RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10445
(425 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 283 bits (725), Expect = 2e-94
Identities = 111/238 (46%), Positives = 144/238 (60%), Gaps = 11/238 (4%)
Query: 189 IVGGQNAEQNEWPWVVAIF-NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
IVGG A+ +PW V++ G+ FCGGSLI + VLTAAHCV S + +V LG
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCV---YSSAPSNYTVRLG 57
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
H++ NE KVK+++ H ++ T ND+A+L L +PV SD +R ICLP
Sbjct: 58 SHDL-SSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGY 116
Query: 308 S-YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG- 365
+ G TV GWG E GP P VLQ+VN+P+ +NA+CK Y G I D+ LCAG
Sbjct: 117 NLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSY--GGTITDNMLCAGG 174
Query: 366 -RATKDSCTGDSGGPLMVND-GKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
KD+C GDSGGPL+ ND G+ VGIVSWG GC + YPGVYTRV+ ++ WI K
Sbjct: 175 LEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 280 bits (719), Expect = 2e-93
Identities = 106/236 (44%), Positives = 139/236 (58%), Gaps = 12/236 (5%)
Query: 188 RIVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNL 246
RIVGG A +PW V++ + G+ FCGGSLI + VLTAAHCV D + + V L
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRL 57
Query: 247 GDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGR 306
G H++ E KV +++ H ++ T ND+A+L L +PV SD +R ICLP
Sbjct: 58 GSHDLSSGEEG--QVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSN 115
Query: 307 ASY-EGKIATVIGWGSLRES-GPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
+ G TV GWG E G P LQ+VN+P+ +NA C+ Y G I D+ LCA
Sbjct: 116 YNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSG--GGAITDNMLCA 173
Query: 365 G--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWI 418
G KD+C GDSGGPL+ NDG+W VGIVSWG GC + PGVYTRV+ ++ WI
Sbjct: 174 GGLEGGKDACQGDSGGPLVCNDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 218 bits (558), Expect = 1e-69
Identities = 102/232 (43%), Positives = 136/232 (58%), Gaps = 16/232 (6%)
Query: 189 IVGGQNAEQNEWPWVVAIFN-SGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
IVGG A+ +PW V++ SGK FCGGSLI VLTAAHCV++ S V LG
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVSNAKSVRVV-----LG 55
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPR-GR 306
HNI + + VK+++ H ++ T ND+A+L L PV DT+R ICLP
Sbjct: 56 AHNIVLREGGEQK-FDVKKVIVHPNYNPDT-DNDIALLKLKSPVTLGDTVRPICLPTASS 113
Query: 307 ASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGR 366
G TV GWG+ + G P LQ+V +PV + C++ YG G + D+ +CAG
Sbjct: 114 DLPVGTTCTVSGWGNTKTLGL-PDTLQEVTVPVVSRETCRSAYG----GTVTDNMICAGA 168
Query: 367 ATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWI 418
KD+C GDSGGPL+ +DG+ +GIVSWG GC G YPGVYT V+ ++ WI
Sbjct: 169 GGKDACQGDSGGPLVCSDGE--LIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 124 bits (313), Expect = 9e-32
Identities = 76/256 (29%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 188 RIVGGQNAEQNEWPWVVAIFNSGK-----QFCGGSLIDTQHVLTAAHCVAHMSSWDVAKL 242
RI+GG NA E+P +VA+ + FCGGS + ++VLTAAHC +
Sbjct: 32 RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCA---DASSPISS 88
Query: 243 SVNLGDHNIKQKNEVKHVER-KVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAIC 301
VN + N+ ER V+ + H+ + L ND+A+L L + ++ +
Sbjct: 89 DVNRV---VVDLNDSSQAERGHVRTIYVHEFYSPGNLGNDIAVLELARA----ASLPRVK 141
Query: 302 LPRGRASYEGKI-------ATVIGWGSLRESG-----PQPAVLQKVNIPVWTNADCKARY 349
+ AS T +G S P+ +L +V + + C
Sbjct: 142 ITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYK 201
Query: 350 GPVAPGGIVDHF--LCAGRATKDSCTGDSGGPLMV--NDGKWTQVGIVSWGIG-CGKGEY 404
G CAGR KD+C GDSGGP+ +G+ Q G+VSWG G CG
Sbjct: 202 GCANASDGATGLTGFCAGRPPKDACQGDSGGPIFHKGEEGR-VQRGVVSWGDGGCGGTLI 260
Query: 405 PGVYTRVTYFMPWITK 420
PGVYT V+ + WI
Sbjct: 261 PGVYTNVSNYQDWIAA 276
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 41.2 bits (96), Expect = 5e-04
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 199 EWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDV----AKLSVNLGDHNIKQK 254
WPW+ ++ G C G LID VL V+H WD + +SV LG H
Sbjct: 15 HWPWIAKVYVEGNYRCTGVLIDLSWVL-----VSHSCLWDTSLEHSYISVVLGGHKTL-- 67
Query: 255 NEVKHVERKVKRLVRHKAFDMRTLY-NDVAILTLDKPVKYSDTIRAICLPRGR 306
K V+ +++ R + L + +++L L P +S+ + +P R
Sbjct: 68 ---KSVKGPYEQIYRVDCR--KDLPRSKISLLHLKSPATFSNHVLPTFVPSTR 115
>gnl|CDD|197829 smart00680, CLIP, Clip or disulphide knot domain. Present in
horseshoe crab proclotting enzyme N-terminal domain,
Drosophila Easter and silkworm
prophenoloxidase-activating enzyme.
