RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10445
(425 letters)
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 308 bits (792), Expect = e-104
Identities = 90/246 (36%), Positives = 129/246 (52%), Gaps = 17/246 (6%)
Query: 189 IVGGQNAEQNEWPWVVAIF--NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNL 246
IVGG A E+PW V++ +S FCGGS+I+ + V+ AAHC+ A +S+ +
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCM---QGEAPALVSLVV 57
Query: 247 GDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGR 306
G+H+ + V + ++ +D TL NDV+++ + + + IC P
Sbjct: 58 GEHDSSAAST-VRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPA 116
Query: 307 ASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA- 364
Y + + GWG++ G PAVL+ V + + TNA C A Y I D +CA
Sbjct: 117 NDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYT---SDTIYDDMICAT 173
Query: 365 ---GRATKDSCTGDSGGPLMVN--DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWIT 419
G +DSC GDSGGPL V G ++ VGIVSWGIGC G YPGVY+RV + WIT
Sbjct: 174 DNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASG-YPGVYSRVGFHAGWIT 232
Query: 420 KNLKKN 425
+ N
Sbjct: 233 DTITNN 238
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 307 bits (789), Expect = e-104
Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 8/238 (3%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG +A++ WPWVV ++ + CG SL+ + +++AAHCV + + + +K + LG
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCV-YGRNLEPSKWTAILGL 59
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLP-RGRA 307
H + V R + +V + ++ R ND+A++ L+ V Y+D I+ I LP +
Sbjct: 60 HMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQV 119
Query: 308 SYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
G+ ++ GWG++ G +LQ+ ++P+ +N C+ + I ++ +CAG
Sbjct: 120 FPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMP---EYNITENMICAGYE 176
Query: 368 T--KDSCTGDSGGPLMV-NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNL 422
DSC GDSGGPLM + +W G+ S+G C PGVY RV+ F WI L
Sbjct: 177 EGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 308 bits (791), Expect = e-104
Identities = 84/271 (30%), Positives = 139/271 (51%), Gaps = 29/271 (10%)
Query: 175 CGQKNGYQDLDQERIVGGQNAEQNEWPWVVAI-----FNSGKQFCGGSLIDTQHVLTAAH 229
CG + + ++I+ G + E+PW I N + CGGSLI+ ++++TAAH
Sbjct: 14 CGYQV-----EADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAH 68
Query: 230 CVAHMSSWDVAKL-SVNLGDHNIKQKNEV----------KHVERKVKRLVRHKAFDMRT- 277
CVA V L V LG+ N + K ++ ++ ++H + +
Sbjct: 69 CVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSK 128
Query: 278 -LYNDVAILTLDKPVKYSDTIRAICLPRGRAS-YEGKIATVIGWGSLRESGPQPAVLQKV 335
Y+D+A++ L++ V++++ IR +CLP+ G+ TV+GWG E+G + QK+
Sbjct: 129 DRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKL 187
Query: 336 NIPVWTNADCKARYGPVAPGGIVDHFLCAG-RATKDSCTGDSGGPLMV--NDGKWTQVGI 392
+PV C +G A + LCAG KDSC GDSGGPL+ + ++ G+
Sbjct: 188 AVPVVHAEQCAKTFGA-AGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGL 246
Query: 393 VSWGIGCGKGEYPGVYTRVTYFMPWITKNLK 423
VS+G CG +PG+YT+V + WI N++
Sbjct: 247 VSFGATCGTEGWPGIYTKVGKYRDWIEGNIR 277
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 306 bits (787), Expect = e-104
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 18/245 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFN-SGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
IVGGQ + E PW + N + FCGG+++ ++LTAAHC+ + V +G
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRF-----KVRVG 55
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
D N ++ E +V+ +++H F T D+A+L L P+ + + CLP
Sbjct: 56 DRNT-EQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 308 S----YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLC 363
+ K V G+G E G Q L+ + +P CK I + C
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS----SFIITQNMFC 170
Query: 364 AGRAT--KDSCTGDSGGPLMVND-GKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITK 420
AG T +D+C GDSGGP + + GIVSWG GC + G+YT+VT F+ WI +
Sbjct: 171 AGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDR 230
Query: 421 NLKKN 425
++K
Sbjct: 231 SMKTR 235
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 306 bits (785), Expect = e-103
Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 11/245 (4%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG+ + E PW V + +G Q CGG+LI+T V++AAHC + +W L LG+
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNW--RNLIAVLGE 58
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
H++ +++ R+V +++ + T +D+A+L L +PV +D + +CLP S
Sbjct: 59 HDL-SEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFS 117
Query: 309 ----YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYG-PVAPGGIVDHFLC 363
+ + V GWG L + G L +N+P DC + I ++ C
Sbjct: 118 ERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFC 177
Query: 364 AGRAT--KDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITK 420
AG + KDSC GDSGGP + G W GIVSWG GC + GVYTRV+ ++ W+ K
Sbjct: 178 AGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQK 237
Query: 421 NLKKN 425
++
Sbjct: 238 LMRSE 242
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 305 bits (783), Expect = e-103
Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 189 IVGGQNAEQNEWPWVVAI----FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
IVGG +A E+P+ ++ FCG S+ + + +TA HCV + + L +
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPR 304
G+ ++ NE V +++ H+ FD L ND+++L L + ++D + I LP
Sbjct: 61 VAGELDM-SVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPE 119
Query: 305 GRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
+ V GWG+ E G P VLQKV +P+ ++ DC+A YG I+D +CA
Sbjct: 120 QGHTA-TGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGA---DEILDSMICA 175
Query: 365 GRAT--KDSCTGDSGGPLMVND-GKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
G KDSC GDSGGPL +D G GIVSWG GC + YPGVYT V+Y + WI N
Sbjct: 176 GVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 310 bits (796), Expect = e-103
Identities = 93/288 (32%), Positives = 140/288 (48%), Gaps = 23/288 (7%)
Query: 158 PTEVPVTTTEAGKVDMSCGQKNGYQDLDQERIVGGQN-AEQNEWPWVVAIFNSGKQ---- 212
PT P CG +N + +I G N AE E+PW+VA+ +
Sbjct: 101 PTPSPTPPVVPVLKPSFCGIRN--ERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSG 158
Query: 213 ----FCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNE-VKHVERKVKRL 267
CGGSLI VLT AHCV S ++ + + G+ + + E + + ERK++++
Sbjct: 159 EEQLVCGGSLIAPSVVLTGAHCVNSYQS-NLDAIKIRAGEWDTLTEKERLPYQERKIRQV 217
Query: 268 VRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRASYEGKIATVIGWGSLRE--S 325
+ H F+ +T+ NDVA+L LD+P+ +D I ICLP+ ++ GWG
Sbjct: 218 IIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSR 277
Query: 326 GPQPAVLQKVNIPVWTNADCKARYGPVAPGG---IVDHFLCAG-RATKDSCTGDSGGPLM 381
+L+K+ +P C+A G + F+CAG KD+CTGD G PL
Sbjct: 278 HRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLF 337
Query: 382 V----NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
N ++ Q+GIV+WGIGCG PGVY V +F WI + ++
Sbjct: 338 CPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAK 385
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 301 bits (772), Expect = e-101
Identities = 89/242 (36%), Positives = 125/242 (51%), Gaps = 13/242 (5%)
Query: 189 IVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSW---DVAKLSV 244
+VGG +A++ EWPW V++ CG SLI +++AAHC + D + +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPR 304
LG H+ Q++ ER++KR++ H F+ T D+A+L L+KP +YS +R I LP
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPD 120
Query: 305 GRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLC 363
+ GK V GWG + G +LQK I V C+ P I +C
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLL----PQQITPRMMC 176
Query: 364 AGRAT--KDSCTGDSGGPLMV--NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWIT 419
G + DSC GDSGGPL DG+ Q G+VSWG GC + PGVYTR+ F WI
Sbjct: 177 VGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIK 236
Query: 420 KN 421
+N
Sbjct: 237 EN 238
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 299 bits (767), Expect = e-101
Identities = 86/237 (36%), Positives = 131/237 (55%), Gaps = 16/237 (6%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG++A ++P+ V++ SG CG S++D +VLTAAHCV +S ++ +L V++G
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLS--NLNRLKVHVGT 58
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
+ + + +V V+ V +K +D L NDVA++ L P+K++D ++ I L
Sbjct: 59 NYLSESGDV----YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDED 114
Query: 309 YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT 368
E T+ GWGS R G P LQ++ + V C+ ++D +C
Sbjct: 115 LESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQ-----WRVIDSHICTLTKR 169
Query: 369 -KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKK 424
+ +C GDSGGPL+ N Q+GIVS+G C G P VYTRV+ F+ WI NLKK
Sbjct: 170 GEGACHGDSGGPLVAN---GAQIGIVSFGSPCALG-EPDVYTRVSSFVSWINANLKK 222
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 297 bits (763), Expect = e-100
Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 18/243 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
+VGG++A+ ++PW V + FCGGS+++ + ++TAAHCV +V G+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKI-----TVVAGE 55
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFD--MRTLYNDVAILTLDKPVKYSDTIRAICLPRGR 306
HNI ++ E +R V R++ H F+ + T +D+A+L LD+P+ + + IC+
Sbjct: 56 HNI-EETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKE 114
Query: 307 AS---YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLC 363
+ + V GWG + G VLQ + +P+ A C I ++ C
Sbjct: 115 YTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST----KFTITNNMFC 170
Query: 364 AGRAT--KDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITK 420
AG +DSC GDSGGP + +G GI+SWG C G+YT+V+ ++ WI +
Sbjct: 171 AGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Query: 421 NLK 423
K
Sbjct: 231 KTK 233
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 298 bits (764), Expect = e-99
Identities = 91/285 (31%), Positives = 133/285 (46%), Gaps = 29/285 (10%)
Query: 165 TTEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQ--FCGGSLIDTQ 222
E ++ ++ +D RIV G +AE PW V +F Q CG SLI +
Sbjct: 8 LFEKKSLEDKTERELLESYIDG-RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 66
Query: 223 HVLTAAHCVAHM---SSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMR-TL 278
VLTAAHC+ + ++ L V +G H+ + ++++ H ++ R L
Sbjct: 67 WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 126
Query: 279 YNDVAILTLDKPVKYSDTIRAICLPRGRAS----YEGKIATVIGWGSLRE------SGPQ 328
D+A++ L KPV +SD I +CLP + G V GWG+L+E Q
Sbjct: 127 DRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ 186
Query: 329 PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT-----KDSCTGDSGGPLMVN 383
