RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10443
(195 letters)
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 167 bits (422), Expect = 2e-53
Identities = 121/191 (63%), Positives = 151/191 (79%), Gaps = 1/191 (0%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-P 180
Query: 185 VKRRQRKCVII 195
++ R+CV++
Sbjct: 181 EPKKSRRCVLL 191
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 158 bits (400), Expect = 3e-50
Identities = 130/180 (72%), Positives = 157/180 (87%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 155 bits (393), Expect = 4e-49
Identities = 114/185 (61%), Positives = 142/185 (76%), Gaps = 3/185 (1%)
Query: 1 MSSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLG 57
M+ G +KCVVVGDG VGKTC+L+SY D+FP EYVPTVFD+Y+ TV G LG
Sbjct: 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG 60
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
L+DTAGQEDYDRLRPLSYP TDVFLIC+SVV+P+SF NV +W PELK + P+ P +L+G
Sbjct: 61 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
T+IDLR+D +TL L++ P+ EQGQKLA +I A Y+ECSALTQ+GL+ VFDEA+
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
Query: 178 AVLRP 182
A+L P
Sbjct: 181 AILTP 185
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 147 bits (370), Expect = 9e-46
Identities = 102/175 (58%), Positives = 124/175 (70%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAG ED
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 144 bits (362), Expect = 2e-44
Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L LWDT+G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG K DLR D
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVLR 181
TL LS +PV +QG +A +I A Y+ECSAL + +R +F A A +
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 140 bits (353), Expect = 3e-43
Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGK+C+L+ + D F ++ T+ ++ ++G V L +WDTAGQE
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y ++ Y + +F N+ + +H +A ++LVG K D+
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T +QG+ LA ++ + ++E SA + ++F + +
Sbjct: 123 VVT-------------ADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 164
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 136 bits (344), Expect = 9e-42
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGKTC+L ++ D+F ++ T+ ++ +DG + L +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y ++ Y + + SFDN+ + +H D +++G K D+ +
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V +E+G+KLA +K+ME SA + F R +
Sbjct: 127 R------------QVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKA 169
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 130 bits (328), Expect = 2e-39
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGKTC++ +T FP T+ D ++G V L +WDTAGQE
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y + ++ Y + SF + ++ +LVG KIDL E
Sbjct: 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE +Q + ++ + + Y+E SA + ++F + ++
Sbjct: 126 RE-------------VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 129 bits (325), Expect = 9e-39
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++G+ VGK+C+L+ ++ D++ +Y+ T+ ++ +DG V L +WDTAGQE
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y + +I Y V SF+ V ++ +LVG K DL++
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR---- 181
R K + ++E SAL + F R +
Sbjct: 127 RV-------------VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 173
Query: 182 ---PEPVKRRQRKCVI 194
E ++++ K +
Sbjct: 174 QNLNETTQKKEDKGNV 189
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 127 bits (319), Expect = 4e-38
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L +T F + T+ + V G + L +WDTAGQE
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y L+ Y + S++++++S P+ IIL+G K DL
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R V E+ ++ A + ++E SA T + F EA + +
Sbjct: 125 R------------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 165
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 125 bits (315), Expect = 2e-37
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQED 66
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAGQE
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
Y R+ Y L+ Y + +++NV H + I+LVG K DLR R
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
V ++ + + + ++E SAL + + F + + R V
Sbjct: 126 ------------AVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYR--IVS 170
Query: 187 RRQ 189
++Q
Sbjct: 171 QKQ 173
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 125 bits (314), Expect = 3e-37
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L+ +T F + T+ + + +DG + L +WDTAGQE
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ + Y L+ Y + +F+++TS +H + I+L+G K DL R
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
VKRE+G+ A + +ME SA T + + F + + R
Sbjct: 125 ------------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYR 166
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 124 bits (312), Expect = 5e-37
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K ++VGD VGKTC+L+ + +F G ++ TV ++ + VDG+ V L +WDTAGQE
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y L+ Y V + +SFDN+ + ++ D ++L+G K+D +
