RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10443
(195 letters)
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 352 bits (904), Expect = e-125
Identities = 101/203 (49%), Positives = 138/203 (67%), Gaps = 12/203 (5%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS + IKCV VGDG VGKTCMLI YT++ FP +Y+PTVFDN+SA VDG V+LGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY RLRPLSY D+F++ +S++S +S++NV KW PEL+ P+ PI+LVGTK+
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D+ L + + + QG++L +I A Y+ECS+ TQ+ ++ VFD A++ VL
Sbjct: 124 DLRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 181 RPEPVK--------RRQRKCVII 195
+P K R+ C I
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSIA 202
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 342 bits (879), Expect = e-122
Identities = 101/182 (55%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+ R IKCV VGDG VGKTC+LISYT+++FP +YVPTVFDN+SA V+G V+LGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY+RLRPLSY DVF++ +S++S +S++NV+ KW PELKH+ P PI+LVGTK+
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++ + P+ QG++L I A Y+ECS+ +Q ++ VFD A+R VL
Sbjct: 123 DLRDDKQF--FIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 181 RP 182
+P
Sbjct: 181 QP 182
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 342 bits (879), Expect = e-122
Identities = 103/187 (55%), Positives = 139/187 (74%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+ GR +KCV+VGDG VGKT +++SYTT+ +P EY+PT FDN+SA +VDG PV L L D
Sbjct: 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQ+++D+LRPL Y TD+FL+C+SVVSPSSF NV+ KW PE++ HCP APIILVGT+
Sbjct: 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLRED + L L + PV E + LA +I+A Y+ECSALTQ+ L++VFD A+ A +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194
Query: 181 RPEPVKR 187
+ ++
Sbjct: 195 QYSDTQQ 201
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 339 bits (872), Expect = e-121
Identities = 86/180 (47%), Positives = 112/180 (62%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K V+VGDG GKT +L+ + +FP Y PTVF+ Y V G PV L +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
+DYDRLRPL YP V L+C+ V SP+SFDN+ ++WYPE+ H C PII+VG K DLR+
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D+ +N L L PV +GQ++A + AV Y+ECSA + VF EA L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 338 bits (870), Expect = e-121
Identities = 79/183 (43%), Positives = 118/183 (64%), Gaps = 10/183 (5%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ +K VVVGDG VGKTC+L++++ P YVPTVF+N+S L LWDTAGQ
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
E+YDRLRPLSY +DV L+C++V + +SFDN+++KW PE+KH+ A +LVG K+DLR+
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D V +++G L K+ V Y+E S++ + GL +VF+++V + +P
Sbjct: 142 DGSD----------DVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191
Query: 185 VKR 187
V +
Sbjct: 192 VPK 194
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 338 bits (868), Expect = e-120
Identities = 99/181 (54%), Positives = 123/181 (67%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K VVVGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQED
Sbjct: 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDV L+C+SV SP S +N+ KW PE+KH CP+ PIILV K DLR D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
L+ PV+ + G+ +A +I+A Y+ECSA T+ G+R+VF+ A RA L+
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205
Query: 187 R 187
+
Sbjct: 206 Q 206
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 334 bits (859), Expect = e-119
Identities = 101/175 (57%), Positives = 127/175 (72%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQED
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR+D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PV+ E+G+ +AN+I A Y+ECSA T+ G+R+VF+ A RA L+
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 334 bits (859), Expect = e-119
Identities = 130/179 (72%), Positives = 157/179 (87%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
G+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDT
Sbjct: 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 85
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AGQEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+D
Sbjct: 86 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
LR+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 330 bits (848), Expect = e-117
Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 3/183 (1%)
Query: 1 MSSGRPI--KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGL 58
M + + K VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGT 118
WDT+G YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVR 177
K DLR D TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200
Query: 178 AVL 180
A +
Sbjct: 201 ACV 203
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 326 bits (838), Expect = e-116
Identities = 133/185 (71%), Positives = 161/185 (87%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
S + IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
GQEDYDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DL
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Query: 183 EPVKR 187
PVK+
Sbjct: 182 PPVKK 186
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 323 bits (830), Expect = e-115
Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L LWDT+G
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG K DLR D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVRAVL 180
TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A A +
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 322 bits (828), Expect = e-114
Identities = 112/178 (62%), Positives = 139/178 (78%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+KCVVVGDG VGKTC+L+SY D+FP EYVPTVFD+Y+ TV G LGL+DTAGQ
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYP TDVFLIC+SVV+P+SF NV +W PELK + P+ P +L+GT+IDLR+
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
D +TL L++ P+ EQGQKLA +I A Y+ECSALTQ+GL+ VFDEA+ A+L P
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 316 bits (810), Expect = e-111
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 2/188 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGD GKT ML D +P YVPTVF+NY+A + V L LWDT+G
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YD +RPL Y +D L+C+ + P + D+ KW E+ +CP ++L+G K DLR D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVLRPEPV 185
TL LS Q +P+ EQG +A ++ A Y+E SA T ++ + +F A L P
Sbjct: 148 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK-PS 206
Query: 186 KRRQRKCV 193
Q+ V
Sbjct: 207 PLPQKSPV 214
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 294 bits (754), Expect = e-101
Identities = 128/182 (70%), Positives = 156/182 (85%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
++ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAG EDYDRLRPLSYPQTDVFLIC+S+VSP+SF +V +KWYPE++HHCP+ PIILVGTK+
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
Query: 181 RP 182
P
Sbjct: 330 CP 331
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 171 bits (435), Expect = 2e-54
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M R K V++G VGKT + + F Y PTV + YS T+ L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGT 118
TAGQ++Y L +++ YSV S SF + Y +L H P++LVG
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K DL +RE V+ +G+KLA +ME SA + + +F + ++
Sbjct: 138 KADLSPERE------------VQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQE 184
Query: 179 VLRPEPVKRRQRKCVII 195
+ R E ++R+C ++
Sbjct: 185 IARVENSYGQERRCHLM 201
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 163 bits (414), Expect = 1e-51
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M + K ++G +VGK+ + I + F Y PT+ + ++ TV+G L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGT 118
TAGQ++Y + +++ YSV S SF+ + + +L PI+LVG
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K DL +R + E+G+ LA ++E SA + VF +
Sbjct: 120 KKDLHMERV------------ISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILE 166
Query: 179 VLRPEPVKRRQRK 191
+ + + +
Sbjct: 167 AEKMDGACSQGKS 179
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 159 bits (404), Expect = 7e-50
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 39/220 (17%)
Query: 1 MSSGRP--------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI 52
M++ +P K ++VG G VGK+ + + + D F +Y PT D+Y +DG
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPD 110
V + + DTAGQEDY +R + + FL +S+ SF + + ++ +
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDEN 119
Query: 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170
P +LVG K DL + R+ V E+ + A + V Y+E SA T+ + +
Sbjct: 120 VPFLLVGNKSDLEDKRQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDK 166
Query: 171 VFDEAVRAVLR---------------PEPVKRRQRKCVII 195
VF + +R + KR + +C I+
Sbjct: 167 VFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 157 bits (400), Expect = 1e-49
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ V G G VGK+ +++ + +F Y+PTV D Y + D +L + DT G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCPDAPIILVGTKID 121
+ ++ LS + F++ YS+ S S + + Y ++ K PI+LVG K D
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCD 120
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V+ + + LA + +ME SA ++++F E + R
Sbjct: 121 ESPSRE------------VQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKR 167
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 156 bits (398), Expect = 3e-49
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 15/179 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + F +Y PT+ D+Y VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDL 122