P+VLQ VN+P+ CK I D+ CAG D+C GDSGGP ++
Sbjct: 187 PSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 242
Query: 384 ---DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
+ +W Q+GIVSWG GC + G YT V WI K + +
Sbjct: 243 SPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF 287
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 295 bits (758), Expect = 3e-99
Identities = 88/261 (33%), Positives = 125/261 (47%), Gaps = 28/261 (10%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQ--FCGGSLIDTQHVLTAAHCVAHM---SSWDVAKLS 243
IV G +AE PW V +F Q CG SLI + VLTAAHC+ + ++ L
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 244 VNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMR-TLYNDVAILTLDKPVKYSDTIRAICL 302
V +G H+ + ++++ H ++ R L D+A++ L KPV +SD I +CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 303 PRGRAS----YEGKIATVIGWGSLRE------SGPQPAVLQKVNIPVWTNADCKARYGPV 352
P + G V GWG+L+E QP+VLQ VN+P+ CK
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST--- 177
Query: 353 APGGIVDHFLCAGRAT-----KDSCTGDSGGPLMVN---DGKWTQVGIVSWGIGCGKGEY 404
I D+ CAG D+C GDSGGP ++ + +W Q+GIVSWG GC +
Sbjct: 178 -RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGK 236
Query: 405 PGVYTRVTYFMPWITKNLKKN 425
G YT V WI K + +
Sbjct: 237 YGFYTHVFRLKKWIQKVIDQF 257
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 291 bits (746), Expect = 8e-98
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 18/239 (7%)
Query: 191 GGQNAEQNEWPWVVAI---FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
GG+ + + PW VA+ CGG+++ VLTAAHCV + +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETI---VIQYE 58
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSD-TIRAICLP-RG 305
N+ + V + T+ ND+AIL L +P+K + LP
Sbjct: 59 STNLWEDPGK---SDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIE 115
Query: 306 RASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG 365
G V G+G + P+ L+ + V +C+ +YG P + CA
Sbjct: 116 FRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYG---PIFLSLQVFCAQ 172
Query: 366 RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKK 424
+ +GD+G P + T VG+ ++ +G P V+T+V ++ WI +KK
Sbjct: 173 KVGVSLESGDAGDPTVQQ---DTLVGVAAYFPKRPEG-APEVFTKVGSYVSWIQDIIKK 227
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 296 bits (759), Expect = 2e-97
Identities = 92/412 (22%), Positives = 149/412 (36%), Gaps = 94/412 (22%)
Query: 42 NPCVTNRGLLGQCLRFKQCYPYLKLPDFIWEPVIYDSFDSCSYIAPDGTQGVGVCCTTPL 101
+ C T G GQC+ F C + + D SY+ C
Sbjct: 30 DDCTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKA-------LCGEF- 81
Query: 102 QGGYPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHFPTEV 161
N + + S+
Sbjct: 82 -------------------------NGVRHFCCPSANIQHNSKVMSLFKDENF------- 109
Query: 162 PVTTTEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAI----FNSGKQFCGGS 217
CG +R+ G + + PW+ + F + CGG+
Sbjct: 110 ------------DCGNFL------SQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGA 151
Query: 218 LIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNE-----------VKHVERKVKR 266
+I +++LTAAHCV + + + LG+H I + + V +++
Sbjct: 152 MISERYILTAAHCVHGLQN---DLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEK 208
Query: 267 LVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA----SYEGKIATVIGWGSL 322
+ H+ +D R + +D+A+L L++ V + I+ ICLP + + V GWG+
Sbjct: 209 HLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT 268
Query: 323 RESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG-RATKDSCTGDSGGPLM 381
E+G VL + N+P+ + C Y + LC G +DSC GDSGGPL
Sbjct: 269 -ENGSSSDVLLQANVPLQPRSACSQAYR----RAVPLSQLCVGGGDLQDSCKGDSGGPLQ 323
Query: 382 V-------NDGKWTQVGIVSWG-IGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
K + GIVS G + CG+ PG+YT V ++ WIT + N
Sbjct: 324 APAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASN 375
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 289 bits (742), Expect = 5e-97
Identities = 78/245 (31%), Positives = 107/245 (43%), Gaps = 17/245 (6%)
Query: 189 IVGGQNAEQNEWPWVVAI---FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
++GG NA E+PW ++ S CG SL+ + L+A+HCV + V
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCV---DGVLPNNIRVI 57
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRT--LYNDVAILTLDKPVKYSDTIRAICLP 303
G + V H+ + T ND+AIL L + I+A LP
Sbjct: 58 AGLWQQSDTSG--TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLP 115
Query: 304 R-GRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFL 362
Y G + GWG + P +LQK +IPV T A C A V I D+ +
Sbjct: 116 ANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHI 175
Query: 363 CAGRAT--KDSCTGDSGGPLMVNDGKWTQVGIVSW----GIGCGKGEYPGVYTRVTYFMP 416
C +C GDSGGPL DG VG+ SW G+G +YP VYTRV+ ++
Sbjct: 176 CVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLG 235
Query: 417 WITKN 421
WI N
Sbjct: 236 WIGDN 240
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 288 bits (739), Expect = 9e-97
Identities = 76/239 (31%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
+VGG A Q E+P++V + CGG+L VLTAAHCV+ S + ++ G
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS--GSGNNTSITATGGV 54
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
+++ + V + + ++++ F T D A++ L +P+ +
Sbjct: 55 VDLQSSSAV---KVRSTKVLQAPGFTKETYGKDWALIKLAQPINQP-----TLKIATTTA 106
Query: 309 YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT 368
Y TV GWG+ RE G Q L K N+P ++A C++ + + +CAG T
Sbjct: 107 YNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSF---ILVANEMICAGYDT 163
Query: 369 --KDSCTGDSGGPLMV--NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLK 423
+D+C GDSGGP+ N +W QVGIVSWG GC + GVYT V+ F I +
Sbjct: 164 KQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 287 bits (737), Expect = 4e-96
Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 24/251 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIF-NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
++ G+ + + PW V + + K CG LI VLTAAHC+ V LG
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKL-----LVRLG 55
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
++++ ++ E ++ +K + H + T ND+A+L L +P S TI ICLP
Sbjct: 56 EYDL-RRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGL 114
Query: 308 S-----YEGKIATVIGWGSLRESGPQ-----PAVLQKVNIPVWTNADCKARYGPVAPGGI 357
+ G+ V GWG + VL + IPV + +C +
Sbjct: 115 AERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVM----SNMV 170
Query: 358 VDHFLCAGRAT--KDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYF 414
++ LCAG +D+C GDSGGP++ + G W VG+VSWG GCG GVYT+V+ +
Sbjct: 171 SENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRY 230
Query: 415 MPWITKNLKKN 425
+ WI +++
Sbjct: 231 LDWIHGHIRDK 241
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 286 bits (734), Expect = 5e-96
Identities = 82/237 (34%), Positives = 117/237 (49%), Gaps = 18/237 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG +A ++P++V+I +G +CGGSL++ VLTAAHCV S + + + G
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCV---SGYAQSGFQIRAGS 57
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLP-RGRA 307
+ + + + H ++ ND+AIL L + I L G
Sbjct: 58 LSRTS----GGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSD 111
Query: 308 SYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGR 366
G ATV GWG+ E G P L KV +P+ + A C+A+YG I + CAG
Sbjct: 112 PVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG---TSAITNQMFCAGV 168
Query: 367 AT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
++ KDSC GDSGGP++ D T +G VSWG GC + Y GVY V +I
Sbjct: 169 SSGGKDSCQGDSGGPIV--DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 286 bits (734), Expect = 8e-96
Identities = 82/248 (33%), Positives = 118/248 (47%), Gaps = 19/248 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I GGQ A+ ++PW V I G G+L+ VLTAAH V + D + L + +G
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV-YEQKHDASALDIRMGT 57
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLY-NDVAILTLDKPVKYSDTIRAICLPRGRA 307
+ + + + H+ + + ND+A++ L+ V + I ICLPR A
Sbjct: 58 LKRLSPHY---TQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEA 114
Query: 308 SY---EGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYG--PVAPGGIVDHFL 362
I T GWG + G L V+IP+ + C A Y P G + + L
Sbjct: 115 ESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANML 173
Query: 363 CAGRAT--KDSCTGDSGGPLMVND---GKWTQVGIVSWG-IGCGKGEYPGVYTRVTYFMP 416
CAG + KDSC GDSGG L+ D +W GIVSWG + CG+ GVYT+V ++P
Sbjct: 174 CAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIP 233
Query: 417 WITKNLKK 424
WI +
Sbjct: 234 WIENIISD 241
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 285 bits (732), Expect = 2e-95
Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 16/256 (6%)
Query: 175 CGQKNGYQDLD-QERIVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHCVA 232
CG L RIV G+ A WPW V++ +G FCGGSLI+ V+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60
Query: 233 HMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVK 292
+S V G+ + + K + K+ ++ ++ ++ T+ ND+ +L L
Sbjct: 61 T-TSD-----VVVAGEFDQ-GSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAAS 113
Query: 293 YSDTIRAICLPRGRASYE-GKIATVIGWGSLR-ESGPQPAVLQKVNIPVWTNADCKARYG 350
+S T+ A+CLP + G GWG R + P LQ+ ++P+ +N +CK +G
Sbjct: 114 FSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWG 173
Query: 351 PVAPGGIVDHFLCAGRATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYT 409
I D +CAG + SC GDSGGPL+ +G WT VGIVSWG PGVY
Sbjct: 174 ----TKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYA 229
Query: 410 RVTYFMPWITKNLKKN 425
RVT + W+ + L N
Sbjct: 230 RVTALVNWVQQTLAAN 245
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 290 bits (743), Expect = 1e-94
Identities = 94/338 (27%), Positives = 142/338 (42%), Gaps = 37/338 (10%)
Query: 120 TYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVPVTTTEA---------GK 170
++ D +++E F + EA K
Sbjct: 88 CDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKK 147
Query: 171 VDMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIF--NSGKQFCGGSLIDTQHVLTAA 228
++ + RIV G +AE PW V +F + + CG SLI + VLTAA
Sbjct: 148 SLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAA 207
Query: 229 HCVAHMS---SWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMR-TLYNDVAI 284
HC+ + ++ L V +G H+ + ++++ H ++ R L D+A+
Sbjct: 208 HCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIAL 267
Query: 285 LTLDKPVKYSDTIRAICLPRGRAS----YEGKIATVIGWGSLRE------SGPQPAVLQK 334
+ L KPV +SD I +CLP + G V GWG+L+E QP+VLQ
Sbjct: 268 MKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQV 327
Query: 335 VNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT-----KDSCTGDSGGPLMVN---DGK 386
VN+P+ CK I D+ CAG D+C GDSGGP ++ + +
Sbjct: 328 VNLPIVERPVCKDST----RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNR 383
