RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10444
(341 letters)
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase,
galactose metabolism; HET: GDU; 1.80A {Escherichia coli}
SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Length = 348
Score = 251 bits (641), Expect = 1e-81
Identities = 143/290 (49%), Positives = 187/290 (64%), Gaps = 16/290 (5%)
Query: 49 EHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNP 108
+H H RYNPL G+WILVSPHR KRPW G +E + + DP LC R G+ NP
Sbjct: 8 DHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDKNP 67
Query: 109 NYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEI 168
+Y +VF NDF AL+ + P P DPL + +A G +VICF P + TLP +S+ +
Sbjct: 68 DYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 127
Query: 169 RKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQR 228
+++ TW ++TA LGKTY WVQ+FENKGA MGCSNPHP Q+WA+SFLPN +D Q+
Sbjct: 128 TEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWANSFLPNEAEREDRLQK 187
Query: 229 EYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPF 288
EY+ P+L+DYV +EL R VV W+ VVP+WA WPF
Sbjct: 188 EYFAEQKSPMLVDYVQRELADGS----------------RTVVETEHWLAVVPYWAAWPF 231
Query: 289 ETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 338
ET++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 232 ETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 281
Score = 46.2 bits (108), Expect = 7e-06
Identities = 30/49 (61%), Positives = 41/49 (83%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHE 49
++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 234 LLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHG 282
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc,
AMP, structural genomics, protein structure initiative,
CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP:
d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Length = 351
Score = 218 bits (556), Expect = 5e-69
Identities = 65/300 (21%), Positives = 115/300 (38%), Gaps = 35/300 (11%)
Query: 49 EHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNG---- 104
+ +R +P+ W++ SP R KRP + + P C +
Sbjct: 21 QSPELRKDPVTNRWVIFSPARAKRPTDFKSKS--PQNPNPKPSSCPFCIGREQECAPELF 78
Query: 105 ---EVNPNYDSVFVFNNDFPALLENVPSPPVQD-DPLFKMGNASGVCKVICFHPKSNTTL 160
+ +PN+ + V N +PAL N+ + Q + G V+ P + L
Sbjct: 79 RVPDHDPNWK-LRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQL 137
Query: 161 PIMSIEEIRKVIDTWVDETASLGKT--YEWVQIFENKGAIMGCSNPHPHCQVWASSFLPN 218
+ I ++ + + + ++Q+F+N+GA G S H H Q+ A +P
Sbjct: 138 SDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPP 197
Query: 219 LPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVV 278
+ ++Y++ GK L + SK V+ + +V
Sbjct: 198 TVSSRLDGTKDYFEETGKCCLCEAKSKH---------------------FVIDESSHFVS 236
Query: 279 VVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 338
V PF A +PFE I+P+ H F LDD + +L ++K + K PY+ H
Sbjct: 237 VAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLN-DPPYNYMIH 295
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 50/200 (25%)
Query: 125 ENVPSPPVQDDPLFKMGNASGV--CKVICFHPKSNTTLPIMSIEEI------RKVIDTWV 176
E VPSP M + S + +V + K+N+ LP EI + ++ V
Sbjct: 332 EGVPSP---------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---V 379
Query: 177 DET---ASLGKTYEWVQIFENKGAIMGCSNPH-PHCQ---VWASSFLP-NLPRIKDIHQR 228
+ SL Y A G P + +++ FLP P H
Sbjct: 380 --SGPPQSL---YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP----FH-S 429
Query: 229 EYYQTHGKPLLMDYVSKELLKRKQPTSVAVW-------LKELLKRDRVVVRNPDWVVVVP 281
+ D V + + + V+ L+ L + R D ++ +P
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL--SGSISERIVDCIIRLP 487
Query: 282 FWAEWPFETMILPRTHVLRF 301
+W T TH+L F
Sbjct: 488 --VKWE-TTTQFKATHILDF 504
Score = 39.3 bits (91), Expect = 0.002
Identities = 46/332 (13%), Positives = 91/332 (27%), Gaps = 107/332 (32%)
Query: 29 ITTKYDNLFKVSF--PYSMGFHEHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPI 86
+T + +L + P + F Q L+ ++ + P + + E + + +
Sbjct: 9 LTLSHGSL-EHVLLVPTASFFIASQ------LQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 87 AEFDPKNPLCPTATRGNGEVNPNYDSVFV-----FNNDFPALLENVPSPPVQDDPLFKMG 141