E + +R L F + YS+ + S+F+++ ++ D P+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++R V +EQGQ LA + ++E SA ++ + ++F + VR + R
Sbjct: 121 EDERV------------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 156 bits (396), Expect = 5e-49
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + T +F +Y PT+ D Y VD P L + DTAG
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDL 122
E + +R L F++ YS+V+ SF ++ ++ P+ILVG K+DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+RE V +G+ LA + +ME SA ++ + ++F E VR +
Sbjct: 121 ESERE------------VSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQM 164
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 156 bits (396), Expect = 9e-49
Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 26/199 (13%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ + ++K D P++LVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR---- 181
R V +Q Q LA + ++E SA T++G+ F VR + +
Sbjct: 124 RT------------VDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
Query: 182 -----PEPVKRRQRKCVII 195
+ K+ + KCVI+
Sbjct: 171 MSKDGKKKKKKSKTKCVIM 189
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 155 bits (394), Expect = 1e-48
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVG G VGK+ + I + F +Y PT+ D+Y+ +VDGIP L + DTAGQ
Sbjct: 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 67
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDL 122
E++ +R FL+ +++ SF+ V K + ++ D P++LVG K DL
Sbjct: 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADL 126
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R+ V R + V Y E SA + + + F++ VRAV +
Sbjct: 127 ESQRQ------------VPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRKY 173
Query: 183 EPVKR 187
+ +
Sbjct: 174 QEQEL 178
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 155 bits (395), Expect = 1e-48
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 32/208 (15%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ VV G G VGK+ +++ + +F Y+PT+ D Y + D +L + DT G
Sbjct: 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGS 66
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCPDAPIILVGTKID 121
+ ++ LS + F++ +SV S S + + Y + K D P++LVG K D
Sbjct: 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCD 125
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V + Q +A + + +ME SA ++++F E + R
Sbjct: 126 E-TQRE------------VDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLETR 171
Query: 182 --------------PEPVKRRQRKCVII 195
+ R + KC ++
Sbjct: 172 RNMSLNIDGKRSGKQKRTDRVKGKCTLM 199
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 155 bits (394), Expect = 2e-48
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M+ +K + G VGK+ +++ + T F EY PT+ Y T+D VS+ + D
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGT 118
TAGQED R + F++ Y + SF+ V L + +ILVG
Sbjct: 83 TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG-LRQVFDEAVR 177
K DL R+ V E+G+KLA ++ + ECSA T G + ++F E R
Sbjct: 141 KADLDHSRQ------------VSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCR 187
Query: 178 AVLRPEPVK 186
V R V+
Sbjct: 188 EVRRRRMVQ 196
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 153 bits (389), Expect = 9e-48
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + + FL +S+ SF + + ++ + P +LVG K DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ + A + V Y+E SA T+ + +VF + +R +
Sbjct: 139 RQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIRA 181
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 153 bits (389), Expect = 1e-47
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 1 MSSGRP---------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDG 51
SSGR K VVVG G VGK+ + I + F EY PT+ D+Y +DG
Sbjct: 7 HSSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG 66
Query: 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CP 109
L + DTAGQE+Y +R + FL +++ + SF ++ + + ++K
Sbjct: 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSD 125
Query: 110 DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLR 169
D P++LVG K DL R V +Q +LA + ++E SA T++G+
Sbjct: 126 DVPMVLVGNKCDL-PTRT------------VDTKQAHELAKSYG-IPFIETSAKTRQGVE 171
Query: 170 QVFDEAVRAVLR 181
F VR + +
Sbjct: 172 DAFYTLVREIRQ 183
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 152 bits (386), Expect = 1e-47
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG G VGK+ + I + F E PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-AA 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V+ Q Q LA + Y+E SA T++G+ F VR + +
Sbjct: 123 RT------------VESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 152 bits (386), Expect = 1e-47
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + + FL +S+ SF + + ++ + P +LVG K DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ + A++ V Y+E SA T+ + +VF + +R +
Sbjct: 125 RQ------------VSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREIRA 167
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 151 bits (385), Expect = 3e-47
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVGDG VGK+ + I + F +Y PT+ D+Y +D L + DTAGQ
Sbjct: 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDL 122
E++ +R D FLI YSV +SF++V +++ + P+ILV K+DL
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDL 135
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR-GLRQVFDEAVRAVLR 181
R+ V R+QG+++A K + Y+E SA + + F + VR + +
Sbjct: 136 MHLRK------------VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 150 bits (382), Expect = 1e-46
Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 20/185 (10%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
+ ++G GK+ + + + T F EY P + D YS+ TVD PV L + DT
Sbjct: 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVG 117
A + R FL+ YSV S SFD+ S + L H P +L+G
Sbjct: 77 ADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLG 134
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR-GLRQVFDEAV 176
K+D+ + R+ V + +G LA + + E SA ++ VF EAV
Sbjct: 135 NKLDMAQYRQ------------VTKAEGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAV 181
Query: 177 RAVLR 181
R R
Sbjct: 182 REARR 186
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 151 bits (383), Expect = 1e-46
Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQED 66
K ++VG+ VGK+ + ++ + P D Y VD V+L ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 67 YD-RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLR 123
LR D FLI +SV SF V + L+ D P+ILVG K DL
Sbjct: 85 AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
RE V E+G+ LA + K++E SA R++F+ AVR +
Sbjct: 144 RSRE------------VSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL-- 188
Query: 184 PVKRRQRK 191
RR R
Sbjct: 189 ---RRGRN 193
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 148 bits (377), Expect = 3e-46
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K +++G VGK+ + + G Y VDG SL ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
L D ++I YSV SF+ S+ +L+ D PIILVG K DL
Sbjct: 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V ++G+ A K++E SA ++ +F+ VR +
Sbjct: 122 RE------------VSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL 164
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 147 bits (374), Expect = 1e-45
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQED 66
K ++VG+ VGK+ + ++ + D Y VD V+L ++D Q D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 67 YD-RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLR 123
L+ D FLI +SV SF V + L+ D P+ILVG K DL
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V E+G+ LA + K++E SA R++F+ AVR +
Sbjct: 123 RSRE------------VSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL 167
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 146 bits (372), Expect = 2e-45
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ V++GD VGKT + + + D Y TVDG +L + DT
Sbjct: 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 65 EDYDR--LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKI 120
E D+ + ++I YS+ SF++ S+ +L+ H PIILVG K
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL RE V E+G+ A K++E SA Q + ++F+ VR
Sbjct: 122 DLARCRE------------VSVEEGRACAVVFD-CKFIETSATLQHNVAELFEGVVRQ-- 166
Query: 181 RPEPVKRRQRK 191
++ R+R
Sbjct: 167 ----LRLRRRD 173
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 145 bits (368), Expect = 1e-44
Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 1 MSSGRP--------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI 52
SSGR +K +VG+ + GK+ ++ Y T ++ E P + VDG
Sbjct: 7 HSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQ 65
Query: 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPD 110
L + D G + D + +S+ SF V ++ L +
Sbjct: 66 SYLLLIRDEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASE 119
Query: 111 APIILVGTKIDLRE--DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168
P++LVGT+ + R + + +KL+ ++ Y E A +
Sbjct: 120 VPMVLVGTQDAISAANPRV------------IDDSRARKLSTDLKRCTYYETCATYGLNV 167
Query: 169 RQVFDEAVRAVLRPE 183
+VF + + V+
Sbjct: 168 ERVFQDVAQKVVALR 182
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 143 bits (362), Expect = 2e-43
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTT--DSFPGEYVPTVFDNYSAPFTVDGIPVSLGL- 58
S + V++G+ VGK+ + + DS + D Y VDG ++ L
Sbjct: 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 59 --WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPII 114
W+ G+ ++ L D +LI YS+ +SF+ S+ +L+ D PII
Sbjct: 93 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 149
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
LVG K DL RE V +G+ A K++E SA Q ++++F+
Sbjct: 150 LVGNKSDLVRCRE------------VSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEG 196
Query: 175 AVRAVLRPEPVKRR 188
VR V K +
Sbjct: 197 IVRQVRLRRDSKEK 210
