++ ...+.+||+||.... ..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999998642 12233333222223334443 245669999997432 1222222 34689
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.++.++|++ ...+.++. .|...+.... .+.|.++++||+|+... . ..++........+ .+
T Consensus 238 ~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-------------~~~~l~~~l~~~g-~~ 300 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-------------AVKALADALAREG-LA 300 (416)
T ss_dssp EEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-------------HHHHHHHHHHTTT-SC
T ss_pred hhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-------------HHHHHHHHHHhcC-Ce
Confidence 999999998 44555544 2444443332 25799999999998654 1 1123333444444 68
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++.+||++++|+++++.+|.+.+.+...
T Consensus 301 vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998876543
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=2.1e-19 Score=133.30 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCcc-------------ccccCCCCCCCccEEEEEEeCCChhcH-HHHHHhhHHHHhhhCCCCcEEEEeeC
Q psy10443 54 VSLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICYSVVSPSSF-DNVTSKWYPELKHHCPDAPIILVGTK 119 (195)
Q Consensus 54 ~~l~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK 119 (195)
..+.+|||||... +......+++.+|++++|+|+++.... .... .+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcC
Confidence 3577999999753 334445577899999999997543211 1111 13333433 37899999999
Q ss_pred CCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE---eccCC---cccHHHHHHHHHHHHcC
Q psy10443 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME---CSALT---QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Sa~~---~~~v~~~~~~l~~~~~~ 181 (195)
+|+..... ...+........++ .++++ +|+.+ +.|+.+++..+.+.+..
T Consensus 208 ~Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT------------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC------------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch------------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99976531 11111110000111 23444 45555 68899999998887754
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=2.1e-19 Score=135.61 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=67.7
Q ss_pred EEEEEeCCCCccc-------------cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCC
Q psy10443 55 SLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKI 120 (195)
Q Consensus 55 ~l~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~ 120 (195)
.+.+||+||...+ ..+...+++++|++|+|+|.++.+.... .|+..+.... .+.|+++|+||+
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCC
Confidence 4679999998776 3445567889999999998765443221 2344444332 368999999999
Q ss_pred CcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHH
Q psy10443 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 174 (195)
|+..... ...+....+...++ .+++.+|++++.++++.+..
T Consensus 214 Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 214 DLMDKGT------------DAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GGCCTTC------------CSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCH
T ss_pred ccCCCcc------------cHHHHHcCcccccc-CCeEEEEECChHHhccCCCH
Confidence 9986531 22222222233334 67888898888887765444
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=2.5e-18 Score=130.73 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeE---------------------EeCC-EEEEEEEEeCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPF---------------------TVDG-IPVSLGLWDTAG 63 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~---------------------~~~~-~~~~l~~~D~~G 63 (195)
++|+++|.+|||||||+|+|++... ..+++.++........ .+++ ..+.+.|||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998753 2334334322222111 1233 246789999999
Q ss_pred Ccc----ccccCC---CCCCCccEEEEEEeCCCh
Q psy10443 64 QED----YDRLRP---LSYPQTDVFLICYSVVSP 90 (195)
Q Consensus 64 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 90 (195)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 457899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.74 E-value=1.7e-17 Score=116.95 Aligned_cols=156 Identities=15% Similarity=0.051 Sum_probs=94.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc------------c-eeEEeC------------------CEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY------------S-APFTVD------------------GIP 53 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~------------~-~~~~~~------------------~~~ 53 (195)
+..+|+++|.+|||||||+++|...........+....+ . ....++ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999986421111111100000 0 001111 122
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.+||++|+..... .+....+.+++|+|+++.... .. .+.... +.|.++++||+|+.....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~-~~~~~~-----~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VE-KHPEIF-----RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HH-HCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hh-hhhhhh-----hcCCEEEEecccCCcchh------
Confidence 4566999998521111 111356889999999875432 11 122221 478899999999865311
Q ss_pred hcCCCCccHHHHHHHHHHcC-CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 134 EQNLSPVKREQGQKLANKIR-AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
...++...+...++ ..+++++||++|.|+++++++|.+.+....
T Consensus 172 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 172 ------ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred ------hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 23344555555443 368999999999999999999999886554
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.71 E-value=2.9e-19 Score=134.44 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=90.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCc------cccee--------------------eccc--------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEY------VPTVF--------------------DNYS-------------- 44 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~------~~t~~--------------------~~~~-------------- 44 (195)
...+|+|+|.+|||||||+++|++..+.... .|+.. ..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3469999999999999999999997763211 12200 0000
Q ss_pred ----------eeEEeC-CEEEEEEEEeCCCCcc-------------ccccCCCCCCCcc-EEEEEEeCCChhcHHHHHHh
Q psy10443 45 ----------APFTVD-GIPVSLGLWDTAGQED-------------YDRLRPLSYPQTD-VFLICYSVVSPSSFDNVTSK 99 (195)
Q Consensus 45 ----------~~~~~~-~~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 99 (195)
..+.+. .....+.||||||... +..+...|+.+++ ++++|.|++....-.+.. .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence 000110 0124577999999532 2334445565555 555566665422211111 1
Q ss_pred hHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH--HHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 100 WYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ--KLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 100 ~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+...+.. .+.|+++|+||+|+...... ..+... .+....+..+++.+||+++.|++++++.+.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~------------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTD------------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCC------------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchh------------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333332 37899999999999764320 000000 0001122246788999999999999999876
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.71 E-value=2.4e-16 Score=124.38 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=81.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--C---------------CCCcccc------eeeccceeEEeCCEEEEEEEEeC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--F---------------PGEYVPT------VFDNYSAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~---------------~~~~~~t------~~~~~~~~~~~~~~~~~l~~~D~ 61 (195)
+.-||+|+|..++|||||..+|+... + ...+.+. +.......+.+++ +.++++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 45699999999999999999986310 0 0011111 1111112344555 56779999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
|||..|.......++-+|++|+|+|+.+.---+... .|...... ++|.++++||+|....+
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~~---~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRMR---ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHHT---TCCEEEEEECTTSCCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHHh---CCceEEEEecccchhcc
Confidence 999999998899999999999999999876555544 36444443 89999999999986544
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.71 E-value=2e-18 Score=122.23 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=91.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-------------eeEEeC-CEE-----------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-------------APFTVD-GIP----------------- 53 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~----------------- 53 (195)
+..+|+++|.+|||||||+++|+...+...+.++....+. ....++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999986554444444433322 111111 110
Q ss_pred --EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh
Q psy10443 54 --VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL 131 (195)
Q Consensus 54 --~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 131 (195)
..+.+.|++|.-... ..+-...+.++.++|+.+...... .....+ +.|.++++||+|+....
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~----- 180 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAV----- 180 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHH-----
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchh-----
Confidence 124455665531110 011123345566777533221110 011111 46889999999986532
Q ss_pred hhhcCCCCccHHHHHHHHHHc-CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 132 LSEQNLSPVKREQGQKLANKI-RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
....++...++..+ ...+++++||++|.|++++|++|.+.+..