+F L ++ +D V F N + L N D
Sbjct: 62 GKF-----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGN--------D------ 100
Query: 142 NASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTYEWVQIFENKGAIMGC 201
I H L + + + +L KT E ++ + +
Sbjct: 101 --------I--H-----AL-AAKLLQ---------ENDTTLVKTKELIKNYITARIMAKR 135
Query: 202 SNPHPHCQVWASSFLPNLPRIKDIH-------Q----------REYYQTHGKPLLMDYVS 244
S+ + + Q R+ YQT+ L+ D +
Sbjct: 136 PFDKKS----NSALFRAVGE-GNAQLVAIFGGQGNTDDYFEELRDLYQTY-HVLVGDLIK 189
Query: 245 K--ELLKR--KQPTS----------VAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFET 290
E L + + WL + + D+++ +P P
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWL-----ENPSNTPDKDYLLSIPI--SCPLIG 242
Query: 291 MI-LPRTHVLRFTDLDDQQRNNLADIIKKITT 321
+I L H + L L +K T
Sbjct: 243 VIQL--AHYVVTAKLLGFTPGELRSYLKGATG 272
Score = 34.6 bits (79), Expect = 0.059
Identities = 21/138 (15%), Positives = 30/138 (21%), Gaps = 28/138 (20%)
Query: 202 SNPHPHCQVWASSFLPNLPRIKDIHQREYYQTHGKPLL---MDYVSKELLKRKQPTSVAV 258
+ F LP + + T L+ + YVS + K V
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 259 WLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRT--HVLRFTDLDDQQRNNLADII 316
L L FE L H L L + L
Sbjct: 84 -LNLCLTE---------------------FENCYLEGNDIHALAAK-LLQENDTTLVKTK 120
Query: 317 KKITTKYDNLFKVSFPYS 334
+ I P+
Sbjct: 121 ELIKNYITARIMAKRPFD 138
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics,
joint center for structu genomics, JCSG; HET: MSE; 1.65A
{Methylobacillus flagellatus} SCOP: d.13.1.1
Length = 154
Score = 39.0 bits (91), Expect = 5e-04
Identities = 9/65 (13%), Positives = 26/65 (40%)
Query: 264 LKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKY 323
++ ++ VV ++P ++ HV +DL +R++L ++ +
Sbjct: 17 TAGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAV 76
Query: 324 DNLFK 328
+ +
Sbjct: 77 REVMR 81
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVS-FPYSMG----FHEHQHV-- 53
++ HV +DL +R++L ++ + + + + H H HV
Sbjct: 44 RVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLASLGNMTPHVHWHVIP 103
Query: 54 RYN 56
R+
Sbjct: 104 RFK 106
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein,
putative human tumor suppressor, advanced photon source,
APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB:
1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Length = 147
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMG-----------FHE 49
++ P V RF DL + +L +++ T + F + + H
Sbjct: 37 LVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGT-SLTFSMQDGPEAGQTVKHV 95
Query: 50 HQHV--RYN 56
H HV R
Sbjct: 96 HVHVLPRKA 104
Score = 35.0 bits (81), Expect = 0.012
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 290 TMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVS 330
++ P V RF DL + +L +++ T + F +
Sbjct: 36 VLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGT 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 39/264 (14%), Positives = 80/264 (30%), Gaps = 70/264 (26%)
Query: 104 GEVNPNY-DSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICF--HPKSNTTL 160
GE Y D + VF + F ++N VQD P + I S T
Sbjct: 12 GEHQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLR 66
Query: 161 PIMSIEEIRK-VIDTWVDETASLGKTYEWV--QI-FENKGAIMGCSNPHPHCQVWASSFL 216
++ ++ ++ +V+E L Y+++ I E +
Sbjct: 67 LFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQ-------------------- 104
Query: 217 PNLPRIKDIHQREYYQTHGKPLLMDYVS--------KELLKRKQPTS-VAV--------- 258
P++ I QR+ + VS ++ L +P V +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 259 WL-KELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIK 317
W+ ++ +V + + FW L+ + + L ++
Sbjct: 165 WVALDVCLSYKVQCKMDFKI----FWLN-------------LKNCNSPETVLEMLQKLLY 207
Query: 318 KITTKYDNLFKVSFPYSMGFHVCK 341
+I + + S + H +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQ 231
Score = 29.8 bits (66), Expect = 1.4
Identities = 47/395 (11%), Positives = 98/395 (24%), Gaps = 149/395 (37%)
Query: 14 LDDQQRNNLAD-------IIKKITTKYDNLF----------KVSFPYSMGFHE------- 49
L + Q + I+ +TT++ + +SM
Sbjct: 250 LLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 50 ------------HQHVRYNPLK----GEWILVSPHRMKRPW--SGQEEKSN--EDPIAEF 89