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 140 bits (354), Expect = 4e-42
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKT + + T F +YV T+ + + F + P+ +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ LR Y Q +I + V S ++ NV W+ +L C + PI+L G K+D+++ +
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ K + ++Y + SA + + F R ++
Sbjct: 136 VK--------------AKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLIG 175
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 136 bits (345), Expect = 2e-41
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
IK VVVG+G VGK+ M+ Y F +Y T+ D V+ V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
++D + Y ++ +S SF+ + S W ++ D P LV KIDL +D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+K E+ + LA ++ +++ S + +VF L+
Sbjct: 125 SC------------IKNEEAEGLAKRL-KLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 134 bits (340), Expect = 2e-40
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+ +L+ + ++F G Y+ T+ D ++G V L +WDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
R R ++ Y T ++ Y V S SF NV +W E+ +C D ILVG K D
Sbjct: 70 ---RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDD 125
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E + V+ E K A + ++ E SA + ++F+ VLR
Sbjct: 126 PERKV------------VETEDAYKFAGQ-MGIQLFETSAKENVNVEEMFNCITELVLR 171
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 134 bits (339), Expect = 3e-40
Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 25/190 (13%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M S ++ V+GD GK+ ++ + T S+ T + Y VDG + + +
Sbjct: 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIRE 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH----CPDAPIILV 116
AG D D + +S+ +SF V S+ + +L + LV
Sbjct: 61 EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALV 114
Query: 117 GT--KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
GT +I R V + + L ++ Y E A + +VF E
Sbjct: 115 GTQDRISASSPRV------------VGDARARALXADMKRCSYYETXATYGLNVDRVFQE 162
Query: 175 AVRAVLRPEP 184
+ V+
Sbjct: 163 VAQKVVTLRK 172
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 134 bits (340), Expect = 3e-40
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 23/191 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEY--VPTVFDNYSAPFTVDGIPVSLGL---WDTA 62
+ V++G+ VGK+ + + + D Y VDG ++ L W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKI 120
G+ ++ L D +LI YS+ +SF+ S+ +L+ D PIILVG K
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL RE V +G+ A K++E SA Q ++++F+ VR V
Sbjct: 125 DLVRXRE------------VSVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 181 RPEPVKRRQRK 191
K + +
Sbjct: 172 LRRDSKEKNER 182
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 133 bits (338), Expect = 9e-40
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 17/177 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPT--VFDNYSAPFTVDGIPVSLGLWDTAGQE 65
K ++GDG VGKT + F Y T ++ G + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
L+ + Y ++ + V S + N+ ++W E + +API++ KID++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++ + ++ ++ + +Y E SA T F R
Sbjct: 132 RQK------------ISKKLVMEVLKG-KNYEYFEISAKTAHNFGLPFLHLARIFTG 175
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 133 bits (336), Expect = 1e-39
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
++ +++G VGKT ++ +T D+F TV F + + G + L +WDTAG
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKT--VELRGKKIRLQIWDTAG 84
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R ++ Y ++ Y + +FD++ KW + + DA ++LVG K
Sbjct: 85 QE---RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNK 140
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+D DRE + R+QG+K A +I +++ E SA + ++F + V +
Sbjct: 141 LDCETDRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
Query: 180 LR 181
L+
Sbjct: 189 LK 190
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 131 bits (331), Expect = 8e-39
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGD +VGKTC++ + T +F T+ D + G V L +WDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKID 121
R R ++ Y + ++ Y + SSF +V W +++ + + +L+G K D
Sbjct: 90 ---RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L E RE V + Q LA + +E SA + + F ++
Sbjct: 146 LSELRE------------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 129 bits (326), Expect = 3e-38
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++G+ +VGKT L Y DSF +V TV D + L +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121
R R ++ Y FL+ Y + + SF V W ++K + +A +ILVG K D
Sbjct: 83 ---RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCD 138
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L ++R V E G++LA+ + ++ E SA ++QVF+ V +
Sbjct: 139 LEDERV------------VPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICE 185
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 128 bits (325), Expect = 4e-38
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K +++GD VGKTC+L ++ D+F ++ T+ F + +DG + L +WDTAG
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRT--IELDGKRIKLQIWDTAG 66
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R R ++ Y ++ Y + + SFDN+ W ++ H D +++G K
Sbjct: 67 QE---RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNK 122
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ + R+ V +E+G+KLA +K+ME SA + F R +
Sbjct: 123 CDVNDKRQ------------VSKERGEKLALD-YGIKFMETSAKANINVENAFFTLARDI 169
Query: 180 LR 181
Sbjct: 170 KA 171
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 127 bits (322), Expect = 8e-38
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GDG VGK+ ++ Y T+ F + T+ + + VDG V++ +WDTAGQE
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKID 121
+ LR Y +D L+ +SV SF N+ S W E ++ P +++G KID
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ +R+ V E+ Q Y E SA + F+EAVR VL
Sbjct: 128 I-SERQ------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 127 bits (322), Expect = 1e-37
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 1 MSSGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGI-PV 54
MSS + +K +++GD VGKT ++ Y D + +Y T+ F TVDG
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKE--VTVDGDKVA 58
Query: 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----P 109
++ +WDTAGQE + L Y D ++ Y V + SSF+N+ W E H
Sbjct: 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPE 117
Query: 110 DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLR 169
P +++G KID E ++ V + Q+LA + + SA +
Sbjct: 118 TFPFVILGNKIDAEESKKI-----------VSEKSAQELAKSLGDIPLFLTSAKNAINVD 166
Query: 170 QVFDEAVRAVLR 181
F+E R+ L+
Sbjct: 167 TAFEEIARSALQ 178
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 127 bits (322), Expect = 1e-37
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ +T F + T+ + + +DG + L +WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y L+ Y + +F+++ + W + + H + I+L+G K DL
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ VKRE+G+ A + + +ME SA T + + F + + R
Sbjct: 141 RRD------------VKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYR 184
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 127 bits (321), Expect = 1e-37
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L +T F + T+ + + V G + L +WDTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRED 125
+ + Y L+ Y + S+++++ S W + ++ P+ IIL+G K DL
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ ++ A + + ++E SA T + F EA + + +
Sbjct: 136 RD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 127 bits (322), Expect = 1e-37
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ D +DG + L +WDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y ++ Y V SF+NV +W E+ + + +LVG K DL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ V ++ A+ + + ++E SA + Q F + +
Sbjct: 153 KKV------------VDYTTAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKK 196
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 127 bits (322), Expect = 1e-37
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGKTC++ +T FP T+ D ++G V L +WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y + ++ Y + SF + +W E++ + +LVG KIDL E
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V +++ ++ + + + Y+E SA + ++F + ++
Sbjct: 146 RRE------------VSQQRAEEFSEA-QDMYYLETSAKESDNVEKLFLDLACRLIS 189
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 127 bits (322), Expect = 1e-37
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 33/191 (17%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-----------FDNYSAPFTVDGIPVS 55
IK + +GD VGKT +L YT F +++ TV N G +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 56 LGLWDTAGQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPD 110
L LWDTAG E R R L+ + FL+ + + + SF NV W +L+ H +
Sbjct: 72 LQLWDTAGLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSEN 127
Query: 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170
I+L G K DL + R VK E+ ++LA K + Y E SA +
Sbjct: 128 PDIVLCGNKSDLEDQRA------------VKEEEARELAEKYG-IPYFETSAANGTNISH 174
Query: 171 VFDEAVRAVLR 181
+ + +++
Sbjct: 175 AIEMLLDLIMK 185
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 127 bits (322), Expect = 2e-37
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 18/178 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++G+ VGK+ +L+ +T D+F E T+ D +VDG L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLR 123
+ L P Y ++ Y V +F + W EL+ +C D +LVG KID
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E+RE V R +G K A K + ++E SA T G++ F+E V +++
Sbjct: 134 ENRE------------VDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQ 178
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 127 bits (321), Expect = 2e-37
