Query psy10444
Match_columns 341
No_of_seqs 269 out of 1786
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:19:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00209 galT_1 galactose-1-p 100.0 1.4E-86 3E-91 648.6 31.3 277 48-340 7-283 (347)
2 PRK11720 galactose-1-phosphate 100.0 8.4E-86 1.8E-90 643.0 30.6 277 48-340 7-283 (346)
3 PLN02643 ADP-glucose phosphory 100.0 9.7E-83 2.1E-87 619.8 28.9 267 50-340 1-281 (336)
4 cd00608 GalT Galactose-1-phosp 100.0 3.5E-82 7.6E-87 615.0 30.2 270 52-340 1-273 (329)
5 KOG2958|consensus 100.0 2.2E-81 4.8E-86 581.1 24.2 278 47-340 8-288 (354)
6 COG1085 GalT Galactose-1-phosp 100.0 5.3E-77 1.2E-81 571.3 25.7 273 50-341 1-275 (338)
7 PF01087 GalP_UDP_transf: Gala 100.0 2E-49 4.3E-54 356.1 12.9 168 49-217 10-183 (183)
8 PF02744 GalP_UDP_tr_C: Galact 99.9 3.3E-26 7.1E-31 202.6 10.1 101 224-340 1-102 (166)
9 cd01278 aprataxin_related apra 99.8 4.7E-20 1E-24 150.3 9.6 89 236-340 1-90 (104)
10 cd01277 HINT_subgroup HINT (hi 99.8 6.9E-20 1.5E-24 148.4 9.6 86 236-340 1-86 (103)
11 cd01276 PKCI_related Protein K 99.8 2.5E-19 5.5E-24 145.7 8.5 86 236-340 1-87 (104)
12 cd01275 FHIT FHIT (fragile his 99.7 4.6E-18 1E-22 143.5 9.7 86 237-340 1-86 (126)
13 COG0537 Hit Diadenosine tetrap 99.6 1.7E-15 3.7E-20 130.4 9.6 86 236-340 2-87 (138)
14 PRK10687 purine nucleoside pho 99.6 2.4E-15 5.2E-20 126.4 9.2 86 235-339 3-89 (119)
15 cd00468 HIT_like HIT family: H 99.5 6.7E-14 1.5E-18 109.3 8.4 70 270-340 1-70 (86)
16 PF01230 HIT: HIT domain; Int 99.4 1.6E-12 3.4E-17 104.9 8.7 75 264-339 3-77 (98)
17 KOG3275|consensus 99.3 3.1E-12 6.8E-17 105.3 7.4 86 234-341 15-103 (127)
18 KOG2958|consensus 99.1 2.2E-11 4.7E-16 114.7 3.5 51 1-51 239-289 (354)
19 PF02744 GalP_UDP_tr_C: Galact 99.1 3.5E-11 7.7E-16 106.7 2.8 48 1-48 53-100 (166)
20 PF11969 DcpS_C: Scavenger mRN 99.0 1.9E-10 4.1E-15 96.2 4.8 86 236-339 1-90 (116)
21 cd00468 HIT_like HIT family: H 99.0 7.4E-10 1.6E-14 86.3 7.7 78 112-211 6-85 (86)
22 COG1085 GalT Galactose-1-phosp 98.8 4E-09 8.7E-14 102.5 3.8 48 1-48 225-272 (338)
23 TIGR00209 galT_1 galactose-1-p 98.6 3E-08 6.4E-13 97.7 4.8 58 1-58 234-302 (347)
24 PRK11720 galactose-1-phosphate 98.6 5.6E-08 1.2E-12 95.7 4.9 57 1-57 234-301 (346)
25 PLN02643 ADP-glucose phosphory 98.5 1.2E-07 2.7E-12 93.0 4.5 47 1-48 233-279 (336)
26 KOG3379|consensus 98.5 8.9E-07 1.9E-11 75.3 8.9 72 265-337 15-86 (150)
27 cd00608 GalT Galactose-1-phosp 98.4 1.3E-07 2.7E-12 92.6 3.8 48 1-48 224-271 (329)
28 cd01277 HINT_subgroup HINT (hi 98.3 5E-07 1.1E-11 72.8 3.7 45 1-46 38-82 (103)
29 KOG4359|consensus 98.1 9.7E-06 2.1E-10 69.2 6.5 91 233-339 29-120 (166)
30 cd01275 FHIT FHIT (fragile his 98.0 2.2E-05 4.8E-10 66.0 8.3 96 93-212 1-102 (126)
31 PRK10687 purine nucleoside pho 97.8 6.4E-05 1.4E-09 63.2 7.6 101 91-214 3-108 (119)
32 PF04677 CwfJ_C_1: Protein sim 97.8 8.6E-05 1.9E-09 62.7 8.2 61 265-325 23-83 (121)
33 cd01278 aprataxin_related apra 97.7 3.2E-05 7E-10 62.7 3.7 51 1-51 40-91 (104)
34 cd01276 PKCI_related Protein K 97.6 0.0003 6.6E-09 56.8 8.5 98 92-212 1-103 (104)
35 COG4360 APA2 ATP adenylyltrans 97.6 0.00011 2.3E-09 68.3 6.4 86 114-232 95-180 (298)
36 PF01230 HIT: HIT domain; Int 97.5 0.0005 1.1E-08 55.1 7.3 79 112-212 14-94 (98)
37 COG0537 Hit Diadenosine tetrap 96.8 0.0058 1.3E-07 52.6 7.9 98 92-212 2-103 (138)
38 KOG2476|consensus 95.7 0.034 7.4E-07 56.4 7.6 63 265-328 331-393 (528)
39 PF04677 CwfJ_C_1: Protein sim 92.5 0.9 1.9E-05 38.3 8.5 62 146-213 46-108 (121)
40 KOG2477|consensus 87.9 2.4 5.2E-05 43.9 8.4 61 265-325 419-480 (628)
41 KOG3379|consensus 86.5 2.7 6E-05 36.3 6.7 78 112-211 25-104 (150)
42 KOG0562|consensus 83.9 1.1 2.3E-05 40.0 3.1 75 264-339 12-91 (184)
43 KOG4359|consensus 81.8 4.6 0.0001 35.0 6.1 99 90-212 30-135 (166)
44 PF03470 zf-XS: XS zinc finger 77.1 1.1 2.5E-05 31.0 0.9 8 93-100 1-8 (43)
45 PF11969 DcpS_C: Scavenger mRN 75.9 9.7 0.00021 31.5 6.4 85 112-221 22-112 (116)
46 PF12239 DUF3605: Protein of u 63.6 25 0.00055 31.0 6.6 75 112-207 73-154 (158)
47 PF14354 Lar_restr_allev: Rest 49.0 9.9 0.00021 27.5 1.3 8 92-100 5-12 (61)
48 KOG3275|consensus 45.8 51 0.0011 27.9 5.1 63 146-212 51-118 (127)
49 KOG0562|consensus 45.7 30 0.00064 31.0 3.9 97 111-244 23-131 (184)
50 PLN03103 GDP-L-galactose-hexos 43.2 60 0.0013 33.0 6.2 59 272-339 167-225 (403)
51 KOG2476|consensus 42.6 1.1E+02 0.0025 31.7 8.0 73 146-226 353-426 (528)
52 PTZ00134 40S ribosomal protein 41.8 26 0.00057 30.9 3.0 43 11-65 58-100 (154)
53 PRK02079 pyrroloquinoline quin 39.8 18 0.00039 28.8 1.6 24 50-73 11-34 (88)
54 TIGR03793 TOMM_pelo TOMM prope 34.3 47 0.001 25.8 3.1 24 287-313 52-75 (77)
55 COG3195 Uncharacterized protei 33.1 46 0.001 29.8 3.2 31 10-46 97-127 (176)
56 TIGR03655 anti_R_Lar restricti 29.3 29 0.00062 24.7 1.1 10 92-101 3-12 (53)
57 PF04134 DUF393: Protein of un 28.3 18 0.0004 29.1 -0.2 12 89-100 3-14 (114)
58 PF14317 YcxB: YcxB-like prote 28.1 98 0.0021 21.3 3.7 38 270-317 25-62 (62)
59 PF11314 DUF3117: Protein of u 27.0 36 0.00077 24.2 1.1 19 12-30 33-51 (51)
60 PLN03103 GDP-L-galactose-hexos 25.7 2E+02 0.0044 29.3 6.7 28 186-214 216-243 (403)
61 PF11950 DUF3467: Protein of u 25.0 1.9E+02 0.0041 23.0 5.2 56 266-328 30-88 (92)
62 TIGR03859 PQQ_PqqD coenzyme PQ 21.1 68 0.0015 24.8 1.9 21 50-70 6-26 (81)
63 PF10372 YojJ: Bacterial membr 20.1 82 0.0018 24.1 2.0 23 220-242 22-44 (70)
No 1
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=100.00 E-value=1.4e-86 Score=648.65 Aligned_cols=277 Identities=54% Similarity=1.065 Sum_probs=257.3
Q ss_pred ccccceeecccCCcEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeCCCCccccCC
Q psy10444 48 HEHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNPNYDSVFVFNNDFPALLENV 127 (341)
Q Consensus 48 ~~~~~~r~~pl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPFCpg~e~~~~~~~~~~~~vrvfpN~fPal~~~~ 127 (341)
..++|+|+|||||+|||||++|++|||+++.++...+..+.+++.||||||||+.+++++++|..+|||+||||||+++.
