RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10444
(341 letters)
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 176
Score = 210 bits (535), Expect = 2e-68
Identities = 88/170 (51%), Positives = 113/170 (66%)
Query: 49 EHQHVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNP 108
+H H RYNPL G+WILVSPHR KRPW G +E + + DP LC R G+ NP
Sbjct: 7 DHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDKNP 66
Query: 109 NYDSVFVFNNDFPALLENVPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEI 168
+Y +VF NDF AL+ + P P DPL + +A G +VICF P + TLP +S+ +
Sbjct: 67 DYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 126
Query: 169 RKVIDTWVDETASLGKTYEWVQIFENKGAIMGCSNPHPHCQVWASSFLPN 218
+++ TW ++TA LGKTY WVQ+FENKGA MGCSNPHP Q+WA+SFLPN
Sbjct: 127 TEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWANSFLPN 176
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 173
Score = 176 bits (448), Expect = 2e-55
Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 13/175 (7%)
Query: 52 HVRYNPLKGEWILVSPHRMKRPWSGQEEKSNEDPIAEFDPKNPLCPTATRG-------NG 104
+R +P+ W++ SP R KRP + + P C +
Sbjct: 2 ELRKDPVTNRWVIFSPARAKRPTDFKSKSPQNPN--PKPSSCPFCIGREQECAPELFRVP 59
Query: 105 EVNPNYDSVFVFNNDFPALLENVPSPPVQD-DPLFKMGNASGVCKVICFHPKSNTTLPIM 163
+ +PN+ + V N +PAL N+ + Q + G V+ P + L +
Sbjct: 60 DHDPNWK-LRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDI 118
Query: 164 SIEEIRKVIDTWVDETASLGKT--YEWVQIFENKGAIMGCSNPHPHCQVWASSFL 216
I ++ + + + ++Q+F+N+GA G S H H Q+ A +
Sbjct: 119 DPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVV 173
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 85.5 bits (211), Expect = 1e-20
Identities = 55/119 (46%), Positives = 74/119 (62%), Gaps = 16/119 (13%)
Query: 220 PRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDWVVV 279
+D Q+EY+ P+L+DYV +EL R VV W+ V
Sbjct: 2 AEREDRLQKEYFAEQKSPMLVDYVQRELADGS----------------RTVVETEHWLAV 45
Query: 280 VPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 338
VP+WA WPFET++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 46 VPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWH 104
Score = 38.1 bits (88), Expect = 6e-04
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 11/68 (16%)
Query: 1 MILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFHE----------- 49
++LP+ HVLR TDL D QR++LA +KK+T++YDNLF+ SFPYSMG+H
Sbjct: 57 LLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHW 116
Query: 50 HQHVRYNP 57
H + P
Sbjct: 117 QLHAHFYP 124
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 156
Score = 56.3 bits (135), Expect = 2e-10
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 21/122 (17%)
Query: 217 PNLPRIKDIHQREYYQTHGKPLLMDYVSKELLKRKQPTSVAVWLKELLKRDRVVVRNPDW 276
P + ++Y++ GK L + SK V+ + +
Sbjct: 1 PPTVSSRLDGTKDYFEETGKCCLCEAKSKH---------------------FVIDESSHF 39
Query: 277 VVVVPFWAEWPFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMG 336
V V PF A +PFE I+P+ H F LDD + +L ++K + K M
Sbjct: 40 VSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMI 99
Query: 337 FH 338
Sbjct: 100 HT 101
>d1yvua1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 311
Score = 29.7 bits (66), Expect = 0.56
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 249 KRKQPTSVAVWLKELLKRDRVVVRNPDWVVVVPFWAEWPFETMILPRTHVLRFTDLDDQQ 308
+ +S W +ELLK + R ++VV+ +P T++ P VL + +L+D++