T Consensus 181 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 181 -------GADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp -------TCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 13345566666654 24689999999999999999999887653
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=1.7e-17 Score=124.92 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=68.5
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.||||||-... ....+..+|++++|+|.+..+..+.+. ....+.|+++|+||+|+........
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~~~--- 237 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEARL--- 237 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHHHH---
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHHHH---
Confidence 45669999994321 223357899999999987655442221 1112458999999999865422110
Q ss_pred hcCCCCccHHHHHHHHHHc------CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 134 EQNLSPVKREQGQKLANKI------RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+........ +..+++.+||++|.|+++++++|.+.+..
T Consensus 238 -------~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 -------AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp -------HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 011122111111 13679999999999999999999887653
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=6.8e-17 Score=133.22 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=84.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCC------Cc----------ccceeecc-ceeEE------------eCCE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPG------EY----------VPTVFDNY-SAPFT------------VDGI 52 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~------~~----------~~t~~~~~-~~~~~------------~~~~ 52 (195)
++..||+|+|+.|+|||||+++|+.. .... .+ ..|..... ...+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45679999999999999999999863 1110 00 00111000 01111 2345
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
.+.+++|||||+.+|...+..+++.+|++|+|+|+++..+.+... .|...... ++|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~~---~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALGE---RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHHT---TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---CCCeEEEEECCCcch
Confidence 788999999999999999999999999999999999988877654 35544432 789999999999863
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=2.7e-15 Score=112.15 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc--
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD-- 68 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~-- 68 (195)
++|+++|.+|||||||+++|++..+ ..+++.++.......+.+.+. ...+.+||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999998763 233444443322333444442 2568899999987653
Q ss_pred --ccCCC---CCCCccEEEEEEeCCC
Q psy10443 69 --RLRPL---SYPQTDVFLICYSVVS 89 (195)
Q Consensus 69 --~~~~~---~~~~~d~~i~v~d~~~ 89 (195)
.+... +++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23333 3689999999999986
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.65 E-value=7.8e-17 Score=120.85 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=60.9
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.++||+|-... .......+|++++|+|++++...+... ..+ ...|.++++||+|+.......
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK~Dl~~~~~~~---- 231 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTKSDGDLIVPAR---- 231 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH----
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEeeecCCCchhHH----
Confidence 34569999994311 123456899999999998764332221 111 145789999999986532100
Q ss_pred hcCCCCccHHHHHHHHHH---------cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANK---------IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.....+... .+..+++.+||++|.|+++++++|.+.+.
T Consensus 232 ---------~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 232 ---------RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ---------HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 011112111 11357899999999999999999988653
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=1.1e-16 Score=126.40 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=77.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC---CCcccceeeccce------eEEeC-----------------------CE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP---GEYVPTVFDNYSA------PFTVD-----------------------GI 52 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~t~~~~~~~------~~~~~-----------------------~~ 52 (195)
...+|+|+|.+|+|||||+|+|++..+. ....+++...... ....+ +.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4689999999999999999999998753 2222332110000 00000 00
Q ss_pred E---------EEEEEEeCCCCcc-----------ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc
Q psy10443 53 P---------VSLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP 112 (195)
Q Consensus 53 ~---------~~l~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 112 (195)
. ..+.||||||... +......++..+|++++|+|+++........ .|+..+... +.|
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~p 220 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--EDK 220 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--GGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--CCC
Confidence 0 2477999999764 2233445667899999999998754333333 355555543 579
Q ss_pred EEEEeeCCCcccch
Q psy10443 113 IILVGTKIDLREDR 126 (195)
Q Consensus 113 ~vvv~nK~D~~~~~ 126 (195)
+++|+||+|+....
T Consensus 221 vilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 221 IRVVLNKADMVETQ 234 (550)
T ss_dssp EEEEEECGGGSCHH
T ss_pred EEEEEECCCccCHH
Confidence 99999999998654
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.64 E-value=7.8e-17 Score=129.43 Aligned_cols=177 Identities=14% Similarity=0.037 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc--CCCCCC----cccceee----------cc-ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT--DSFPGE----YVPTVFD----------NY-SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~--~~~~~~----~~~t~~~----------~~-~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-||+|+|+.++|||||..+|+. +.+... ...+..+ .. +....+....+.++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5899999999999999999864 211110 0001000 00 11122222335677999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh--hhhh-cCCC--------
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN--LLSE-QNLS-------- 138 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~~~~-~~~~-------- 138 (195)
.....++-+|++|+|+|+.+.-.-+... .|...... ++|.++++||+|....+.... .+.+ ....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRI-LFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHH-HHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 8889999999999999998765444433 35544444 789999999999865432111 0100 0000
Q ss_pred ----------------------------------CccHH----HHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 139 ----------------------------------PVKRE----QGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 139 ----------------------------------~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
..... ............|++..||+++.|++.+++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 00000 0011112223467888999999999999999999888
Q ss_pred CCCcccc
Q psy10443 181 RPEPVKR 187 (195)
Q Consensus 181 ~~~~~~~ 187 (195)
.+.....
T Consensus 239 ~p~~~~~ 245 (638)
T 3j25_A 239 SSTHRGP 245 (638)
T ss_dssp CSGGGSC
T ss_pred Ccccchh
Confidence 7765443
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=9.4e-16 Score=110.77 Aligned_cols=126 Identities=15% Similarity=0.058 Sum_probs=70.8
Q ss_pred EEEEEEeCCCCccccccCC------CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHh-hhCCCCcEEEEeeCCCcccch
Q psy10443 54 VSLGLWDTAGQEDYDRLRP------LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+.+.+|||||+..+..... ..+.. +++++++|++...+.......+..... ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4677999999876543221 13456 899999998654333332211111111 112368999999999987643
Q ss_pred Hhhhhhhhc-CCCCccHH-------------HHHHHHHHcCC-ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 127 ETLNLLSEQ-NLSPVKRE-------------QGQKLANKIRA-VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 127 ~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
......... ........ ...++...++. .+++++||+++.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 211100000 00000000 00111234432 47899999999999999999988764
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=1.2e-14 Score=118.30 Aligned_cols=115 Identities=15% Similarity=0.048 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--------CCCCC--cccceeec---------cceeEEeC-----CEEEEEEEEeCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--------SFPGE--YVPTVFDN---------YSAPFTVD-----GIPVSLGLWDTA 62 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--------~~~~~--~~~t~~~~---------~~~~~~~~-----~~~~~l~~~D~~ 62 (195)
-||+|+|+.++|||||..+|+.. ..... +..+.... ....+.+. ...+.++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 49999999999999999998642 11100 00010000 01122222 235789999999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
||..|.......++-+|++|+|+|+.+.-..+... .|.+..+. ++|.++++||+|....