T Consensus 7 ~~~~~~R~dplt~~wViia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~~~~~~~~w~~~rV~~N~fPal~~~~ 86 (347)
T TIGR00209 7 VDHPHRRYNPLTDQWILVSPHRAKRPWQGQQETPAKQVLPAYDPDCYLCPGNKRVTGDLNPDYTGTYVFTNDFAALMSDT 86 (347)
T ss_pred CCCCeeeeCCCCCcEEEEeCCcccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCcCCCCceEEEEeCCCcccccCC
Confidence 45789999999999999999999999998755433333444567899999999998888777646999999999999887
Q ss_pred CCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhccCCceEEEeeecCcCCCCCCCccc
Q psy10444 128 PSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPHPH 207 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~~~i~Yv~iFkN~G~~aGaSl~HPH 207 (341)
+.+....+|+|++++|+|+||||||||+|+.+|++|+.+||..||++|++|+++|+++++||+||||+|+.|||||+|||
T Consensus 87 ~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH 166 (347)
T TIGR00209 87 PDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPH 166 (347)
T ss_pred CCCCcCCCcccccCCCCeeEEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCc
Confidence 66544446799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCChHHHHHHHHHHHHHhcCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCC
Q psy10444 208 CQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWP 287 (341)
Q Consensus 208 sQiia~p~vP~~~~~el~~~~~y~~~~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p 287 (341)
|||||+|+||+.++.|++++++||+++|+|+||+|+++|+ ..++|+|++|++|+||+|++|++|
T Consensus 167 ~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~----------------~~~~riV~End~fvAf~p~~p~~P 230 (347)
T TIGR00209 167 GQIWANSFLPNEVEREDRLQKEYFAEHKSPMLVDYVKREL----------------ADKSRTVVETEHWIAVVPYWAIWP 230 (347)
T ss_pred eeeeeCCCCChHHHHHHHHHHHHHHHcCCccHHHHHHhHh----------------hcCCeEEEECCCEEEEeccCCCCC
Confidence 9999999999999999999999999999999999999998 668999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 288 FETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 288 ~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
||+||+||+|+++|.+|+++++.+|++++++++++|+++|+.++|||||||++
T Consensus 231 gh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~ 283 (347)
T TIGR00209 231 FETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGA 283 (347)
T ss_pred CeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEec
Confidence 99999999999999999999999999999999999999998799999999996
No 2
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=100.00 E-value=8.4e-86 Score=642.96 Aligned_cols=277 Identities=56% Similarity=1.113 Sum_probs=255.1
Q ss_pred ccccceeecccCCcEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeCCCCccccCC
Q psy10444 48 HEHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNPNYDSVFVFNNDFPALLENV 127 (341)
Q Consensus 48 ~~~~~~r~~pl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPFCpg~e~~~~~~~~~~~~vrvfpN~fPal~~~~ 127 (341)
..++|+|+|||||+|||||++|++|||+++.+++..+..+.+++.||||||||+.+++.+++|+.+|||+||||||+++.
T Consensus 7 ~~~~~~R~dpl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~t~~~~~~w~~~rv~~N~fPal~~~~ 86 (346)
T PRK11720 7 VDHPHRRYNPLTGQWVLVSPHRAKRPWQGQQETPAKETLPAYDPDCFLCPGNTRVTGDVNPDYTGTYVFTNDFAALMPDT 86 (346)
T ss_pred CCCCeeeeCCCCCcEEEEcCCccCCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEcCCCchhccCC
Confidence 46899999999999999999999999998744332222344567899999999988876777645999999999999887
Q ss_pred CCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhccCCceEEEeeecCcCCCCCCCccc
Q psy10444 128 PSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPHPH 207 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~~~i~Yv~iFkN~G~~aGaSl~HPH 207 (341)
+......+|+|++++|+|+||||||||+|+.+|++|+.++|..+|++|++|+++|++.++||+||||+|+.|||||.|||
T Consensus 87 ~~~~~~~~~l~~~~~~~G~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH 166 (346)
T PRK11720 87 PDAPESDDPLFRCQSARGTSRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPH 166 (346)
T ss_pred CCCCcccCcccccCccceEEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCc
Confidence 66544436799999999999999999999999999999999999999999999998779999999999999999999999
Q ss_pred cceeecCCCCChHHHHHHHHHHHHHhcCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCC
Q psy10444 208 CQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWP 287 (341)
Q Consensus 208 sQiia~p~vP~~~~~el~~~~~y~~~~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p 287 (341)
|||||+|++|+.++++++++++||+++|+|+||+|+++|+ ..++|+|++|++|+||+|++|++|
T Consensus 167 ~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~Clfcdii~~E~----------------~~~~RiV~End~fvAf~p~~p~~P 230 (346)
T PRK11720 167 GQIWANSFLPNEAEREDRLQRAYFAEHGSPLLVDYVQREL----------------ADGERIVVETEHWLAVVPYWAAWP 230 (346)
T ss_pred eeeeeCCCCChHHHHHHHHHHHHHHHcCCeEHHHHHHhhh----------------hcCCeEEEECCCEEEEeccccCCC
Confidence 9999999999999999999999999999999999999998 557899999999999999999999
Q ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 288 FETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 288 ~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
||+||+||+|+.+|.+|+++++.+||+++++++++|+++|+.++|||||||++
T Consensus 231 ~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~ 283 (346)
T PRK11720 231 FETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGA 283 (346)
T ss_pred CeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEec
Confidence 99999999999999999999999999999999999999998799999999996
No 3
>PLN02643 ADP-glucose phosphorylase
Probab=100.00 E-value=9.7e-83 Score=619.75 Aligned_cols=267 Identities=25% Similarity=0.452 Sum_probs=240.3
Q ss_pred ccceeecccCCcEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCceeeeeCCC
Q psy10444 50 HQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGE---------VNPNYDSVFVFNNDF 120 (341)
Q Consensus 50 ~~~~r~~pl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPFCpg~e~~~~~---------~~~~~~~vrvfpN~f 120 (341)
|+|+|+|||||+|||||++|++|||+++.+.... +++..++.||||||||+.+++ .+++| +||||+|||
T Consensus 1 m~e~R~dplt~~wViia~~R~~RP~~~~~~~~~~-~~~~~~~~CPfCpgne~~t~~ei~~~~~~~~~~~w-~vrv~~N~f 78 (336)
T PLN02643 1 MAELRKDPVTNRWVIFSPARGKRPTDFKSKSPQN-PNGNHSSGCPFCIGHEHECAPEIFRVPDDASAPDW-KVRVIENLY 78 (336)
T ss_pred CCccccCCCCCCEEEEcCCcccCCCCCcccCCcC-CCCCCCCCCCCCCCCCCCCCcceeeccCCCCCCCC-eEEEEeCCC
Confidence 6799999999999999999999999985433322 334456789999999998864 24555 799999999
Q ss_pred CccccCCCCCCCCCCc-c--ccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc--cCCceEEEeeec
Q psy10444 121 PALLENVPSPPVQDDP-L--FKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG--KTYEWVQIFENK 195 (341)
Q Consensus 121 Pal~~~~~~~~~~~~~-~--~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~--~~i~Yv~iFkN~ 195 (341)
|||+++.+.....++| + +++++|+|+||||||||+|+.+|++|+.++|..+|++|++|+++|+ ++++||+||||+
T Consensus 79 Pal~~~~~~~~~~~~~~~~~~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~ 158 (336)
T PLN02643 79 PALSRDLEPPCTEGQGEDYGGRRLPGFGFHDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNH 158 (336)
T ss_pred ccccCCCCCCcccccCcchhhcccceeeEEEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 9999877655422233 3 4599999999999999999999999999999999999999999996 579999999999
Q ss_pred CcCCCCCCCccccceeecCCCCChHHHHHHHHHHHHHhcCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCc
Q psy10444 196 GAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPD 275 (341)
Q Consensus 196 G~~aGaSl~HPHsQiia~p~vP~~~~~el~~~~~y~~~~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~ 275 (341)
|+.|||||.||||||||+|+||+.++++++++++||+++|+|+||+|+++| .+|++|++
T Consensus 159 G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~~~~y~~~~g~Clfcdii~~E---------------------~iV~en~~ 217 (336)
T PLN02643 159 GASAGASMSHSHSQIIALPVVPPSVSARLDGSKEYFEKTGKCSLCEVVKKD---------------------LLIDESSH 217 (336)
T ss_pred CccCCcCCCCCceeeEecCcCChHHHHHHHHHHHHHHHhCCCcHHHHHhCc---------------------cEEEeCCC
Confidence 999999999999999999999999999999999999999999999998643 29999999
Q ss_pred EEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 276 WVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 276 ~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
|+||+|++|++||||||+||+|+++|.+|+++++.+||+++++++++|+++|+.+ ||||+||++
T Consensus 218 f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~-pyN~~~~~~ 281 (336)
T PLN02643 218 FVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDP-PYNYMIQTS 281 (336)
T ss_pred EEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeecC
Confidence 9999999999999999999999999999999999999999999999999999755 999999996
No 4
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=100.00 E-value=3.5e-82 Score=615.04 Aligned_cols=270 Identities=55% Similarity=1.039 Sum_probs=249.7
Q ss_pred ceeecccCCcEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCceeeeeCCCCccccCCCCC
Q psy10444 52 HVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRG-NGEVNPNYDSVFVFNNDFPALLENVPSP 130 (341)
Q Consensus 52 ~~r~~pl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPFCpg~e~~-~~~~~~~~~~vrvfpN~fPal~~~~~~~ 130 (341)
|+|+|||||+|||||++|++|||+++.+.+. ..+.+++.|||||||++. ++..+++| +||||+||||||+++.+.+
T Consensus 1 e~R~dpl~~~wvi~a~~R~~Rp~~~~~~~~~--~~~~~~~~CPfCpg~~~~~~~~~~~~w-~~~v~~N~fPal~~~~~~~ 77 (329)
T cd00608 1 HRRYNPLTGEWVLVSPHRAKRPWQGQQEAPK--KLPEYDPDCPLCPGNERADTGEQNPDY-DVRVFENDFPALKPDAPAP 77 (329)
T ss_pred CcccCCCCCcEEEEcCcccCCCCCCcccccc--cccCCCCCCCcCCCCCCCCCCCCCCCC-eEEEECCCCccccCCCCCC
Confidence 6899999999999999999999998543211 134566789999999986 56566776 7999999999999877655
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc--cCCceEEEeeecCcCCCCCCCcccc
Q psy10444 131 PVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG--KTYEWVQIFENKGAIMGCSNPHPHC 208 (341)
Q Consensus 131 ~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~--~~i~Yv~iFkN~G~~aGaSl~HPHs 208 (341)
...++++|++++|+|+|+||||||+|+.+|++|+.++|..+|.+|++|+++|. ++++||+||||+|+.|||||.||||
T Consensus 78 ~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~ 157 (329)
T cd00608 78 EDSDDGLFRTAPARGRCEVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHG 157 (329)
T ss_pred cccCCcccccCCcceeEEEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCe
Confidence 44446899999999999999999999999999999999999999999999997 7999999999999999999999999
