BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10444
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HXP|A Chain A, Nucleotide Transferase
pdb|1HXP|B Chain B, Nucleotide Transferase
Length = 348
Score = 297 bits (760), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 139/291 (47%), Positives = 184/291 (63%), Gaps = 18/291 (6%)
Query: 49 EHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNP 108
+H H RYNPL G+WILVSPHR KRPW G +E + + DP LC R G+ NP
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWEGAQETPAKQVLPAHDPDCFLCAGNVRVTGDKNP 67
Query: 109 NYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEI 168
+Y +VF NDF AL+ + P P DPL + +A G +VICF P + TLP +S+ +
Sbjct: 68 DYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 127
Query: 169 RKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQR 228
+++ TW ++TA LGKTY WVQ+FENKGA MGCSNPHPH Q+WA+SFLPN +D Q+
Sbjct: 128 TEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAEREDRLQK 187
Query: 229 EYYQTHGKPLLMDYVSKELL-KRKQPTSVAVWLKELLKXXXXXXXXXXXXXXXXFWAEWP 287
EY+ P+L+DYV +EL + WL + +WA WP
Sbjct: 188 EYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVV-----------------PYWAAWP 230
Query: 288 FETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 338
FET++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 231 FETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 281
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 41/48 (85%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 48
++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 234 LLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 281
>pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 297 bits (760), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 139/291 (47%), Positives = 184/291 (63%), Gaps = 18/291 (6%)
Query: 49 EHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNP 108
+H H RYNPL G+WILVSPHR KRPW G +E + + DP LC R G+ NP
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDKNP 67
Query: 109 NYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEI 168
+Y +VF NDF AL+ + P P DPL + +A G +VICF P + TLP +S+ +
Sbjct: 68 DYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 127
Query: 169 RKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQR 228
+++ TW ++TA LGKTY WVQ+FENKGA MGCSNPHPH Q+WA+SFLPN +D Q+
Sbjct: 128 TEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAEREDRLQK 187
Query: 229 EYYQTHGKPLLMDYVSKELL-KRKQPTSVAVWLKELLKXXXXXXXXXXXXXXXXFWAEWP 287
EY+ P+L+DYV +EL + WL + +WA WP
Sbjct: 188 EYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVV-----------------PYWAAWP 230
Query: 288 FETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 338
FET++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 231 FETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 281
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 41/48 (85%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 48
++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 234 LLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 281
>pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|B Chain B, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|C Chain C, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|D Chain D, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUQ|A Chain A, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|B Chain B, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|C Chain C, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|D Chain D, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
Length = 348
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 138/291 (47%), Positives = 183/291 (62%), Gaps = 18/291 (6%)
Query: 49 EHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNP 108
+H H RYNPL G+WILVSPHR KRPW G +E + + DP LC R G+ NP
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDKNP 67
Query: 109 NYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEI 168
+Y +VF NDF AL+ + P P DPL + +A G +VICF P + TLP +S+ +
Sbjct: 68 DYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 127
Query: 169 RKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQR 228
+++ TW ++TA LGKTY WVQ+FENKGA MGCSNPHP Q+WA+SFLPN +D Q+
Sbjct: 128 TEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWANSFLPNEAEREDRLQK 187
Query: 229 EYYQTHGKPLLMDYVSKELL-KRKQPTSVAVWLKELLKXXXXXXXXXXXXXXXXFWAEWP 287
EY+ P+L+DYV +EL + WL + +WA WP
Sbjct: 188 EYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVV-----------------PYWAAWP 230
Query: 288 FETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 338
FET++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 231 FETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 281
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 41/48 (85%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 48
++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 234 LLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 281
>pdb|1Z84|A Chain A, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1Z84|B Chain B, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1ZWJ|A Chain A, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1ZWJ|B Chain B, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|2Q4H|A Chain A, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4H|B Chain B, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4L|A Chain A, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4L|B Chain B, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
Length = 351
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 38/282 (13%)
Query: 53 VRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNPNYDS 112
+R +P+ W++ SP R KRP + + KS ++P +PK CP E P
Sbjct: 25 LRKDPVTNRWVIFSPARAKRP-TDFKSKSPQNP----NPKPSSCPFCIGREQECAPELFR 79
Query: 113 V---------FVFNNDFPALLENVPSPPVQ-DDPLFKMGNASGVCKVICFHPKSNTTLPI 162
V V N +PAL N+ + Q + + G V+ P + L
Sbjct: 80 VPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSD 139
Query: 163 MSIEEIRKVIDTWVDETASLGK--TYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLP 220
+ I ++ + + + + ++Q+F+N+GA G S H H Q+ A +P
Sbjct: 140 IDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTV 199
Query: 221 RIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKXXXXXXXXXXXXXXX 280
+ ++Y++ GK L + SK + + V+V
Sbjct: 200 SSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSV---------------------A 238
Query: 281 XFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTK 322
F A +PFE I+P+ H F LDD + +L ++K + K
Sbjct: 239 PFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQK 280
>pdb|2H39|A Chain A, Crystal Structure Of An Adp-Glucose Phosphorylase From
Arabidopsis Thaliana With Bound Adp-Glucose
pdb|2H39|B Chain B, Crystal Structure Of An Adp-Glucose Phosphorylase From
Arabidopsis Thaliana With Bound Adp-Glucose
Length = 351
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 38/282 (13%)
Query: 53 VRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNPNYDS 112
+R +P+ W++ SP R KRP + + KS ++P +PK CP E P
Sbjct: 25 LRKDPVTNRWVIFSPARAKRP-TDFKSKSPQNP----NPKPSSCPFCIGREQECAPELFR 79
Query: 113 V---------FVFNNDFPALLENVPSPPVQ-DDPLFKMGNASGVCKVICFHPKSNTTLPI 162
V V N +PAL N+ + Q + + G V+ P + L
Sbjct: 80 VPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSD 139
Query: 163 MSIEEIRKVIDTWVDETASLGK--TYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLP 220
+ I ++ + + + + ++Q+F+N+GA G S H Q+ A +P
Sbjct: 140 IDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSGSQMMALPVVPPTV 199
Query: 221 RIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKXXXXXXXXXXXXXXX 280
+ ++Y++ GK L + SK + + V+V
Sbjct: 200 SSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSV---------------------A 238
Query: 281 XFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTK 322
F A +PFE I+P+ H F LDD + +L ++K + K
Sbjct: 239 PFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQK 280
>pdb|3QPF|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QPF|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QRY|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QRY|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QSP|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
pdb|3QSP|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
Length = 426
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 169 RKVIDTWVDETASLGKTY-EWVQIFE 193
++++ W+DE A K Y EWV +FE
Sbjct: 5 KEIVREWLDEVAERAKDYPEWVDVFE 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,014,686
Number of Sequences: 62578
Number of extensions: 462180
Number of successful extensions: 1241
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 19
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)