Query: 387 WTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKK 424
W Q+GIVSWG GC + G YT V WI K + +
Sbjct: 384 WYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 421
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 283 bits (727), Expect = 1e-94
Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 17/258 (6%)
Query: 175 CGQKNGYQDLDQERIVGGQNAEQNEWPWVVAI----FNSGKQFCGGSLIDTQHVLTAAHC 230
CG +Q R+VGG++A + WPW +++ N+ + CGG+LI HVLTAAHC
Sbjct: 1 CGAPI-FQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHC 59
Query: 231 VAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKP 290
+++ ++ V LG +N++ ++E + V + H+ ++ + ND+A++ L +
Sbjct: 60 ISNTLTY-----RVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAET 114
Query: 291 VKYSDTIRAICLPRGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARY 349
V+ DTI+ CLP + V GWG L +GP A LQ+ PV A C R
Sbjct: 115 VELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRD 174
Query: 350 GPVAPGGIVDHFLCAG-RATKDSCTGDSGGPLMV-NDGKWTQVGIVSWGIG--CGKGEYP 405
+ + +CAG +C GDSGGPL DG+W GIVS+G G C + P
Sbjct: 175 WW--GTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKP 232
Query: 406 GVYTRVTYFMPWITKNLK 423
V+TRV+ ++ WI + L+
Sbjct: 233 TVFTRVSAYIDWINQKLQ 250
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 281 bits (721), Expect = 9e-94
Identities = 88/244 (36%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 189 IVGGQNAEQNEWPWVVAI---FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
IVGG + EWPW V++ + + CGGSLI Q VLTAAHC +
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFD--GLPLQDVWRIY 58
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLP-R 304
G + + ++K ++ H+ + + +D+A++ L P++Y++ + I LP +
Sbjct: 59 SGILELSDITK-DTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSK 117
Query: 305 GRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
G S V GWG +E G +LQKVNIP+ TN +C+ RY I +CA
Sbjct: 118 GDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQD---YKITQRMVCA 174
Query: 365 G--RATKDSCTGDSGGPLMV-NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
G KD+C GDSGGPL+ ++G W VGI SWG GC + E PGVYT+V +M WI +
Sbjct: 175 GYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234
Query: 422 LKKN 425
+ +
Sbjct: 235 TQSS 238
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 281 bits (720), Expect = 1e-93
Identities = 76/250 (30%), Positives = 117/250 (46%), Gaps = 21/250 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFN-SGKQFCGGSLIDTQHVLTAAHCV-----------AHMSS 236
I G+ A++ PW+ + + +G+ FCGGSL+ + ++TAAHC+
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 237 WDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDT 296
+ + LG H + +E VK H +D T NDVA++ L + +
Sbjct: 61 LSPSDFKIILGKHWRLRSDE-NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAF 119
Query: 297 IRAICLPRGRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGG 356
+ ICLP G EG + V GWG P L ++ IP+ ++ C+ Y
Sbjct: 120 VMPICLPEGPQQ-EGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTCQKAY-APLKKK 176
Query: 357 IVDHFLCAGRAT--KDSCTGDSGGPLMVN---DGKWTQVGIVSWGIGCGKGEYPGVYTRV 411
+ +CAG KD+C GDSGGP++ G+W VG VSWG CGK + GVY+ +
Sbjct: 177 VTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYI 236
Query: 412 TYFMPWITKN 421
+ WI +
Sbjct: 237 HHNKDWIQRV 246
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 279 bits (716), Expect = 3e-93
Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 14/238 (5%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG E+ EWPW ++ G CG +LI+ +++AAHC + + A+ + + G
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFT--TYKNPARWTASFGV 58
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
K ++R ++R++ H+ + + D+++ L PV Y++ + +CLP
Sbjct: 59 TIKPSK-----MKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYE 113
Query: 309 YE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
++ G + V G+G+L+ G L++ + + C I LCAG
Sbjct: 114 FQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAY--NDAITPRMLCAGSL 171
Query: 368 T--KDSCTGDSGGPLMVND--GKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
D+C GDSGGPL+ +D W GIVSWG C K PGVYTRVT WIT
Sbjct: 172 EGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSK 229
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 284 bits (728), Expect = 4e-93
Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 24/266 (9%)
Query: 174 SCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAH 233
CG++ D RIVGG++ WPW V++ G CGGSL+ VLTAAHC
Sbjct: 107 DCGRRKLPVD----RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPE 162
Query: 234 MSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAF------DMRTLYNDVAILTL 287
+ +++ V G + ++ V+ +V H + + ND+A++ L
Sbjct: 163 -RNRVLSRWRVFAGAVAQASPHG---LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHL 218
Query: 288 DKPVKYSDTIRAICLP-RGRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCK 346
P+ ++ I+ +CLP G+A +GKI TV GWG+ + G Q VLQ+ +P+ +N C
Sbjct: 219 SSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCN 278
Query: 347 ARYGPVAPGGIVDHFLCAGRAT--KDSCTGDSGGPLM-----VNDGKWTQVGIVSWGIGC 399
I CAG D+C GDSGGP + +W GIVSWG GC
Sbjct: 279 GADFY--GNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGC 336
Query: 400 GKGEYPGVYTRVTYFMPWITKNLKKN 425
+ PGVYT+V+ F WI + +K +
Sbjct: 337 ALAQKPGVYTKVSDFREWIFQAIKTH 362
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 278 bits (713), Expect = 1e-92
Identities = 97/248 (39%), Positives = 138/248 (55%), Gaps = 17/248 (6%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQ---FCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
IVGGQ A +++WPW V++ + FCGGSLI Q VLTAAHCV D+A L V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGP-DVKDLATLRVQ 59
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRG 305
L + ++ ++++ V R++ H F + D+A+L L++PV S + + LP
Sbjct: 60 LREQHLYYQDQL----LPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPA 115
Query: 306 RASYE-GKIATVIGWGSLRESG--PQPAVLQKVNIPVWTNADCKARYGPVAPGG-----I 357
++ G V GWG + P P L++V +P+ N C A+Y A G I
Sbjct: 116 SETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRII 175
Query: 358 VDHFLCAGRATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMP 416
D LCAG + +DSC GDSGGPL+ +G W Q G+VSWG GC + PG+YTRVTY++
Sbjct: 176 RDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLD 235
Query: 417 WITKNLKK 424
WI + K
Sbjct: 236 WIHHYVPK 243
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 277 bits (711), Expect = 2e-92
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 18/243 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+GG+ ++ + PW V + K FCGGS++ V+TAA CV + +S++ G
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCV---DGTKPSDISIHYGS 57
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSD-TIRAICLP-RGR 306
K ++ + + T+ N+ A++ + P+K D T + I LP
Sbjct: 58 SYRTTKGTSVMAKK-----IYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLY 112
Query: 307 ASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGG-IVDHFLCA 364
V GWGS + L + N V C+ +Y + I D CA
Sbjct: 113 DPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCA 172
Query: 365 GRAT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNL 422
G GD+G P + N T VG+ S+ +P V+ RV Y++ I +
Sbjct: 173 GGEYDETYIGYGDAGDPAVQN---GTLVGVASYISSMPSE-FPSVFLRVGYYVLDIKDII 228
Query: 423 KKN 425
Sbjct: 229 SGK 231
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 277 bits (710), Expect = 4e-92
Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 20/248 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCV--AHMSSWDVAKLSVNL 246
I+GGQ A+ +PW V G GG+L+ + +LTAAH + + A L V L
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 247 GDHNIKQKNEVKHVERKVKRLVRHKAF---DMRTLYNDVAILTLDKPVKYSDTIRAICLP 303
G N+++ K ++R+ H + + D+A+L L+ V + ICLP
Sbjct: 59 GHTNVEELM--KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLP 116
Query: 304 RGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARY-GPVAPGGIVDHF 361
Y+ G + V G+G + E L+ V +PV C+ G +
Sbjct: 117 DNDTFYDLGLMGYVSGFGVMEEKIAH--DLRFVRLPVANPQACENWLRGKNRMDVFSQNM 174
Query: 362 LCAGRAT--KDSCTGDSGGPLMV---NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMP 416
CAG + +D+C GDSGG V N +W GIVSWGIGC +G G YT+V ++
Sbjct: 175 FCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVD 232
Query: 417 WITKNLKK 424
WI K +++
Sbjct: 233 WIKKEMEE 240
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 282 bits (722), Expect = 8e-92
Identities = 85/270 (31%), Positives = 123/270 (45%), Gaps = 22/270 (8%)
Query: 166 TEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVL 225
+ CG +I GGQ A+ ++PW V I G G+L+ VL
Sbjct: 142 KSLPVCEPVCGLS---ARTTGGQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVL 196
Query: 226 TAAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLY-NDVAI 284
TAAH V + D + L + +G + + + + H+ + + ND+A+
Sbjct: 197 TAAHAV-YEQKHDASALDIRMGTLKRLSPHYT---QAWSEAVFIHEGYTHDAGFDNDIAL 252
Query: 285 LTLDKPVKYSDTIRAICLPRGRASY---EGKIATVIGWGSLRESGPQPAVLQKVNIPVWT 341
+ L+ V + I ICLPR A I T GWG L + G L V+IP+
Sbjct: 253 IKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVD 311
Query: 342 NADCKARYG--PVAPGGIVDHFLCAGRAT--KDSCTGDSGGPLMVND---GKWTQVGIVS 394
+ C A Y P G + + LCAG + KDSC GDSGG L+ D +W GIVS
Sbjct: 312 HQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVS 371
Query: 395 WG-IGCGKGEYPGVYTRVTYFMPWITKNLK 423
WG + CG+ GVYT+V ++PWI +
Sbjct: 372 WGSMNCGEAGQYGVYTKVINYIPWIENIIS 401
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 274 bits (704), Expect = 2e-91
Identities = 86/236 (36%), Positives = 118/236 (50%), Gaps = 18/236 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG A N WP A+F FCGGSLI + +LTAAHC+ DV LG
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDVV-----LGA 55
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
HNI +++E V + H+ ++ + ND+A++ L PV + I + LP
Sbjct: 56 HNI-REDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPS-TDV 113
Query: 309 YEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
G + T GWG +S VL++V++P+ +NADC A Y G + D +C
Sbjct: 114 GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY-----GIVTDGNICIDST 168
Query: 368 T-KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCG-KGEYPGVYTRVTYFMPWITKN 421
K +C GDSGGPL N GI S+G G + YP +TRVTYF+ WI
Sbjct: 169 GGKGTCNGDSGGPLNYN---GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 273 bits (700), Expect = 1e-90
Identities = 86/242 (35%), Positives = 116/242 (47%), Gaps = 13/242 (5%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQ---FCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
IVGG + + EWPW V + + CGGS+I Q +LTAAHC + L V
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVE--SPKILRVY 58
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRG 305