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R VKRE G+KLA + + +ME SA T + F + + R
Sbjct: 128 R------------VVKREDGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKELKR 170
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 123 bits (309), Expect = 1e-36
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + T +F +Y PT+ D Y VD P L + DTAG
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
E + +R L F++ YS+V+ SF ++ ++ P+ILVG K+DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+R V +G+ LA + +ME SA ++ + ++F E VR +
Sbjct: 122 SER------------EVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 123 bits (309), Expect = 1e-36
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQED 66
K +V+G+ GK+C+L + F + T+ + S V G V L +WDTAGQE
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ + Y L+ Y + S +++ +T+ + IIL G K DL DR
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E + + ++E SALT + + F + R +L
Sbjct: 127 E-------------VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 123 bits (309), Expect = 2e-36
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 31/199 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-----------SAPFTVDGIPVS 55
IK + +GD VGKT L YT + F +++ TV ++ + V
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPII 114
L LWDTAGQE + L + FL+ + + S SF NV + + C + I+
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
L+G K DL + R V Q ++LA+K + Y E SA T + + + +
Sbjct: 126 LIGNKADLPDQR------------EVNERQARELADKYG-IPYFETSAATGQNVEKAVET 172
Query: 175 AVRAVLRPEPVKRRQRKCV 193
+ ++ +R +CV
Sbjct: 173 LLDLIM------KRMEQCV 185
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 122 bits (307), Expect = 2e-36
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQED 66
K V +G+ +VGKT ++ + DSF Y T+ ++ + + + L LWDTAGQE
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ L P + ++ Y + + +SF T D I+LVG K DL + R
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ E+G++ A ++ ++E SA ++Q+F A+
Sbjct: 122 QV------------SIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAAL 161
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 119 bits (300), Expect = 3e-35
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++G+ VGK+ +L+ +T D+F E T+ D +VDG L +WDTAGQE
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ L P Y ++ Y V +F + + + + + ++ +E+
Sbjct: 68 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
RE V R +G K A K ++ ++E SA T G++ F+E V +++
Sbjct: 128 RE------------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQT 171
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 119 bits (299), Expect = 4e-35
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQED 66
K +++G+ +VGKT L Y DSF +V TV ++ + + L +WDTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
Y + Y F++ Y + + SF+ V + +A ++LVG K D+ ++R
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ Q ++ E SA ++Q F+ V +
Sbjct: 127 VVSSERGRQLA-------------DHLGFEFFEASAKDNINVKQTFERLVDVICE 168
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 118 bits (297), Expect = 9e-35
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 3 SGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLW 59
+G+ K +++GDG VGK+ ++ Y T+ F + T+ + VDG V++ +W
Sbjct: 1 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPII 114
DTAGQE + LR Y +D L+ +SV SF N++ W E ++ P +
Sbjct: 61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFV 119
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
++G KID+ E + + E+ Q Y E SA + F+E
Sbjct: 120 ILGNKIDISERQVS-------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 166
Query: 175 AVRAVL 180
AVR VL
Sbjct: 167 AVRRVL 172
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 112 bits (281), Expect = 2e-32
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + F +Y PT+ D+Y VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
E + +R L F + YS+ + S+F+++ L+ D P+ILVG K D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD-- 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++ V +EQGQ LA + ++E SA ++ + ++F + VR + R
Sbjct: 120 ----------LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 108 bits (271), Expect = 5e-31
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQED 66
K V++G+G VGKT +++ Y + F +++ T+ ++ + G V+L +WDTAGQE
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ L P+ Y ++ ++ Y + SF V + K + + +VG KIDL ++R
Sbjct: 65 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
V ++ + A + A K+ SA +G+ ++F + + ++
Sbjct: 125 ------------HVSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMI 165
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 108 bits (270), Expect = 9e-31
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVG G VGK+ + I + F EY PT+ D+Y +DG L + DTAGQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDL 122
E+Y +R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
Q Q LA + Y+E SA T++G+ F VR + +
Sbjct: 121 AARTVE-------------SRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 108 bits (269), Expect = 1e-30
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT--VDGIPVSLGLWDTAGQ 64
+K +++GD VGKT ++ Y D + +Y T+ ++ ++ +WDTAGQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA----PIILVGTKI 120