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 26/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K +++G+ +VGKT L Y D+F +V TV F + V L +WDTAG
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKT--VYRHEKRVKLQIWDTAG 81
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTK 119
QE R R ++ Y F++ Y + + SF+ V W ++K + +A +ILVG K
Sbjct: 82 QE---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNK 137
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ E+R V E+GQ LA ++ + E SA +RQ F+ V A+
Sbjct: 138 CDMEEERV------------VPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAI 184
Query: 180 LR 181
Sbjct: 185 CD 186
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 127 bits (322), Expect = 2e-37
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 33/191 (17%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---F--------DNYSAPFTVDGIPVS 55
IK + +GD VGKT L YT + F +++ TV F + V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 56 LGLWDTAGQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPD 110
L LWDTAGQE R R L+ + FL+ + + S SF NV W +L+ + C +
Sbjct: 86 LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141
Query: 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170
I+L+G K DL + RE V Q ++LA+K + Y E SA T + + +
Sbjct: 142 PDIVLIGNKADLPDQRE------------VNERQARELADKYG-IPYFETSAATGQNVEK 188
Query: 171 VFDEAVRAVLR 181
+ + +++
Sbjct: 189 AVETLLDLIMK 199
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 126 bits (320), Expect = 2e-37
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGKT +L +T + F + T+ + + + V +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y + Y L+ + + ++ V +W EL H ++LVG K DL +
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V E+ + A + ++E SAL + F+ ++ +
Sbjct: 145 ARE------------VPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFA 188
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 126 bits (319), Expect = 3e-37
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +V+G+ GK+C+L + F + T+ + S V G V L +WDTAGQE
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE- 70
Query: 67 YDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
R R ++ Y L+ Y + S +++ + + W + + + IIL G K DL
Sbjct: 71 --RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDL 127
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
DRE V + + A + + ++E SALT + + F + R +L
Sbjct: 128 DADRE------------VTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCARKILN 173
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 126 bits (320), Expect = 3e-37
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++G+ +VGKT L Y DSF +V TV D + + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121
R R ++ Y F++ Y + + SF+ V W ++K + +A ++LVG K D
Sbjct: 69 ---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ ++R V E+G++LA+ + ++ E SA ++Q F+ V +
Sbjct: 125 MEDERV------------VSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICE 171
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 126 bits (319), Expect = 4e-37
Identities = 51/180 (28%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+ GD VGK+ L+ + F T+ D VDG L LWDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKID 121
R R ++ + + D L+ Y V SF N+ +W ++ PI+LVG K D
Sbjct: 89 ---RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKAD 144
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+R+ + V G+KLA + E SA + + R V +
Sbjct: 145 IRDTAA------TEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVKK 197
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 127 bits (320), Expect = 4e-37
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V +G+ +VGKT ++ + DSF Y T+ D S ++ V L LWDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ L P + V ++ Y + + +SF T KW +++ D I+LVG K DL +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
R+ V E+G++ A ++ V ++E SA ++Q+F A+ E
Sbjct: 136 KRQ------------VSIEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 185 VKRRQRK 191
+ R R+
Sbjct: 183 TQDRSRE 189
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 125 bits (316), Expect = 5e-37
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
+K +++GD VGK+C+L+ + D F ++ T+ F + ++G V L +WDTAG
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQIWDTAG 61
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R R ++ Y ++ Y + +F N+ +W+ + H +A ++LVG K
Sbjct: 62 QE---RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 117
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ E R V +QG+ LA + + ++E SA + ++F + +
Sbjct: 118 SDM-ETRV------------VTADQGEALAKE-LGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 180 LR 181
Sbjct: 164 QE 165
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 125 bits (316), Expect = 6e-37
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 27/183 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTA 62
K ++VGD VGKTC+L+ + +F G ++ TV F N VDG+ V L +WDTA
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKV--LDVDGVKVKLQMWDTA 68
Query: 63 GQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGT 118
GQE R R ++ Y L+ Y V + +SFDN+ W E+ + D ++L+G
Sbjct: 69 GQE---RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGN 124
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K+D +R VKRE G+KLA + + +ME SA T + F +
Sbjct: 125 KVDSAHERV------------VKREDGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKE 171
Query: 179 VLR 181
+ R
Sbjct: 172 LKR 174
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 125 bits (316), Expect = 7e-37
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 1 MSSGRP------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIP 53
MSSG K V +G+ +VGKT ++ + DSF Y T+ D S ++
Sbjct: 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62
Query: 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAP 112
V L LWDTAGQE + L P + V ++ Y + + +SF + KW +++ D
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVI 121
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
I+LVG K DL + R+ V E+G++ A ++ V ++E SA ++Q+F
Sbjct: 122 IMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168
Query: 173 DEAVRA 178
A
Sbjct: 169 RRVAAA 174
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 125 bits (317), Expect = 9e-37
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ D +DG + L +WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y ++ Y V SF+NV +W E+ + + +LVG K DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ V ++ A+ + + ++E SA + Q F + +
Sbjct: 136 KKV------------VDYTTAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKK 179
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 124 bits (314), Expect = 1e-36
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 20/181 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDG-IPVSLGLWDTAGQ 64
+K VV+GDG GKT + + ++F +Y T+ D + T+ G + V+L +WD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK----HHCPDAPIILVGTKI 120
++ L+ Y + + SF+N+ WY +K + LVG KI
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL R +K E+ + + SA T + F + +L
Sbjct: 126 DLEHMRT------------IKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEIL 172
Query: 181 R 181
Sbjct: 173 G 173
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 125 bits (316), Expect = 1e-36
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +V+G GK+C+L + + F + T+ + S V G V L +WDTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRED 125
+ + Y L+ Y + S +++++ + W + + P+ +IL G K DL +
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V + + A + + ++E SALT + + F + R +L
Sbjct: 146 RE------------VTFLEASRFAQE-NELMFLETSALTGENVEEAFLKCARTILN 188
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 124 bits (313), Expect = 1e-36
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+G VGKT +++ Y + F +++ T+ + + G V+L +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ L P+ Y ++ ++ Y + SF V W EL+ + + +VG KIDL +
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+R V ++ + A + K+ SA +G+ ++F + + ++
Sbjct: 126 ERH------------VSIQEAESYAESV-GAKHYHTSAKQNKGIEELFLDLCKRMI 168
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 125 bits (315), Expect = 2e-36
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 26/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K +++G+ VGK+C+L+ ++ D++ +Y+ T+ F + +DG V L +WDTAG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKT--VELDGKTVKLQIWDTAG 66
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R R ++ Y + +I Y V SF+ V W E+ + +LVG K
Sbjct: 67 QE---RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNK 122
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL++ R V+ + ++ A+ + ++E SAL + F R +
Sbjct: 123 CDLKDKRV------------VEYDVAKEFADA-NKMPFLETSALDSTNVEDAFLTMARQI 169
Query: 180 LR 181
Sbjct: 170 KE 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 125 bits (315), Expect = 2e-36
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++GD VGK+ +L +T + F E T+ + + VDG + +WDTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE- 65
Query: 67 YDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDL 122
R R ++ Y L+ Y + +++NV +W EL+ H + I+LVG K DL
Sbjct: 66 --RYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R R V ++ + A K + ++E SAL + + F + + R
Sbjct: 123 RHLRA------------VPTDEARAFAEK-NNLSFIETSALDSTNVEEAFKNILTEIYR 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 124 bits (313), Expect = 3e-36
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++GD VGK+ +L +T + F E T+ + + VDG + +WDTAG E
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE- 89
Query: 67 YDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
R R ++ Y L+ Y + +++NV +W EL+ H + I+LVG K DL
Sbjct: 90 --RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 146