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~~---~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANKY---GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHHH---TCCEEEEEECSSSTTC
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHHc---CCCeEEEEccccccCc
Confidence 99999998889999999999999999865555443 36555555 7999999999998643
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.60 E-value=8.9e-15 Score=109.96 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCC-------------------EEEEEEEEeCCCCcc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDG-------------------IPVSLGLWDTAGQED 66 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~~~D~~G~~~ 66 (195)
++|+++|.+|||||||+++|++... ..+++.++.........+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999998542 23333333221111122211 235688999999876
Q ss_pred ccc----cCC---CCCCCccEEEEEEeCCC
Q psy10443 67 YDR----LRP---LSYPQTDVFLICYSVVS 89 (195)
Q Consensus 67 ~~~----~~~---~~~~~~d~~i~v~d~~~ 89 (195)
+.+ +.. ..++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 211 23678999999999985
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.59 E-value=5.2e-16 Score=116.15 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=64.4
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.+|||||....... ....+|++++|+|+++.+..+.+ .... .+.|.++|+||+|+........
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l----~~~~----~~~p~ivv~NK~Dl~~~~~~~~--- 214 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI----KKGL----MEVADLIVINKDDGDNHTNVAI--- 214 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC----CHHH----HHHCSEEEECCCCTTCHHHHHH---
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH----HHhh----hcccCEEEEECCCCCChHHHHH---
Confidence 45669999996543322 35899999999999765432111 1111 1468899999999865421100
Q ss_pred hcCCCCccHHHHHHHHHHcC------CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANKIR------AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
..++.......++ ..+++++||++|.|+++++++|.+.+.
T Consensus 215 -------~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 -------ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -------HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0011222112221 357899999999999999999988664
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.55 E-value=2.7e-15 Score=121.34 Aligned_cols=157 Identities=18% Similarity=0.127 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeecc-----------------------------------------
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNY----------------------------------------- 43 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~----------------------------------------- 43 (195)
..+|+|+|.+++|||||+|.|++..+ +....+++....
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 35999999999999999999999765 222111111000
Q ss_pred -----c---eeEEeC-CEEEEEEEEeCCCCccc-------------cccCCCCC-CCccEEEEEEeCCChhcHHHHHHhh
Q psy10443 44 -----S---APFTVD-GIPVSLGLWDTAGQEDY-------------DRLRPLSY-PQTDVFLICYSVVSPSSFDNVTSKW 100 (195)
Q Consensus 44 -----~---~~~~~~-~~~~~l~~~D~~G~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~ 100 (195)
+ ....+. .....+.|+||||-... ..+...++ ..+|++++|+|+++.....+.. .+
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-~l 209 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KI 209 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-HH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-HH
Confidence 0 000000 00113669999994331 11222232 5789999999998754333332 24
Q ss_pred HHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH---HHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 101 YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK---LANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 101 ~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+..+... +.|+++|+||+|+..... ... .... +....+..+++.+||++|.|++++++.+.+
T Consensus 210 l~~L~~~--g~pvIlVlNKiDlv~~~~------------~~~-~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEVDPQ--GQRTIGVITKLDLMDEGT------------DAR-DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHCTT--CSSEEEEEECTTSSCTTC------------CSH-HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHhc--CCCEEEEEeCcccCCcch------------hhH-HHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4444443 789999999999986532 111 1110 000123346788999999999999999887
Q ss_pred H
Q psy10443 178 A 178 (195)
Q Consensus 178 ~ 178 (195)
.
T Consensus 275 e 275 (772)
T 3zvr_A 275 E 275 (772)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.54 E-value=1.4e-15 Score=104.11 Aligned_cols=111 Identities=10% Similarity=0.042 Sum_probs=70.4
Q ss_pred CCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhh---HHHHhhh--CCCCcEEEEeeCC-CcccchHhhhhhhh
Q psy10443 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKW---YPELKHH--CPDAPIILVGTKI-DLREDRETLNLLSE 134 (195)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~vvv~nK~-D~~~~~~~~~~~~~ 134 (195)
.+||...+.+|..|+.++|++|||+|++|.+..+ ....+ ...+... ..++|++|++||. |+...-...+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3489999999999999999999999999986543 33223 3334332 2689999999995 67554322222221
Q ss_pred cCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 135 QNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.+.. . . ..+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 188 L~L~~--------l--~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 188 LHLNL--------L--N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TTGGG--------G--C-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred cCCcC--------C--C-CCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 11110 0 1 3377899999999999999999988775543
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.9e-14 Score=104.30 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-------CCCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-------RPLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-------~~~~~~~~ 78 (195)
.+|+++|.||||||||+|+|++... ..+++.|+.+.....+.+.+..+ +++|+||-..-... ....++.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i--~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI--QMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE--EEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE--EEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 5899999999999999999998643 35677777776677778888655 59999995332111 11235679
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
|++++|+|+++|..-......-+..........|..+++||.|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999987443322211122222223457888899999974
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.51 E-value=9e-14 Score=102.31 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=78.0
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCcc-
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVK- 141 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~- 141 (195)
++++..+.+.+++++|++++|+|+++++ ++..+. .|+..+.. .++|+++|+||+|+..... +.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~--~~~~~ilV~NK~DL~~~~~------------v~~ 130 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEY--FKVEPVIVFNKIDLLNEEE------------KKE 130 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHH--TTCEEEEEECCGGGCCHHH------------HHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHh--CCCCEEEEEEcccCCCccc------------cHH
Confidence 7888888899999999999999999986 777655 58776665 4899999999999976421 11
Q ss_pred HHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 142 REQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.++...+....+ .+++++||++|.|+++++..+..
T Consensus 131 ~~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 131 LERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhccC
Confidence 234555666666 68999999999999999987643
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=4.5e-13 Score=99.99 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.|+||+|..... ......+|.+++|+|++..+..+.+. ..+. ..|.++++||+|+.....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEEchhccCchh------
Confidence 345599999964321 12346889999999987543322111 1111 235577789999754321
Q ss_pred hcCCCCccHHHHHHHHHHc---C------CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANKI---R------AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
......+.+.... . ..+++.+||+++.|++++++.|.+...
T Consensus 211 ------~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 ------RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ------HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111222222211 1 257889999999999999999988653
No 210
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.41 E-value=3.5e-14 Score=101.81 Aligned_cols=112 Identities=10% Similarity=0.015 Sum_probs=75.4
Q ss_pred CCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHH--hhHHHHhhh--CCCCcEEEEeeC-CCcccchHhhhhhhhc
Q psy10443 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTS--KWYPELKHH--CPDAPIILVGTK-IDLREDRETLNLLSEQ 135 (195)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~--~~~~p~vvv~nK-~D~~~~~~~~~~~~~~ 135 (195)
.+||+..+.+|..|+.++|++|||+|++|.+.++...+ .+...+... ..++|++|++|| .|+...-...+..+.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L 273 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 273 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHc
Confidence 46899999999999999999999999999876542211 122344332 368999999996 5886553222222221
Q ss_pred CCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 136 NLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
.+.. . . ..+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 274 ~L~~--------l--~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 274 HLNL--------L--N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TGGG--------G--C-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred CCcc--------C--C-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 1110 0 1 3377899999999999999999999886544
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=102.74 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=49.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~ 68 (195)
..++|+++|.+|||||||+++|++..+. .+++.++.......+.+.+. ...+.+||+||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4679999999999999999999987542 22333333222333333332 2358899999987654
Q ss_pred c-------cCCCCCCCccEEEEEEeCCChhc
Q psy10443 69 R-------LRPLSYPQTDVFLICYSVVSPSS 92 (195)
Q Consensus 69 ~-------~~~~~~~~~d~~i~v~d~~~~~s 92 (195)
+ .+..+++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 23345779999999999986544
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.14 E-value=5.3e-11 Score=89.82 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
.+++|..+...+.+.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.... ...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-------------~~~ 115 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-------------VKH 115 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-------------SCH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-------------cCH
Confidence 45788888888899999999999999863 23666666666689999999999997542 222
Q ss_pred HHHH----HHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 143 EQGQ----KLANKIRA--VKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 143 ~~~~----~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++.. .+++..+. .+++.+||++|.|++++++.+.+..