Sbjct: 213 RSTHKSSKKAW-EELLKNREL--REKAFLVVLEKGYTYP-ATILKP---VLTYENLEDEE 265
Query: 309 RNNLADIIKKITTKYDNLFK 328
RN +ADI++ K NL +
Sbjct: 266 RNEVADIVRMEPGKRLNLIR 285
Score = 27.7 bits (61), Expect = 2.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 8 VLRFTDLDDQQRNNLADIIKKITTKYDNLFK 38
VL + +L+D++RN +ADI++ K NL +
Sbjct: 255 VLTYENLEDEERNEVADIVRMEPGKRLNLIR 285
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli,
beta-isoform [TaxId: 562]}
Length = 90
Score = 26.7 bits (59), Expect = 1.4
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 22 LADIIKKITTKYDNLFKVSFPYSMGF---HEHQHVRYNPLKGEWILVSPHR 69
L II +T V+ F NP G+ I ++ +
Sbjct: 25 LDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAK 75
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 25.9 bits (56), Expect = 4.0
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 267 DRVVVRNPDWVVVVPFWAEW--PFETMILPRTHVLRFTDLDDQQRNNLADIIKKITTKY 323
+V D VV+ + +W P + M + + + K + +
Sbjct: 17 WPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKEL 75
>d3c5zd2 d.19.1.1 (D:1-120) Class II MHC beta chain, N-terminal
domain {Mouse (Mus musculus), I-AB [TaxId: 10090]}
Length = 120
Score = 25.5 bits (56), Expect = 5.6
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 38 KVSFPYSMGFHEHQHVRYNPLKGEWILVSPHRMK--RPWSGQEE 79
++ + ++ ++VRY+ GE V+ W+ Q E
Sbjct: 49 RIRYVTRYIYNREEYVRYDSDVGEHRAVTELGRPDAEYWNSQPE 92
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 26.1 bits (56), Expect = 6.2
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 16/193 (8%)
Query: 71 KRPWSGQEEKSNEDPIAEFDPKNPLCPTATRGNGEVNPN----YDSVFVFNNDFPALLEN 126
RP++ E K++ I E DP T G + + +D VF + + +
Sbjct: 8 CRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRS 67
Query: 127 VPSPPVQDDPLFKMGNASGVCKVICFHPKSNTTLPIMSIEEIRKVIDTWVDETASLGKTY 186
V P + + + N + T + + D A +
Sbjct: 68 VVCPILDE--VIMGYN---CTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRT 122
Query: 187 EWVQIFENKGAIMGCSNPHPHCQVWASSFLPNLPRIKDIHQREYYQTHGKPLLMDYVSKE 246
QIFE ++ V S + D+ + + D +K
Sbjct: 123 LH-QIFEK------LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 175
Query: 247 LLKRKQPTSVAVW 259
+ K + V
Sbjct: 176 GVIIKGLEEITVH 188
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 25.5 bits (55), Expect = 6.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 267 DRVVVRNPDWVVVVPFWAEW 286
D+ ++ D VVV+ F +W
Sbjct: 14 DQAILSEEDRVVVIRFGHDW 33
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 25.9 bits (56), Expect = 6.8
Identities = 21/167 (12%), Positives = 48/167 (28%), Gaps = 17/167 (10%)
Query: 189 VQIFENKGAIMGC--SNPHPHCQV------WASSFLPNLPRIKDIHQREYYQTHGKPLLM 240
V + E G + G N +P + + SF + + + +R Q +
Sbjct: 33 VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYIN 92
Query: 241 DYVSKELLKRKQPTSV----AVWLKE-----LLKRDRVVVRNPDWVVVVPFWAEWPFETM 291
K L+ A + + + +R ++ ++ +
Sbjct: 93 FVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL 152
Query: 292 ILPRTHVLRFTDLDDQQRNNLADIIKKITTKYDNLFKVSFPYSMGFH 338
+ L ++ + T + NLF ++ P S
Sbjct: 153 FKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSAL 199
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.442
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,426,329
Number of extensions: 70781
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 23
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)