Q ss_pred ceeecCCCCChHHHHHHHHHHHHHhcCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCc
Q psy10444 209 QVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPF 288 (341)
Q Consensus 209 Qiia~p~vP~~~~~el~~~~~y~~~~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~ 288 (341)
||||+|++|+.++++++++++||+++|+|+||+|+++|+ ..+.|+|++|++|+||+|++|+|||
T Consensus 158 Qi~a~~~vp~~~~~e~~~~~~y~~~~g~clfcdii~~E~----------------~~~~riV~end~~va~~p~~~~~P~ 221 (329)
T cd00608 158 QIWALPFLPPEVARELRNQKAYYEKHGRCLLCDYLKLEL----------------ESKERIVVENEHFVAVVPFWARWPF 221 (329)
T ss_pred eeeeCCcCChHHHHHHHHHHHHHHHcCCccHHHHHHhhh----------------hcCCeEEEeCCCEEEEEecCCCCCc
Confidence 999999999999999999999999999999999999988 5679999999999999999999999
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 289 ETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 289 e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
|+||+||+|+.+|.+|+++++.+||+++++++++|++++++++||||+||++
T Consensus 222 e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~ 273 (329)
T cd00608 222 EVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQA 273 (329)
T ss_pred EEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecc
Confidence 9999999999999999999999999999999999999997789999999986
No 5
>KOG2958|consensus
Probab=100.00 E-value=2.2e-81 Score=581.09 Aligned_cols=278 Identities=53% Similarity=1.026 Sum_probs=264.2
Q ss_pred cccccceeecccCCcEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeCCCCccccC
Q psy10444 47 FHEHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNPNYDSVFVFNNDFPALLEN 126 (341)
Q Consensus 47 ~~~~~~~r~~pl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPFCpg~e~~~~~~~~~~~~vrvfpN~fPal~~~ 126 (341)
.+.++|+||||||++|||+||+|+||||+|+.+.....+.+.+|+.|||||||++++|..+|+|..+.||+|+||||+.+
T Consensus 8 ~~q~~hrRynPltd~wVlvSphRakRPwqg~~e~~~~~~~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d 87 (354)
T KOG2958|consen 8 FNQHSHRRYNPLTDEWVLVSPHRAKRPWQGQKEPQNKNTTPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRD 87 (354)
T ss_pred cccCchhccCCccceeEEechhhccCCcccccCccCCCCCCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccC
Confidence 34689999999999999999999999999977766555667789999999999999999999999999999999999988
Q ss_pred CCCCCCCC-CccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc--cCCceEEEeeecCcCCCCCC
Q psy10444 127 VPSPPVQD-DPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG--KTYEWVQIFENKGAIMGCSN 203 (341)
Q Consensus 127 ~~~~~~~~-~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~--~~i~Yv~iFkN~G~~aGaSl 203 (341)
.+.+..++ .+++++..+.|.|.||||+|+|+.+|..|++.+|..|+.+|+.++.+|+ ..++|||||||+|+.||||+
T Consensus 88 ~p~~~~~~~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~m~~~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn 167 (354)
T KOG2958|consen 88 QPTQGQDESTGLFKTISVKGVCKVICFSPNHNLTLPLMDVVEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSN 167 (354)
T ss_pred CCCCCCCCCccchhheeecceeEEEEeCCccccccccCCHHHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCC
Confidence 77665443 4699999999999999999999999999999999999999999999998 79999999999999999999
Q ss_pred CccccceeecCCCCChHHHHHHHHHHHHHhcCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCC
Q psy10444 204 PHPHCQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFW 283 (341)
Q Consensus 204 ~HPHsQiia~p~vP~~~~~el~~~~~y~~~~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~ 283 (341)
+|||+|+||++++|+.+.+++++.++||+++|.|++.||++.|. .+++|||.+|++|++++|||
T Consensus 168 ~HpHgQ~wal~~lP~~vs~e~~s~kkyfe~hgk~ll~dy~~~E~----------------l~Kervv~enehfivvvPyw 231 (354)
T KOG2958|consen 168 PHPHGQAWALPVLPSTVSQELDSQKKYFEEHGKCLLMDYVKQEA----------------LEKERVVVENEHFIVVVPYW 231 (354)
T ss_pred CCcccceeecccCCcHHHHHhhhHHHHHHHcCCchHHHHHHHHH----------------hhhceEEeecCceEEEeehh
Confidence 99999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred CCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 284 AEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 284 ~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
+.||||||+|||+|+++|.+|++.+..|||.+|+.++.+||++|+++||||||||+|
T Consensus 232 A~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~a 288 (354)
T KOG2958|consen 232 ATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGA 288 (354)
T ss_pred hcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccC
Confidence 999999999999999999999999999999999999999999999999999999997
No 6
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=100.00 E-value=5.3e-77 Score=571.30 Aligned_cols=273 Identities=47% Similarity=0.852 Sum_probs=256.2
Q ss_pred ccceeecccCCcEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeCCCCccccCCCC
Q psy10444 50 HQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNPNYDSVFVFNNDFPALLENVPS 129 (341)
Q Consensus 50 ~~~~r~~pl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPFCpg~e~~~~~~~~~~~~vrvfpN~fPal~~~~~~ 129 (341)
|+|+|+|||||+||||+++|++|||+++.+...+.. .+++.|||||||++.| ..++.+|.++||||+||+|+.+.+.
T Consensus 1 ~~~~r~nplt~~~vlvs~~RakRP~~~~~~~~~~~~--~~~~~CpfC~gn~~~t-~~~~~~~~~~~~~N~fp~v~~d~p~ 77 (338)
T COG1085 1 MPERRYNPLTGQWVLVSPHRAKRPWQGAQEKIAEQT--DHDPTCPFCPGNERTT-EENPRYWHVRVFPNDFPAVSEDPPD 77 (338)
T ss_pred CCceeecCCCccEEEecCcccCCCccCcccccchhh--ccCCcCCccCCcceec-ccCCCCcceeecCCcchhhcCCCCC
Confidence 679999999999999999999999999876654333 5788999999999876 4677888999999999999998877
Q ss_pred CCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhccC--CceEEEeeecCcCCCCCCCccc
Q psy10444 130 PPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKT--YEWVQIFENKGAIMGCSNPHPH 207 (341)
Q Consensus 130 ~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~~~--i~Yv~iFkN~G~~aGaSl~HPH 207 (341)
.....+++|+..+|+|.|.||||||+|+.++++|+.++|..++++|++|+++|.++ ++||+||+|+|+.||||+.|||
T Consensus 78 ~~~~~~~~~~~~~~~g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH 157 (338)
T COG1085 78 APGSEDPLFKIQEARGKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPH 157 (338)
T ss_pred CCccccchhcccccCcceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCC
Confidence 54445679999999999999999999999999999999999999999999999854 9999999999999999999999
Q ss_pred cceeecCCCCChHHHHHHHHHHHHHhcCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCC
Q psy10444 208 CQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWP 287 (341)
Q Consensus 208 sQiia~p~vP~~~~~el~~~~~y~~~~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p 287 (341)
+||+|+|++|..++++++++++||+++|.|++|+|++.|. ..++|+|++|++|+||+|||++||
T Consensus 158 ~Qi~a~~~~P~~v~~e~~~~~~y~~~~~~~~~~~~ve~E~----------------~~~~R~v~e~~~~~a~~Pf~a~~p 221 (338)
T COG1085 158 GQIVALPVLPLEVARELRSAREYYEENGSCMYCDLVEREK----------------GDGERIVVENDHFLAFVPFWARWP 221 (338)
T ss_pred cceeecccCChHHHHHHHHHHHHHHhcCCchHHHHHHHHh----------------ccCceEEecCceeEEeccccccCc
Confidence 9999999999999999999999999999999999999988 678999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecCC
Q psy10444 288 FETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVCK 341 (341)
Q Consensus 288 ~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~~ 341 (341)
|||+|+||+|+..+++++|+++.+||.+|+.++++|++++++++||||++||+.
T Consensus 222 fEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap 275 (338)
T COG1085 222 FEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAP 275 (338)
T ss_pred eEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCC
Confidence 999999999999999999999999999999999999999999999999999973
No 7
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=100.00 E-value=2e-49 Score=356.08 Aligned_cols=168 Identities=39% Similarity=0.696 Sum_probs=126.4
Q ss_pred cccceeecccCCcEEEEccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCceeeeeCCCCccccCC
Q psy10444 49 EHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFD-PKNPLCPTATRGNGEVNPNYDSVFVFNNDFPALLENV 127 (341)
Q Consensus 49 ~~~~~r~~pl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~-~~CPFCpg~e~~~~~~~~~~~~vrvfpN~fPal~~~~ 127 (341)
+.+|+|+|||+|+|||||++|++||+++..... ....+..+ ..||||||+++.++...+++|++|||+|+||+|+.+.
T Consensus 10 ~~~e~R~dpl~g~~vi~a~~R~~Rp~~~~~~~~-~~~~~~~d~~~cpfcpg~e~~~~~~~~~~~~~rv~~N~fpal~~~~ 88 (183)
T PF01087_consen 10 YTSELRIDPLTGEWVIIAPERAKRPWAGENERI-KDELPSRDEPMCPFCPGNEEVNEIFNPDYWSVRVFPNKFPALSPEN 88 (183)
T ss_dssp ---EEEEETTTTCEEEE-CCGGGSCCCS-------S---SS--TT-TTSTT-CGCCCECTT-SSSEEEEE-TT-SSBCCG
T ss_pred cchhhCcHhhcCCccccCHhHhcCchhhhcccc-CCCCCCCCCCCCCcCCCCccccccccccccchhhhhccchhhCccc
Confidence 568999999999999999999999998876544 33345556 6899999999987766677789999999999999877
Q ss_pred CCCCC---CCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc--cCCceEEEeeecCcCCCCC
Q psy10444 128 PSPPV---QDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG--KTYEWVQIFENKGAIMGCS 202 (341)
Q Consensus 128 ~~~~~---~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~--~~i~Yv~iFkN~G~~aGaS 202 (341)
+.... .++++|++++|+|.|||||+||+|+.+|++||.+++..++.||++|+++|. ++++||++|||+|..||||
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~G~hEViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaS 168 (183)
T PF01087_consen 89 NYIRTDAIAKNGLFKSESGYGAHEVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGAS 168 (183)
T ss_dssp TTTHB------SSS-EEE-BEEEEEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-S
T ss_pred cCcccccccCCCcccccCCCCCeEEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCC
Confidence 65532 356899999999999999999999999999999999999999999999996 6999999999999999999
Q ss_pred CCccccceeecCCCC
Q psy10444 203 NPHPHCQVWASSFLP 217 (341)
Q Consensus 203 l~HPHsQiia~p~vP 217 (341)
|.||||||||+|++|
T Consensus 169 l~HpHsQi~a~~~vP 183 (183)
T PF01087_consen 169 LPHPHSQIIALPHVP 183 (183)
T ss_dssp SSSSEEEEEEESS--
T ss_pred CCCCceEEecCCccC
Confidence 999999999999998
No 8
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.93 E-value=3.3e-26 Score=202.64 Aligned_cols=101 Identities=44% Similarity=0.795 Sum_probs=81.0
Q ss_pred HHHHHHHHHhc-CCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCC
Q psy10444 224 DIHQREYYQTH-GKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFT 302 (341)
Q Consensus 224 l~~~~~y~~~~-g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~ 302 (341)
++++++||..+ |+|++||+++.|+ +.+.|||++|++|++|+||+++|||||||+|++|+++|.