E + L Y D ++ Y V + SSF+N+ S L H ++ P +++G KI
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D E ++ V + Q+LA + + SA + F+E R+ L
Sbjct: 123 DAEESKK-----------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171
Query: 181 R 181
+
Sbjct: 172 Q 172
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 107 bits (268), Expect = 2e-30
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++G+ VGK+ +++ + F T+ + +D V +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
Y L P+ Y ++ Y + + SF + + P+ I L G K DL R
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
Q + ++ +ME SA T + ++F + + +
Sbjct: 128 A-------------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 107 bits (267), Expect = 2e-30
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVG G VGK+ + I + F +Y PT+ D+Y+ +VDGIP L + DTAGQ
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
E++ +R FL+ +++ SF+ V + L+ D P++LVG K DL
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V Y E SA + + + F++ VRAV +
Sbjct: 125 SQRQ-------------VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 106 bits (264), Expect = 6e-30
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 14/176 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLG-LWDTAG 63
R +K ++GD VGK+ ++ + DSF PT+ ++ + +WDTAG
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
E + L P+ Y + +I Y + +F + + +H P + + G
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG------ 116
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
N ++ V + A+ I A ++E SA + ++F E R +
Sbjct: 117 ------NKCDLTDVREVMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRI 165
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 105 bits (263), Expect = 1e-29
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + + FL +S+ SF T+ + ++ + P +LVG K DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAA-TADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V E+ + A++ V Y+E SA T+ + +VF + +R +
Sbjct: 125 R------------QVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREIRA 167
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 102 bits (253), Expect = 3e-28
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 11/174 (6%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDG-IPVSLGLWDTAGQE 65
IK V++G+ VGK+ +++ + ++ F PT+ + V +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ L P+ Y L+ Y V P SF + D I LVG KID+ ++
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ E+ + + + + E SA T + VF +
Sbjct: 124 GGERKVAREEGEKLAEE----------KGLLFFETSAKTGENVNDVFLGIGEKI 167
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 100 bits (249), Expect = 1e-27
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+ V G G VGK+ +++ + +F Y+PTV D Y + D +L + DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWY--PELKHHCPDAPIILVGTKIDLRE 124
+ ++ LS + F++ YS+ S S + + + E+K PI+LVG K D
Sbjct: 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V+ + + LA + +ME SA ++++F E + R
Sbjct: 123 SR------------EVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLNLEKR 166
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 100 bits (249), Expect = 2e-27
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 18/186 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD-NYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGKT ++ Y F +Y T+ + VD V++ +WDTAGQE
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP----DAPIILVGTKID 121
+ L Y D ++ + V +P++F + S L P + P +++G KID
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L + ++ Q + Y E SA + Q F R L+
Sbjct: 123 LENRQVA-------------TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169
Query: 182 PEPVKR 187
E
Sbjct: 170 QETEVE 175
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 99.3 bits (246), Expect = 3e-27
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + VVVG G VGK+ + I + F +Y PT+ D+Y+ +D L + DT
Sbjct: 1 SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKI 120
AGQE++ +R + FL+ +SV SF+ + L+ D P+IL+G K
Sbjct: 61 AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL R+ E+GQ+LA +++ YME SA + + Q F E VR +
Sbjct: 121 DLDHQRQVTQ------------EEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVIR 167
Query: 181 R 181
+
Sbjct: 168 K 168
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 95.9 bits (237), Expect = 7e-26
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 15/176 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVGDG VGK+ + I + F +Y PT+ D+Y +D L + DTAGQE++
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDR 126
+R D FLI YSV +SF++V L+ P+ILV K+DL R
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVLR 181
V R+QG+++A K + Y+E SA + + F + VR + +
Sbjct: 126 ------------KVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 168
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 92.8 bits (229), Expect = 1e-24
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 14/176 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+K + G VGK+ +++ + T F EY PT+ Y T+D VS+ + DTAGQED
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ L+ S + + K + + +ILVG K DL R
Sbjct: 63 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG-LRQVFDEAVRAVLR 181
V E+G+KLA ++ A + ECSA T G + ++F E R V R