G N + E V+ ++ H + M D+A+L L+ V Y+D+ R I LP
Sbjct: 59 SGILNQSEIKE-DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSK 117
Query: 306 RASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
V GWG + LQK IP+ TN +C+ RY I +CA
Sbjct: 118 GERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRG---HKITHKMICA 174
Query: 365 G--RATKDSCTGDSGGPLMV-NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
G KD+C GDSGGPL ++ W VGI SWG GC + E PGVYT V ++ WI +
Sbjct: 175 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234
Query: 422 LK 423
+
Sbjct: 235 TQ 236
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 276 bits (707), Expect = 2e-90
Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 21/262 (8%)
Query: 175 CGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCV--A 232
CG+ + ++RI+GGQ A+ +PW V G GG+L+ + +LTAAH +
Sbjct: 77 CGKPVNPVE-QRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPK 133
Query: 233 HMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRH---KAFDMRTLYNDVAILTLDK 289
+ A L V LG N + +K ++R+ H + + D+A+L L+
Sbjct: 134 EHEAQSNASLDVFLGHTN--VEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 191
Query: 290 PVKYSDTIRAICLPRGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKAR 348
V + ICLP Y+ G + V G+G + E L+ V +PV C+
Sbjct: 192 SVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAH--DLRFVRLPVANPQACENW 249
Query: 349 Y-GPVAPGGIVDHFLCAGRAT--KDSCTGDSGGPLMV---NDGKWTQVGIVSWGIGCGKG 402
G + CAG + +D+C GDSGG V N +W GIVSWGIGC +G
Sbjct: 250 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG 309
Query: 403 EYPGVYTRVTYFMPWITKNLKK 424
G YT+V ++ WI K +++
Sbjct: 310 --YGFYTKVLNYVDWIKKEMEE 329
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 272 bits (697), Expect = 4e-90
Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 26/256 (10%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQ------FCGGSLIDTQHVLTAAHCVAHMSSWDVAKL 242
I GG A+ PW AIF ++ CGG LI + +L+AAHC + L
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQ--ERFPPHHL 58
Query: 243 SVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKP----VKYSDTIR 298
+V LG E + + +V++ + HK FD T ND+A+L L + S +R
Sbjct: 59 TVILGRTYRVVPGE-EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVR 117
Query: 299 AICLPRGRASY-EGKIATVIGWGSLRESGPQPA-VLQKVNIPVWTNADCKARYGPVAPGG 356
+CLP + + G+G P + L++ ++ ++ ++ C +++ +
Sbjct: 118 TVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQH--LLNRT 175
Query: 357 IVDHFLCAG--------RATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGV 407
+ D+ LCAG D+C GDSGGPL+ DG+ T VGI+SWG+GCG+ + PGV
Sbjct: 176 VTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGV 235
Query: 408 YTRVTYFMPWITKNLK 423
YT+VT ++ WI N++
Sbjct: 236 YTKVTNYLDWIRDNMR 251
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 269 bits (690), Expect = 3e-89
Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 18/241 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFN-SGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
IVGG N + E PW + N + FCGG+++ ++LTAAHC+ + V +G
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRF-----KVRVG 55
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
D N +Q+ +V+ +++H F T D+A+L L P+ + + LP
Sbjct: 56 DRNTEQEEG-GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP 114
Query: 308 SYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGR 366
+ G + GWG+ SG P LQ ++ PV + A C+A Y PG I + C G
Sbjct: 115 A-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASY----PGKITSNMFCVGF 169
Query: 367 AT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKK 424
KDSC GDSGGP++ N G+VSWG GC + PGVYT+V ++ WI +
Sbjct: 170 LEGGKDSCQGDSGGPVVCN---GQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAA 226
Query: 425 N 425
N
Sbjct: 227 N 227
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 270 bits (692), Expect = 3e-89
Identities = 88/247 (35%), Positives = 123/247 (49%), Gaps = 13/247 (5%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I GG +A +WPW V+I G CGGSL+ Q VL+AAHC S V LG
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFP--SEHHKEAYEVKLGA 58
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
H + +E +K ++ H ++ D+A+L L +P+ +S IR I LP +AS
Sbjct: 59 HQLDSYSE-DAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQAS 117
Query: 309 YE-GKIATVIGWGSLRESG--PQPAVLQKVNIPVWTNADCKARYG----PVAPGGIVDHF 361
+ G TV GWG + S P LQ++ +P+ + C + Y P P + +
Sbjct: 118 FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDM 177
Query: 362 LCAGRAT--KDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWI 418
+CAG KD+C GDSGGPL +G W GIVSWG CG PGVYT + + WI
Sbjct: 178 VCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 419 TKNLKKN 425
+ +
Sbjct: 238 QSKVTEL 244
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 268 bits (688), Expect = 6e-89
Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 10/242 (4%)
Query: 188 RIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
I+GG+ + P++ +I G CGG LID Q VLTAAHC + +V LG
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFT--KGQSPTVVLG 59
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
H++ + K ++K+ + ND+ ++ L K + ++ + + +
Sbjct: 60 AHSLSKNEASKQT-LEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTS 118
Query: 308 SYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG- 365
G V GWG+ + L++V + V + C ++ I +CAG
Sbjct: 119 LRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGD 178
Query: 366 -RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVT-YFMPWITKNLK 423
+ KDSC GD+GGPL+ IVS G CG PG+YT +T + WI NL
Sbjct: 179 AKGQKDSCKGDAGGPLICK---GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLV 235
Query: 424 KN 425
Sbjct: 236 PP 237
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 270 bits (692), Expect = 7e-89
Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 16/278 (5%)
Query: 158 PTEVPVTTTEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGS 217
P + A +CG+++ + + RI+GG ++ PW+ AI G FC GS
Sbjct: 5 PDLLATLPEPASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGS 63
Query: 218 LIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFD-MR 276
L+ T V++AAHC +H +SV LG H + +V +++ + + +
Sbjct: 64 LVHTCWVVSAAHCFSHSP--PRDSVSVVLGQHFFNRTTDVT-QTFGIEKYIPYTLYSVFN 120
Query: 277 TLYNDVAILTLDKP----VKYSDTIRAICLPRGRASY-EGKIATVIGWGSLRESGPQ-PA 330
+D+ ++ L K S ++ ICLP +++ G + GWG L E+ +
Sbjct: 121 PSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSS 180
Query: 331 VLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG--RATKDSCTGDSGGPLMV-NDGKW 387
L++ +P+ + C + V I + LCAG D+C GDSGGPL +G
Sbjct: 181 SLREALVPLVADHKCSSPE--VYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVA 238
Query: 388 TQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
GI+SWG GCG+ PGVYTRV ++ WI ++
Sbjct: 239 YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRPP 276
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 271 bits (695), Expect = 1e-88
Identities = 77/271 (28%), Positives = 117/271 (43%), Gaps = 33/271 (12%)
Query: 175 CGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHM 234
CG + Q RI+GG +A+ +PW V + GG+LI+ VLTAAH V
Sbjct: 70 CGVPREPFEEKQ-RIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHVVEGN 125
Query: 235 SSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDM-------RTLYNDVAILTL 287
+ ++ +G +++ K + + H + + ND+A++ L
Sbjct: 126 R-----EPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRL 180
Query: 288 DKPVKYSDTIRAICLPRGRASYE---GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNAD 344
PVK T+ ICLP + Y G + + GWG + + L+ +PV
Sbjct: 181 KDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK-RDRAVRLKAARLPVAPLRK 239
Query: 345 CKARYG-----PVAPGGIVDHFLCAG-RATKDSCTGDSGGPLMVND----GKWTQVGIVS 394
CK + +CAG DSC GDSGG V D K+ G+VS
Sbjct: 240 CKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVS 299
Query: 395 WGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
WG CG G+YTRV ++ WI K +++N
Sbjct: 300 WGPQCGT---YGLYTRVKNYVDWIMKTMQEN 327
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 273 bits (700), Expect = 1e-88
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 21/262 (8%)
Query: 175 CGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCV--A 232
CG+ + +++I+GGQ A+ +PW V G GG+L+ + +LTAAH +
Sbjct: 145 CGKPVNPVE-QRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPK 201
Query: 233 HMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAF---DMRTLYNDVAILTLDK 289
+ A L V LG N+++ K ++R+ H + + D+A+L L+
Sbjct: 202 EHEAQSNASLDVFLGHTNVEELM--KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 259
Query: 290 PVKYSDTIRAICLPRGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKAR 348
V + ICLP Y+ G + V G+G + E L+ V +PV C+
Sbjct: 260 SVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAH--DLRFVRLPVANPQACENW 317
Query: 349 Y-GPVAPGGIVDHFLCAGRAT--KDSCTGDSGGPLMV---NDGKWTQVGIVSWGIGCGKG 402
G + CAG + +D+C GDSGG V N +W GIVSWGIGC +G
Sbjct: 318 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG 377
Query: 403 EYPGVYTRVTYFMPWITKNLKK 424
G YT+V ++ WI K +++
Sbjct: 378 --YGFYTKVLNYVDWIKKEMEE 397
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 280 bits (717), Expect = 2e-88
Identities = 99/302 (32%), Positives = 135/302 (44%), Gaps = 19/302 (6%)
Query: 129 PPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVPVTTTEAGKVDMSCGQKNGYQDLDQER 188
P + S S T+ H + T K+D C K + R
Sbjct: 334 PAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKI------KPR 387
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQ---FCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
IVGG + + EWPW V + + CGGS+I Q +LTAAHC L V
Sbjct: 388 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY--GVESPKILRVY 445
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLP-R 304
G N + E V+ ++ H + M D+A+L L+ V Y+D+ R ICLP +
Sbjct: 446 SGILNQSEIKE-DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSK 504
Query: 305 GRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
G + V GWG + LQK IP+ TN +C+ RY I +CA
Sbjct: 505 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRG---HKITHKMICA 561
Query: 365 G--RATKDSCTGDSGGPLMV-NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
G KD+C GDSGGPL ++ W VGI SWG GC + E PGVYT V ++ WI +
Sbjct: 562 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 621
Query: 422 LK 423
+
Sbjct: 622 TQ 623
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 267 bits (684), Expect = 2e-88
Identities = 78/243 (32%), Positives = 114/243 (46%), Gaps = 24/243 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIF---NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
I+GG A+ + P++ + + CGG LI VLTAAHC SS +V
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW--GSSI-----NVT 53