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R R V ++ + A K + ++E SAL + F + +
Sbjct: 147 RHLRA------------VPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 190
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 123 bits (311), Expect = 5e-36
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K ++GD VGK+ ++ + D F PT+ + +WDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLRE 124
+ L P+ Y + +I Y + SF + KW ELK H + + + G K DL +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
RE V + ++ A I +E SA + ++F R + +P
Sbjct: 143 IRE------------VPLKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIPPLDP 189
Query: 185 VK 186
+
Sbjct: 190 HE 191
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 123 bits (310), Expect = 6e-36
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 16/182 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++GD GK+ +++ + D F T+ +S V+ V +WDTAGQE
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y +I + V + +SF+ KW EL+ P+ + L G K DL +
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
R+ V E Q A + + +ME SA T ++++F E R + R +P
Sbjct: 132 ARK------------VTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQP 178
Query: 185 VK 186
+
Sbjct: 179 TE 180
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 124 bits (313), Expect = 6e-36
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 1 MSSGRP-------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGI 52
MSS K V++GD VGK+ +L +T + F + T+ + + ++G
Sbjct: 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 53 PVSLGLWDTAGQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC- 108
+ +WDTAGQE R R ++ Y LI Y + SS++N + W EL+ +
Sbjct: 61 RIKAQIWDTAGQE---RYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENAD 116
Query: 109 PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168
+ + L+G K DL R V E+ + A + + + E SAL +
Sbjct: 117 DNVAVGLIGNKSDLAHLRA------------VPTEESKTFAQE-NQLLFTETSALNSENV 163
Query: 169 RQVFDEAVRAVLR 181
+ F+E + + +
Sbjct: 164 DKAFEELINTIYQ 176
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 123 bits (311), Expect = 8e-36
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
+K +++GD VGK+C+L+ + D F ++ T+ F + ++G V L LWDTAG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQLWDTAG 78
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
QE + + Y ++ Y V +F N+ +W+ + H +A ++LVG K D+
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E R V +QG+ LA ++ + ++E SA + ++F + +
Sbjct: 138 -ETRV------------VTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQE 182
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 122 bits (308), Expect = 1e-35
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++G+ VGK+ +++ + F T+ + +D V +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLRED 125
Y L P+ Y ++ Y + + SF W EL+ P+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V ++ Q A+ + +ME SA T + ++F + + +
Sbjct: 127 RA------------VDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLPK 169
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 121 bits (307), Expect = 1e-35
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 24/186 (12%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPF-----TVDGIPVSL 56
S+ R +K ++GD VGK+ ++ + DSF PT+ A F
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI----GASFMTKTVQYQNELHKF 57
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIIL 115
+WDTAG E + L P+ Y + +I Y + +F + W EL+ H P + +
Sbjct: 58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAI 116
Query: 116 VGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEA 175
G K DL + RE V + A+ I ++E SA + ++F E
Sbjct: 117 AGNKCDLTDVRE------------VMERDAKDYADSIH-AIFVETSAKNAININELFIEI 163
Query: 176 VRAVLR 181
R +
Sbjct: 164 SRRIPS 169
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 118 bits (299), Expect = 3e-34
Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 27/183 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +V+GD VGKTC+ + FP T+ D +DG + + LWDTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 66 DYDRLRPLS-----YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGT 118
R R S Y + Y + + +SF ++ W E K H D P ILVG
Sbjct: 81 ---RFRK-SMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGN 135
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K DLR + V + QK A+ ++ E SA V +
Sbjct: 136 KCDLRSAIQ------------VPTDLAQKFADT-HSMPLFETSAKNPNDNDHV-EAIFMT 181
Query: 179 VLR 181
+
Sbjct: 182 LAH 184
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 118 bits (299), Expect = 6e-34
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 22/192 (11%)
Query: 1 MSSGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
M+S + +K +++GD VGKT ++ Y F +Y T+ D + VD V++
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----PDAP 112
+WDTAGQE + L Y D ++ + V +P++F + W E + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+++G KIDL E+R+ V ++ Q + Y E SA + Q F
Sbjct: 120 FVVLGNKIDL-ENRQ------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Query: 173 DEAVRAVLRPEP 184
R L+ E
Sbjct: 167 QTIARNALKQET 178
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 117 bits (296), Expect = 8e-34
Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 19/184 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTV-FDNYSAPFTVDG---IPVSLGLWD 60
+K ++VG+ GKT +L G TV D P + + L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
AG+E++ P Q ++L Y + + + W +K +P+ILVGT +
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKI----RAVKYMECSALTQRGLRQVFDEAV 176
D+ ++++ + ++L NK + + L ++ +
Sbjct: 123 DVSDEKQ---------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173
Query: 177 RAVL 180
L
Sbjct: 174 NESL 177
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 114 bits (288), Expect = 2e-32
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 23/184 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYT--TDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLW--DTA 62
K VVG+ TVGK+ ++ +T F +Y T + AP T+ VS+ L+ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA----PIILVGT 118
G + Y + ++ + V S SF++ W+ LK PD +LV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVAN 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA-LTQRGLRQVFDEAVR 177
K DL R V+ + Q A + + + SA + F
Sbjct: 141 KTDLPPQRHQ-----------VRLDMAQDWATT-NTLDFFDVSANPPGKDADAPFLSIAT 188
Query: 178 AVLR 181
R
Sbjct: 189 TFYR 192
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 120 bits (301), Expect = 5e-32
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 26/192 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS---------APFTVDGIPVSLG 57
IK ++GDG GKT +L ++F + T N +
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
WD GQE ++ V+++ + N W ++ + +P+I+V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVVM 157
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
KID +++++ + I ++ S G+ +
Sbjct: 158 NKIDENPSYN------------IEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKS 204
Query: 178 AVLRPEPVKRRQ 189
AVL P+ +
Sbjct: 205 AVLHPDSIYGTP 216
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 107 bits (270), Expect = 1e-29
Identities = 42/219 (19%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV--------------------- 39
M K V++G+ +VGK+ +++ T D+F T+
Sbjct: 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 40 -----------------FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82
N + + + +WDTAGQE Y + PL Y +
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
Query: 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142
+ + + + ++ D W +LK + IILV KID + V
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-NKFQ------------VDI 166
Query: 143 EQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ QK A + +++ SA T ++ +F + +
Sbjct: 167 LEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 102 bits (255), Expect = 7e-28
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
IK V++G+ VGK+ +++ + ++ F PT+ + T++ V +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ L P Y L+ Y V P SF W EL D I LVG KID +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ V RE+G+KLA + + + + E SA T + VF +
Sbjct: 123 E---------GGERKVAREEGEKLAEE-KGLLFFETSAKTGENVNDVFLGIGEKIPL 169
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 74.7 bits (183), Expect = 1e-16
Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 25/163 (15%)
Query: 29 DSFPGEYVPTVFDNYSAPFTVDGIPVSLGL----WDTAGQEDY--DRLRPLSYPQTDVFL 82
D + T Y + + L D G E + P D FL
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167
Query: 83 ICYSV--VSPSSFDNVTSKWYPELKHHCPDA--PIILVGTKIDLREDRETLNLLSEQNLS 138
+ V +FD+ K+ L + PI++V TK D +R
Sbjct: 168 LGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------- 215
Query: 139 PVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++ L+ K ++ +E SA + + F V+ + +
Sbjct: 216 -IRDAHTFALSKK--NLQVVETSARSNVNVDLAFSTLVQLIDK 255
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 60.5 bits (147), Expect = 8e-12
Identities = 40/199 (20%), Positives = 58/199 (29%), Gaps = 45/199 (22%)
Query: 7 IKCVVVGDGTVGKTCML----------ISYTTDSFPGEYVPTVFDNYSAPF--TVDGIPV 54
K V G G GKT L S E T+F ++ V G
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 55 SLGLWDTAGQEDYDRLRPLSYPQTD--VFLI----CYSVVSPSSFDNVTSKWYPELKHHC 108
L+ GQ Y+ R L D VF+ + S N+ + E
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTL 133
Query: 109 PDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162
D PI++ K DL R ++ + +E A
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK--------------------FPVLEAVA 173
Query: 163 LTQRGLRQVFDEAVRAVLR 181
+G+ + E R VL
Sbjct: 174 TEGKGVFETLKEVSRLVLA 192
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 51.1 bits (122), Expect = 4e-08
Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP-VSLGLWDTAG 63
K +++G GK+ M ++ + T+ +S + + ++L LWD G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS---HLRFLGNMTLNLWDCGG 61
Query: 64 QEDY-----DRLRPLSYPQTDVFLICYSVVSPSSFDNVT--SKWYPELKHHCPDAPIILV 116
Q+ + + + + V + + V S ++ +K +L+ + PDA I ++
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121
Query: 117 GTKIDLREDRETLNLLSEQN 136
K+DL + + L
Sbjct: 122 LHKMDLVQLDKREELFQIMM 141
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 44.2 bits (104), Expect = 6e-06
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 15/126 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGE---YVPTV-FDNYSAPFTVDGIPVSLGLWDTA 62
+ +++G GK+ + P E T + V+ +WD
Sbjct: 21 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFP 77
Query: 63 GQEDYDRL---RPLSYPQTDVFLICYSVVSPSSFDNVTSK---WYPELKHHCPDAPIILV 116
GQ D+ + + T + Y + + + ++ + PD +
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGA--LIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135
Query: 117 GTKIDL 122
K+D
Sbjct: 136 IHKVDG 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-05
Identities = 37/269 (13%), Positives = 65/269 (24%), Gaps = 115/269 (42%)
Query: 5 RPIKCVVV-GDGTVGKTCMLISYTTDS-----FPGEYVPTVF------------------ 40
RP K V++ G GKT + + + +F
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETVLEMLQ 203
Query: 41 -------DNYSA-PFTVDGIPVSLGLWDTAGQEDYDRLRPL----SYPQTDVFLICYSVV 88
N+++ I + + LR L Y C V+
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRI-------HSIQAELRRLLKSKPYEN------CLLVL 250
Query: 89 SPSSFDNVTSKWYPE----LKHHCPDAPIILVGTK----IDLR----------------- 123
NV + C IL+ T+ D
Sbjct: 251 -----LNV---QNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 124 EDRETLNLLS------EQNLSPVKREQGQKLA------------NKIRAVKYMECSALTQ 165
E +LL Q+L P + K++ C LT
Sbjct: 299 TPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT- 356
Query: 166 RGLRQVFDEAVRAVLRPEPVKRRQRKCVI 194
+ + ++ VL P ++ + +
Sbjct: 357 ----TIIESSL-NVLEPAEYRKMFDRLSV 380
Score = 33.7 bits (76), Expect = 0.032
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 31/124 (25%)
Query: 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR- 142
C V ++ SK E+ H ++ +K + L + V++
Sbjct: 35 CKDV--QDMPKSILSK--EEIDH--------IIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 143 -EQGQK-----LANKIRA---------VKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
E+ + L + I+ Y+E QVF + V R +P +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAK--YNVSRLQPYLK 139
Query: 188 RQRK 191
++
Sbjct: 140 LRQA 143
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 41.4 bits (98), Expect = 4e-05
Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 48/190 (25%)
Query: 5 RPIKCVVVG-DGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP---VSLGLWD 60
+ K + +G D GKT +L D PT T + + + +D
Sbjct: 22 KHGKLLFLGLDNA-GKTTLLHMLKNDRL-ATLQPTWH------PTSEELAIGNIKFTTFD 73
Query: 61 TAGQEDYDRLRPL---SYPQTD--VFLICYSV------VSPSSFDNVTSKWYPELKHHCP 109
G + R L +P+ + VFL+ + + D + + ELK
Sbjct: 74 LGGH---IQARRLWKDYFPEVNGIVFLV-DAADPERFDEARVELDALFNI--AELK---- 123
Query: 110 DAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163
D P +++G KID E R L LL+ ++ + R V+ CS +
Sbjct: 124 DVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ---------RPVEVFMCSVV 174
Query: 164 TQRGLRQVFD 173
+ G + F
Sbjct: 175 MRNGYLEAFQ 184
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 40.3 bits (95), Expect = 1e-04
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 5 RPIKCVVVG-DGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
+ K V +G D GKT +L D G++VPT+ S T+ G+ + +D G
Sbjct: 24 KTGKLVFLGLDNA-GKTTLLHMLKDDRL-GQHVPTLHPT-SEELTIAGM--TFTTFDLGG 78
Query: 64 QEDYDRLRPL---SYPQTD--VFLICYS------VVSPSSFDNVTSKWYPELKHHCPDAP 112
+ R + P + VFL+ + S D++ + + + P
Sbjct: 79 H---IQARRVWKNYLPAINGIVFLV-DCADHERLLESKEELDSLMTD--ETIA----NVP 128
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQ 170
I+++G KID E L L +G ++ R ++ CS L ++G +
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188
Query: 171 VFD 173
F
Sbjct: 189 GFR 191
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 39.9 bits (94), Expect = 1e-04
Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 59/194 (30%)
Query: 5 RPIKCVVVG-DGTVGKTCMLISY---TTDSFPGEYVPTVFDNYSAPFTVDGIP---VSLG 57
+ + + +G D + GKT ++ +++ +PT+ F+++ +S
Sbjct: 20 KEVHVLCLGLDNS-GKTTII--NKLKPSNAQSQNILPTI------GFSIEKFKSSSLSFT 70
Query: 58 LWDTAGQEDYDRLRPL---SYPQTDVFLICYSV---------VSPSSFDNVTSKWYPELK 105
++D +GQ R R L Y + I + + V+ D + + P++K
Sbjct: 71 VFDMSGQ---GRYRNLWEHYYKEGQA--IIFVIDSSDRLRMVVAKEELDTLLNH--PDIK 123
Query: 106 HHCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159
H PI+ K+DLR + + L L + ++ +
Sbjct: 124 HR--RIPILFFANKMDLRDAVTSVKVSQLLCLENIKD----------------KPWHICA 165
Query: 160 CSALTQRGLRQVFD 173
A+ GL++ D
Sbjct: 166 SDAIKGEGLQEGVD 179
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 37.9 bits (89), Expect = 7e-04
Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 54/177 (30%)
Query: 18 GKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP---VSLGLWDTAGQEDYDRLRPL- 73
GKT + + F + +PTV F + I V++ LWD GQ R R +
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTV------GFNMRKITKGNVTIKLWDIGGQ---PRFRSMW 84
Query: 74 --SYPQTDVFLICYSV---------VSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
I Y V S + N+ K P+L+ P++++G K DL
Sbjct: 85 ERYCRGVSA--IVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
Query: 123 R------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
E E +NL + Q+ R + S + +
Sbjct: 137 PGALDEKELIEKMNLSAIQD----------------REICCYSISCKEKDNIDITLQ 177
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 37.1 bits (86), Expect = 0.002
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 103 ELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162
E+ D P ++V KID + E+N+ +++ K + + ++ SA
Sbjct: 273 EVHGEFKDLPFLVVINKID---------VADEENIKRLEKF------VKEKGLNPIKISA 317
Query: 163 LTQRGLRQVFDEAVRAVLRPEPVKRRQRK 191
L G+ V +E ++ LRP K + K
Sbjct: 318 LKGTGIDLVKEEIIKT-LRPLAEKVAREK 345
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 36.5 bits (85), Expect = 0.002
Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 63/194 (32%)
Query: 5 RPIKCVVVG-DGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP---VSLG 57
R I+ +++G D GKT +L G+ V PTV ++ + +S
Sbjct: 21 RKIRVLMLGLDN-AGKTSILYRLHL----GDVVTTVPTV------GVNLETLQYKNISFE 69
Query: 58 LWDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWYPELK 105
+WD GQ +RP + TD + Y V S + + EL+
Sbjct: 70 VWDLGGQ---TGVRPYWRCYFSDTDA--VIYVVDSTDRDRMGVAKHELYALLDE--DELR 122
Query: 106 HHCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159
+ +++ K DL E E L + S N R ++
Sbjct: 123 ----KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN----------------RTWTIVK 162
Query: 160 CSALTQRGLRQVFD 173
S+ T GL + D
Sbjct: 163 SSSKTGDGLVEGMD 176
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 36.9 bits (85), Expect = 0.002
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
+D+ R+ + + + FD S P L + ++LVG K DL
Sbjct: 56 DDDFLRILNGIGKSDALVVKIVDI-----FDFNGSWL-PGLHRFVGNNKVLLVGNKADLI 109
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
+ + + + ++ G ++ SA +G+ ++ D
Sbjct: 110 -PKSVKHDKVKHWMRYSAKQLG------LKPEDVFLISAAKGQGIAELADA 153
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 36.8 bits (85), Expect = 0.002
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 65 EDYDRLRPLSYPQTDVFLICYSVV-SPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
+D+ + + + + SF P L D PI+LVG K DL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSF-------IPGLPRFAADNPILLVGNKADL- 110
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
R + + + E G + V SA G+ +V +
Sbjct: 111 LPRSVKYPKLLRWMRRMAEELG------LCPVDVCLVSAAKGIGMAKVMEA 155
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 36.0 bits (84), Expect = 0.003
Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 61/193 (31%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP---VSLGL 58
R ++ +++G GKT +L GE V PT+ F V+ + + +
Sbjct: 6 REMRILILGLDGAGKTTILYRLQV----GEVVTTIPTI------GFNVETVTYKNLKFQV 55
Query: 59 WDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWYPELKH 106
WD G +RP Y TD + Y V S S + + EL+
Sbjct: 56 WDLGGL---TSIRPYWRCYYSNTDA--VIYVVDSCDRDRIGISKSELVAMLEE--EELR- 107
Query: 107 HCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160
A +++ K D+ E +L L + ++ R + +
Sbjct: 108 ---KAILVVFANKQDMEQAMTSSEMANSLGLPALKD----------------RKWQIFKT 148
Query: 161 SALTQRGLRQVFD 173
SA GL + +
Sbjct: 149 SATKGTGLDEAME 161
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 36.3 bits (84), Expect = 0.003
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 110 DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA-VKYMECSALTQRGL 168
+ I++ KID + +LS + +++ + ++ +K+ S LT G+
Sbjct: 142 NKSIVIGFNKID---------KCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGV 192
Query: 169 RQVFDEAVRAVL--RPEPVKRRQ 189
Q A + + E + Q
Sbjct: 193 EQAKITACELLKNDQAESILLDQ 215
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 35.3 bits (82), Expect = 0.006
Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 61/193 (31%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP---VSLGL 58
+ K ++VG GKT +L ++ E V PT+ V+ I +
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSM----NEVVHTSPTI------GSNVEEIVINNTRFLM 64
Query: 59 WDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWYPELKH 106
WD GQ + LR Y T+ + V S + + +L+
Sbjct: 65 WDIGGQ---ESLRSSWNTYYTNTEF--VIVVVDSTDRERISVTREELYKMLAH--EDLR- 116
Query: 107 HCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160
A +++ K D++ E + L L S ++ C
Sbjct: 117 ---KAGLLIFANKQDVKECMTVAEISQFLKLTSIKD----------------HQWHIQAC 157