+ + NP + E I W ++ + E +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVL 366
Query: 90 DPKNPLCPTATRGNGEVNPNYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKV 149
+P E +D + VF ++P+
Sbjct: 367 EPA------------EYRKMFDRLSVFPPS-----AHIPTI------------------- 390
Query: 150 ICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPH---- 205
L ++ + I+ + V++ +
Sbjct: 391 ---------LLSLIWFDVIKSDVMVVVNK-------------LHKYSLVEKQPKESTISI 428
Query: 206 PHCQVWASSFLPNLPRIKDIHQR--EYYQTH--------GKPLLMDYVSKEL---LKRKQ 252
P + L +H+ ++Y P L Y + LK +
Sbjct: 429 PSIYL---ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 253 PTSVAVWLKELLKRDRVV---VRNPDWVVVVPFWAEWPFETMILPRTHVLRF-----TDL 304
+ + R + +R+ W IL L+F D
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDS--------TAWNASGSILNTLQQLKFYKPYICDN 537
Query: 305 D---DQQRNNLADIIKK-----ITTKYDNLFKVSF 331
D ++ N + D + K I +KY +L +++
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, STR genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 36.5 bits (84), Expect = 0.003
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 261 KELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKIT 320
L + + P V+V A +P+ ++ R + DLD+ Q+ L I +++
Sbjct: 12 SRLKEDTIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVS 71
Query: 321 TKYDNLFK 328
+ K
Sbjct: 72 RALKEITK 79
Score = 33.8 bits (77), Expect = 0.029
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFK-----VSFPYSMGFHEHQHV-- 53
++ R + DLD+ Q+ L I +++ + K ++ ++ H H+
Sbjct: 42 LVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIA 101
Query: 54 RYN 56
R
Sbjct: 102 RRT 104
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase;
HET: PG4; 1.89A {Mycobacterium tuberculosis}
Length = 218
Score = 37.3 bits (86), Expect = 0.004
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 240 MDYVSKELLKRKQPTSVAV------WLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMIL 293
M+Y+++ +KR +S + + + VV R V+ + P M++
Sbjct: 51 MNYLAEAPVKRDPNSSASPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVV 110
Query: 294 PRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHVC 340
P V DL D + L +K N+ + GF+V
Sbjct: 111 PYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPH-----GFNVG 152
Score = 33.8 bits (77), Expect = 0.052
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 33/114 (28%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFP--YSMG------------ 46
M++P V DL D + L +K + VS P +++G
Sbjct: 108 MVVPYRRVSELEDLTDLESAELMAFTQKAIRV---IKNVSRPHGFNVGLNLGTSAGGSLA 164
Query: 47 FHEHQHV--RYN------PLKGEWILVSP-------HRMKRPWSGQEEKSNEDP 85
H H HV R+ + G V P + W+ Q + +
Sbjct: 165 EHLHVHVVPRWGGDANFITIIGG-SKVIPQLLRDTRRLLATEWARQPKLVDLQS 217
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Length = 135
Score = 35.4 bits (81), Expect = 0.007
Identities = 6/68 (8%), Positives = 18/68 (26%)
Query: 261 KELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKIT 320
+ L + + + + WP+ ++ R + +L + L +
Sbjct: 9 ERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVA 68
Query: 321 TKYDNLFK 328
Sbjct: 69 AGLKKATG 76
Score = 30.4 bits (68), Expect = 0.34
Identities = 7/63 (11%), Positives = 15/63 (23%), Gaps = 7/63 (11%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPY-----SMGFHEHQHV-- 53
++ R + +L + L + ++ H HV
Sbjct: 39 LVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIA 98
Query: 54 RYN 56
R
Sbjct: 99 RRE 101
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Length = 137
Score = 35.0 bits (80), Expect = 0.011
Identities = 9/68 (13%), Positives = 25/68 (36%)
Query: 261 KELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKIT 320
+ L + + V++ WP+ ++ + + +L ++Q+ L ++
Sbjct: 7 ERLAADTHKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALS 66
Query: 321 TKYDNLFK 328
LF
Sbjct: 67 EGMMELFG 74
Score = 31.5 bits (71), Expect = 0.18
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFK-----VSFPYSMGFHEHQHV-- 53
++ + + +L ++Q+ L ++ LF V+ +M H H
Sbjct: 37 LVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIV 96
Query: 54 RYN 56
RY
Sbjct: 97 RYQ 99