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRG 305
LG HNIK + E VKR + H A++ + ND+ +L L++ K + ++ + LP
Sbjct: 54 LGAHNIK-EQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSN 112
Query: 306 RAS-YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIV-DHFLC 363
+A G+ +V GWG G LQ+V + V + C++ LC
Sbjct: 113 KAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL----RHYYDSTIELC 168
Query: 364 AG--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
G K S GDSGGPL+ N GIVS+G G P T+V+ F+ WI K
Sbjct: 169 VGDPEIKKTSFKGDSGGPLVCN---KVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKT 223
Query: 422 LKK 424
+K+
Sbjct: 224 MKR 226
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 265 bits (681), Expect = 6e-88
Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 19/241 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIF-NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
I+ G + + + PW A+ + +CG L+ Q +LTAAHC + V LG
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCR--KKVF-----RVRLG 53
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
+++ E + + + H + ND+ ++ L++ ++ + +R I +
Sbjct: 54 HYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCP 113
Query: 308 SYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG- 365
S G V GWG+ + P VLQ +NI V + C+ Y P I D CAG
Sbjct: 114 S-AGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAY----PRQIDDTMFCAGD 168
Query: 366 RATKDSCTGDSGGPLMVNDGKWTQVGIVSWG-IGCGKGEYPGVYTRVTYFMPWITKNLKK 424
+A +DSC GDSGGP++ N + G+VSWG C + PGVYT + F WI + ++
Sbjct: 169 KAGRDSCQGDSGGPVVCN---GSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQA 225
Query: 425 N 425
N
Sbjct: 226 N 226
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 265 bits (680), Expect = 7e-88
Identities = 82/238 (34%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+ G++ + PW A+ + FC G L+ Q VL+AAHC +S+ ++ LG
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF--QNSY-----TIGLGL 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
H+++ E + VRH ++ L ND+ ++ LD+ V SDTIR+I + +
Sbjct: 54 HSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPT 113
Query: 309 YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT 368
G V GWG L +G P VLQ VN+ V + C Y CAG
Sbjct: 114 -AGNSCLVSGWGLL-ANGRMPTVLQCVNVSVVSEEVCSKLY----DPLYHPSMFCAGGGQ 167
Query: 369 --KDSCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKGEYPGVYTRVTYFMPWITKNLK 423
KDSC GDSGGPL+ N G+VS+G CG+ PGVYT + F WI K ++
Sbjct: 168 DQKDSCNGDSGGPLICN---GYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 264 bits (678), Expect = 1e-87
Identities = 85/232 (36%), Positives = 118/232 (50%), Gaps = 19/232 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG + P V++ NSG FCGGSL++ V++AAHC S V LG+
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY--KSRV-----EVRLGE 52
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
HNIK + R++RH + + ND+ ++ L KP + ++ + LP A
Sbjct: 53 HNIKVTEGSE-QFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP 111
Query: 309 YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT 368
G + TV GWG+ S LQ +NIP+ + +DC Y PG I + CAG
Sbjct: 112 -AGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSY----PGMITNAMFCAGYLE 166
Query: 369 --KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWI 418
KDSC GDSGGP++ N G+VSWG GC + PGVY +V F W+
Sbjct: 167 GGKDSCQGDSGGPVVCN---GELQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 215
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 263 bits (674), Expect = 6e-87
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 11/236 (4%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+GG+ AE + P++ ++ +G CGG L+ Q VL+AAHC+ K+ V LG
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL---EDAADGKVQVLLGA 57
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
H++ Q K + V R V H T+ +D+ +L L + +R + R
Sbjct: 58 HSLSQPEPSKRL-YDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRD 116
Query: 309 YE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
G + V GWG + +G +P LQ V +PV A C R G I + +CA
Sbjct: 117 VAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRT--HHDGAITERLMCAESN 174
Query: 368 TKDSCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKGEYPGVYTRVTYFMPWITKNL 422
+DSC GD+GGPL+ G+V+ G CG + PG+YTRV + WI L
Sbjct: 175 RRDSCKGDAGGPLVCG---GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 262 bits (672), Expect = 9e-87
Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 22/241 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+ G + PW VA+ + + CGG L++ + VLTAAHC M+ + +V+LG
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCK--MNEY-----TVHLGS 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
+ + K + RH + +T ND+ ++ L+ + S ++ + LP
Sbjct: 54 DTLGDRRA---QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEP 110
Query: 309 YEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
G TV GWG+ P+ L V++ + + DC Y + + LCAG
Sbjct: 111 -PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY----KDLLENSMLCAGIP 165
Query: 368 T--KDSCTGDSGGPLMVNDGKWTQVGIVSWG-IGCGKGEYPGVYTRVTYFMPWITKNLKK 424
K++C GDSGGPL+ T G+VSWG CG+ PGVYT+V F WI +KK
Sbjct: 166 DSKKNACNGDSGGPLVCR---GTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKK 222
Query: 425 N 425
+
Sbjct: 223 H 223
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 262 bits (672), Expect = 1e-86
Identities = 82/242 (33%), Positives = 121/242 (50%), Gaps = 23/242 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIF---NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
I+GG A+ + P++ + + CGG L+ VLTAAHC+ SS +V
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL--GSSI-----NVT 53
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRG 305
LG HNI + E V+R + H ++ TL ND+ +L L + +D + I LPR
Sbjct: 54 LGAHNIM-ERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRS 112
Query: 306 RAS-YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
A G + +V GWG L + P LQ+V++ V + C AR+ I +CA
Sbjct: 113 LAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF----KNYIPFTQICA 168
Query: 365 G--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNL 422
G K+S +GDSGGPL+ N GIVS+G G P VYTR++ F+ WI +
Sbjct: 169 GDPSKRKNSFSGDSGGPLVCN---GVAQGIVSYGRNDGT--TPDVYTRISSFLSWIHSTM 223
Query: 423 KK 424
++
Sbjct: 224 RR 225
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 262 bits (671), Expect = 2e-86
Identities = 80/243 (32%), Positives = 115/243 (47%), Gaps = 28/243 (11%)
Query: 189 IVGGQNAEQNEWPWVVAIF----NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
I+ G A +P+ + + + +CGGSLID + +LTAAHCV S V
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSV-----VV 55
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPR 304
LG + V +R++ H F+ T NDVA++ + V+Y+D I+ I LP
Sbjct: 56 YLGSAVQYEGEAV----VNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPS 110
Query: 305 GR---ASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHF 361
G +E ATV GWG +LQ V N C Y PG IV+
Sbjct: 111 GEELNNKFENIWATVSGWGQSNTDTV---ILQYTYNLVIDNDRCAQEYP---PGIIVEST 164
Query: 362 LCAGRAT-KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCG--KGEYPGVYTRVTYFMPWI 418
+C + K C GDSGGP +++ K +G+VS+ G G G P ++RVT +M WI
Sbjct: 165 ICGDTSDGKSPCFGDSGGPFVLS-DKNLLIGVVSFVSGAGCESG-KPVGFSRVTSYMDWI 222
Query: 419 TKN 421
+N
Sbjct: 223 QQN 225
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 263 bits (675), Expect = 2e-86
Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 24/270 (8%)
Query: 172 DMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIF-----NSGKQFCGGSLIDTQHVLT 226
CGQK + +I+GG+ PW AI+ S CGGSL+ V++
Sbjct: 10 KFQCGQK---TLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVIS 66
Query: 227 AAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTL--YNDVAI 284
A HC V LG + + + ++ +V+ L+ HK + TL +ND+A+
Sbjct: 67 ATHCFIDYP--KKEDYIVYLGRSRLNSNTQGE-MKFEVENLILHKDYSADTLAHHNDIAL 123
Query: 285 LTLDKP----VKYSDTIRAICLPRGRASY-EGKIATVIGWGSLRESGPQ-PAVLQKVNIP 338
L + + S TI+ ICLP G + G+G + P L+ +
Sbjct: 124 LKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK 183
Query: 339 VWTNADCKARYGPVAPGGIVDHFLCAG--RATKDSCTGDSGGPLMVN-DGKWTQVGIVSW 395
+ ++ +C+ + + LCA + DSC GDSGGPL+ + G+ T GIVSW
Sbjct: 184 LISHRECQQPH--YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSW 241
Query: 396 GIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
G GC + PGVYTRV++F+PWI + K+
Sbjct: 242 GRGCALKDKPGVYTRVSHFLPWIRSHTKEE 271
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 261 bits (670), Expect = 2e-86
Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 23/240 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG+ A ++P++ +I N G+ FCGG+LI + V+TAA C S + +V LG
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCF---QSQNPGVSTVVLGA 57
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
++++ + E + + + +D + ND+ +L LD+ + ++ + LP A+
Sbjct: 58 YDLR-RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNAT 116
Query: 309 YE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
E G V GWGS R G + VN+ V C+ + +C G
Sbjct: 117 VEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR------------PNNVCTGVL 164
Query: 368 T--KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
T C GD G PL+ G+ S+ +G G P +TRV F WI L
Sbjct: 165 TRRGGICNGDGGTPLVCE---GLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDGVLNNP 220
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 262 bits (672), Expect = 2e-86
Identities = 82/256 (32%), Positives = 113/256 (44%), Gaps = 17/256 (6%)
Query: 175 CGQKNGYQDLDQERIVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHCVAH 233
CG+ R+VGG A + WPW V++ G FCGG+LI + VLTAAHC+
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-- 61
Query: 234 MSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKY 293
S + V LG H E +V RL D+A+L L P
Sbjct: 62 EKSPRPSSYKVILGAHQEVNLEPHV-QEIEVSRLFLE------PTRKDIALLKLSSPAVI 114
Query: 294 SDTIRAICLPRGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPV 352
+D + CLP + GWG + +L++ +PV N C
Sbjct: 115 TDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPVIENKVCNRYEFL- 172
Query: 353 APGGIVDHFLCAG--RATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYT 409
G + LCAG DSC GD+GGPL+ K+ G+ SWG+GC + PGVY
Sbjct: 173 -NGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYV 231
Query: 410 RVTYFMPWITKNLKKN 425
RV+ F+ WI ++ N
Sbjct: 232 RVSRFVTWIEGVMRNN 247
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 260 bits (667), Expect = 5e-86
Identities = 86/240 (35%), Positives = 126/240 (52%), Gaps = 20/240 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG N P+ V++ NSG FCGGSLI++Q V++AAHC S V LG+
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY--KSGI-----QVRLGE 52
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
NI + + + H +++ TL ND+ ++ L + + +I LP AS