T Consensus 116 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 116 DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2333 33555552 2789999999999999999997754
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.04 E-value=1.9e-10 Score=86.83 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
.++.|.+....+++.++++++|+|++++.+ .|...+.....+.|+++|+||+|+.... ...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-------------~~~ 117 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-------------VKY 117 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-------------CCH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-------------cCH
Confidence 478888888888889999999999999874 3555555555689999999999997642 222
Q ss_pred HHHHH----HHHHcCC--ceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 143 EQGQK----LANKIRA--VKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 143 ~~~~~----~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+...+ +.+..+. .+++.+||++|.|++++++.+.+..
T Consensus 118 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 23333 3455553 3689999999999999999998765
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=1.4e-09 Score=82.88 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcc----cc-eeeccceeEEeCCEEEEEEEEeCCCCcccc-------------
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYV----PT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------------- 68 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~----~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------------- 68 (195)
++++|+|++|+|||||++.+++..+.+... +. ............+....+.++|++|-....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 569999999999999999999865432111 11 111111111112223367799998743210
Q ss_pred ------------ccCC--CCCCCc--c-EEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 69 ------------RLRP--LSYPQT--D-VFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 69 ------------~~~~--~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
.... .....+ | +++|+.|...+-+..++ .++..+. .++|+++|.||+|...+.+
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchHH
Confidence 0000 022233 3 35567776544333332 2444443 4799999999999887654
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=6.4e-10 Score=84.19 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=58.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~ 67 (195)
+..++.++|.+|+|||||++.|++... ..+++.++.......+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999999653 344444454444455555541 135779999995432
Q ss_pred cc-------cCCCCCCCccEEEEEEeCCC
Q psy10443 68 DR-------LRPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 68 ~~-------~~~~~~~~~d~~i~v~d~~~ 89 (195)
.+ .....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 12233578999999999874
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=3.4e-11 Score=90.94 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC------CC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC----CC-
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD------SF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----PL- 73 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----~~- 73 (195)
..+|+++|.+|+|||||+|.|++. .. ...+..|+.... ...++. . +.++||||-.....+. ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~-~--~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLES-G--ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECST-T--CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCC-C--eEEEeCCCcCcHHHHHHHHhHHH
Confidence 457999999999999999999975 11 112222222211 122222 1 5699999953322111 11
Q ss_pred ---C--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 74 ---S--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 74 ---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+ -...+.++++++....-....+. .+..+.. .+.|+++++||.|..+..
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~~--~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLA--RLDYIKG--GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEE--EEEEccC--CCceEEEEecCCcccccc
Confidence 1 15679999999974321111111 1222222 368999999999998754
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=2.9e-09 Score=77.03 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCc--------ccceeeccceeEEe--CCEEEEEEEEeCCCCcccc-------
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEY--------VPTVFDNYSAPFTV--DGIPVSLGLWDTAGQEDYD------- 68 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~--------~~t~~~~~~~~~~~--~~~~~~l~~~D~~G~~~~~------- 68 (195)
.++++++|++|+|||||++.+++...+... .+.........+.. .+....+.++|++|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999984322110 00000000111111 2222367799998732110
Q ss_pred ---------------------ccCCCCCCCccEEEEEEeCC-ChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 69 ---------------------RLRPLSYPQTDVFLICYSVV-SPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 69 ---------------------~~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
......+..+++.++++|.. .+-+-.+. ..+..+.. .+++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCCHH
Confidence 00112233468889999854 33232222 24445544 38999999999988765
Q ss_pred H
Q psy10443 127 E 127 (195)
Q Consensus 127 ~ 127 (195)
+
T Consensus 157 e 157 (270)
T 3sop_A 157 E 157 (270)
T ss_dssp H
T ss_pred H
Confidence 4
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.95 E-value=1.8e-10 Score=89.80 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=82.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhh------cCCC----CCCcccceee-------cccee-EE-----------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYT------TDSF----PGEYVPTVFD-------NYSAP-FT----------------- 48 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~------~~~~----~~~~~~t~~~-------~~~~~-~~----------------- 48 (195)
.++..|+++|.+||||||+++.|. +... .+.+.+...+ ..... +.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 356789999999999999999998 3211 0111111100 00000 00
Q ss_pred eCCEEEEEEEEeCCCCccccc-cCCC---C--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcE-EEEeeCCC
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDR-LRPL---S--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKID 121 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK~D 121 (195)
.....+.+.|+||||...... +... . ...+|.+++|+|++....... ....+.. .+|+ .+|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCc
Confidence 000224566999999753221 1100 0 126899999999987543222 2222332 2574 88899999
Q ss_pred cccchHhhhhhhhcCCCCccHHHHHHHHHHcC-----------------CceeEEeccCCccc-HHHHHHHHHHH
Q psy10443 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIR-----------------AVKYMECSALTQRG-LRQVFDEAVRA 178 (195)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~-v~~~~~~l~~~ 178 (195)
...... ........++ ..+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g----------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864321 0111111111 11234479999999 99999998776
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.94 E-value=7.7e-11 Score=88.91 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--------CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC-----
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--------GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP----- 72 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~----- 72 (195)
..+|+++|.+|+|||||+|.|++.... .....|+... ....+.+. +.++||||-.....+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 458999999999999999999885211 1112222111 11222221 56999999543221111
Q ss_pred -----CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 73 -----LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 73 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
......+.++++++.........+. .+..+.. .+.|+++++||.|..+..
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceE--EEEEecC--CCceEEEEecCccccccc
Confidence 0134678889998874221111111 1222222 368999999999998764
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=1.5e-09 Score=78.93 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=66.5
Q ss_pred EEeCCCCc-cccccCCCCCCCccEEEEEEeCCChhcHHH-HHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 58 LWDTAGQE-DYDRLRPLSYPQTDVFLICYSVVSPSSFDN-VTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 58 ~~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+-.+|||. .........+.++|+++.|+|+.++.+... ....|+ .+.|.++|+||+|+.....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~-------- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAV-------- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHH--------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHH--------
Confidence 44678875 333344556789999999999999876542 111122 4789999999999976421
Q ss_pred CCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 136 NLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+...++.+..+ .+++.+||+++.|+++++..+.+.+.