T Consensus 1 ~~~~~~Y~~~~nGs~L~~D~~~~E~----------------~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~ 64 (166)
T PF02744_consen 1 LENFPHYFEGSNGSCLFCDHLQMEL----------------AEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLA 64 (166)
T ss_dssp HHHHHHHHHHH-SS-HHHHHHHHHH----------------HH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGG
T ss_pred CccchHHHccCCCCchHHHHHHHhh----------------cCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHH
Confidence 46789999998 9999999999998 778999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 303 DLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 303 ~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
+++++|..+||.+|+.++++|+++|++++||||||||+
T Consensus 65 ~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihqa 102 (166)
T PF02744_consen 65 DLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQA 102 (166)
T ss_dssp G--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE--
T ss_pred HhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhcC
Confidence 99999999999999999999999999899999999996
No 9
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.82 E-value=4.7e-20 Score=150.31 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=81.3
Q ss_pred CCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy10444 236 KPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADI 315 (341)
Q Consensus 236 ~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~ 315 (341)
.|+||+++++|. ..++|+|++++.|+||+|++|++|||+||+||+|+.++.+|+++++.+|+++
T Consensus 1 ~c~fc~i~~~e~----------------~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~ 64 (104)
T cd01278 1 LCHFCDIAKRRD----------------PDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHM 64 (104)
T ss_pred CCccccCccCCC----------------CCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHH
Confidence 499999998876 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHh-CCCCCeEEEEecC
Q psy10444 316 IKKITTKYDNLF-KVSFPYSMGFHVC 340 (341)
Q Consensus 316 l~~v~~~l~~~~-~~~~pyn~g~h~~ 340 (341)
++.+.+++.+.. -++.|||+|+|++
T Consensus 65 ~~~~~~~l~~~~~~~~~~~n~g~h~~ 90 (104)
T cd01278 65 ETVGREKLLRSDNTDPSEFRFGFHAP 90 (104)
T ss_pred HHHHHHHHHHHcCCCccCeEEEeCCC
Confidence 999988787762 1478999999986
No 10
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.81 E-value=6.9e-20 Score=148.37 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=81.0
Q ss_pred CCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy10444 236 KPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADI 315 (341)
Q Consensus 236 ~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~ 315 (341)
.|+||+++++|. +.++|+++++|+||+|++|.+|||+||+||+|+.+|.+|+++++.+|+.+
T Consensus 1 ~C~~c~ii~~e~------------------~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~ 62 (103)
T cd01277 1 DCIFCKIIAGEI------------------PSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILA 62 (103)
T ss_pred CCccccccCCCC------------------CCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHH
Confidence 499999998776 56799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 316 IKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 316 l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
++++.+++++.++ +.+||+++|++
T Consensus 63 ~~~v~~~l~~~~~-~~~~n~~~~~~ 86 (103)
T cd01277 63 AKKVARALKKALK-ADGLNILQNNG 86 (103)
T ss_pred HHHHHHHHHHhcC-CCceEEEEeCC
Confidence 9999999999995 99999999864
No 11
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.79 E-value=2.5e-19 Score=145.70 Aligned_cols=86 Identities=10% Similarity=0.263 Sum_probs=79.2
Q ss_pred CCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy10444 236 KPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADI 315 (341)
Q Consensus 236 ~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~ 315 (341)
+|+||+++++|. +.++|++|++++||+|++|.+|||+||+||+|++++.+|+++++.+|+++
T Consensus 1 ~C~fc~i~~~e~------------------~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~ 62 (104)
T cd01276 1 DCIFCKIIRGEI------------------PAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHL 62 (104)
T ss_pred CCcceecccCCC------------------ccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHH
Confidence 499999998776 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhCC-CCCeEEEEecC
Q psy10444 316 IKKITTKYDNLFKV-SFPYSMGFHVC 340 (341)
Q Consensus 316 l~~v~~~l~~~~~~-~~pyn~g~h~~ 340 (341)
++.+ +++.+.++. +.+|||++|++
T Consensus 63 ~~~~-~~~~~~~~~~~~~~n~~~~~g 87 (104)
T cd01276 63 LSAA-AKVAKDLGIAEDGYRLVINCG 87 (104)
T ss_pred HHHH-HHHHHHhCCCCCCEEEEEeCC
Confidence 9988 777788753 78999999975
No 12
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.75 E-value=4.6e-18 Score=143.47 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=81.0
Q ss_pred CccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHH
Q psy10444 237 PLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADII 316 (341)
Q Consensus 237 c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l 316 (341)
|+||+++++|. .. +++|+++++|+||+|++|.+|||+||+||+|+.++.+|+++++.+|+.++
T Consensus 1 C~fC~i~~~e~----------------~~-~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~ 63 (126)
T cd01275 1 CVFCDIPIKPD----------------ED-NLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLV 63 (126)
T ss_pred CccccCccCCC----------------cc-ccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHH
Confidence 99999998765 23 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 317 KKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 317 ~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
+.+.+++++.++ +.+||+++|++
T Consensus 64 ~~v~~~l~~~~~-~~~~n~~~~~g 86 (126)
T cd01275 64 QLAMKALKVVYK-PDGFNIGINDG 86 (126)
T ss_pred HHHHHHHHHhcC-CCceEEEEeCC
Confidence 999999999996 89999999875
No 13
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.62 E-value=1.7e-15 Score=130.39 Aligned_cols=86 Identities=19% Similarity=0.331 Sum_probs=82.6
Q ss_pred CCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy10444 236 KPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADI 315 (341)
Q Consensus 236 ~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~ 315 (341)
.|+||.++.+|+ ++.+|||+++++||++.+|..|+|+||+||+|+.++.+++++++.+|+.+
T Consensus 2 ~ciFc~ii~~e~------------------~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~ 63 (138)
T COG0537 2 MCIFCKIIRGEI------------------PANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLL 63 (138)
T ss_pred CceeeeeecCCC------------------CceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHH
Confidence 699999998877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 316 IKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 316 l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
++++.+.++..++ +.+||+++|..
T Consensus 64 ~~~ia~al~~~~~-~~g~ni~~N~g 87 (138)
T COG0537 64 AQKIAKALKEAFG-ADGYNIGINNG 87 (138)
T ss_pred HHHHHHHHHHHhC-CCceEEEEecC
Confidence 9999999999997 99999999864
No 14
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.61 E-value=2.4e-15 Score=126.38 Aligned_cols=86 Identities=10% Similarity=0.196 Sum_probs=76.1
Q ss_pred CCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy10444 235 GKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLAD 314 (341)
Q Consensus 235 g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~ 314 (341)
..|+||+|++++. ++.+||||+.++||++.+|..|+|+||+||+|+.++.+|++++..++++
T Consensus 3 ~~CiFC~I~~g~~------------------p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~ 64 (119)
T PRK10687 3 EETIFSKIIRREI------------------PSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGR 64 (119)
T ss_pred CCCchhhhhcCCC------------------CCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHH
Confidence 3699999998776 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-HhCCCCCeEEEEec
Q psy10444 315 IIKKITTKYDN-LFKVSFPYSMGFHV 339 (341)
Q Consensus 315 ~l~~v~~~l~~-~~~~~~pyn~g~h~ 339 (341)
+++.+.+.+.+ .+ ...+||+++|.
T Consensus 65 l~~~~~~~~~~~~~-~~~g~~l~~n~ 89 (119)
T PRK10687 65 MITVAAKIAEQEGI-AEDGYRLIMNT 89 (119)
T ss_pred HHHHHHHHHHHhCC-CCCceEEEEeC
Confidence 99877665543 34 37899999985
No 15
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.50 E-value=6.7e-14 Score=109.27 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=66.7
Q ss_pred EEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEecC
Q psy10444 270 VVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340 (341)
Q Consensus 270 V~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~~ 340 (341)
||||++++||+|++|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.++ ..+||+.+|..
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~n~g 70 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGN-VPSLTVFVNDG 70 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999999985 88999999864
No 16
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.38 E-value=1.6e-12 Score=104.86 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=70.5
Q ss_pred ccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEec
Q psy10444 264 LKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHV 339 (341)
Q Consensus 264 ~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~ 339 (341)
+.++++|+++++|+||++..|..|+|+||+||+|+.++.+|+++++.+|+.+++++.+.+++.++ +.+||++++.
T Consensus 3 e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~-~~~~~~~~~~ 77 (98)
T PF01230_consen 3 EIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFG-PDGYNVIINN 77 (98)
T ss_dssp SSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEE
T ss_pred CCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccc-cceeeccccc
Confidence 44789999999999999999999999999999999999999999999999999999999999996 8899999875
No 17
>KOG3275|consensus
Probab=99.33 E-value=3.1e-12 Score=105.34 Aligned_cols=86 Identities=15% Similarity=0.278 Sum_probs=70.3
Q ss_pred cCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCC---CCCCCHHHHH
Q psy10444 234 HGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLR---FTDLDDQQRN 310 (341)
Q Consensus 234 ~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~---~~~l~~~e~~ 310 (341)
.+.|+||+|+++|+ ++.+|+|++.++||.+.+|..|+|.+|+||+|++. ..+.+++.+.
T Consensus 15 ~~~tIF~kIi~keI------------------Pa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg 76 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEI------------------PAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLG 76 (127)
T ss_pred CCCcEeeeeecccC------------------CcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHH
Confidence 47899999999998 88999999999999999999999999999999544 4455666666
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCeEEEEecCC
Q psy10444 311 NLADIIKKITTKYDNLFKVSFPYSMGFHVCK 341 (341)
Q Consensus 311 ~La~~l~~v~~~l~~~~~~~~pyn~g~h~~~ 341 (341)
.|+.+.+++. +.++-..+||+.+|..|
T Consensus 77 ~ll~~~k~va----k~~Gl~~gYrvv~NnG~ 103 (127)
T KOG3275|consen 77 HLLPVAKKVA----KALGLEDGYRVVQNNGK 103 (127)
T ss_pred HHHHHHHHHH----HHhCcccceeEEEcCCc
Confidence 6665555555 66666789999998653
No 18
>KOG2958|consensus
Probab=99.14 E-value=2.2e-11 Score=114.66 Aligned_cols=51 Identities=49% Similarity=0.944 Sum_probs=48.2
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccccc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHEHQ 51 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~~~~ 51 (341)
||+||||++++.+|++.|+.+||.|||.++.+|||+|+++|||+|+++..+
T Consensus 239 llipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aP 289 (354)
T KOG2958|consen 239 LLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAP 289 (354)
T ss_pred eeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCC
Confidence 689999999999999999999999999999999999999999999986543
No 19
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.10 E-value=3.5e-11 Score=106.74 Aligned_cols=48 Identities=54% Similarity=1.007 Sum_probs=39.4
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 48 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~ 48 (341)
||+||||+++|.+|++.|+.+||.+||.++++||++|+++|||+|+++
T Consensus 53 ~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ih 100 (166)
T PF02744_consen 53 WILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIH 100 (166)
T ss_dssp EEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE
T ss_pred EEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhh
Confidence 799999999999999999999999999999999999999999999773
No 20
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.05 E-value=1.9e-10 Score=96.17 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=70.8
Q ss_pred CCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCC-CCCCCCCCCHHHHHHHHH
Q psy10444 236 KPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRT-HVLRFTDLDDQQRNNLAD 314 (341)
Q Consensus 236 ~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~-H~~~~~~l~~~e~~~La~ 314 (341)
.|+||.|+.++. ++++||+|+.|++|-+.+|..++|++|+||+ |+.++.+|+.+.+.-|.+
T Consensus 1 ~cif~~i~~~~~------------------~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~ 62 (116)
T PF11969_consen 1 NCIFCIIIRGEE------------------PERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLER 62 (116)
T ss_dssp HHHHHHHTTSSS------------------GGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHH
T ss_pred CccceEeEcCCC------------------CCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHH
Confidence 399999987654 7899999999999999999999999999999 999999999999998888
Q ss_pred HHHHHHHHHHhHhC---CCCCeEEEEec
Q psy10444 315 IIKKITTKYDNLFK---VSFPYSMGFHV 339 (341)
Q Consensus 315 ~l~~v~~~l~~~~~---~~~pyn~g~h~ 339 (341)
+...+.+.+.+... ....+++|+|.