Sbjct: 123 ------------QVSTEEGEKLATEL-ACAFYECSACTGEGNITEIFYELCREVRR 165
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 91.6 bits (226), Expect = 3e-24
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKT + + T F +YV T+ + + F + P+ +WDTAGQE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ LR Y Q +I + V S ++ NV W+ +L C + PI+L G K+D+++ +
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
+ ++ + ++Y + SA + + F R ++
Sbjct: 124 VK---------------AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 91.3 bits (225), Expect = 3e-24
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 13/173 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
++ ++VG GKT +L T+ TV+ +S +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
L + T + + + L ++LV +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
N + + + G R A + GL + D +
Sbjct: 117 M--------NAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 90.5 bits (223), Expect = 8e-24
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 19/176 (10%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAG 63
R K +V+GD VGKTC+ + FP T+ + +DG + + LWDTAG
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60
Query: 64 QEDYDRL-RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121
QE + + Y + Y + + +SF ++ + +H D P ILVG K D
Sbjct: 61 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR---GLRQVFDE 174
LR V + QK A+ E SA + +F
Sbjct: 121 LRSAI------------QVPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMT 163
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 88.6 bits (218), Expect = 5e-23
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 12/177 (6%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ K ++G +VGK+ + I + F Y PT+ + ++ TV+G L L DTAGQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
++Y + +++ YSV S SF+ + L I++
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML-------- 114
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
N + E+G+ LA A ++E SA + VF + +
Sbjct: 115 ---VGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAEK 167
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 87.8 bits (216), Expect = 9e-23
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
IK VVVG+G VGK+ M+ Y F +Y T+ D V+ V L LWDTAGQE
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
++D + Y ++ +S SF+ ++ W ++ D P LV KIDL +D
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 121
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+K E+ + LA +++ ++ S + +VF L+
Sbjct: 122 S------------CIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 164
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 87.4 bits (215), Expect = 2e-22
Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 19/184 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
++ V+GD GK+ ++ + T S+ T + Y VDG + + + AG D
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLR 123
D + +S+ +SF V+ + LVGT+ +
Sbjct: 65 AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
V + + L ++ Y E A + +VF E + V+
Sbjct: 120 ASSPR----------VVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169
Query: 184 PVKR 187
++
Sbjct: 170 KQQQ 173
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 84.0 bits (206), Expect = 4e-21
Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 7/178 (3%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ K V +G GKT +L D + + ++ +D G
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDLGGH 67
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLR 123
R+ P + + + + + PI+++G KID
Sbjct: 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAV 179
E L L +G ++ R ++ CS L ++G + F + +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 81.9 bits (201), Expect = 1e-20
Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 15/174 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+ + ++ +++G GKT +L T+ TV V +WD
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVETVTYKNVKFNVWD 62
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTK 119
GQ+ L Y T + D + + + DA I++ K
Sbjct: 63 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 122
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
DL + ++ + G R A + GL +
Sbjct: 123 QDLPDAM---------KPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLT 166
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 82.0 bits (201), Expect = 2e-20
Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 15/180 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+ + + K ++VG GKT +L ++ E V T S + +WD
Sbjct: 10 LFNHQEHKVIIVGLDNAGKTTILYQFSM----NEVVHTSPTIGSNVEEIVINNTRFLMWD 65
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTK 119
GQE Y T+ ++ + Y L H A +++ K
Sbjct: 66 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 125
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D++E ++ + + C ALT GL Q + + +
Sbjct: 126 QDVKECM---------TVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGLEWMMSRL 175
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 81.6 bits (200), Expect = 3e-20
Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 15/179 (8%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + ++ +++G GKT +L PT+ N T+ + L +WD