T Consensus 68 ------~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 ------TQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ------HHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ------HHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 122233333334 58899999999999999998877664
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.80 E-value=3.3e-08 Score=75.39 Aligned_cols=167 Identities=12% Similarity=0.105 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eecc-ceeEEe-CCEEEEEEEEeCCCCcccccc-----CCCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRL-----RPLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~-----~~~~~~~ 77 (195)
...++++|++|+|||||++.+.+...+....-+. +... ...+.. ....-.+.+||++|-...... ....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4589999999999999999999843211111000 0000 001111 111113569999984321110 1111233
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH----HHHHHH----
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE----QGQKLA---- 149 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---- 149 (195)
.+.+++ ++..... -+.+ .+...+... +.|+++|.||.|+.--+++..-. .....+ .+.++.
T Consensus 149 ~~~~~~-lS~G~~~-kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgL-----D~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 149 YDFFII-ISATRFK-KNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEP-----QTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp CSEEEE-EESSCCC-HHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCC-----TTCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEE-eCCCCcc-HHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccC-----CHHHHHHHHHHHHHHHHHHH
Confidence 455554 6765211 1111 123333332 68999999999975322221110 111222 223332
Q ss_pred HHc--CCceeEEecc--CCcccHHHHHHHHHHHHcCCC
Q psy10443 150 NKI--RAVKYMECSA--LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~~--~~~~~~~~Sa--~~~~~v~~~~~~l~~~~~~~~ 183 (195)
.+. ....++.+|+ .++.|++++.+.+.+.+.+..
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 121 2235788999 556679999999988876544
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.62 E-value=5.4e-08 Score=70.80 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=34.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
...++++++|.||||||||+|+|.+.... .....++.... .+..+ . .+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~--~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG-K--ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET-T--TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeC-C--CEEEEECcCcC
Confidence 35689999999999999999999986531 22222322221 12222 2 35699999954
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.56 E-value=9.1e-08 Score=73.40 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=61.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC------CC----CCCcccce-------eeccceeEEe-----C------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD------SF----PGEYVPTV-------FDNYSAPFTV-----D------------ 50 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~------~~----~~~~~~t~-------~~~~~~~~~~-----~------------ 50 (195)
++..|+++|.+|+||||++..|... .. .+.+.+.. ......++.. +
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999888641 10 01111110 0000000000 0
Q ss_pred -CEEEEEEEEeCCCCccccccCC------CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 51 -GIPVSLGLWDTAGQEDYDRLRP------LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 51 -~~~~~l~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
...+.+.++||||......... .....+|.+++|+|++......... ..+... -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHhh--CCCeEEEEECCCCc
Confidence 0124566999999543221000 1122578999999998654332222 233321 23556889999986
Q ss_pred cc
Q psy10443 124 ED 125 (195)
Q Consensus 124 ~~ 125 (195)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.54 E-value=5e-08 Score=70.19 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCcc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++++++|.+|+|||||+|+|.+..... ..++.+.... ..+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 599999999999999999999865421 1111111111 112222 2456999999654
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.51 E-value=1.2e-07 Score=75.25 Aligned_cols=63 Identities=19% Similarity=0.087 Sum_probs=39.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEe-----CCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-----DGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~-----~~~~~~l~~~D~~G~~~ 66 (195)
.+.+.|+|+|.+|+|||||+|+|++....-...+++.........+ ......+.++||||-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3567899999999999999999998753223333332222221111 11223456999999543
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.50 E-value=1e-07 Score=69.91 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=60.9
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+-+.+.+..+.++|.+++|+|+.+|..-....+.++..... .++|.++|+||+|+..+..... ..+..
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~----------~~~~~ 142 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTED----------TIQAY 142 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHH----------HHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHH----------HHHHH
Confidence 44455566788999999999999876554444445444433 3789999999999987531000 01122
Q ss_pred HHHHHHcCCceeEEeccCCcccHHHHHH
Q psy10443 146 QKLANKIRAVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 173 (195)
..+....+ .+++.+||.++.|+++++.
T Consensus 143 ~~~y~~~g-~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 143 AEDYRNIG-YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHHHHT-CCEEECCHHHHTTCTTTGG
T ss_pred HHHHHhCC-CeEEEEecCCCCCHHHHHh
Confidence 23333345 5788889888887766544
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.48 E-value=8.4e-08 Score=69.03 Aligned_cols=94 Identities=7% Similarity=-0.005 Sum_probs=60.1
Q ss_pred CCCCccc-cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCC
Q psy10443 61 TAGQEDY-DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSP 139 (195)
Q Consensus 61 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~ 139 (195)
+|||... .......+.++|+++.|+|+.++.+..... . .. . +.|.++|+||+|+.....
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l-~l----l-~k~~iivlNK~DL~~~~~------------ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--V-DF----S-RKETIILLNKVDIADEKT------------ 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--S-CC----T-TSEEEEEEECGGGSCHHH------------
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--H-Hh----c-CCCcEEEEECccCCCHHH------------
Confidence 5776532 223445678999999999999886654321 1 11 1 789999999999976421
Q ss_pred ccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 140 VKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+....+.+..+ .++ .+||+++.|+++++..+.+.
T Consensus 64 --~~~~~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 --TKKWVEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --HHHHHHHHHHTT-CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --HHHHHHHHHHcC-CeE-EEECCCCcCHHHHHHHHHHh
Confidence 122333344444 567 99999999999988876543
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.39 E-value=1.8e-06 Score=66.35 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC------CC---C-CCccc----------------------ceeec--c--ceeEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD------SF---P-GEYVP----------------------TVFDN--Y--SAPFT 48 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~------~~---~-~~~~~----------------------t~~~~--~--~~~~~ 48 (195)
++..|+++|.+|+||||++..|... .. . ..+.+ ++.+. . .....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999888762 00 0 00100 00000 0 00000
Q ss_pred eCCEEEEEEEEeCCCCccccc-----c-CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCC-c-EEEEeeCC
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDR-----L-RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-P-IILVGTKI 120 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~vvv~nK~ 120 (195)
. ..+.+.++||||...... + ....+..+|.+++|+|++.... ... ....+. ..+ | ..+|+||.
T Consensus 178 ~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 178 F--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK---EAVGEIGSIIVTKL 248 (432)
T ss_dssp T--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH---TTSCSCEEEEEECS
T ss_pred h--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh---hcccCCeEEEEeCC
Confidence 1 234556999999654211 0 0112336899999999875532 221 122222 245 6 88999999
Q ss_pred Cccc
Q psy10443 121 DLRE 124 (195)
Q Consensus 121 D~~~ 124 (195)
|...