T Consensus 63 m~~~~~~~~~~~~~~~~~~~~~~~gfH~ 90 (116)
T PF11969_consen 63 MREVARELLKEEYPGDLDSDDIRLGFHY 90 (116)
T ss_dssp HHHHHHHHHHHHH-TT-EGGGEEEEEES
T ss_pred HHHHHHHHHHHhcccccchhhhcccccC
Confidence 88888888877763 25689999986
No 21
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.04 E-value=7.4e-10 Score=86.30 Aligned_cols=78 Identities=28% Similarity=0.320 Sum_probs=69.5
Q ss_pred ceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc--cCCceE
Q psy10444 112 SVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG--KTYEWV 189 (341)
Q Consensus 112 ~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~--~~i~Yv 189 (341)
.+.+|.|.+|+. ..|.+||- .+|..++.+|+.+++.+++.++++..+.|+ .+...+
T Consensus 6 ~~~a~~~~~p~~---------------------~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 63 (86)
T cd00468 6 HSFAFVNLKPAA---------------------PGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSL 63 (86)
T ss_pred cEEEEECCCCCC---------------------CCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 588999999985 35776665 999999999999999999999999999995 467789
Q ss_pred EEeeecCcCCCCCCCcccccee
Q psy10444 190 QIFENKGAIMGCSNPHPHCQVW 211 (341)
Q Consensus 190 ~iFkN~G~~aGaSl~HPHsQii 211 (341)
.++.|.|+.+|.|+.|+|.||+
T Consensus 64 ~~~~n~g~~~g~~v~H~H~hii 85 (86)
T cd00468 64 TVFVNDGAAAGQSVPHVHLHVL 85 (86)
T ss_pred EEEEcCCccCCCcCCEEEEEeC
Confidence 9999999999999999999986
No 22
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=98.77 E-value=4e-09 Score=102.52 Aligned_cols=48 Identities=56% Similarity=1.009 Sum_probs=45.8
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 48 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~ 48 (341)
+|+||+|+..+++|+++|+.+||.|||.++.+||++|+.+|||+|.++
T Consensus 225 ~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h 272 (338)
T COG1085 225 LIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFH 272 (338)
T ss_pred EeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeee
Confidence 689999999999999999999999999999999999999999999544
No 23
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.62 E-value=3e-08 Score=97.70 Aligned_cols=58 Identities=59% Similarity=1.023 Sum_probs=51.4
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc-----------cccceeeccc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH-----------EHQHVRYNPL 58 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~-----------~~~~~r~~pl 58 (341)
||+||+|++++.+|+++|+.+||++||+++++||++|+.+|||+|+++ +|.|+.+-|.
T Consensus 234 lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPr 302 (347)
T TIGR00209 234 LLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPP 302 (347)
T ss_pred EEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCC
Confidence 799999999999999999999999999999999999999999999433 4566666663
No 24
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.57 E-value=5.6e-08 Score=95.72 Aligned_cols=57 Identities=56% Similarity=1.039 Sum_probs=50.6
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc-----------cccceeecc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH-----------EHQHVRYNP 57 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~-----------~~~~~r~~p 57 (341)
||+||+|++++.+|+++|+.+||++||+++++||++|+.++||+|+++ +|.|+.+-|
T Consensus 234 lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiP 301 (346)
T PRK11720 234 LLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYP 301 (346)
T ss_pred EEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeC
Confidence 799999999999999999999999999999999999999999999433 455666665
No 25
>PLN02643 ADP-glucose phosphorylase
Probab=98.47 E-value=1.2e-07 Score=92.98 Aligned_cols=47 Identities=26% Similarity=0.529 Sum_probs=44.4
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 48 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~ 48 (341)
||+||+|++++.+||++|+.+||++||+++++||++|+.+ ||+|.++
T Consensus 233 lIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~-pyN~~~~ 279 (336)
T PLN02643 233 WIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDP-PYNYMIQ 279 (336)
T ss_pred EEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-Cceeeee
Confidence 6899999999999999999999999999999999999988 9999544
No 26
>KOG3379|consensus
Probab=98.47 E-value=8.9e-07 Score=75.26 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=67.2
Q ss_pred cCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEE
Q psy10444 265 KRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGF 337 (341)
Q Consensus 265 ~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~ 337 (341)
.++-|.|++++.+||++.-|..|+|+||.|+|-+++|.||+.+|..||...++++.+.+++.++ ....|+++
T Consensus 15 ~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~-~ts~ti~i 86 (150)
T KOG3379|consen 15 PPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYN-ATSLTIAI 86 (150)
T ss_pred CcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhc-ccceEEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999997 66677776
No 27
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.44 E-value=1.3e-07 Score=92.58 Aligned_cols=48 Identities=60% Similarity=1.144 Sum_probs=45.9
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 48 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~ 48 (341)
||+||+|+.++.||+++|+.+||++|++++++||++|++++||+|+++
T Consensus 224 lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h 271 (329)
T cd00608 224 HILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWH 271 (329)
T ss_pred EEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 699999999999999999999999999999999999999999999763
No 28
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=98.31 E-value=5e-07 Score=72.79 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=41.4
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMG 46 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~ 46 (341)
||+||||++++.||+++|+.+|+++++++.++++.+|+ +.+|+|.
T Consensus 38 lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~-~~~~n~~ 82 (103)
T cd01277 38 LVIPKKHYENLLDLDPEELAELILAAKKVARALKKALK-ADGLNIL 82 (103)
T ss_pred EEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEE
Confidence 68999999999999999999999999999999999997 6666664
No 29
>KOG4359|consensus
Probab=98.06 E-value=9.7e-06 Score=69.22 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=67.7
Q ss_pred hcCCCccchhhhHHHhhccCCchhHHHHhhhccCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy10444 233 THGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNL 312 (341)
Q Consensus 233 ~~g~c~fc~i~~~e~~~~~~~~~~~~~~~~~~~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~L 312 (341)
.+.+|.||||+.... ..++....||+..|+|-+..|..--|-+++||+|+.+..+|+.++..-+
T Consensus 29 ~~~~C~FCDia~r~~----------------~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lv 92 (166)
T KOG4359|consen 29 PKSTCVFCDIAGRQD----------------PGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELV 92 (166)
T ss_pred CCCceEEEEeecccC----------------CCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHH
Confidence 456899999987544 5678888999999999999999999999999999999999988776555
Q ss_pred HHHHHHHHHHHHhHhC-CCCCeEEEEec
Q psy10444 313 ADIIKKITTKYDNLFK-VSFPYSMGFHV 339 (341)
Q Consensus 313 a~~l~~v~~~l~~~~~-~~~pyn~g~h~ 339 (341)
-++...-...+.+-.. .+.---||+|.
T Consensus 93 e~m~~~G~~~l~r~~~td~~~~r~GFHL 120 (166)
T KOG4359|consen 93 ENMVTVGKTILERNNFTDFTNVRMGFHL 120 (166)
T ss_pred HHHHHHHHHHHHHhccCCchheeEeccC
Confidence 5444433333333322 23345567764
No 30
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=98.04 E-value=2.2e-05 Score=66.01 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCC---CCCCCCCceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHH
Q psy10444 93 NPLCPTATRGNG---EVNPNYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIR 169 (341)
Q Consensus 93 CPFCpg~e~~~~---~~~~~~~~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~ 169 (341)
|+||-=...... -+.++ ..+.+|-+.+|... .+|+|..-+|..++.+|+.+++.
T Consensus 1 C~fC~i~~~e~~~~~iv~e~-~~~~~~~~~~p~~~----------------------gh~lIiPk~H~~~~~~L~~~e~~ 57 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRT-KHSFAVVNLYPYNP----------------------GHVLVVPYRHVPRLEDLTPEEIA 57 (126)
T ss_pred CccccCccCCCccccEEEeC-CCEEEEEcCCCCCC----------------------CcEEEEeccccCChhhCCHHHHH
Confidence 899986543221 12222 24778888888752 34778888999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCceEEEeeecCcCCCCCCCccccceee
Q psy10444 170 KVIDTWVDETASLGK---TYEWVQIFENKGAIMGCSNPHPHCQVWA 212 (341)
Q Consensus 170 ~vl~~~~~r~~~l~~---~i~Yv~iFkN~G~~aGaSl~HPHsQiia 212 (341)
.+..+.+.-.+.|.+ ...| .+..|.|+.+|.+..|.|.+|+.
T Consensus 58 ~l~~~~~~v~~~l~~~~~~~~~-n~~~~~g~~~gq~v~H~HiHiiP 102 (126)
T cd01275 58 DLFKLVQLAMKALKVVYKPDGF-NIGINDGKAGGGIVPHVHIHIVP 102 (126)
T ss_pred HHHHHHHHHHHHHHHhcCCCce-EEEEeCCcccCCCcCEEEEEEeC
Confidence 999888865555542 2334 56679999999999999999864
No 31
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=97.84 E-value=6.4e-05 Score=63.21 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHH
Q psy10444 91 PKNPLCPTATRG--NGEVNPNYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEI 168 (341)
Q Consensus 91 ~~CPFCpg~e~~--~~~~~~~~~~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i 168 (341)
+.|.||-=-.++ ...+.++ ..+.+|-+.||+.. .| ++|...+|..++.+++.++.
T Consensus 3 ~~CiFC~I~~g~~p~~~v~ed-d~~~aflD~~P~~~---------------------GH-~LViPK~H~~~l~dl~~~~~ 59 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQD-ELVTAFRDISPQAP---------------------TH-ILIIPNILIPTVNDVSAEHE 59 (119)
T ss_pred CCCchhhhhcCCCCCCEEEEC-CCEEEEEcCCCCCC---------------------cc-EEEEehhHhCChhHCChHHH
Confidence 369999833221 1113334 36899999999852 24 44567799999999999976
Q ss_pred HHHHHHH---HHHHHHhccCCceEEEeeecCcCCCCCCCccccceeecC
Q psy10444 169 RKVIDTW---VDETASLGKTYEWVQIFENKGAIMGCSNPHPHCQVWASS 214 (341)
Q Consensus 169 ~~vl~~~---~~r~~~l~~~i~Yv~iFkN~G~~aGaSl~HPHsQiia~p 214 (341)
..+..+. +...++..-...=+.+..|.|+.+|.|+.|.|.-|++-.