Sbjct: 53 DNINVVEGNE-QFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS 111
Query: 309 YEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
G + GWG+ + SG P VL+ + P+ +++ CK+ Y PG I + CAG
Sbjct: 112 -AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY----PGQITSNMFCAGYL 166
Query: 368 T--KDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
KDSC GDSGGP++ + GIVSWG GC + PGVYT+V ++ WI + + N
Sbjct: 167 EGGKDSCQGDSGGPVVCS---GKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 263 bits (673), Expect = 7e-86
Identities = 79/255 (30%), Positives = 122/255 (47%), Gaps = 22/255 (8%)
Query: 189 IVGGQNAEQNEWPWVVAI------FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKL 242
I+GGQ+A WPW+V++ N CGGSL+++Q +LTAAHC V
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFR--IKKKVTDW 58
Query: 243 SVNLGDHNIKQKNE----VKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIR 298
+ G ++ ER V++++ H+ + + ND+A++ + PV I
Sbjct: 59 RLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIG 118
Query: 299 AICLPRGRAS--YEGKIATVIGWGSLRESGPQPA-VLQKVNIPVWTNADCKARYGPVAPG 355
CLP+ RA + V GWG L+E+ + + +LQ+ + + C + G
Sbjct: 119 PGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWY--NG 176
Query: 356 GIVDHFLCAGRAT--KDSCTGDSGGPLMVND---GKWTQVGIVSWGIGCGKGEYPGVYTR 410
I +CAG D+C GDSGGPLM D + VGI SWG+GC + + PGVYT
Sbjct: 177 RIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTS 236
Query: 411 VTYFMPWITKNLKKN 425
++ WI +
Sbjct: 237 TWSYLNWIASKIGST 251
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 259 bits (663), Expect = 6e-85
Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 16/247 (6%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+GG ++ PW+ AI G FC GSL+ T V++AAHC +H +SV LG
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSP--PRDSVSVVLGQ 57
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFD-MRTLYNDVAILTLDKP----VKYSDTIRAICLP 303
H + +V +++ + + + +D+ ++ L K S ++ ICLP
Sbjct: 58 HFFNRTTDVT-QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLP 116
Query: 304 RGRASY-EGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHF 361
+++ G + GWG L E+ + L++ +P+ + C + V I +
Sbjct: 117 EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPE--VYGADISPNM 174
Query: 362 LCAG--RATKDSCTGDSGGPLMV-NDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWI 418
LCAG D+C GDSGGPL +G GI+SWG GCG+ PGVYTRV ++ WI
Sbjct: 175 LCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWI 234
Query: 419 TKNLKKN 425
++
Sbjct: 235 NDRIRPP 241
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 257 bits (660), Expect = 1e-84
Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 21/252 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIF-----NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLS 243
I+GG+ PW AI+ S CGGSLI V++A HC
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP--KKEDYI 58
Query: 244 VNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTL--YNDVAILTLDKP----VKYSDTI 297
V LG + + + ++ +V+ L+ HK + TL +ND+A+L + + S TI
Sbjct: 59 VYLGRSRLNSNTQGE-MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 298 RAICLPRGRASY-EGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPG 355
+ I LP G + G+G + P L+ + + ++ +C+ +
Sbjct: 118 QTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPH--YYGS 175
Query: 356 GIVDHFLCAG--RATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVT 412
+ LCA + DSC GDSGGPL+ + G+ T GIVSWG GC + PGVYTRV+
Sbjct: 176 EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 413 YFMPWITKNLKK 424
+F+PWI + K+
Sbjct: 236 HFLPWIRSHTKE 247
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 257 bits (659), Expect = 1e-84
Identities = 79/243 (32%), Positives = 112/243 (46%), Gaps = 18/243 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIF--NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNL 246
I+GG NE ++VA++ S FCGG+LI+ + VLTAAHC ++ + L
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCD--RKNF-----RIKL 53
Query: 247 GDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGR 306
G H+ K NE + ++ + + D+ ++ LD PVK S I LP
Sbjct: 54 GMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSP 113
Query: 307 ASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG 365
S G + ++GWG + + P V VNI + C+A Y P LCAG
Sbjct: 114 PS-VGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPY-PEFELPATSRTLCAG 171
Query: 366 RAT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKGEYPGVYTRVTYFMPWITKNL 422
KD+C GDSGGPL+ N GI SWG C + P YT+V + WI +
Sbjct: 172 ILEGGKDTCKGDSGGPLICN---GQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228
Query: 423 KKN 425
N
Sbjct: 229 AGN 231
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 257 bits (658), Expect = 2e-84
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 18/243 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVA-HMSSWDVAKLSVNLG 247
I+GG+ + P++ ++ +G CGG L+ + VLTAAHC+A M+ + LG
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQL-----RLVLG 55
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFD-MRTLYNDVAILTLDKPVKYSDTIRAICLPRGR 306
H + + +K ++H + + L ND+A+L LD VK S TIR + LP R
Sbjct: 56 LHTL-DSPG---LTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKR 111
Query: 307 ASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG 365
G ++ GWG + G VL+++++ V C G + +C
Sbjct: 112 QVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFW--NGSLSPSMVCLA 169
Query: 366 --RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKGEYPGVYTRVTYFMPWITKNL 422
+ C GDSGGPL+ G++S+ C P V T V ++ WI K
Sbjct: 170 ADSKDQAPCKGDSGGPLVCG-KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228
Query: 423 KKN 425
++
Sbjct: 229 GRS 231
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 256 bits (656), Expect = 4e-84
Identities = 70/241 (29%), Positives = 104/241 (43%), Gaps = 16/241 (6%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+GG + P++V + K C G+LI VLTAAHC + V LG
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN-KRS-----QVILGA 54
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
H+I + E VK+ + +D T D+ +L L + K + + + LP+
Sbjct: 55 HSIT-REEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDD 113
Query: 309 -YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG-- 365
G + V GWG S L++V I + C R I + +CAG
Sbjct: 114 VKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSL 173
Query: 366 RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGI--GCGKGEYPGVYTRVT-YFMPWITKNL 422
R +DSC GDSG PL+ G+ S+G+ CG PGVY ++ + WI +
Sbjct: 174 RGGRDSCNGDSGSPLLCE---GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
Query: 423 K 423
K
Sbjct: 231 K 231
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 255 bits (655), Expect = 5e-84
Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 21/241 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
++GG NE ++ ++ + CGG+LI+ + VLTA HC + + LG
Sbjct: 1 VIGGDECNINEHRFLALVY-ANGSLCGGTLINQEWVLTARHCD--RGNM-----RIYLGM 52
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
HN+K N+ ++ + D+ ++ L++PV+ S I + LP S
Sbjct: 53 HNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPS 112
Query: 309 YEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
G + ++GWG++ P V NI + A C+A Y G+ LCAG
Sbjct: 113 -VGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAY-----KGLAATTLCAGIL 166
Query: 368 T--KDSCTGDSGGPLMVNDGKWTQVGIVSWGI-GCGKGEYPGVYTRVTYFMPWITKNLKK 424
KD+C GDSGGPL+ N GI+S G C + PG+YT+V + WI +
Sbjct: 167 EGGKDTCKGDSGGPLICN---GQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISG 223
Query: 425 N 425
N
Sbjct: 224 N 224
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 255 bits (653), Expect = 1e-83
Identities = 73/242 (30%), Positives = 108/242 (44%), Gaps = 20/242 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQ--FCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNL 246
+VGG NE P++VA++ S C G+LI+ + VLTAAHC + + L
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCD--RRNI-----RIKL 53
Query: 247 GDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGR 306
G H+ +NE + + + L D+ ++ L +PV YS I + LP
Sbjct: 54 GMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRS 113
Query: 307 ASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGR 366
G ++GWG + + P V NI + + C+ Y LCAG
Sbjct: 114 RG-VGSRCRIMGWGKI-STTTYPDVPHCTNIFIVKHKWCEPLYP---WVPADSRTLCAGI 168
Query: 367 AT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGI-GCGKGEYPGVYTRVTYFMPWITKNLK 423
+D+C GDSGGPL+ N GIV+ G CG+ P VYT+V + WI +
Sbjct: 169 LKGGRDTCHGDSGGPLICN---GEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225
Query: 424 KN 425
N
Sbjct: 226 GN 227
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 254 bits (651), Expect = 1e-83
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 25/239 (10%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG+ A + WP++V++ G FCG +LI V++AAHCV ++ +V + V LG
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCV---ANVNVRAVRVVLGA 57
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
HN+ + E V+R+ +D L ND+ IL L+ + ++ LP
Sbjct: 58 HNLS-RREPTRQVFAVQRIF-ENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR 115
Query: 309 -YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG-- 365
G +GWG L + +VLQ++N+ V T+ C+ +C
Sbjct: 116 LGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSL-CR------------RSNVCTLVR 162
Query: 366 RATKDSCTGDSGGPLMVNDGKWTQVGIVSWG-IGCGKGEYPGVYTRVTYFMPWITKNLK 423
C GDSG PL+ N GI S+ GC G YP + V F+ WI ++
Sbjct: 163 GRQAGVCFGDSGSPLVCN---GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 254 bits (652), Expect = 2e-83
Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 19/246 (7%)
Query: 192 GQNAEQNEWPWVVAI----FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
G++A W W V++ + CGGSLI V+TA HC++ ++ V LG
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTY-----QVVLG 56
Query: 248 DHNIKQKNEVKH-VERKVKRLVRHKAFDMRTLY--NDVAILTLDKPVKYSDTIRAICLPR 304
+++ + + L H ++ + ND+A++ L + + D ++ LP
Sbjct: 57 EYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPP 116
Query: 305 GRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLC 363
+ GWG L GP P LQ+ +P C + +C
Sbjct: 117 AGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWD--WWGITVKKTMVC 174
Query: 364 AGRATKDSCTGDSGGPLM--VNDGKWTQVGIVSW--GIGCGKGEYPGVYTRVTYFMPWIT 419
AG T+ C GDSGGPL DG W G+ S+ GC + P V+TRV+ F+ WI
Sbjct: 175 AGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWID 234
Query: 420 KNLKKN 425
+ + N
Sbjct: 235 ETIASN 240
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 254 bits (651), Expect = 2e-83
Identities = 82/242 (33%), Positives = 120/242 (49%), Gaps = 20/242 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
++GG NE +VA FNS FC G+LI+ + VLTAAHC +++ + LG