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; 1.50A {Vibrio fischeri ES114}
Length = 149
Score = 32.3 bits (73), Expect = 0.095
Identities = 8/68 (11%), Positives = 22/68 (32%)
Query: 261 KELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKIT 320
L + V+ P V++ P+ ++ + + D+Q+ +
Sbjct: 7 PRLQQDCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVA 66
Query: 321 TKYDNLFK 328
++ F
Sbjct: 67 QLLEDNFS 74
Score = 30.8 bits (69), Expect = 0.29
Identities = 6/63 (9%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFK-----VSFPYSMGFHEHQHV-- 53
++ + + D+Q+ + ++ F + ++ H H
Sbjct: 37 LVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIA 96
Query: 54 RYN 56
R+
Sbjct: 97 RFT 99
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 30.8 bits (70), Expect = 0.28
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMG-----------FHE 49
+++P+ H + + D+ LA ++K ++ + K + FH
Sbjct: 37 LVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADG-LRLLTNIGRSAGQVIFHL 95
Query: 50 HQHV 53
H H+
Sbjct: 96 HVHI 99
Score = 29.6 bits (67), Expect = 0.76
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 290 TMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVS 330
T+++P+ H + + D+ LA ++K ++ + K
Sbjct: 36 TLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKAD 76
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 30.2 bits (68), Expect = 0.46
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
D + R+ +V F+A W
Sbjct: 18 DEELERDKRVTWIVEFFANW 37
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 29.4 bits (66), Expect = 0.78
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
D + R D V+++
Sbjct: 28 DDWIKRVGDGVILLSSDPRR 47
>3r6f_A HIT family protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Length = 135
Score = 29.2 bits (66), Expect = 1.0
Identities = 5/34 (14%), Positives = 17/34 (50%)
Query: 290 TMILPRTHVLRFTDLDDQQRNNLADIIKKITTKY 323
+++P+ H + ++ + + D I+ + K+
Sbjct: 41 FLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKF 74
Score = 28.1 bits (63), Expect = 2.5
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKY 33
+++P+ H + ++ + + D I+ + K+
Sbjct: 42 LVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKF 74
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 28.1 bits (63), Expect = 2.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
+V D VV+ + +W
Sbjct: 29 WPIVKAAGDKPVVLDMFTQW 48
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium
paratuberculosis, STR genomics; 1.90A {Mycobacterium
avium subsp}
Length = 138
Score = 28.0 bits (63), Expect = 2.2
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 290 TMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKV 329
T+++PR + + D+D N + + + I F+
Sbjct: 42 TLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRT 81
Score = 27.6 bits (62), Expect = 2.9
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 2 ILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMG-----FHEHQHV 53
++PR + + D+D N + + + I F+ + H H HV
Sbjct: 44 VVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLIIAGLEVPHLHVHV 100
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 27.6 bits (62), Expect = 2.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V D ++V FWAEW
Sbjct: 16 VLKADGAILVDFWAEW 31
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 27.7 bits (62), Expect = 2.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
+V D VV+ + +W
Sbjct: 16 WPIVKAAGDKPVVLDMFTQW 35
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 27.8 bits (62), Expect = 2.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V D ++V FWAEW
Sbjct: 17 VLKADGAILVDFWAEW 32
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 271 VRNPDWVVVVPFWAEW 286
V D V+V FWA W
Sbjct: 15 VLKSDKPVLVDFWAPW 30
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 27.4 bits (61), Expect = 3.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V D ++V FWAEW
Sbjct: 36 VLKADGAILVDFWAEW 51
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 26.9 bits (60), Expect = 3.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V +V+V FWAEW
Sbjct: 16 VLKASGLVLVDFWAEW 31
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 27.6 bits (61), Expect = 3.7