T Consensus 60 ~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~ 108 (119)
T PRK10687 60 QALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGR 108 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCc
Confidence 6655444 322222111223466788899999999999999888744
No 32
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=97.83 E-value=8.6e-05 Score=62.68 Aligned_cols=61 Identities=16% Similarity=0.320 Sum_probs=53.7
Q ss_pred cCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy10444 265 KRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDN 325 (341)
Q Consensus 265 ~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~ 325 (341)
+...||.-++++..-+|..|..++|++|+|-.|.+++.+++++.+.++-+.-+.+.+.+.+
T Consensus 23 ~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~ 83 (121)
T PF04677_consen 23 EKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS 83 (121)
T ss_pred cceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999866655555443
No 33
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=97.71 E-value=3.2e-05 Score=62.66 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=42.5
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCcccccc
Q psy10444 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFK-VSFPYSMGFHEHQ 51 (341)
Q Consensus 1 ~i~Pkr~~~~l~~~~~~e~~~la~~lk~~~~~~d~lf~-~~~pY~M~~~~~~ 51 (341)
||+||+|++++.+|++++..+|+++++.+.+++...++ .+.||+|+.+..+
T Consensus 40 lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~~p 91 (104)
T cd01278 40 LVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPSEFRFGFHAPP 91 (104)
T ss_pred EEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCccCeEEEeCCCC
Confidence 68999999999999999999999999988886766532 3778999776544
No 34
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=97.64 E-value=0.0003 Score=56.77 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCC--CCCCCCceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHH
Q psy10444 92 KNPLCPTATRGNGE--VNPNYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIR 169 (341)
Q Consensus 92 ~CPFCpg~e~~~~~--~~~~~~~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~ 169 (341)
+|+||--...+.+. +.++ ..+.+|.+.||.. -.+++|...+|..++.+|+.++..
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~-~~~~a~~~~~p~~----------------------~gh~lIiPk~H~~~~~dl~~~~~~ 57 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYED-DEVLAFHDINPQA----------------------PVHILVIPKKHIASLSDATEEDEE 57 (104)
T ss_pred CCcceecccCCCccCEEEEC-CCEEEEECCCCCC----------------------CCEEEEEecceeCChHHcccccHH
Confidence 49999754332111 1222 2578888888875 246778888999999998776555
Q ss_pred HHHHHHHHH--H-HHhccCCceEEEeeecCcCCCCCCCccccceee
Q psy10444 170 KVIDTWVDE--T-ASLGKTYEWVQIFENKGAIMGCSNPHPHCQVWA 212 (341)
Q Consensus 170 ~vl~~~~~r--~-~~l~~~i~Yv~iFkN~G~~aGaSl~HPHsQiia 212 (341)
.+-.+.+.- + +.+.....=+.+..|.|+.+|.|..|-|..|++
T Consensus 58 ~l~~~~~~~~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 58 LLGHLLSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeC
Confidence 544443332 2 222211233468889999999999999999986
No 35
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00011 Score=68.31 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=59.6
Q ss_pred eeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhccCCceEEEee
Q psy10444 114 FVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTYEWVQIFE 193 (341)
Q Consensus 114 rvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~~~i~Yv~iFk 193 (341)
..+=||||.+ -.|-.|| |.+-...=+-+++.++ .-||. -+..++. .+|-
T Consensus 95 ~~llNKF~VV---------------------deHlLiV-TrefedQ~s~LTl~Df---~ta~~-vL~~ldg-----lvFY 143 (298)
T COG4360 95 KLLLNKFPVV---------------------DEHLLIV-TREFEDQESALTLADF---TTAYA-VLCGLDG-----LVFY 143 (298)
T ss_pred hhhhhcCCcc---------------------cceeEEe-ehhhhhccccCCHHHH---HHHHH-HHhcccc-----eEEe
Confidence 5677999997 2577765 4444444455666665 34443 3444443 7999
Q ss_pred ecCcCCCCCCCccccceeecCCCCChHHHHHHHHHHHHH
Q psy10444 194 NKGAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQREYYQ 232 (341)
Q Consensus 194 N~G~~aGaSl~HPHsQiia~p~vP~~~~~el~~~~~y~~ 232 (341)
|.|+.||||+.|-|.||+-+||++...+ +-..+++|.
T Consensus 144 NsGp~aGaSq~HkHLQi~pmPfv~~~~~--lpn~~dhFl 180 (298)
T COG4360 144 NSGPIAGASQDHKHLQIVPMPFVAFQDQ--LPNGKDHFL 180 (298)
T ss_pred cCCCCcCcCCCccceeEeeccccccccc--cCchHhhcc
Confidence 9999999999999999999999987543 223455554
No 36
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=97.45 E-value=0.0005 Score=55.11 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=64.4
Q ss_pred ceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcc--CCceE
Q psy10444 112 SVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGK--TYEWV 189 (341)
Q Consensus 112 ~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~~--~i~Yv 189 (341)
.+.+|.+.+|... .-++|...+|..++.+++.++...++.+.+.-.+.|.. ...-+
T Consensus 14 ~~~~~~~~~p~~~----------------------gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~ 71 (98)
T PF01230_consen 14 HFVAFLDIFPISP----------------------GHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGY 71 (98)
T ss_dssp SEEEEEESSTSST----------------------TEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CEEEEEcCCCCCC----------------------eEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhccccccee
Confidence 5888999999751 23456677899999999999999999998887777764 45566
Q ss_pred EEeeecCcCCCCCCCccccceee
Q psy10444 190 QIFENKGAIMGCSNPHPHCQVWA 212 (341)
Q Consensus 190 ~iFkN~G~~aGaSl~HPHsQiia 212 (341)
.+.+|.|..+|.+++|-|..|+.
T Consensus 72 ~~~~~~g~~~gq~v~HlH~HviP 94 (98)
T PF01230_consen 72 NVIINNGPAAGQSVPHLHFHVIP 94 (98)
T ss_dssp EEEEEESGGGTSSSSS-EEEEEE
T ss_pred eccccchhhhcCccCEEEEEEec
Confidence 78899999999999999999875
No 37
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=96.79 E-value=0.0058 Score=52.64 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCC--CCCCCCCceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHH
Q psy10444 92 KNPLCPTATRGNG--EVNPNYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIR 169 (341)
Q Consensus 92 ~CPFCpg~e~~~~--~~~~~~~~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~ 169 (341)
.|.||.--....+ .+.++ ..+.+|-|.||+-. |..-||-- .|...+.+++.+++.
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~-~~~~afld~~P~~~--------------------gH~LviPk--~h~~~l~~l~~~~~~ 58 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYED-EHVLAFLDIYPAAP--------------------GHTLVIPK--RHVSDLEDLDPEELA 58 (138)
T ss_pred CceeeeeecCCCCceEEEeC-CCEEEEecCCCCCC--------------------CeEEEEec--cchhhhhhCCHHHHH
Confidence 5999964322111 12333 25899999999852 44444433 899999999999999
Q ss_pred HHHHHHHHHHHHhccC--CceEEEeeecCcCCCCCCCccccceee
Q psy10444 170 KVIDTWVDETASLGKT--YEWVQIFENKGAIMGCSNPHPHCQVWA 212 (341)
Q Consensus 170 ~vl~~~~~r~~~l~~~--i~Yv~iFkN~G~~aGaSl~HPHsQiia 212 (341)
.++.+.+.-.+.+++. ..=+-+--|-|+.||.+..|-|.-|+.
T Consensus 59 ~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIP 103 (138)
T COG0537 59 ELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIP 103 (138)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcceEEEEEcC
Confidence 9999999888887632 233446679999999999999999887
No 38
>KOG2476|consensus
Probab=95.69 E-value=0.034 Score=56.36 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=52.3
Q ss_pred cCCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhC
Q psy10444 265 KRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFK 328 (341)
Q Consensus 265 ~~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~ 328 (341)
+.-.||.-+++|..-+|..|....|+||+|-.|++.+..|+.+.+.++-+-=. .++++.+.++
T Consensus 331 EkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kyka-al~~myk~~g 393 (528)
T KOG2476|consen 331 EKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKA-ALRKMYKKQG 393 (528)
T ss_pred hhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHH-HHHHHHHhcC
Confidence 46789999999999999999999999999999999999999887777766544 4444455554
No 39
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=92.48 E-value=0.9 Score=38.31 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=43.0
Q ss_pred ceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc-cCCceEEEeeecCcCCCCCCCccccceeec
Q psy10444 146 VCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG-KTYEWVQIFENKGAIMGCSNPHPHCQVWAS 213 (341)
Q Consensus 146 ~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~-~~i~Yv~iFkN~G~~aGaSl~HPHsQiia~ 213 (341)
.|-+ |..=+|..++.+++.+.+.++-+ ++..+++.- +.-+-|.+|++. ..+..|-|.|.+.+
T Consensus 46 gH~l-IvPi~H~~s~~~~de~~~~Ei~~-f~~~L~~mf~~~~~~vvf~E~~----~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 46 GHCL-IVPIQHVPSLTELDEEVWEEIRN-FQKSLRKMFASQGKDVVFFERV----RKRNPHTHIQCVPV 108 (121)
T ss_pred CEEE-EEecceecccccCCHHHHHHHHH-HHHHHHHHHHHcCCCEEEEEEe----CCCCcEEEEEEEEc
Confidence 3544 44558999999999988887665 777777663 344567889988 45566777776653
No 40
>KOG2477|consensus
Probab=87.92 E-value=2.4 Score=43.87 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.5
Q ss_pred cCCeEEEECCcEEEEecCCCC-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy10444 265 KRDRVVVRNPDWVVVVPFWAE-WPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDN 325 (341)
Q Consensus 265 ~~~rvV~~~~~~~a~~p~~~~-~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~ 325 (341)
....||.-+...++-+|.++- ..||++|+|-.|...-..|+++.++++-..-+-++..++.
T Consensus 419 pkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas 480 (628)
T KOG2477|consen 419 PKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFAS 480 (628)
T ss_pred ccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777877764 4699999999999999999999998887766655555543
No 41
>KOG3379|consensus
Probab=86.46 E-value=2.7 Score=36.28 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=59.4
Q ss_pred ceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcc--CCceE
Q psy10444 112 SVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGK--TYEWV 189 (341)
Q Consensus 112 ~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~~--~i~Yv 189 (341)
....|-|+=|.+. .| |+|-.-+-...|.+|+.+|..++|.+.+.-.+-|.+ ...-.