Sbjct: 13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV---ETLSYKNLKLNVWDL 68
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKI 120
GQ Y T + + + + L+ DA +++ K
Sbjct: 69 GGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQ 128
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D + S V +E R+ + SA+ G+ + D + +
Sbjct: 129 DQPGAL---------SASEVSKELNLVELKD-RSWSIVASSAIKGEGITEGLDWLIDVI 177
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 81.2 bits (199), Expect = 3e-20
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 15/179 (8%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
+ + ++ +++G GKT +L ++ F+ +V L +WD
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDI 67
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKI 120
GQ + TD+ + F+ + L+ P+++ K
Sbjct: 68 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL S + R + CSALT G++ + + V
Sbjct: 128 DLLTAAP---------ASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 79.4 bits (194), Expect = 2e-19
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 8/167 (4%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K + +G GKT +L D PT + + +D G
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDR 126
RL +P+ + + P FD + D P +++G KID
Sbjct: 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
L S L Q + R V+ CS + + G + F
Sbjct: 118 SEAELRSALGLLNTTGSQRIE---GQRPVEVFMCSVVMRNGYLEAFQ 161
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 77.0 bits (188), Expect = 9e-19
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
++ +VG GKT + + F + +PTV N + V++ LWD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLRED 125
+ + + + ++ + L P++++G K DL
Sbjct: 60 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
+ + + R + S + + ++
Sbjct: 120 L---------DEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQWLIQ 161
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 74.6 bits (182), Expect = 2e-17
Identities = 28/201 (13%), Positives = 60/201 (29%), Gaps = 29/201 (14%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K +++G G GK+ + VPT + D V + D GQ
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQ 55
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSK----------WYPELKHHC-PDAPI 113
R + + ++ + + + + ++ +
Sbjct: 56 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM-------------EC 160
IL K DL E++ + L + ++ + A + ++
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175
Query: 161 SALTQRGLRQVFDEAVRAVLR 181
A +R VF +L+
Sbjct: 176 CATDTENIRFVFAAVKDTILQ 196
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 74.2 bits (181), Expect = 2e-17
Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 32/201 (15%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K +++G G GK+ ++ G + + ++D GQ
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVET--------HFTFKDLHFKMFDVGGQ 52
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNV----------TSKWYPELKHHC-PDAPI 113
+ + + C ++ + + D I
Sbjct: 53 RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-------------RAVKYMEC 160
IL K DL E++ + L+ ++ A I + +
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172
Query: 161 SALTQRGLRQVFDEAVRAVLR 181
A + ++ VFD +++
Sbjct: 173 CATDTKNVQFVFDAVTDVIIK 193
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 72.8 bits (177), Expect = 4e-17
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 15/176 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R ++ +++G GKT +L + + PT+ N +WD GQ
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIKTLEHRGFKLN---IWDVGGQ 56
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLR 123
+ + TD + + + L A +++ K DL
Sbjct: 57 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ L ++ + CSA+T L D + +
Sbjct: 117 GALSCNAIQEALELDSIRSHH----------WRIQGCSAVTGEDLLPGIDWLLDDI 162
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 72.8 bits (177), Expect = 4e-17
Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 21/186 (11%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R ++ +++G GKT +L GE V T+ TV + +WD G
Sbjct: 4 REMRILILGLDGAGKTTILYRLQV----GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 59
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
Y TD + S+ L+ A +++ K D+
Sbjct: 60 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
+ S + G R + + SA GL + + V
Sbjct: 120 QAM---------TSSEMANSLGLPALKD-RKWQIFKTSATKGTGLDEAMEWLVET----- 164
Query: 184 PVKRRQ 189
+K RQ
Sbjct: 165 -LKSRQ 169
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 72.9 bits (177), Expect = 5e-17
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 17/178 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTT--DSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65
+ V++G+ VGK+ + + DS + D Y VDG ++ L D +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE--LKHHCPDAPIILVGTKIDLR 123
+ Q + ++ + S+ + D PIILVG
Sbjct: 65 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG------ 118
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
N V +G+ A K++E SA Q ++++F+ VR V
Sbjct: 119 ------NKSDLVRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRL 169
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 72.1 bits (175), Expect = 8e-17