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
D+ + + V+V+ F +
Sbjct: 15 DQAIKSTAEKVLVLRFGRDE 34
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 26.9 bits (60), Expect = 3.8
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 271 VRNPDWVVVVPFWAEW 286
D V+V FWA W
Sbjct: 13 AIQGDGPVLVDFWAAW 28
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 27.9 bits (62), Expect = 3.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V D ++V FWAEW
Sbjct: 26 VLKADGAILVDFWAEW 41
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 27.4 bits (61), Expect = 3.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 271 VRNPDWVVVVPFWAEW 286
V + V+V+ F+A+W
Sbjct: 38 VNMKNTVIVLYFFAKW 53
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 26.8 bits (60), Expect = 4.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 271 VRNPDWVVVVPFWAEW 286
V + V+V FWA W
Sbjct: 14 VLESEVPVMVDFWAPW 29
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 26.8 bits (60), Expect = 4.0
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 271 VRNPDWVVVVPFWAEW 286
V V+V FWA W
Sbjct: 15 VLESSVPVLVDFWAPW 30
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 26.9 bits (60), Expect = 4.0
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 271 VRNPDWVVVVPFWAEW 286
+ + +V F +
Sbjct: 18 IYDEGKACLVMFSRKN 33
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; 1.60A {Agrobacterium tumefaciens str} SCOP:
d.116.1.1
Length = 181
Score = 27.7 bits (61), Expect = 4.0
Identities = 6/47 (12%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 147 CKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTYEWVQIFE 193
+++ HP SN ++ +++ + ++ + G +++ E
Sbjct: 142 NELVNGHPLSNDQTTTIASKDLIRFLE-------ATGHAPLVLKVSE 181
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 26.8 bits (60), Expect = 4.1
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
++++ N ++VV F+A+W
Sbjct: 11 EKLINENKGRLIVVDFFAQW 30
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 27.5 bits (61), Expect = 4.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
+ ++ ++VV FWA W
Sbjct: 24 EELLRLKAKSLLVVHFWAPW 43
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 28.0 bits (62), Expect = 4.2
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 241 DYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDW 276
+ L + K+ + WLKE + + + +
Sbjct: 274 GGIQNILYRDKEEDTFHRWLKESRAEIPIQIFDEAY 309
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 26.9 bits (60), Expect = 4.3
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 271 VRNPDWVVVVPFWAEW 286
+V+V FWAEW
Sbjct: 14 TLGQHPLVLVDFWAEW 29
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 26.9 bits (60), Expect = 4.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V N + VVV F A+W
Sbjct: 27 VVNSETPVVVDFHAQW 42
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 26.9 bits (60), Expect = 4.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 271 VRNPDWVVVVPFWAEW 286
V D V+V FWA W
Sbjct: 19 VLKNDKPVLVDFWAAW 34
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 26.9 bits (60), Expect = 4.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V + + V+V FWA W
Sbjct: 26 VLSSNKPVLVDFWATW 41
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 26.5 bits (59), Expect = 5.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V + +V+V WAEW
Sbjct: 17 VIRNNKLVLVDCWAEW 32
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 26.5 bits (59), Expect = 5.0
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 271 VRNPDWVVVVPFWAEW 286
+ VV FWAEW
Sbjct: 12 FLASHEIAVVDFWAEW 27
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 26.9 bits (60), Expect = 5.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 271 VRNPDWVVVVPFWAEW 286
V + V+V FWA W
Sbjct: 21 VLKAEQPVLVYFWASW 36
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 26.6 bits (59), Expect = 5.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
++ +V+V F+A W
Sbjct: 19 IKEAPGLVLVDFFATW 34
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 27.0 bits (60), Expect = 5.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 271 VRNPDWVVVVPFWAEW 286