T Consensus 25 ~sfafvNlkPvvp---------------------gH-VLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ 82 (150)
T KOG3379|consen 25 HSFAFVNLKPVVP---------------------GH-VLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSL 82 (150)
T ss_pred ceEEEEecccccc---------------------ce-EEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccce
Confidence 4788999999872 24 444344455789999999999999998876666653 33346
Q ss_pred EEeeecCcCCCCCCCcccccee
Q psy10444 190 QIFENKGAIMGCSNPHPHCQVW 211 (341)
Q Consensus 190 ~iFkN~G~~aGaSl~HPHsQii 211 (341)
.|----|+.||-|.+|-|--|+
T Consensus 83 ti~iQDG~~AGQTVpHvHvHIl 104 (150)
T KOG3379|consen 83 TIAIQDGPEAGQTVPHVHVHIL 104 (150)
T ss_pred EEEeccccccCcccceeEEEEc
Confidence 6777789999999999998864
No 42
>KOG0562|consensus
Probab=83.85 E-value=1.1 Score=39.98 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=44.5
Q ss_pred ccCCeEEEEC-CcEEEEecCCCCCCceEEEEeC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCC---CCCeEEEEe
Q psy10444 264 LKRDRVVVRN-PDWVVVVPFWAEWPFETMILPR-THVLRFTDLDDQQRNNLADIIKKITTKYDNLFKV---SFPYSMGFH 338 (341)
Q Consensus 264 ~~~~rvV~~~-~~~~a~~p~~~~~p~e~~I~Pk-~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~---~~pyn~g~h 338 (341)
.++++|+.+. +.+++|.+-+|..-.|++|+|+ .-+.++.+...+.+.-|-. ...+-.++...+.. ..-|++|+|
T Consensus 12 ~k~e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~-~h~~~~~~v~~~~~~~~~~~f~vG~H 90 (184)
T KOG0562|consen 12 PKPENVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKE-DHAVGPCWVDQLTNEALCNYFRVGFH 90 (184)
T ss_pred CccceeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHH-HhhcCchHHHHhcchhhhhheeeeec
Confidence 4566677766 7999999999999999999996 2233333333333322222 22222233333321 235788888
Q ss_pred c
Q psy10444 339 V 339 (341)
Q Consensus 339 ~ 339 (341)
.
T Consensus 91 a 91 (184)
T KOG0562|consen 91 A 91 (184)
T ss_pred c
Confidence 5
No 43
>KOG4359|consensus
Probab=81.78 E-value=4.6 Score=35.03 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCCCCC--C-CCCCceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHH
Q psy10444 90 DPKNPLCPTATRGNGEV--N-PNYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIE 166 (341)
Q Consensus 90 ~~~CPFCpg~e~~~~~~--~-~~~~~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~ 166 (341)
++.|-||--.-|..+.. . -+-.+..||..+|||.+ .|+. +.+.+|-.++.+++.+
T Consensus 30 ~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~---------------------~HYL-vipK~Hi~~~~~L~k~ 87 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAAT---------------------HHYL-VVPKKHIGNCRTLRKD 87 (166)
T ss_pred CCceEEEEeecccCCCCceeEecCCcEEEEecCCcccc---------------------ceEE-EechHHcCChhhcchh
Confidence 45899998776654321 0 01135789999999852 4665 5688999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCceEEEeeec----CcCCCCCCCccccceee
Q psy10444 167 EIRKVIDTWVDETASLGKTYEWVQIFENK----GAIMGCSNPHPHCQVWA 212 (341)
Q Consensus 167 ~i~~vl~~~~~r~~~l~~~i~Yv~iFkN~----G~~aGaSl~HPHsQiia 212 (341)
++..+=+...+-...|.+.-. ..|+|- --+-=+|..|-|..+|+
T Consensus 88 ~V~Lve~m~~~G~~~l~r~~~--td~~~~r~GFHLPPf~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 88 QVELVENMVTVGKTILERNNF--TDFTNVRMGFHLPPFCSVSHLHLHVIA 135 (166)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--CCchheeEeccCCCcceeeeeeEeeec
Confidence 987766455443333321100 122221 11233789999999987
No 44
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=77.14 E-value=1.1 Score=30.97 Aligned_cols=8 Identities=38% Similarity=1.061 Sum_probs=7.0
Q ss_pred CCCCCCCC
Q psy10444 93 NPLCPTAT 100 (341)
Q Consensus 93 CPFCpg~e 100 (341)
||||||.-
T Consensus 1 CP~C~~kk 8 (43)
T PF03470_consen 1 CPFCPGKK 8 (43)
T ss_pred CCCCCCCC
Confidence 99999964
No 45
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=75.93 E-value=9.7 Score=31.52 Aligned_cols=85 Identities=13% Similarity=0.023 Sum_probs=49.4
Q ss_pred ceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHH---HHHHhcc---C
Q psy10444 112 SVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVD---ETASLGK---T 185 (341)
Q Consensus 112 ~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~---r~~~l~~---~ 185 (341)
++.+|.+.||.- ..|-.||--..|-.++.+|+.+++..+-.+... -+++... .
T Consensus 22 ~~v~~~D~~P~a---------------------~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 22 DFVVFKDIYPKA---------------------PVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp SEEEEE-TT-SC---------------------CEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CEEEeeCCCCCc---------------------CcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 689999999872 367777766669999999987776543333222 2222221 1
Q ss_pred CceEEEeeecCcCCCCCCCccccceeecCCCCChHH
Q psy10444 186 YEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLPR 221 (341)
Q Consensus 186 i~Yv~iFkN~G~~aGaSl~HPHsQiia~p~vP~~~~ 221 (341)
..-+.++-...+ |+.|-|..+++.++..+..+
T Consensus 81 ~~~~~~gfH~~P----S~~HLHlHvi~~~~~s~~lk 112 (116)
T PF11969_consen 81 SDDIRLGFHYPP----SVYHLHLHVISPDFDSPCLK 112 (116)
T ss_dssp GGGEEEEEESS-----SSSS-EEEEEETTS--TTSB
T ss_pred hhhhcccccCCC----CcceEEEEEccCCCcCcccc
Confidence 334555555555 99999999999888776543
No 46
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=63.62 E-value=25 Score=30.98 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=39.1
Q ss_pred ceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEE-----EecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc-cC
Q psy10444 112 SVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVI-----CFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG-KT 185 (341)
Q Consensus 112 ~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVI-----i~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~-~~ 185 (341)
++++..|+||+--+.+ =.|-|| +.++... .+++.+ ....++.+.++.-..+ ..
T Consensus 73 d~kIl~NDwPY~~e~~-----------------I~HlVVWsK~~L~~d~~~---gd~t~~-~r~~I~~fv~~~f~~~~~~ 131 (158)
T PF12239_consen 73 DYKILRNDWPYGFEPG-----------------IVHLVVWSKFPLPVDPET---GDLTPE-SRELIEDFVQRTFVDRLIP 131 (158)
T ss_pred ceEEEecCCCcCCCCC-----------------ceEEEEEecCcccccccc---ccccHH-HHHHHHHHHHHHHHhhcCC
Confidence 5999999999964321 146665 2233333 444432 3333444444333111 12
Q ss_pred CceEEEeeecCcCCC-CCCCccc
Q psy10444 186 YEWVQIFENKGAIMG-CSNPHPH 207 (341)
Q Consensus 186 i~Yv~iFkN~G~~aG-aSl~HPH 207 (341)
-.=|.-|+|+-..-- -|+.|-|
T Consensus 132 ~~~v~WF~N~~~LqSV~~v~H~H 154 (158)
T PF12239_consen 132 EDNVLWFKNWPSLQSVRAVEHIH 154 (158)
T ss_pred CccEEEEeCchhcCCcCcceEEE
Confidence 334568999865433 3466665
No 47
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=48.96 E-value=9.9 Score=27.48 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=6.5
Q ss_pred CCCCCCCCC
Q psy10444 92 KNPLCPTAT 100 (341)
Q Consensus 92 ~CPFCpg~e 100 (341)
.|||| |..
T Consensus 5 PCPFC-G~~ 12 (61)
T PF14354_consen 5 PCPFC-GSA 12 (61)
T ss_pred CCCCC-CCc
Confidence 59999 864
No 48
>KOG3275|consensus
Probab=45.81 E-value=51 Score=27.88 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=49.6
Q ss_pred ceEEEEecCCC---CCCcCCCCHHHHHHHHHHHHHHHHHhc--cCCceEEEeeecCcCCCCCCCccccceee
Q psy10444 146 VCKVICFHPKS---NTTLPIMSIEEIRKVIDTWVDETASLG--KTYEWVQIFENKGAIMGCSNPHPHCQVWA 212 (341)
Q Consensus 146 ~heVIi~sp~H---~~~l~~ls~~~i~~vl~~~~~r~~~l~--~~i~Yv~iFkN~G~~aGaSl~HPHsQiia 212 (341)
.|-. |....| -....+.+.+.+..+|-+-+.-.++++ .+++ +-.|.|+.++-|..|-|.-+++
T Consensus 51 ~HfL-vIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYr---vv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 51 GHFL-VIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYR---VVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred ceEE-EeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCccccee---EEEcCCcccceEEEEEEEEEeC
Confidence 3544 345667 456778999999999999998888887 3344 4469999999999999999876
No 49
>KOG0562|consensus
Probab=45.68 E-value=30 Score=31.02 Aligned_cols=97 Identities=15% Similarity=0.229 Sum_probs=68.4
Q ss_pred CceeeeeCCCCccccCCCCCCCCCCccccccCCCcceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc----cCC
Q psy10444 111 DSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG----KTY 186 (341)
Q Consensus 111 ~~vrvfpN~fPal~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~----~~i 186 (341)
.+|.||..+||-- .|-++|.+. .+.|..++...++-+.-|. .+-
T Consensus 23 d~vvvIrD~fPKa----------------------~~H~LvLpr----------~s~i~~l~~~~qe~l~ll~~~h~~~~ 70 (184)
T KOG0562|consen 23 DDVVVIRDKFPKA----------------------RMHLLVLPR----------RSSIDSLFSVVQEHLSLLKEDHAVGP 70 (184)
T ss_pred ccEEEEcccCccc----------------------eeEEEEecc----------cchhHHHHHHHHHHhhHhHHHhhcCc
Confidence 3699999999963 244455433 3344455555555444332 345
Q ss_pred ceEEEeeec--------CcCCCCCCCccccceeecCCCCChHHHHHHHHHHHHHhcCCCccchhhh
Q psy10444 187 EWVQIFENK--------GAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVS 244 (341)
Q Consensus 187 ~Yv~iFkN~--------G~~aGaSl~HPHsQiia~p~vP~~~~~el~~~~~y~~~~g~c~fc~i~~ 244 (341)
.++.+|+|. |--||-|+.+-|.-||...|+.+..+. +.+|+.-.+.+|-++..