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 20/185 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K +++G VGK+ + + G Y VDG SL ++D Q+
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLREDR 126
L D ++I YSV SF+ + + D PIILVG K DL R
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
V ++G+ A K++E SA ++ +F+ VR +
Sbjct: 122 ------------EVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIR-----L 163
Query: 187 RRQRK 191
RR K
Sbjct: 164 RRDSK 168
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 62.6 bits (151), Expect = 5e-13
Identities = 29/202 (14%), Positives = 55/202 (27%), Gaps = 31/202 (15%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K +++G G GK+ L PT + + + V + D GQ
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----------PDAPI 113
+ + L S + + + I
Sbjct: 55 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM--------------E 159
IL K DL E++ + + + L + K +
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174
Query: 160 CSALTQRGLRQVFDEAVRAVLR 181
+A+ +R VF + +L
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 59.3 bits (142), Expect = 8e-12
Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 30/195 (15%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR 69
+ VG GKT + + T + + ++ D+ + + SL L D G E
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 70 LRPLSY-PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA----PIILVGTKIDL-- 122
+ + + +++ ++ +++ K D+
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Query: 123 -REDRETLNLLSEQNLSPVKREQGQKLANKIRA---------------------VKYMEC 160
+ + L ++ + + V+++EC
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 182
Query: 161 SALTQRGLRQVFDEA 175
SA RG D
Sbjct: 183 SAKGGRGDTGSADIQ 197
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 47.8 bits (113), Expect = 1e-07
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 20/131 (15%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
+ +++G G GK+ ++ V T V+ ++D GQ D
Sbjct: 8 RLLLLGAGESGKSTIVKQMRI----LHVVLTSGIFET----KFQVDKVNFHMFDVGGQRD 59
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSK----------WYPELKHHCP-DAPIIL 115
R + + + S + ++ + + +IL
Sbjct: 60 ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 119
Query: 116 VGTKIDLREDR 126
K DL ++
Sbjct: 120 FLNKQDLLAEK 130
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 38.8 bits (89), Expect = 1e-04
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 19/173 (10%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPT----VFDNYSAPFTVDGIPVSLGLWDTAGQE 65
++ G GKT +L TTDS V D + T+ P +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPG----HVKLRYK 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-----PIILVGTKI 120
D L+ + + + S V P +++ ++ + I++ K
Sbjct: 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKS 121
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+L R + ++ E + + + +++ +E + D
Sbjct: 122 ELFTARP-----PSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 169
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 36.6 bits (83), Expect = 6e-04
Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 27/175 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYT------TDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLW 59
+K V+ G GK+ +L + G + + + I +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTK 119
+ E R + ++ + + + W + PI +V K
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
D+ + + +++ + SA T G+ + +
Sbjct: 122 ADITGETLGM--------------------SEVNGHALIRLSARTGEGVDVLRNH 156
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 34.3 bits (77), Expect = 0.005
Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 4/176 (2%)
Query: 5 RPIKCVVVGDGTVGKTCML--ISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
IK +VG VGK+ + I + T D +DG DTA
Sbjct: 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV--FVDTA 64
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
G R+ P + + + + S+ V + A ++ + +
Sbjct: 65 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV 124
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
+ ++ + + ++ I + SA + ++ D A
Sbjct: 125 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.4 bits (73), Expect = 0.031
Identities = 22/160 (13%), Positives = 35/160 (21%), Gaps = 22/160 (13%)
Query: 6 PIKCVVVGDGTVGKTCMLISYT------TDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLW 59
+ V G+ GK+ + + + V + + V W
Sbjct: 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVV---FW 112
Query: 60 DTAG----QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIIL 115
D G D F I S D +
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI---DIAKAISMM--KKEFYF 167
Query: 116 VGTKIDL----REDRETLNLLSEQNLSPVKREQGQKLANK 151
V TK+D D E E+ L ++
Sbjct: 168 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 207
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 31.3 bits (69), Expect = 0.047
Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 16/177 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYT-------TDSFPGEYVPTVFDNYSAPFTVDGIPVSLG 57
I+ G GK+ L + T T PG + + +P
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+ + Y + L V+ + ++++
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
TK D L+ + + V+ S+L ++G+ ++ +