V + VVV F++
Sbjct: 20 VEDSKKPVVVMFYSPA 35
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 26.5 bits (59), Expect = 6.6
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
+ ++ ++ + +VVV F+A W
Sbjct: 25 ESLLEQHKNKLVVVDFFATW 44
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 27.3 bits (61), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 54 RYNPLKGEWILVSPHRMKRPWSG 76
YNP KG+W ++P MK P S
Sbjct: 179 IYNPKKGDWKDLAP--MKTPRSM 199
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 26.7 bits (59), Expect = 7.2
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 271 VRNPDWVVVVPFWAEW 286
D ++V FWA W
Sbjct: 60 AERDDLPLLVDFWAPW 75
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 26.6 bits (59), Expect = 7.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 270 VVRNPDWVVVVPFWAEW 286
V VV F+A W
Sbjct: 16 KVLQGKTHWVVDFYAPW 32
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 26.6 bits (59), Expect = 7.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 271 VRNPDWVVVVPFWAEW 286
+ D +V+ FWA W
Sbjct: 51 LLQDDLPMVIDFWAPW 66
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 26.1 bits (58), Expect = 7.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
D + + +VV+ F+A W
Sbjct: 12 DGQLTKASGKLVVLDFFATW 31
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 26.1 bits (58), Expect = 8.5
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 275 DWVVVVPFWAEW 286
+ VV+ FWA W
Sbjct: 17 EGVVLADFWAPW 28
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 26.6 bits (59), Expect = 8.6
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
+ V P + +V F+A W
Sbjct: 44 AQEVAGAP--LTLVDFFAPW 61
>4a57_A Nucleoside-triphosphatase 1; hydrolase; 2.00A {Toxoplasma gondii}
PDB: 4a59_A* 4a5a_A* 4a5b_A 3agr_A
Length = 611
Score = 27.4 bits (59), Expect = 8.6
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 13/143 (9%)
Query: 203 NPHPHCQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKR-----------K 251
S ++ I + + + L Y K+ R
Sbjct: 60 KTRSCPNKGRSIDPDSIQLIGAGKRFAGLRVVLEEWLDTYAGKDWESRPVDARLLFQYVP 119
Query: 252 QPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNN 311
Q A L +LL+ D V + + + ++L T +R + R+
Sbjct: 120 QMHEGAKKLMQLLEEDTVAILDSQLNEKQKVQVKALGIPVMLCSTAGVRD--FHEWYRDA 177
Query: 312 LADIIKKITTKYDNLFKVSFPYS 334
L +++ + F +
Sbjct: 178 LFVLLRHLINNPSPAHGYKFFTN 200
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 27.0 bits (60), Expect = 8.8
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 54 RYNPLKGEWILVSPHRMKRPWSG 76
Y+P K EW ++P M+ S
Sbjct: 169 VYDPKKFEWKELAP--MQTARSL 189
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 26.2 bits (58), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 271 VRNPDWVVVVPFWAEW 286
V D VVV+ FWA W
Sbjct: 29 VTGGDKVVVIDFWATW 44
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg
IONS, pyrophosphate, transition state analogue; HET:
IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB:
1dqp_A*
Length = 230
Score = 26.8 bits (60), Expect = 9.7
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 240 MDYVSKELLKRKQPTSVAVWLKELLKRDRVVVR-NPDWV 277
+ + +E +K + S V + +K+ + +
Sbjct: 134 IFSI-QEQIKHAKICSCFVKDVDAIKKHSALADTKMFYG 171
>1vjf_A DNA-binding protein, putative; structural genomics, joint center
for S genomics, JCSG, protein structure initiative, PSI;
HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP:
d.116.1.1
Length = 180
Score = 26.5 bits (58), Expect = 10.0
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 147 CKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTYEWV 189
+ FHP N +S +R+ + +LG V
Sbjct: 136 SDPVNFHPLKNDATTAVSQAGLRRFLA-------ALGVEPMIV 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.442
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,613,929
Number of extensions: 338887
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 76
Length of query: 341
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 247
Effective length of database: 4,077,219
Effective search space: 1007073093
Effective search space used: 1007073093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)