Length = 52
Score = 31.3 bits (71), Expect = 0.071
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 44 CVTNRGLLGQCLRFKQC---YPYLKLPDFIWEPVIYDSFDSCSYIAPDGTQGVGVCCT 98
C T G G C+ C LK E + + C + G + VCC
Sbjct: 1 CRTPDGERGTCVPISDCPSLLSLLKKDPP--EDLNFLRKSQCGF----GNREPLVCCP 52
>gnl|CDD|213736 TIGR02773, addB_Gpos, helicase-exonuclease AddAB, AddB subunit.
DNA repair is accomplished by several different systems
in prokaryotes. Recombinational repair of
double-stranded DNA breaks involves the RecBCD pathway
in some lineages, and AddAB (also called RexAB) in
other. The AddA protein is conserved between the
firmicutes and the alphaproteobacteria, while the
partner protein is not. Nevertheless, the partner is
designated AddB in both systems. This model describes
the AddB protein as found Bacillus subtilis and related
species. Although the RexB protein of Streptococcus and
Lactococcus is considered to be orthologous,
functionally equivalent, and merely named differently,
all members of this protein family have a P-loop
nucleotide binding motif GxxGxGK[ST] at the N-terminus,
unlike RexB proteins, and a CxxCxxxxxC motif at the
C-terminus, both of which may be relevant to function
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1160
Score = 33.2 bits (76), Expect = 0.36
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 256 EVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAI 300
EV+ V R++ RLVR K R Y D+AILT D P Y D ++A+
Sbjct: 317 EVEGVAREILRLVRDKG--YR--YKDIAILTRD-PEDYKDLVKAV 356
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family
includes trypsin like peptidase domains.
Length = 138
Score = 30.6 bits (69), Expect = 0.71
Identities = 35/178 (19%), Positives = 54/178 (30%), Gaps = 43/178 (24%)
Query: 216 GSLIDTQ-HVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFD 274
G ++ + +LT AH V D +++ V L D R +V A D
Sbjct: 3 GFVVGSDGLILTNAHVVE---DADASEIEVVLPDGG-----------RVPAEVV---AAD 45
Query: 275 MRTLYNDVAILTLDKPVKYSDTIRAICLPRGRASYEGKIATVIGWGSLRESGPQPAVLQK 334
D+A+L +D P+ + + A S + G G G
Sbjct: 46 PDL---DLALLKVDGPLLPAAPLLASSAAPLGGSV-VVVGGPGGIGLGASGGGGGVGGLV 101
Query: 335 VNIPVWTNADCKARYGPVAPGGIVDHFLCAGRATKDSCTGDSGGPLMVNDGKWTQVGI 392
+ +PG SGGP+ DG+ VGI
Sbjct: 102 SGSLGGVDGRYILTDADTSPGS-------------------SGGPVFDADGEV--VGI 138
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 31.7 bits (72), Expect = 0.83
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 100 PLQGGYPI--ISQDLSEEPEIPTYPS-FAFNWPPPVPTHPPDHTPATHPP 146
PL G P D E P YPS F +W P P P D+ +H P
Sbjct: 8 PLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRP 57
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 30.9 bits (70), Expect = 1.0
Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 19/90 (21%)
Query: 96 CCTTPLQGGYP------IISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPSIV 149
P +EEP + P PPP P PP PPS+
Sbjct: 153 SDLLSSDESVPSSSTTSFPISPPTEEPVLEVPP------PPPPPPPPP-------PPSLQ 199
Query: 150 SSTETAHFPTEVPVTTTEAGKVDMSCGQKN 179
ST E + AGK + K+
Sbjct: 200 QSTSAIDLIKERKGQRSAAGKTLVLSKPKS 229
>gnl|CDD|217015 pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family
consists of immunoglobulin A1 protease proteins. The
immunoglobulin A1 protease cleaves immunoglobulin IgA
and is found in pathogenic bacteria such as Neisseria
gonorrhoeae. Not all of the members of this family are
IgA proteases, espP from E. coli O157:H7 cleaves human
coagulation factor V and hbp is a hemoglobin protease
from E. coli EB1.