T Consensus 71 ~~v~~~~~~~~~~~f~vG~HavPSM~~LHLHVISkDf~S~sLKN-----KKHwnSFnT~fFv~~~~ 131 (184)
T KOG0562|consen 71 CWVDQLTNEALCNYFRVGFHAVPSMNNLHLHVISKDFVSPSLKN-----KKHWNSFNTEFFVKSDD 131 (184)
T ss_pred hHHHHhcchhhhhheeeeeccCcchhheeEEEeecccCCchhcc-----chhhcccCccceeeccc
Confidence 677777766 999999999999999999999987653 56788888888887754
No 50
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=43.23 E-value=60 Score=33.00 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=35.7
Q ss_pred ECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCeEEEEec
Q psy10444 272 RNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHV 339 (341)
Q Consensus 272 ~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~g~h~ 339 (341)
+++..+++++-+|..++|++++|..-....+-++.+.+ ..++. +-...+ +..|-+|.|.
T Consensus 167 ~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l-------~la~~-~a~~~~-~p~frvgYNS 225 (403)
T PLN03103 167 SNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSF-------LLALY-MAAEAN-NPYFRVGYNS 225 (403)
T ss_pred CCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHH-------HHHHH-HHHhcC-CCcEEEEecC
Confidence 46667999999999999999998642222233554322 21111 112332 5567888774
No 51
>KOG2476|consensus
Probab=42.65 E-value=1.1e+02 Score=31.71 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=49.8
Q ss_pred ceEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc-cCCceEEEeeecCcCCCCCCCccccceeecCCCCChHHHHH
Q psy10444 146 VCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLG-KTYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLPRIKD 224 (341)
Q Consensus 146 ~heVIi~sp~H~~~l~~ls~~~i~~vl~~~~~r~~~l~-~~i~Yv~iFkN~G~~aGaSl~HPHsQiia~p~vP~~~~~el 224 (341)
-+-|.|.+=.|..++..+| .++..=|..|+.-++... +.-+.+.+|+=. -.--.|-|.|+|..|. .-.+.+
T Consensus 353 ~~HvlIipi~H~p~~~~ls-~ev~~Ei~kykaal~~myk~~g~~~vvfE~~----~~rs~Hlq~Qvipvpk---s~s~~i 424 (528)
T KOG2476|consen 353 SDHVLIIPIEHIPSLVPLS-AEVTQEINKYKAALRKMYKKQGKDAVVFERQ----SYRSVHLQLQVIPVPK---SSSRQI 424 (528)
T ss_pred CCeEEEEEcccccccccCC-HHHHHHHHHHHHHHHHHHHhcCCeEEEEEee----cccceeeEEEEEeccc---hhhhhh
Confidence 3567788889999999999 555556677777777664 455677777742 2235799999998664 444444
Q ss_pred HH
Q psy10444 225 IH 226 (341)
Q Consensus 225 ~~ 226 (341)
..
T Consensus 425 k~ 426 (528)
T KOG2476|consen 425 KS 426 (528)
T ss_pred hH
Confidence 43
No 52
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=41.83 E-value=26 Score=30.89 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccceeecccCCcEEEE
Q psy10444 11 FTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHEHQHVRYNPLKGEWILV 65 (341)
Q Consensus 11 l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~~~~~~~~r~~pl~~~wvii 65 (341)
+.+||++|+..|..+|. + +--| ..|.||.+.|.|+.+|+---+
T Consensus 58 ~~~Lt~~qi~~l~~~i~----------~-~~~~-~iP~w~~nr~kd~~tG~d~h~ 100 (154)
T PTZ00134 58 AGELTAEEIEKIVEIIA----------N-PLQF-KIPDWFLNRQRDPKDGKNSHL 100 (154)
T ss_pred cccCCHHHHHHHHHHHh----------c-cccC-CCChhHhhccccccccchhhh
Confidence 67999999999999986 2 1112 246678888999988765543
No 53
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=39.81 E-value=18 Score=28.76 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.6
Q ss_pred ccceeecccCCcEEEEccCCCCCC
Q psy10444 50 HQHVRYNPLKGEWILVSPHRMKRP 73 (341)
Q Consensus 50 ~~~~r~~pl~~~wviia~~R~~RP 73 (341)
+..+|||+.+|.||+.+|++.-..
T Consensus 11 ~~rl~~d~~~~~~vlL~PEgmi~L 34 (88)
T PRK02079 11 GYRFQWEPAQNCHVLLYPEGMIKL 34 (88)
T ss_pred CcccccccccCceEEEcCCeeeee
Confidence 557899999999999999987654
No 54
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=34.30 E-value=47 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.9
Q ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHH
Q psy10444 287 PFETMILPRTHVLRFTDLDDQQRNNLA 313 (341)
Q Consensus 287 p~e~~I~Pk~H~~~~~~l~~~e~~~La 313 (341)
-.+-+|+|.+..+ +|+++++.++|
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~~va 75 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLDAVA 75 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHHHhh
Confidence 3467899998887 89999998876
No 55
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.13 E-value=46 Score=29.79 Aligned_cols=31 Identities=16% Similarity=0.457 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q psy10444 10 RFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMG 46 (341)
Q Consensus 10 ~l~~~~~~e~~~la~~lk~~~~~~d~lf~~~~pY~M~ 46 (341)
+|.+||++|...|. .+...|..-|| |||++.
T Consensus 97 GLd~Ls~~E~a~f~----~LN~aY~~rFg--fPfI~a 127 (176)
T COG3195 97 GLDRLSPEEFARFT----ELNAAYVERFG--FPFIIA 127 (176)
T ss_pred CcccCCHHHHHHHH----HHHHHHHHhcC--CceEEe
Confidence 48899999987765 47888999998 888883
No 56
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=29.29 E-value=29 Score=24.65 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q psy10444 92 KNPLCPTATR 101 (341)
Q Consensus 92 ~CPFCpg~e~ 101 (341)
.||||-|..+
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 5999988543
No 57
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=28.26 E-value=18 Score=29.11 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q psy10444 89 FDPKNPLCPTAT 100 (341)
Q Consensus 89 ~~~~CPFCpg~e 100 (341)
+|..||||-.-.
T Consensus 3 YDg~C~lC~~~~ 14 (114)
T PF04134_consen 3 YDGDCPLCRREV 14 (114)
T ss_pred ECCCCHhHHHHH
Confidence 578999998864
No 58
>PF14317 YcxB: YcxB-like protein
Probab=28.08 E-value=98 Score=21.34 Aligned_cols=38 Identities=16% Similarity=0.435 Sum_probs=24.5
Q ss_pred EEECCcEEEEecCCCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHH
Q psy10444 270 VVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIK 317 (341)
Q Consensus 270 V~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~l~~~e~~~La~~l~ 317 (341)
|.++++.+.+. ..+...+++||+ . +++++..++...|+
T Consensus 25 v~e~~~~~~l~----~~~~~~~~iPk~---~---f~~~e~~~f~~~lk 62 (62)
T PF14317_consen 25 VVETKDYFYLY----LGKNQAFIIPKR---A---FSEEEKEEFREFLK 62 (62)
T ss_pred EEEeCCEEEEE----ECCCeEEEEEHH---H---CCHhHHHHHHHHhC
Confidence 55556555553 156688999996 2 34677777777653
No 59
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.98 E-value=36 Score=24.24 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy10444 12 TDLDDQQRNNLADIIKKIT 30 (341)
Q Consensus 12 ~~~~~~e~~~la~~lk~~~ 30 (341)
.+||++|-.+|+++|+.++
T Consensus 33 vEl~~~Ea~~L~~~l~~vt 51 (51)
T PF11314_consen 33 VELNPDEAKELGEALKEVT 51 (51)
T ss_pred EEeCHHHHHHHHHHHHhcC
Confidence 5799999999999998753
No 60
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=25.74 E-value=2e+02 Score=29.26 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=22.7
Q ss_pred CceEEEeeecCcCCCCCCCccccceeecC
Q psy10444 186 YEWVQIFENKGAIMGCSNPHPHCQVWASS 214 (341)
Q Consensus 186 i~Yv~iFkN~G~~aGaSl~HPHsQiia~p 214 (341)
-.|.-||=|. --|.||..|-|.|.+-++
T Consensus 216 ~p~frvgYNS-lGA~ASvNHLHFQa~yl~ 243 (403)
T PLN03103 216 NPYFRVGYNS-LGAFATINHLHFQAYYLA 243 (403)
T ss_pred CCcEEEEecC-CccccCcceeeeeecccC
Confidence 3566689998 667779999999999874
No 61
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=25.03 E-value=1.9e+02 Score=22.95 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCeEEEECCcEEEEecCCCCCCceEEEEeCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHhHhC
Q psy10444 266 RDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTD---LDDQQRNNLADIIKKITTKYDNLFK 328 (341)
Q Consensus 266 ~~rvV~~~~~~~a~~p~~~~~p~e~~I~Pk~H~~~~~~---l~~~e~~~La~~l~~v~~~l~~~~~ 328 (341)
...+.......=.+++| ++.+|......... |+......|+.+|...+++|++.||
T Consensus 30 aN~~~V~~S~~Ef~ldF-------~~~~p~~~~~~v~sRVimsP~~AKrL~~aL~~~l~~YE~~fG 88 (92)
T PF11950_consen 30 ANFAQVSHSPEEFILDF-------IQQMPGRPEAKVSSRVIMSPQHAKRLLKALQQNLQKYEQRFG 88 (92)
T ss_pred cceEEeccCcceEEEEC-------hhhcCCCCccceEEEEEeCHHHHHHHHHHHHHHHHHHHHHcC
No 62
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=21.11 E-value=68 Score=24.75 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=17.6
Q ss_pred ccceeecccCCcEEEEccCCC
Q psy10444 50 HQHVRYNPLKGEWILVSPHRM 70 (341)
Q Consensus 50 ~~~~r~~pl~~~wviia~~R~ 70 (341)
+.-+|+|...|+||++.|++.
T Consensus 6 ~~r~~~~~v~~~~Vl~~p~~~ 26 (81)
T TIGR03859 6 GYRLQWERAQDCYVLLYPEGM 26 (81)
T ss_pred CeeeeeccccCcEEEEcCCce
Confidence 346889999999999999753
No 63
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=20.10 E-value=82 Score=24.13 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhcCCCccchh
Q psy10444 220 PRIKDIHQREYYQTHGKPLLMDY 242 (341)
Q Consensus 220 ~~~el~~~~~y~~~~g~c~fc~i 242 (341)
+..+++.+.+-.++.+.|++|++
T Consensus 22 I~~~~~~i~~~ld~~~~ClL~e~ 44 (70)
T PF10372_consen 22 IEEEISQIIQTLDEDDCCLLCEF 44 (70)
T ss_dssp HHHHHHHHHHHTT-TT--GGGGH
T ss_pred HHHHHHHHHHHhccCCceechhH
Confidence 44566666666778899999987
Done!