Query: 161 SALTQRGLRQVFD 173
ALT GL Q +
Sbjct: 158 CALTGEGLCQGLE 170
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 34.9 bits (81), Expect = 0.006
Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 61/193 (31%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP---VSLGL 58
+ K ++VG GKT +L ++ E V PT+ V+ I +
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSM----NEVVHTSPTI------GSNVEEIVINNTRFLM 69
Query: 59 WDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWYPELKH 106
WD GQ + LR Y T+ + V S + + +L+
Sbjct: 70 WDIGGQ---ESLRSSWNTYYTNTEF--VIVVVDSTDRERISVTREELYKMLAH--EDLR- 121
Query: 107 HCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160
A +++ K D++ E + L L S ++ C
Sbjct: 122 ---KAGLLIFANKQDVKECMTVAEISQFLKLTSIKD----------------HQWHIQAC 162
Query: 161 SALTQRGLRQVFD 173
ALT GL Q +
Sbjct: 163 CALTGEGLCQGLE 175
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 34.5 bits (80), Expect = 0.010
Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 61/193 (31%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP---VSLGL 58
R ++ +++G GKT +L + + PT+ F + + L +
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFNG----EDVDTISPTL------GFNIKTLEHRGFKLNI 66
Query: 59 WDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWYPELKH 106
WD GQ LR + TD + + V S ++ + L
Sbjct: 67 WDVGGQ---KSLRSYWRNYFESTDG--LIWVVDSADRQRMQDCQRELQSLLVE--ERLA- 118
Query: 107 HCPDAPIILVGTKIDL------REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160
A +++ K DL +E L L + + + C
Sbjct: 119 ---GATLLIFANKQDLPGALSCNAIQEALEL--------------DSIRS--HHWRIQGC 159
Query: 161 SALTQRGLRQVFD 173
SA+T L D
Sbjct: 160 SAVTGEDLLPGID 172
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 34.1 bits (79), Expect = 0.012
Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 61/191 (31%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP---VSLGLWD 60
++ ++VG GKT +L GE V PT+ F V+ + +S +WD
Sbjct: 1 MRILMVGLDAAGKTTILYKLKL----GEIVTTIPTI------GFNVETVEYKNISFTVWD 50
Query: 61 TAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWYPELKHHC 108
GQ D++RPL + T + + V S + ++ EL+
Sbjct: 51 VGGQ---DKIRPLWRHYFQNTQG--LIFVVDSNDRERVNEAREELMRMLAE--DELR--- 100
Query: 109 PDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162
DA +++ K DL E + L L S ++ R A
Sbjct: 101 -DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH----------------RNWYIQATCA 143
Query: 163 LTQRGLRQVFD 173
+ GL + D
Sbjct: 144 TSGDGLYEGLD 154
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 34.2 bits (79), Expect = 0.014
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 39/135 (28%)
Query: 54 VSLGLWDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWY 101
+ L +WD GQ +RP Y T + + V S + +
Sbjct: 62 LKLNVWDLGGQ---TSIRPYWRCYYADTAA--VIFVVDSTDKDRMSTASKELHLMLQE-- 114
Query: 102 PELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA-NKIRAVKYM-- 158
EL+ DA +++ K D LS +S ++L +++ +
Sbjct: 115 EELQ----DAALLVFANKQDQP------GALSASEVS-------KELNLVELKDRSWSIV 157
Query: 159 ECSALTQRGLRQVFD 173
SA+ G+ + D
Sbjct: 158 ASSAIKGEGITEGLD 172
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 33.8 bits (78), Expect = 0.018
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 45/138 (32%)
Query: 54 VSLGLWDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWY 101
+ +WD GQ D++RPL + T + + V S + +
Sbjct: 73 ICFTVWDVGGQ---DKIRPLWRHYFQNTQG--LIFVVDSNDRERVQESADELQKMLQE-- 125
Query: 102 PELKHHCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155
EL+ DA +++ K D+ E + L L ++ R
Sbjct: 126 DELR----DAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS----------------RTW 165
Query: 156 KYMECSALTQRGLRQVFD 173
A GL D
Sbjct: 166 YVQATCATQGTGLYDGLD 183
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 34.1 bits (79), Expect = 0.018
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 103 ELKHHCP---DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159
EL + + P I+V K+D+ E E L E KL +
Sbjct: 264 ELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKE------------KLTDDY---PVFP 308
Query: 160 CSALTQRGLRQVFDEAVRAV--LRPEPV 185
SA+T+ GLR++ E + P+
Sbjct: 309 ISAVTREGLRELLFEVANQLENTPEFPL 336
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 33.3 bits (77), Expect = 0.023
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 47/139 (33%)
Query: 54 VSLGLWDTAGQEDYDRLRPL---SYPQTDVFLICYSVV----------SPSSFDNVTSKW 100
L +WD GQ ++RP + TD+ + Y V+ + + +
Sbjct: 60 FKLNVWDIGGQ---RKIRPYWRSYFENTDI--LIY-VIDSADRKRFEETGQELTELLEE- 112
Query: 101 YPELKHHCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRA 154
+L P+++ K DL E E LNL + + R
Sbjct: 113 -EKLS----CVPVLIFANKQDLLTAAPASEIAEGLNL--------------HTIRD--RV 151
Query: 155 VKYMECSALTQRGLRQVFD 173
+ CSALT G++ +
Sbjct: 152 WQIQSCSALTGEGVQDGMN 170
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 32.8 bits (75), Expect = 0.038
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 24/164 (14%)
Query: 18 GKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLS--- 74
GKT + + T + + ++ D+ + + SL L D G E LR
Sbjct: 19 GKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE---SLRFQLLDR 74
Query: 75 -YPQTD--VFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILV-GTKIDLREDRET 128
VF++ S +V Y L ++P +L+ K D+
Sbjct: 75 FKSSARAVVFVV-DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA----- 128
Query: 129 LNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
S + + ++Q +K N +R + S L
Sbjct: 129 -MAKSAKLI----QQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 167
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 33.1 bits (75), Expect = 0.041
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 29/129 (22%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP------------VSLG 57
+++G GK+ + VF N T+ + L
Sbjct: 3 LLMGVRRCGKSSIC-------------KVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLA 49
Query: 58 LWDTAGQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFD-NVTSKWYPELKHHCPDAPI 113
+ + GQ +Y S + + + P I
Sbjct: 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINI 109
Query: 114 ILVGTKIDL 122
++ K+D
Sbjct: 110 EVLIHKVDG 118
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 32.9 bits (76), Expect = 0.048
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 24/98 (24%)
Query: 103 ELKHHCP---DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159
E+ + P P ++ K+D LL E+ + + + + +
Sbjct: 259 EVGAYDPALLRRPSLVALNKVD---------LLEEEAVKALADALAR------EGLAVLP 303
Query: 160 CSALTQRGLRQVFD------EAVRAVLRPEPVKRRQRK 191
SALT GL + + + P+PV R++ +
Sbjct: 304 VSALTGAGLPALKEALHALVRSTPPPEMPKPVPRKEVQ 341
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.7 bits (74), Expect = 0.068
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 28/159 (17%)
Query: 6 PIKCVVVGDGTVGKT------CMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLW 59
+ V G+ GK+ + + + V P+ IP ++ W
Sbjct: 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--MERHPYKHPNIP-NVVFW 125
Query: 60 DTAG-----QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII 114
D G L + + + D F+I + D +K +K
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT-RFKKNDIDIAKAISMMKK-----EFY 179
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153
V TK+D ++ + + +K+ IR
Sbjct: 180 FVRTKVDS--------DITNEADGEPQTFDKEKVLQDIR 210
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.1 bits (74), Expect = 0.092
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 103 ELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPV-----KREQG-QKLANKIRAV 155
E+ P+ILV KIDL E + +L +N++ + ++QG L I +
Sbjct: 323 EIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEI 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.12
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 50/138 (36%)
Query: 33 GEYVPTVFDNYSA--------PFTVDGIP-VSL-GLW-------DTAGQEDYD--RLRP- 72
GEY +A + V G+ D G+ +Y + P
Sbjct: 1765 GEY--------AALASLADVMSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 73 ---LSYPQTDVFLICYSVVSPSSF------DNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
S+ Q + + V + + N + + G L
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYN------------VENQQYVAAGDLRALD 1863
Query: 124 EDRETLNLLSEQNLSPVK 141
LN + Q + ++
Sbjct: 1864 TVTNVLNFIKLQKIDIIE 1881
Score = 31.6 bits (71), Expect = 0.17
Identities = 24/175 (13%), Positives = 41/175 (23%), Gaps = 62/175 (35%)
Query: 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS----FDNVTSKW----YPEL 104
+ +W+ A D + D+ + +P + F K Y +
Sbjct: 1640 KAAQDVWNRA---DNHFKDTYGFSILDIVI-----NNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 105 K-HHCPDAPIIL---------VGTKIDLREDRETLNLLSEQNLSP-----------VKRE 143
D + T R ++ L+ Q P +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQFTQPALTLMEKAAFEDLKS 1749
Query: 144 QGQKLANKIRAVKYM------ECSALTQRGLRQV--FDEAVRAVLRPEPVKRRQR 190
+G I A E +AL V + V V R
Sbjct: 1750 KG-----LIPADATFAGHSLGEYAALASLA--DVMSIESLVEVV--------FYR 1789
Score = 29.2 bits (65), Expect = 1.0
Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 48/162 (29%)
Query: 46 PFTV-DG-----IPVSLGLWDTAGQ--EDYDRLRPLSY--------PQTDV-----FLIC 84
P T+ G + V + A Q E ++++ P P T FL
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL-G 66
Query: 85 Y--SVVSPS---SFDNVTSKWYPELKHHCPDAPIILVGTKI-DLREDRETLNLLSEQNLS 138
Y S+V PS FD V + E ++ L G I L LL E + +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENC------YLEGNDIHAL-----AAKLLQENDTT 115
Query: 139 PVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEA-VRAV 179
VK ++L I+ Y+ + +R + + A RAV
Sbjct: 116 LVKT---KEL---IKN--YITARIMAKRPFDKKSNSALFRAV 149
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.2 bits (71), Expect = 0.13