T Consensus 249 D~~~ 252 (432)
T 2v3c_C 249 DGSA 252 (432)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9754
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.26 E-value=3.1e-07 Score=70.37 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-|+++|.+||||||++..|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999998886
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.19 E-value=4e-08 Score=76.56 Aligned_cols=113 Identities=13% Similarity=-0.002 Sum_probs=63.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccc--cccC--------C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDY--DRLR--------P 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~--~~~~--------~ 72 (195)
..+.+|+++|.+|+||||+.++|..... ....++...... ......+......+||..|.+.+ +..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999876421 111122211100 00011111123358898887332 2222 4
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
.++...++.++|+|.++. +..... .|...++.. +.+++.+-..++
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEEEECC
Confidence 455567888999999987 344333 466666654 445555544444
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.14 E-value=2e-06 Score=69.07 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999864
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.11 E-value=1.2e-05 Score=60.17 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=54.7
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH---H
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN---K 151 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 151 (195)
..++|.+++|... +|..-....+.++...... ++|.++|+||+|+..+.. .+....|.. .
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~--------------~~~~~~~~~~y~~ 190 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG--------------MDFVNEQMDIYRN 190 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH--------------HHHHHHHHHHHHT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh--------------HHHHHHHHHHHHh
Confidence 5689999987554 5654444434455444333 788899999999986531 111233333 3
Q ss_pred cCCceeEEeccCCcccHHHHHHHH
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
.+ .+++.+|+.++.|++++...+
T Consensus 191 ~G-~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 191 IG-YRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TT-CCEEECBTTTTBTHHHHHHHH
T ss_pred CC-CcEEEEecCCCcCHHHHHHhc
Confidence 44 678999999999999887653
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.09 E-value=3.7e-06 Score=61.52 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=51.1
Q ss_pred EEEEEEeCCCCcc--ccc-cCC-----CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 54 VSLGLWDTAGQED--YDR-LRP-----LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 54 ~~l~~~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
+.+.++||||... ... +.. .....+|.+++|+|++... +... ....+.. ..| ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh---hCCCCEEEEeCCCCCc
Confidence 4566999999765 211 110 1233689999999987432 2221 1222222 356 678899999754
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHH
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 170 (195)
.. ..........+ .|+..++ .|+++++
T Consensus 254 ~~----------------g~~~~~~~~~~-~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 KG----------------GGALSAVAATG-ATIKFIG--TGEKIDE 280 (297)
T ss_dssp TH----------------HHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred ch----------------HHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence 31 23344555565 5666654 4555543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.80 E-value=3.5e-05 Score=59.38 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-.-|.|+|.+++|||+|+|.|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 345689999999999999999985
No 235
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.71 E-value=2e-05 Score=54.51 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.+.+...|+++|++|||||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 6677788999999999999999998876
No 236
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.62 E-value=3.4e-05 Score=53.11 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=23.9
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
|+-++...|+++|++||||||+++.|.+..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 566677789999999999999999998753
No 237
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.58 E-value=5.6e-05 Score=51.35 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+++....|++.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 7777677899999999999999998865
No 238
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.56 E-value=5.4e-05 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|..++..+|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 55567789999999999999999988653
No 239
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.56 E-value=4.2e-05 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.54 E-value=5e-05 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..+.-.|+++|++||||||+++.|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998875
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.51 E-value=4.8e-05 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999863
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=6.7e-05 Score=51.40 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++.--|+|+|++|+|||||++.|.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 44557899999999999999999864
No 243
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.50 E-value=6.1e-05 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|..+++..|++.|.+||||||+.+.|..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445678899999999999999999875
No 244
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.49 E-value=7.6e-05 Score=51.48 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+...|++.|.+||||||+.+.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.47 E-value=9.8e-05 Score=49.46 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++.-.|+++|.+||||||+.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5567899999999999999998865
No 246
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.46 E-value=6e-05 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 247
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.46 E-value=6e-05 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=19.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.|+ +|+++|.+||||||+.+.|..
T Consensus 1 ~~~m~--~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 1 MSLAK--NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp ----C--CEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCC--EEEEEcCCCCCHHHHHHHHHH
Confidence 45443 699999999999999988865
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.45 E-value=9.7e-05 Score=50.16 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+.-.++++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999874
No 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.42 E-value=6.2e-05 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++++|++|||||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999874
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.36 E-value=0.00011 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
No 251
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.36 E-value=0.00012 Score=51.16 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=9.8e-05 Score=50.11 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.34 E-value=0.00014 Score=50.27 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988875
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.34 E-value=0.00011 Score=50.54 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.--++++|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.00013 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.108 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|+|.|.+||||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 256
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.32 E-value=0.00013 Score=51.16 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCC-CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSS-GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+. .+...|+|.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHH
Confidence 544 3457899999999999999998874
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..|++.|.+||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988864
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.31 E-value=0.00012 Score=51.19 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999998874
No 259
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.30 E-value=0.00012 Score=49.00 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchHHHHHHhh
Q psy10443 8 KCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~ 27 (195)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999755
No 260
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.28 E-value=0.00018 Score=48.60 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.28 E-value=0.00013 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998874
No 262
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.00045 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q psy10443 7 IKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~ 27 (195)
--++++|++|+|||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=0.00014 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.--|+++|++||||||+++.|...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446889999999999999999875
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.27 E-value=0.00017 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|+++|.+||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 265
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.27 E-value=0.00014 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998874
No 266
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.26 E-value=0.0002 Score=47.97 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999986
No 267
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.25 E-value=0.0002 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 268
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.24 E-value=0.0002 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|++.|.+|+||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999998874
No 269
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.00024 Score=48.69 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++..|++.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 270
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.24 E-value=0.00011 Score=50.44 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=43.2
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLR 123 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~ 123 (195)
+.+.++|+|+... ......+..+|.++++...+... ..+. .++..+... .++.++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5566999987642 23344566789999999876544 4443 244555432 4567889999999954
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.23 E-value=0.00021 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++-.|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 272
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.23 E-value=0.00025 Score=50.28 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=22.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++.+|++.|.+||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999865
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.23 E-value=0.00016 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..-|+|+|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998763
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.22 E-value=0.00022 Score=47.79 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.-|++.|.+||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999998763
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.00024 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00016 Score=49.58 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.--|+++|++|+||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999988875
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.19 E-value=0.00021 Score=47.53 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00023 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.|+++|.+||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998875
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.18 E-value=0.0002 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..|+++|.+||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.18 E-value=0.00021 Score=47.55 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCchHHHHHHh
Q psy10443 7 IKCVVVGDGTVGKTCMLISY 26 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l 26 (195)
..|++.|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 281
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.18 E-value=0.00028 Score=47.89 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 282
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.17 E-value=0.00026 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.+++.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 445678999999999999999988865
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.16 E-value=0.0003 Score=48.51 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=22.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998875
No 284
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.16 E-value=0.00023 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999998864
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.15 E-value=0.00023 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..|+++|.+||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.15 E-value=0.00023 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
=-++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998754
No 287
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00024 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 288
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00038 Score=47.73 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 289
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.14 E-value=0.00035 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00026 Score=49.08 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.13 E-value=0.00024 Score=48.20 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.11 E-value=0.0003 Score=48.59 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++|+++|+|||||+|...+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988763
No 293
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.10 E-value=0.00027 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|++|+|||||++.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999753
No 294
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.00022 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=16.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|++.|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 295
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.09 E-value=0.00028 Score=49.39 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 296
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.08 E-value=0.00031 Score=48.83 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
No 297
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.07 E-value=0.00032 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 298
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.07 E-value=0.00043 Score=48.07 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.06 E-value=0.00034 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 300
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.06 E-value=0.00032 Score=47.09 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|.+|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999863
No 301
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.06 E-value=0.00034 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.00029 Score=48.00 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999998876
No 303
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.05 E-value=0.0004 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.05 E-value=0.00051 Score=46.42 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|+++|.+|+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 305
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.04 E-value=0.00036 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 306
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.03 E-value=0.00036 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.03 E-value=0.00044 Score=47.27 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+++..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 46788999999999999999998864