Sbjct: 135 TKADKLASGARKAQLNMVR---------EAVLAFNGDVQVETFSSLKKQGVDKLRQK 182
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 29.2 bits (65), Expect = 0.22
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 43 YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYP 102
+A D G DY + D ++ VV+ + ++ +
Sbjct: 55 NAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCIL---VVAANDGPMPQTREHL 111
Query: 103 ELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162
L +++ K D +D E + L+ + RE + K + SA
Sbjct: 112 LLARQIGVEHVVVYVNKADAVQDSEMVELVELE-----IRELLTEFGYKGEETPIIVGSA 166
Query: 163 LT 164
L
Sbjct: 167 LC 168
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.6 bits (62), Expect = 0.33
Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 23/180 (12%)
Query: 10 VVVGDGTVGKTCMLISYT------TDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
+VG VGK+ +L + P + + + GL
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
+ + DV + + V LK PI+LVG K+D
Sbjct: 69 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
+ E E + + + SAL +R + ++ + + + PE
Sbjct: 129 KYPE---------------EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM--PE 171
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 28.1 bits (62), Expect = 0.40
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 7 IKCVVVGDGTVGKTC-------------MLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP 53
+K VG G VG T L+ D GE + +A
Sbjct: 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEA--MDLAHAAAGIDKYPKI 58
Query: 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI 113
V + + + + + ++ + P++ I
Sbjct: 59 VGGADYSLLKGSEIIVV-TAGLARKPGMTRL---DLAHKNAGIIKDIAKKIVENAPESKI 114
Query: 114 ILVGTKIDL 122
++V +D+
Sbjct: 115 LVVTNPMDV 123
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 26.8 bits (58), Expect = 1.6
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 99 KWYPELKHHCPDAPIILVGTKIDLRE 124
+W PE + P P+ +DL E
Sbjct: 215 RWAPEYPSYAPKDPV------VDLEE 234
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.5 bits (57), Expect = 1.9
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 14/158 (8%)
Query: 7 IKCVVVGDGTVGKTCML--ISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG- 63
++ V+VG VGK+ +L + + + T D S + GI + DTAG
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFR--IVDTAGV 58
Query: 64 -------QEDYDRLRPLS-YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIIL 115
E R L + D+ L SP ++ + K + +
Sbjct: 59 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVD 118
Query: 116 VGTKIDLREDRETLNLLSEQ-NLSPVKREQGQKLANKI 152
V KI+ E + L +S +K E +KL I
Sbjct: 119 VVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 156
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 214
Score = 26.4 bits (58), Expect = 2.0
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 10/121 (8%)
Query: 11 VVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL 70
+ V + YT E +++ Y F + + G+
Sbjct: 73 MKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDF-RQFLHIYSQDVACYGEN--LAY 129
Query: 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130
P + + F+ VS +SFD + AP+ +G K + D+ +
Sbjct: 130 FPKGFIENMFFVSANPWVSFTSFDLNVA------NMDNFFAPVFTMG-KYYTQGDKVLMP 182
Query: 131 L 131
L
Sbjct: 183 L 183
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 25.7 bits (56), Expect = 2.4
Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 16/127 (12%)
Query: 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVD--GIPVSLGLWDTAG 63
P K V+G G VG T + + + +D G
Sbjct: 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG 60
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFD---------NVTSKWYPELKHHCPDAPII 114
+D + R D+ +I N+ P L P+A +
Sbjct: 61 SDDPEICR-----DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 115
Query: 115 LVGTKID 121
L+ +D
Sbjct: 116 LITNPVD 122
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.3 bits (57), Expect = 2.5
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 17/137 (12%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYT------TDSFPGE-----YVPTVFDNYSAPFTVDGIP 53
+ +V+G G VGK+ + S F E V ++
Sbjct: 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL 90
Query: 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-- 111
+ G + +++ + DN+ +
Sbjct: 91 IEGGYINDMALNIIKSFLLDKTIDVLLYVD---RLDAYRVDNLDKLVAKAITDSFGKGIW 147
Query: 112 -PIILVGTKIDLREDRE 127
I+ T
Sbjct: 148 NKAIVALTHAQFSPPDG 164
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 25.0 bits (54), Expect = 5.1
Identities = 17/141 (12%), Positives = 37/141 (26%), Gaps = 32/141 (22%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLIS---------YTTDSFPGEYVPTVFD-NYSAPFTVD 50
M + + VV+G G VG + + D+ + + D N+ F
Sbjct: 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPK 60
Query: 51 GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN---------VTSKWY 101
+ + G +D D+ +IC +
Sbjct: 61 PVDIWHGDYDDCR-------------DADLVVICAGANQKPGETRLDLVDKNIAIFRSIV 107
Query: 102 PELKHHCPDAPIILVGTKIDL 122
+ ++ +D+
Sbjct: 108 ESVMASGFQGLFLVATNPVDI 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 742,356
Number of extensions: 33275
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 75
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)