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 18 GKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL 73
GKT +L TTDS V + D + L D G +LR
Sbjct: 60 GKTSLLTLLTTDSVR-PTVVSQEPL----SAADYDGSGVTLVDFPGHV---KLRYK 107
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 31.3 bits (72), Expect = 0.18
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPE-------LKHHCPDAPIILVGTKIDLREDRETL 129
DV + + V ++ PE LK PI+LVG K+D + E
Sbjct: 86 DVNAVVWVV-------DLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEA 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 31.0 bits (70), Expect = 0.18
Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 61/193 (31%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP---FTVDGIP---VSLGL 58
+ ++ ++VG GKT +L GE V T+ P F V+ + +S +
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLKL----GEIVTTI------PTIGFNVETVEYKNISFTV 213
Query: 59 WDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVTSKWYPELKH 106
WD GQ D++RPL + T LI + V S + ++ EL+
Sbjct: 214 WDVGGQ---DKIRPLWRHYFQNTQ-GLI-FVVDSNDRERVNEAREELMRMLAE--DELR- 265
Query: 107 HCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160
DA +++ K DL E + L L S ++ R
Sbjct: 266 ---DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH----------------RNWYIQAT 306
Query: 161 SALTQRGLRQVFD 173
A + GL + D
Sbjct: 307 CATSGDGLYEGLD 319
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 31.0 bits (71), Expect = 0.21
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 102 PELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSP------VKREQG-QKLANKIRA 154
ELK P A + V K+D + + L G L +
Sbjct: 335 RELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGD 394
Query: 155 V 155
+
Sbjct: 395 L 395
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.32
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 104 LKHHCPD-APIILVGTKID 121
LK + D AP + + ++
Sbjct: 29 LKLYADDSAPALAIKATME 47
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 30.3 bits (68), Expect = 0.35
Identities = 42/202 (20%), Positives = 66/202 (32%), Gaps = 71/202 (35%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTV--------FDNYSAPFTV 49
S + ++ +++G GKT +L G+ V PTV + N F V
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKL----GQSVTTIPTVGFNVETVTYKNVK--FNV 370
Query: 50 DGIPVSLGLWDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSP---------SSFDNVT 97
WD GQ D++RPL Y T LI + V +
Sbjct: 371 ---------WDVGGQ---DKIRPLWRHYYTGTQ-GLI-FVVDCADRDRIDEARQELHRII 416
Query: 98 SKWYPELKHHCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANK 151
+ E++ DA I++ K DL E +E L L ++ +
Sbjct: 417 ND--REMR----DAIILIFANKQDLPDAMKPHEIQEKLGL--------------TRIRD- 455
Query: 152 IRAVKYMECSALTQRGLRQVFD 173
R A + GL +
Sbjct: 456 -RNWYVQPSCATSGDGLYEGLT 476
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.4 bits (67), Expect = 0.40
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 100 WYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQN---LSPVKREQG-QKLANKIRAV 155
W + PI +V K D+ + ++ ++ LS + +G L N ++
Sbjct: 105 WPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLS-ARTGEGVDVLRNHLKQS 163
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.7 bits (67), Expect = 0.44
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 18 GKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL 73
GKT +L TTDS V + D + L D G +LR
Sbjct: 24 GKTSLLTLLTTDSVR-PTVVSQEPL----SAADYDGSGVTLVDFPGHV---KLRYK 71
>4en6_A Hemagglutinin components HA-22/23/53; carbohydrate/sugar binding,
sugar binding protein; HET: SIA GAL BGC; 2.56A
{Clostridium botulinum} PDB: 4en7_A* 4en8_A* 4en9_A*
2z5a_A 2zoe_A* 2zs6_A
Length = 224
Score = 29.4 bits (65), Expect = 0.68
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 11 VVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT-VDGIPVSLGLWDTAG------ 63
+VGD + +T Y T SF EY+ N A FT IP+ TA
Sbjct: 76 IVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTAPSNKSLY 135
Query: 64 ---QEDYDRLRPLSYPQTDVF---------LICYSVVSPSSFDNVTSKWYPELKHHCPDA 111
Q Y R + Q V L + +S + + +Y + C
Sbjct: 136 MYLQYTYIRYEIIKVLQNTVTERAVLYVPSLGYVKSIEFNSEEQIDKNFYFTSQDKCILN 195
Query: 112 PIILVGTKIDLREDRETLNLLSEQNLSP 139
+ D +E+ N + N +
Sbjct: 196 EKFIYKKIDDTITVKESKNSNNNINFNT 223
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 29.0 bits (66), Expect = 0.88
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 110 DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLR 169
+ P+I+V KID + + P+ E +K V SAL L
Sbjct: 122 NKPVIVVINKIDKIGPAKNVL--------PLIDEIHKKHPELTEIVP---ISALKGANLD 170
Query: 170 QVFDE 174
++
Sbjct: 171 ELVKT 175
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate
binding, plant cell WALL degradation, hydrolase,
cellulases; 1.80A {Cellvibrio japonicus}
Length = 347
Score = 29.1 bits (64), Expect = 0.91
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 14/113 (12%)
Query: 26 YTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD-TAGQEDYDRLRPLSYPQTDVFLIC 84
+ G + +++ +P + T G Q D+ +
Sbjct: 179 VQLVCWGGR---GLIRSWNGKTDDANLP---DFYQFTLGDTGQAPQWDHHRYQPDLIISA 232
Query: 85 -------YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130
+ +++ N +++ L + P A I+L I + + L
Sbjct: 233 IGTNDFSPGIPDRATYINTYTRFVRTLLDNHPQATIVLTEGAILNGDKKAALV 285
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 29.1 bits (66), Expect = 0.97
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 103 ELKHHCPDAPIILVGTKIDL--REDRETLNLLSEQNLSPV----KREQG-QKLANKIR 153
++ + ++V K+D+ + + E + + V + +G +KL I
Sbjct: 343 KILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIY 400
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 29.1 bits (65), Expect = 1.1
Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 19/115 (16%)
Query: 13 GDGTVGKTCMLISYTTDSFPGEYVPTVFDN---YSAP----FTVDGIPVSLGLW------ 59
GD + K +SY +D F + + D Y +G V L LW
Sbjct: 285 GDFSDTKHPYTVSYNSDQFTTKTSWRLKDETYSYDGKLGADLKEEGKQVDLTLWSPSADK 344
Query: 60 ------DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC 108
D + L + + + + T +Y
Sbjct: 345 VSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGITDFTGYYYQYQIERQ 399
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 28.2 bits (64), Expect = 1.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1 MSSGRPIKCVVVGDGTVGKTC 21
M+ + K V++G+G VG +
Sbjct: 1 MNKFKGNKVVLIGNGAVGSSY 21
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 27.7 bits (62), Expect = 3.0
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 110 DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLR 169
+ P ++V KID+ + K E+ + L K + SAL ++G
Sbjct: 140 EIPFVVVVNKIDVLGE---------------KAEELKGLYESRYEAKVLLVSALQKKGFD 184
Query: 170 QVFDEAVRAVLRPEP 184
+ + + +L +
Sbjct: 185 DIG-KTISEILPGDE 198
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 27.0 bits (61), Expect = 3.4
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129
DV L+ + VV + + +L+ AP+IL K+D +++ L
Sbjct: 88 DVELVIF-VVEGTRWTPDDEMVLNKLREG--KAPVILAVNKVDNVQEKADL 135
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 27.2 bits (61), Expect = 3.7
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 108 CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167
PI++ KID ++ + + + SAL +
Sbjct: 290 VSGKPILVTLNKID---------KINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTN 340
Query: 168 LRQVFDEAVRAVLRPEPVKR 187
L + + + + ++
Sbjct: 341 LELLR-DKIYQLATQLSLEH 359
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 27.1 bits (61), Expect = 3.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 1 MSSGRPIKCVVVGDGTVGKTC 21
M + + VV+G G VG +
Sbjct: 1 MKNNGGARVVVIGAGFVGASY 21
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 26.5 bits (59), Expect = 4.8
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 112 PIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171
P I+ K+D + + Q + E ++ ++ SA + ++
Sbjct: 124 PTIVAVNKLD--------KIKNVQEVINFLAE-KFEVPLSEIDKVFIPISAKFGDNIERL 174
Query: 172 FDEAVRAVLRPEPVKR 187
+ + V+R +R
Sbjct: 175 KN-RIFEVIRERQGRR 189
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 5.7
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLIS-YTTDSFPGEYVP----TVFDNYSAPFTVDGIPVS 55
+S G + VG+ +GK+ ++ + + T + + + +
Sbjct: 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 56 LGLWDTAGQED 66
L + T G D
Sbjct: 97 LTIVSTVGFGD 107
>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like
fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP:
a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
Length = 746
Score = 26.8 bits (58), Expect = 6.5
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 117 GTKIDLREDRETLNLLSEQNLSP-----VKREQGQKLANKIRAVK 156
G + L++ + T +EQ+ P V + ++L KI A+K
Sbjct: 566 GKILGLKQFKLTAGFPTEQSRLPLLENSVSEDLREELMQKIDAIK 610
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 26.4 bits (58), Expect = 6.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 1 MSSGRPIKCVVVGDGTVGK 19
M+ + I+ +VG G +G+
Sbjct: 4 MTDDKKIRAAIVGYGNIGR 22
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 25.9 bits (58), Expect = 8.5
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 152 IRAVKYMECSALTQRGLRQVFDEAVRA 178
+A+K +E LR++F +A+ A
Sbjct: 239 EQAIKVLE-----SGNLRELFIKALTA 260
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone,
flagellar P-ring formation, flagellar FLGI protei
periplasmic protein; 1.95A {Salmonella typhimurium}
Length = 219
Score = 25.8 bits (56), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 1 MSSGRPIKCVVVGDGTV 17
M+SG+ + V DG +
Sbjct: 178 MTSGQIVSGTVDSDGNI 194
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,046,713
Number of extensions: 172537
Number of successful extensions: 849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 154
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)