Length = 758
Score = 30.9 bits (70), Expect = 1.3
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 374 GDSGGPLMVND---GKWTQVGIVSWGIG-CGKGEYPGVYT 409
GDSG PL D KW +G++ G G GKG V
Sbjct: 206 GDSGSPLFAYDNQKKKWVLLGVLDGGAGYGGKGNNWNVTK 245
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 30.8 bits (70), Expect = 1.5
Identities = 11/62 (17%), Positives = 14/62 (22%)
Query: 105 YPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVPVT 164
S S P P+ P P P P P + T P
Sbjct: 202 EDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTP 261
Query: 165 TT 166
+
Sbjct: 262 PS 263
>gnl|CDD|148169 pfam06401, Alpha-2-MRAP_C, Alpha-2-macroglobulin RAP, C-terminal
domain. The alpha-2-macroglobulin receptor-associated
protein (RAP) is a intracellular glycoprotein that binds
to the 2-macroglobulin receptor and other members of the
low density lipoprotein receptor family. The protein
inhibits binding of all currently known ligands of these
receptors. Two different studies have provided
conflicted domain boundaries.
Length = 205
Score = 30.1 bits (68), Expect = 1.5
Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 237 WDVAKLSVNLGDHNIKQ-KNEVKHVERKVKRLVRHKA 272
W +A+ + N + ++ K E+KH E K+++ ++
Sbjct: 117 WKLAQ-NSNFTEKELESLKEELKHFESKLEKHRHYQK 152
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 30.5 bits (69), Expect = 1.9
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 129 PPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVPVTTTEAGKVDMSC--GQKNGYQDLDQ 186
PP V PP P P + + A F E + ++ + S + +
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483
Query: 187 E 187
Sbjct: 484 N 484
>gnl|CDD|216233 pfam00997, Casein_kappa, Kappa casein. Kappa-casein is a mammalian
milk protein involved in a number of important
physiological processes. In the gut, the ingested
protein is split into an insoluble peptide (para
kappa-casein) and a soluble hydrophilic glycopeptide
(caseinomacropeptide). Caseinomacropeptide is
responsible for increased efficiency of digestion,
prevention of neonate hypersensitivity to ingested
proteins, and inhibition of gastric pathogens.
Length = 161
Score = 29.1 bits (65), Expect = 2.5
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 107 IISQDLSEEPEIPTYPSFAFNWPPPVPTHPP----DHTPATHPPSIVSSTETAHFPTEVP 162
I + + ++ IPT + A P PVPT P TP I+S+ ET T V
Sbjct: 100 IPPKKIQDKTAIPTINTIATVEPTPVPTTEPTVNTVVTPEASSEFIISTPET----TTVA 155
Query: 163 VTTTEA 168
VT+ EA
Sbjct: 156 VTSPEA 161
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 29.9 bits (67), Expect = 2.5
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 109 SQDLSEEPEI-PTYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVPVTTT 166
P PT PP P PA+ S E+A +T+
Sbjct: 80 GTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTS 138
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 30.2 bits (68), Expect = 2.5
Identities = 13/60 (21%), Positives = 14/60 (23%), Gaps = 6/60 (10%)
Query: 118 IPTYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHFPTEV------PVTTTEAGKV 171
IP PP P P H P A P + P E K
Sbjct: 397 IPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKA 456
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 29.1 bits (65), Expect = 6.5
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 98 TTPLQGGYPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHF 157
T + + E + P T T P +ST T
Sbjct: 783 TETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSS--PSPTQTTSPTQTSTSTTTTTS 840
Query: 158 PTEVPVTTTEAG 169
P++ TTT G
Sbjct: 841 PSQ---TTTGGG 849
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 28.2 bits (63), Expect = 7.3
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 174 SCGQKN-GYQDLDQERIVGGQNAEQNEWPWVVAI--FNSGKQFCGGSLIDTQHVLTAAH 229
SCG K + I + W A N + I T+H+LT++
Sbjct: 30 SCGNKTLPLPSQNINGIYL--EKSEYPWLVKAAFQNGNQKNYKPPATFISTRHILTSSR 86
>gnl|CDD|221254 pfam11835, DUF3355, Domain of unknown function (DUF3355). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 111 to 177 amino acids in length.
Length = 93
Score = 26.8 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 133 PTHPPDHTPATHPPSIVSSTETAHFPTEVPVTTTEAGKVDM 173
PT P PAT S S A V +T T+ + DM
Sbjct: 23 PTAPEHVFPATTASSAPSIASAAMATP-VSLTETKEAEADM 62
>gnl|CDD|222915 PHA02670, PHA02670, ORF112 putative chemokine-binding protein;
Provisional.
Length = 287
Score = 28.0 bits (62), Expect = 9.1
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 129 PPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVPVTTTEAGKVDMSCGQKNGYQDLD 185
P PT P+ TP+T P + T T+ P TT VD S +K +D
Sbjct: 170 FPEEPTPKPEPTPSTTPGPTLLETTLDL--TDEPTTTP---PVDTSVDRKRNPDPVD 221
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.441
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,606,000
Number of extensions: 2024817
Number of successful extensions: 1771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1725
Number of HSP's successfully gapped: 38
Length of query: 425
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 325
Effective length of database: 6,502,202
Effective search space: 2113215650
Effective search space used: 2113215650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)