No 308
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.03 E-value=0.00049 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+..-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567899999999999999998876
No 309
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.02 E-value=0.00036 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.02 E-value=0.00035 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998865
No 311
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.02 E-value=0.00036 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999864
No 312
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.01 E-value=0.00037 Score=47.84 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 313
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.01 E-value=0.00032 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888753
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.01 E-value=0.00058 Score=46.98 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|+++|.+|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999864
No 315
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.00053 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++..|+|+|.+|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999987654
No 316
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00039 Score=48.15 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.00 E-value=0.00027 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhh-cC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYT-TD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~-~~ 29 (195)
.--++++|++||||||+++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
No 318
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.00 E-value=0.0004 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999874
No 319
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.99 E-value=0.0004 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 320
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.99 E-value=0.00045 Score=48.96 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.99 E-value=0.00051 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 322
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.98 E-value=0.00045 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 323
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.97 E-value=0.00044 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 324
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.97 E-value=0.00043 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999999864
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.97 E-value=0.00042 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.=.++|+|++|+|||||++.+.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34789999999999999998875
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.96 E-value=0.00054 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+++|+.||||||+++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998876
No 327
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.96 E-value=0.00044 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 328
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.95 E-value=0.00041 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
=.++|+|++||||||+++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999876
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.95 E-value=0.00063 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++-|.++|++||||||+++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999988754
No 330
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.95 E-value=0.00037 Score=48.19 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 331
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.94 E-value=0.00047 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 332
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.94 E-value=0.00048 Score=49.03 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999874
No 333
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.94 E-value=0.00048 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
No 334
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.93 E-value=0.00045 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++..|+++|.+||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 335
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.93 E-value=0.00072 Score=46.39 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+..-|+++|.+|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988864
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.00024 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|.+|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998863
No 337
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.93 E-value=0.00069 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
+...|+++|++||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 338
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.92 E-value=0.00054 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
No 339
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.92 E-value=0.0005 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 340
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.91 E-value=0.00053 Score=49.35 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
No 341
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.91 E-value=0.0006 Score=50.29 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|++|+ ..|+|+|++|||||||...|..
T Consensus 1 ~~~m~-~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 1 MSSLP-PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp --CCC-EEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHH
Confidence 66665 3699999999999999988875
No 342
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.90 E-value=0.00049 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998753
No 343
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.90 E-value=0.00059 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999874
No 344
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.0015 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998743
No 345
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.89 E-value=0.00054 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.89 E-value=0.00063 Score=45.06 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 347
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.89 E-value=0.00065 Score=50.44 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=20.2
Q ss_pred CCCCc-ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGR-PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~-~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|++|. +.-|+|+|++|||||||...|..
T Consensus 1 ~~~m~m~~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 1 MTEMTKPFLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCceEEEECCCcCcHHHHHHHHHH
Confidence 66643 35799999999999999988875
No 348
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.89 E-value=0.00063 Score=47.86 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++++.|++.|++|+||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998874
No 349
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.86 E-value=0.00066 Score=47.39 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 350
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.86 E-value=0.00059 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998874
No 351
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.86 E-value=0.0006 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHhh
Q psy10443 8 KCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~ 27 (195)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 352
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.86 E-value=0.00052 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 353
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.86 E-value=0.00077 Score=47.36 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+..+|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 354
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.83 E-value=0.00073 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 355
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.82 E-value=0.00058 Score=51.39 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-+++|+|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998874
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.82 E-value=0.00087 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 357
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.82 E-value=0.00068 Score=46.15 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988875
No 358
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.00074 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999888763
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.0008 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
No 360
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.81 E-value=0.00048 Score=50.17 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=18.8
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|++ +.+-|+|.|.+||||||+.+.|..
T Consensus 1 Ms~-~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSK-KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CT-TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 554 455699999999999999988765
No 361
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.80 E-value=0.00053 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998863
No 362
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.78 E-value=0.00096 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|+++|.+||||||+.+.|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998875
No 363
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.78 E-value=0.00055 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988864
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.77 E-value=0.0008 Score=45.58 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 365
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.77 E-value=0.0024 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999999874
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.76 E-value=0.00029 Score=48.64 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 367
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.75 E-value=0.0011 Score=48.01 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998863
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.75 E-value=0.001 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+..-|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998876
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.00078 Score=45.77 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.74 E-value=0.00076 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998763
No 371
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.71 E-value=0.0013 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|++.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988763
No 372
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.71 E-value=0.0012 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++--++++|++|+||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998876
No 373
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.70 E-value=0.00095 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999998864
No 374
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.70 E-value=0.00086 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998863
No 375
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.68 E-value=0.00091 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
No 376
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.68 E-value=0.001 Score=44.22 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998865
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.68 E-value=0.0012 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999998875
No 378
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.67 E-value=0.0012 Score=43.82 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998865
No 379
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.66 E-value=0.0016 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.--++++|+.||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998876
No 380
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.65 E-value=0.0014 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|+|.|..||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999998874
No 381
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.63 E-value=0.0011 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5789999999999999998874
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.0016 Score=45.31 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+++|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999988875
No 383
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.63 E-value=0.0011 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999874
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.62 E-value=0.0012 Score=44.47 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988865
No 385
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.62 E-value=0.001 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998763
No 386
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.61 E-value=0.0011 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 387
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.61 E-value=0.0012 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4789999999999999999874
No 388
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.60 E-value=0.0016 Score=45.00 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|+++|.+|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 389
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.60 E-value=0.0012 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999874
No 390
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0012 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999999874
No 391
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.60 E-value=0.0009 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888753
No 392
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.59 E-value=0.002 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999874
No 393
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.59 E-value=0.0011 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++|+|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999874
No 394
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.57 E-value=0.0012 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.=.++|+|++||||||+++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999886
No 395
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.55 E-value=0.0013 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999874
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.53 E-value=0.0013 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999998863
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.53 E-value=0.0012 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.52 E-value=0.0013 Score=45.76 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 399
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.52 E-value=0.0015 Score=45.70 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988875
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0023 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.--++++|++||||||++..+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 455789999999999999998876
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.48 E-value=0.0011 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999999874
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0019 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-.+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999998875
No 403
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.47 E-value=0.0021 Score=44.87 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=22.2
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|...+..-|++.|.+|+||||+++.|..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445678899999999999999988764
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.47 E-value=0.0017 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999888753
No 405
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.44 E-value=0.0024 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.--++|+|.+|+||||+++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 455799999999999999998875
No 406
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.44 E-value=0.0016 Score=45.17 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|++.|.+|+||||+.+.|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988865
No 407
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.42 E-value=0.0019 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.-+++.|+||+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788889999999999998875
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0015 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.|+++|.+|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 409
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.41 E-value=0.0019 Score=43.40 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999765
No 410
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.40 E-value=0.0023 Score=46.65 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 411
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.40 E-value=0.0022 Score=43.85 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|.+.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.39 E-value=0.0016 Score=47.35 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.38 E-value=0.0018 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 414
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.38 E-value=0.0018 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998863
No 415
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.37 E-value=0.0017 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 416
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.37 E-value=0.0024 Score=43.51 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+.|.++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988753
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.36 E-value=0.0015 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999864
No 418
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.35 E-value=0.0025 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-.++|+|++||||||+++.+.+-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998743
No 419
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.35 E-value=0.0022 Score=41.46 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
....|++.|++|+|||++.+.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988764
No 420
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.002 Score=45.21 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.31 E-value=0.0021 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 422
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.30 E-value=0.0022 Score=44.08 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988875
No 423
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.27 E-value=0.0026 Score=45.91 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..-.+++.|++|+|||++++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998763
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.27 E-value=0.0029 Score=44.49 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+++|.+|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 425
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.26 E-value=0.0024 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=+++++|++|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 426
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.24 E-value=0.003 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
No 427
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.23 E-value=0.0037 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++.-|+++|.+||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999875
No 428
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.22 E-value=0.0024 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999888753
No 429
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.21 E-value=0.0032 Score=45.93 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999976654
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0022 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=.++|+|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998874
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.21 E-value=0.0024 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 432
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.20 E-value=0.0022 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|+||+|||+++..+.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888765
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.17 E-value=0.003 Score=41.16 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.2
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|+.|+|||||+..+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999988653
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.15 E-value=0.0027 Score=47.94 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344789999999999999998875
No 435
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0039 Score=43.93 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.-|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999988753
No 436
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.13 E-value=0.0036 Score=42.82 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...|+++|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999865
No 437
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.12 E-value=0.004 Score=44.66 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999988763
No 438
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.09 E-value=0.003 Score=46.15 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998863
No 439
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.08 E-value=0.003 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998875
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.05 E-value=0.0035 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999998864
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.04 E-value=0.0034 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=+++++|++|+|||||++.+.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999875
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.04 E-value=0.0049 Score=45.24 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|+|+|++|||||+|...|...
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHh
Confidence 3446899999999999999998764
No 443
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.04 E-value=0.0044 Score=43.41 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..+++.++|.|||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467999999999999999988865
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.03 E-value=0.0039 Score=49.38 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 445
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.02 E-value=0.0057 Score=45.65 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...+|+++|.+|+||||+...+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 446899999999999999977654
No 446
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.01 E-value=0.012 Score=45.46 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q psy10443 7 IKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~ 27 (195)
.=|.|+|..++|||+|+|.++
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 456699999999999999554
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.00 E-value=0.0034 Score=45.28 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988875
No 448
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.00 E-value=0.0062 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++--|+++|.+|+||||++..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345689999999999999988765
No 449
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.00 E-value=0.005 Score=42.66 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+..-|++.|.+|+||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5677899999999999999998864
No 450
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.00 E-value=0.0024 Score=41.19 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999887653
No 451
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.99 E-value=0.0035 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.-.++++|.+|+||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988753
No 452
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.98 E-value=0.0036 Score=48.74 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998876
No 453
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.97 E-value=0.0046 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHh
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISY 26 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l 26 (195)
.+.+|++++|.+.|||||++.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 46799999999999999999774
No 454
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.97 E-value=0.004 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.0036 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.++|.|++|+|||+|++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 456
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.97 E-value=0.004 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+..+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 457
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.0042 Score=43.63 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999877654
No 458
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.94 E-value=0.0047 Score=43.51 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+..-|++.|.+||||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999988765
No 459
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.93 E-value=0.0041 Score=43.57 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=18.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..-|+|.|.+||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988765
No 460
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.93 E-value=0.0037 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 461
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.0043 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-++++|+.|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998753
No 462
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.88 E-value=0.0048 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 463
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.87 E-value=0.0042 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=.++++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999998864
No 464
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.0038 Score=46.51 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 465
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.84 E-value=0.0043 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.0049 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998743
No 467
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.83 E-value=0.0046 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999887653
No 468
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.83 E-value=0.0071 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999888763
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.83 E-value=0.0046 Score=45.68 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+-.|++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998863
No 470
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.83 E-value=0.0056 Score=45.12 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999875
No 471
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.81 E-value=0.0061 Score=41.00 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
++|+|.++||||++..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.0047 Score=45.86 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 473
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.78 E-value=0.0037 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999888753
No 474
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0047 Score=45.50 Aligned_cols=26 Identities=4% Similarity=-0.023 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++-.+++.|+||+|||++++.+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999888763
No 475
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.77 E-value=0.0055 Score=46.08 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.1
Q ss_pred EEEEcCCCCchHHHHHHhh
Q psy10443 9 CVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~ 27 (195)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 476
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0051 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+--|++.|+||+|||+|++.+.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999876
No 477
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.76 E-value=0.0052 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..-.+++.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999998875
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.73 E-value=0.0062 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998753
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.73 E-value=0.0049 Score=49.40 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988864
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.72 E-value=0.0062 Score=40.65 Aligned_cols=23 Identities=13% Similarity=0.460 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-|++.|++|+||||+...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999999874
No 481
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0069 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+-.|++.|+||+|||+|++.+.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 355799999999999999999876
No 482
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.0059 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
No 483
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.70 E-value=0.0063 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988765
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.0059 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999888753
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.66 E-value=0.0061 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.63 E-value=0.0026 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998876
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.62 E-value=0.0063 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 488
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.61 E-value=0.0074 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999975
No 489
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.61 E-value=0.011 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.-|+|+|++|||||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345889999999999999998753
No 490
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.60 E-value=0.011 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-|+|+|+.|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998864
No 491
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.59 E-value=0.0051 Score=48.82 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|+++|.+|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567999999999999999998763
No 492
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.59 E-value=0.0069 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 493
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0083 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+-.|++.|+||+|||+|++.+.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999876
No 494
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.55 E-value=0.0065 Score=45.01 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.55 E-value=0.008 Score=44.48 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999998653
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.54 E-value=0.0078 Score=42.95 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...|++.|++|+|||++++.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 457999999999999999998764
No 497
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.53 E-value=0.01 Score=41.18 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|++-|.+|+||||+++.+...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999998763
No 498
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.52 E-value=0.0089 Score=41.41 Aligned_cols=24 Identities=25% Similarity=0.129 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+..=|++-|.+|+||||.++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999988765
No 499
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.52 E-value=0.0072 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988763
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.50 E-value=0.008 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...+++.|++|+|||++.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
Done!