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD--NTNF-----QMKLGV 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
H+ K NE + ++ + + L D+ ++ LD V S+ I + LP S
Sbjct: 54 HSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPS 113
Query: 309 YEGKIATVIGWGSLRESG-PQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHF-LCAGR 366
G + ++GWGS+ P V I + +A C+A Y P + ++ LCAG
Sbjct: 114 -VGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGY----PELLTEYRTLCAGI 168
Query: 367 AT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGI-GCGKGEYPGVYTRVTYFMPWITKNLK 423
KD+C GDSGGPL+ N GIVS+G CG+G PGVYT+V + WI +
Sbjct: 169 LEGGKDTCGGDSGGPLICN---GQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225
Query: 424 KN 425
N
Sbjct: 226 GN 227
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 253 bits (649), Expect = 3e-83
Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIF---NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
I+GG+ + + P++ + +G+ CGG L+ VLTAAHC S+ +V
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWG--SNI-----NVT 53
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRG 305
LG HNI+ + E +R +RH ++ RT+ ND+ +L L + V+ + + + LPR
Sbjct: 54 LGAHNIQ-RRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRA 112
Query: 306 RAS-YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
+ G + TV GWG + L++V + V + C + +C
Sbjct: 113 QEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIF----GSYDPRRQICV 167
Query: 365 G--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNL 422
G R K + GDSGGPL+ N GIVS+G G P V+TRV+ F+PWI +
Sbjct: 168 GDRRERKAAFKGDSGGPLLCN---NVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTM 222
Query: 423 K 423
+
Sbjct: 223 R 223
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 253 bits (649), Expect = 3e-83
Identities = 83/238 (34%), Positives = 118/238 (49%), Gaps = 20/238 (8%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
+V G ++ P+ A++ SG CGG LI VLTAAHC + V LG
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK--KPNL-----QVFLGK 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRAS 308
HN++Q+ + + V R V H +D + D+ +L L +P K S+ I+ + L R ++
Sbjct: 54 HNLRQRESSQ-EQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSA 112
Query: 309 YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT 368
++GWG G P +Q I + + +C+ Y PG I + LCAG
Sbjct: 113 -NTTSCHILGWGKT-ADGDFPDTIQCAYIHLVSREECEHAY----PGQITQNMLCAGDEK 166
Query: 369 --KDSCTGDSGGPLMVNDGKWTQVGIVSWG-IGCGKGEYPGVYTRVTYFMPWITKNLK 423
KDSC GDSGGPL+ G+VSWG I CG E PGVYT V + WI K ++
Sbjct: 167 YGKDSCQGDSGGPLVCG---DHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 254 bits (650), Expect = 4e-83
Identities = 80/253 (31%), Positives = 107/253 (42%), Gaps = 31/253 (12%)
Query: 188 RIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
V Q +N PW VA++ K CGG L+D VLTAAHC + V LG
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCY--NDKY-----QVWLG 55
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLY-----------NDVAILTLDKPVKYSDT 296
+N + R V + + H F+M L ND+ +L L KP +D
Sbjct: 56 KNNFLEDEPSD-QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDV 114
Query: 297 IRAICLPRGRASYEGKIATVIGWGSLRES-GPQPAVLQKVNIPVWTNADCKARYGPVAPG 355
++ I LP G GWGS P LQ VN+ + N DC +
Sbjct: 115 VKPITLPTEEPK-LGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAH----EM 169
Query: 356 GIVDHFLCAGRAT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGI-GCGKGEYPGVYTRVT 412
+ D LCAG +C DSGGPL+ + GI SWG CG+ P VYT++
Sbjct: 170 KVTDAMLCAGEMDGGSYTCEHDSGGPLICD---GILQGITSWGPEPCGEPTEPSVYTKLI 226
Query: 413 YFMPWITKNLKKN 425
F WI + + N
Sbjct: 227 KFSSWIRETMANN 239
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 252 bits (647), Expect = 6e-83
Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 22/240 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+ G+ + PW A+F + CGG L+ + VLTAAHC + SV LGD
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCK--KQKY-----SVRLGD 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLY---NDVAILTLDKPVKYSDTIRAICLPRG 305
H+++ +++ + E +V + ++H ++ +D+ ++ L D ++ + L
Sbjct: 54 HSLQSRDQPE-QEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANL 112
Query: 306 RASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
G+ + GWG++ P L + +++ C+ Y PG I + +CA
Sbjct: 113 CPK-VGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAY----PGKITEGMVCA 167
Query: 365 G-RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKGEYPGVYTRVTYFMPWITKNL 422
G D+C GDSGGPL+ + GI SWG CGK E PGVYT++ + WI K +
Sbjct: 168 GSSNGADTCQGDSGGPLVCD---GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 252 bits (647), Expect = 1e-82
Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 18/241 (7%)
Query: 189 IVGGQNAEQNEWPWVVAI-FNSGKQ---FCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
+VGG+ A+ N WPW +++ + SG CGGSLI V+TAAHCV +W V
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTW-----RV 55
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTL--YNDVAILTLDKPVKYSDTIRAICL 302
LG+HN+ NE K V + H ++ + D+A+L L+ + ++ L
Sbjct: 56 VLGEHNL-NTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAAL 114
Query: 303 PRGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHF 361
P + GWG GP L++ +P +A C + +
Sbjct: 115 PPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSG--WWGSTVKTTM 172
Query: 362 LCAGRATKDSCTGDSGGPLMVN-DGKWTQVGIVSW--GIGCGKGEYPGVYTRVTYFMPWI 418
+CAG C GDSGGPL +G + G+ S+ GC + P V+TRV+ ++ W+
Sbjct: 173 VCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWM 232
Query: 419 T 419
Sbjct: 233 N 233
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 251 bits (644), Expect = 2e-82
Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 25/243 (10%)
Query: 189 IVGGQNAEQNEWPWVVAI----FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
I+GG + P++ K FCGG L+ + VLTAAHC S +V
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK--GRSM-----TV 53
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPR 304
LG HNIK K E + + V + + H ++ ND+ +L L + K + +R + LPR
Sbjct: 54 TLGAHNIKAKEETQQI-IPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 305 GRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIV-DHFL 362
A + G V GWG + G P L +V + V + C++++ + +
Sbjct: 113 RNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF----QSSYNRANEI 168
Query: 363 CAG--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITK 420
C G + S DSGGPL+ GIVS+G G P V+TRV F+ WI K
Sbjct: 169 CVGDSKIKGASFEEDSGGPLVCK---RAAAGIVSYGQTDGS--APQVFTRVLSFVSWIKK 223
Query: 421 NLK 423
+K
Sbjct: 224 TMK 226
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 251 bits (644), Expect = 2e-82
Identities = 82/252 (32%), Positives = 115/252 (45%), Gaps = 31/252 (12%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
+VGG N E+N PW VA++ + CGG L+D VLTAAHC + + V LG
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY--VDQY-----EVWLGK 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLY-----------NDVAILTLDKPVKYSDTI 297
+ + Q+ R V + H F+M L +D+ +L L KP +D +
Sbjct: 54 NKLFQEEPSA-QHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVV 112
Query: 298 RAICLPRGRASYEGKIATVIGWGSLRESG-PQPAVLQKVNIPVWTNADCKARYGPVAPGG 356
+ I LP G GWGS+ + +P LQ V I + N +C Y
Sbjct: 113 KPIALPTKEPK-PGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVY----LQK 167
Query: 357 IVDHFLCAGRAT--KDSCTGDSGGPLMVNDGKWTQVGIVSWG-IGCGKGEYPGVYTRVTY 413
+ D LCAG KD+C DSGGPL+ + G S+G + CGK P +YT +
Sbjct: 168 VTDVMLCAGEMGGGKDTCRDDSGGPLICD---GILQGTTSYGPVPCGKPGVPAIYTNLIK 224
Query: 414 FMPWITKNLKKN 425
F WI + KN
Sbjct: 225 FNSWIKDTMMKN 236
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 250 bits (642), Expect = 6e-82
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 19/248 (7%)
Query: 189 IVGGQNAEQNEWPWVVAI----FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
+VGG A++N WP +++ +S CGG+LI V+TAAHCV ++ V
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTF-----RV 55
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTL--YNDVAILTLDKPVKYSDTIRAICL 302
+G+HN+ +N V+++V H ++ + D+A+L L + V + ++ L
Sbjct: 56 VVGEHNL-NQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL 114
Query: 303 PRGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHF 361
PR + GWG R +G LQ+ +P A C + + +
Sbjct: 115 PRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYW--GSTVKNSM 172
Query: 362 LCAGRA-TKDSCTGDSGGPLM-VNDGKWTQVGIVSWG--IGCGKGEYPGVYTRVTYFMPW 417
+CAG + C GDSGGPL + +G++ G+ S+ +GC P V+TRV+ ++ W
Sbjct: 173 VCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISW 232
Query: 418 ITKNLKKN 425
I + N
Sbjct: 233 INNVIASN 240
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 250 bits (642), Expect = 6e-82
Identities = 86/249 (34%), Positives = 128/249 (51%), Gaps = 20/249 (8%)
Query: 189 IVGGQNAEQNEWPWVVAI-FNSGKQ---FCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
+VGG++A N WPW V++ ++S Q CGG+L+D VLTAAHC++ ++ V
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTY-----RV 55
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTL--YNDVAILTLDKPVKYSDTIRAICL 302
LG H++ + KV +LV H+ ++ L ND+A+L L PV +D I+ CL
Sbjct: 56 VLGRHSLSTNEPGS-LAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL 114
Query: 303 PRGRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHF 361
P + V GWG L+ +G P +LQ+ + V A C + +
Sbjct: 115 PAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPG--WWGSTVKTNM 172
Query: 362 LCAGRA-TKDSCTGDSGGPLM--VNDGKWTQVGIVSWG--IGCGKGEYPGVYTRVTYFMP 416
+CAG SC GDSGGPL +G+W GIVS+G +GC P V+TRV+ ++
Sbjct: 173 ICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYID 232
Query: 417 WITKNLKKN 425
WI + N
Sbjct: 233 WINSVIANN 241
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 248 bits (637), Expect = 2e-81
Identities = 73/244 (29%), Positives = 111/244 (45%), Gaps = 25/244 (10%)
Query: 189 IVGGQNAEQNEWPWVVAI----FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
I+GG + + P++ + N +FCGG LI VLTAAHC S +V
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA--GRSI-----TV 53
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPR 304
LG HNI + E + +V + RH ++ TL++D+ +L L + + + + P
Sbjct: 54 TLGAHNIT-EEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112
Query: 305 GRASY-EGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLC 363
G++ V GWG P LQ+V + + C + LC
Sbjct: 113 QFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR-----DFDHNLQLC 167
Query: 364 AG--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKN 421
G R TK + GDSGGPL+ GIVS+G K P V+TR++++ PWI +
Sbjct: 168 VGNPRKTKSAFKGDSGGPLLCA---GVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQI 222
Query: 422 LKKN 425
L+ N
Sbjct: 223 LQAN 226
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 250 bits (641), Expect = 3e-81
Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 25/263 (9%)
Query: 169 GKVDMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNS-GKQFCGGSLIDTQHVLTA 227
G+ C + + + + PW V + NS GK FCGG +I VLT
Sbjct: 35 GEDHKQCVPHDQCAC--GVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTT 92
Query: 228 AHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTL 287
A C + V + K+ + H +D ND+++L L
Sbjct: 93 AKCSLLHRNITVKTYFNRTSQD---------PLMIKITHVHVHMRYDADAGENDLSLLEL 143
Query: 288 DKPVKYSDTIRAICLPRGRASYE----GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNA 343
+ P++ +C P + + GW R L + +
Sbjct: 144 EWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWA--RNGTDLGNSLTTRPVTLVEGE 201
Query: 344 DCKARYGPVAPGGIVDHFLCAGRATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKG 402
+C + C ++ + G + G W G++ G
Sbjct: 202 ECGQVLN----VTVTTRTYCER-SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQ 255
Query: 403 EYPGVYTRVTYFMPWITKNLKKN 425
+ + T+V+ + W + + +
Sbjct: 256 AHMVLVTKVSRYSLWFKQIMNAH 278
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 249 bits (637), Expect = 3e-81
Identities = 80/252 (31%), Positives = 117/252 (46%), Gaps = 31/252 (12%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG E++ PW V + + G+ CGG L+ Q VLTAAHC+ + + LG
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI--RNKS-----VILLGR 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYN-----------DVAILTLDKPVKYSDTI 297
H++ + +V H +DM L N D+ +L L +P + +D +
Sbjct: 54 HSLFHPEDTG-QVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAV 112
Query: 298 RAICLPRGRASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGG 356
+ + LP + G GWGS+ P LQ V++ V +N C + P
Sbjct: 113 KVMDLPTQEPA-LGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVH----PQK 167
Query: 357 IVDHFLCAGRAT--KDSCTGDSGGPLMVNDGKWTQVGIVSWGI-GCGKGEYPGVYTRVTY 413
+ LCAGR T K +C+GDSGGPL+ N GI SWG C E P +YT+V +
Sbjct: 168 VTKFMLCAGRWTGGKSTCSGDSGGPLVCN---GVLQGITSWGSEPCALPERPSLYTKVVH 224
Query: 414 FMPWITKNLKKN 425
+ WI + N
Sbjct: 225 YRKWIKDTIVAN 236
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 249 bits (637), Expect = 3e-81
Identities = 77/253 (30%), Positives = 111/253 (43%), Gaps = 32/253 (12%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG EQ+ PW A+++ CGG L+ Q VLTAAHC+ ++ + LG
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI--SDNY-----QLWLGR 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLY-----------NDVAILTLDKPV-KYSDT 296
HN+ V H F+M L +D+ +L L +P +D
Sbjct: 54 HNLFDDENTA-QFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDA 112
Query: 297 IRAICLPRGRASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPG 355
++ + LP G GWGS+ P LQ V++ + N +CK +
Sbjct: 113 VKVVELPTEEPE-VGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAH----VQ 167
Query: 356 GIVDHFLCAG--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWG-IGCGKGEYPGVYTRVT 412
+ D LC G KD+C GDSGGPLM + G+ SWG + CG P V RV
Sbjct: 168 KVTDFMLCVGHLEGGKDTCVGDSGGPLMCD---GVLQGVTSWGYVPCGTPNKPSVAVRVL 224
Query: 413 YFMPWITKNLKKN 425
++ WI + +N
Sbjct: 225 SYVKWIEDTIAEN 237
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 246 bits (631), Expect = 2e-80
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 25/239 (10%)
Query: 189 IVGGQNAEQNEWPWVVAIF----NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSV 244
I+GG + + P++ + + CGG LI Q VLTAAHC +V
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK--GREI-----TV 53
Query: 245 NLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPR 304
LG H+++ K E + KV++ + H++++ +D+ +L L+K V+ + + + LP
Sbjct: 54 ILGAHDVR-KRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112
Query: 305 GRASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLC 363
G + GWG P L++V + + C +C
Sbjct: 113 PSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYR-----YYEYKFQVC 167
Query: 364 AG--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITK 420
G + + GDSGGPL+ GIVS+G K P ++TRV+ ++PWI
Sbjct: 168 VGSPTTLRAAFMGDSGGPLLCA---GVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINA 221
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 256 bits (656), Expect = 5e-80
Identities = 77/261 (29%), Positives = 121/261 (46%), Gaps = 19/261 (7%)
Query: 174 SCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAH 233
SCG KN + ++RIVGG+ A+ + PW VAI ++ CGG I +LTAAHC+
Sbjct: 308 SCGVKN-RMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCL-- 364
Query: 234 MSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKY 293
+ + + + + + V V R++ H+ ++ T ND+A++ + K
Sbjct: 365 -RASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNK 423
Query: 294 SDT----IRAICLP-RGRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKAR 348
D C+P V GWG +++ LQ + + +N C
Sbjct: 424 KDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNER-VFSLQWGEVKLISN--CSKF 480
Query: 349 YGPVAPGGIVDHFLCAG--RATKDSCTGDSGGPLMV--NDGKWTQVGIVSWGIGCGKGEY 404
YG CAG + D+C GDSGGPL+ + G+VSWG CGK E+
Sbjct: 481 YG---NRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEF 537
Query: 405 PGVYTRVTYFMPWITKNLKKN 425
PGVYT+V + WI+ ++ +
Sbjct: 538 PGVYTKVANYFDWISYHVGRP 558
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 244 bits (626), Expect = 2e-79
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 31/252 (12%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+GG E++ PW VA+++ G CGG L+ Q VLTAAHC+ + + LG
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM--SDDY-----QIWLGR 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMR-----------TLYNDVAILTLDKPVKYSDTI 297
HN+ + + +V FD+ + +D+ +L L +P + +D +
Sbjct: 54 HNLSKDEDTA-QFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAV 112
Query: 298 RAICLPRGRASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGG 356
+ + LP G GWG + + LQ V + + +N C Y P
Sbjct: 113 KILDLPTQEPK-LGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAY----PEK 167
Query: 357 IVDHFLCAG--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKGEYPGVYTRVTY 413
+ + LCA + C GDSGG L+ + GI SWG C V+T+V
Sbjct: 168 MTEFVLCATHRDDSGSICLGDSGGALICD---GVFQGITSWGYSECADFNDNFVFTKVMP 224
Query: 414 FMPWITKNLKKN 425
WI + ++KN
Sbjct: 225 HKKWIKETIEKN 236
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 243 bits (623), Expect = 3e-79
Identities = 82/252 (32%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
IVGG E+N PW VA+ N CGG LID V+TAAHC ++ V LG
Sbjct: 1 IVGGYKCEKNSQPWQVAVINEY--LCGGVLIDPSWVITAAHCYSN-------NYQVLLGR 51
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLY-----------NDVAILTLDKPVKYSDTI 297
+N+ + R V++ RH + + ND+ +L L +P + +
Sbjct: 52 NNLFKDEPFA-QRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGV 110
Query: 298 RAICLPRGRASYEGKIATVIGWGSLRESGPQ-PAVLQKVNIPVWTNADCKARYGPVAPGG 356
+ I LP G GWGS S LQ VNI + +N C Y
Sbjct: 111 KVIDLPTKEPK-VGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETY----KDN 165
Query: 357 IVDHFLCAG--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKGEYPGVYTRVTY 413
+ D LCAG KD+C GDSGGPL+ + GI S G C K + P +Y ++
Sbjct: 166 VTDVMLCAGEMEGGKDTCAGDSGGPLICD---GVLQGITSGGATPCAKPKTPAIYAKLIK 222
Query: 414 FMPWITKNLKKN 425
F WI K +K+N
Sbjct: 223 FTSWIKKVMKEN 234
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 242 bits (619), Expect = 1e-78
Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 18/242 (7%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
+V G W+V++ K CGGSLI VLTA C S D+ LG
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCF---PSRDLKDYEAWLGI 56
Query: 249 HNIKQKNEVKHVE-RKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
H++ + + K + V +LV +D+ ++ L +P D + I LP +
Sbjct: 57 HDVHGRGDEKCKQVLNVSQLVYG------PEGSDLVLMKLARPAVLDDFVSTIDLPNYGS 110
Query: 308 SYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG- 365
+ +V GWG +L+ ++ + N C + + + +CAG
Sbjct: 111 TIPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHHRG--KVTLNESEICAGA 167
Query: 366 -RATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLK 423
+ C GD GGPL+ +G++ G GC PG++ RV Y+ WI K +
Sbjct: 168 EKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL 227
Query: 424 KN 425
Sbjct: 228 TY 229
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 240 bits (616), Expect = 4e-78
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 21/243 (8%)
Query: 189 IVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
+VGG PW V++ G+ FCGGSL+ Q +LTA C + + V LG
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSS-CHMPLTGYEVWLG 56
Query: 248 DHNIKQKNEVKHV-ERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGR 306
++ + V ++V + + +L L++ V + + ICLP
Sbjct: 57 TLFQNPQHGEPSLQRVPVAKMVCG------PSGSQLVLLKLERSVTLNQRVALICLPPEW 110
Query: 307 ASYE-GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAG 365
G + GWG + +G VL + V +N +C ++ G + + +C
Sbjct: 111 YVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHR----GRVRESEMCTE 165
Query: 366 --RATKDSCTGDSGGPLM-VNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNL 422
A +C GD GGPL W GI+ C + +P V+TRV+ F+ WI K +
Sbjct: 166 GLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225
Query: 423 KKN 425
+
Sbjct: 226 RLG 228
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 237 bits (608), Expect = 5e-77
Identities = 71/242 (29%), Positives = 108/242 (44%), Gaps = 28/242 (11%)
Query: 189 IVGGQNAEQNEWPWVVAIF---NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVN 245
IVGG A+ + P++ ++ N G FCGG+LI VLTAAHC+ ++V
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCL---RDIPQRLVNVV 57
Query: 246 LGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRG 305
LG HN++ E V ++ + +D ND+ ++ L P S ++ + LP+
Sbjct: 58 LGAHNVR-TQEPTQQHFSVAQVFLNN-YDAENKLNDILLIQLSSPANLSASVATVQLPQQ 115
Query: 306 RAS-YEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCA 364
G +GWG + P VLQ++N+ V T H +C
Sbjct: 116 DQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCR-------------PHNICT 162
Query: 365 G--RATKDSCTGDSGGPLMVNDGKWTQVGIVSWGI-GCGKGEYPGVYTRVTYFMPWITKN 421
R C GDSGGPL+ + GI S+ I GC +P +TRV ++ WI
Sbjct: 163 FVPRRKAGICFGDSGGPLICD---GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219
Query: 422 LK 423
L+
Sbjct: 220 LR 221
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 237 bits (606), Expect = 2e-75
Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 23/237 (9%)
Query: 188 RIVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNL 246
+ + + PW V + + GK FCGG +I VLT A C + +V
Sbjct: 93 LTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNI-----TVKT 147
Query: 247 GDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLP-RG 305
+ + K+ + H +D ND+++L L+ P++ +C P +
Sbjct: 148 YFNRT----SQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKD 203
Query: 306 RASYE---GKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFL 362
A + + GW R L + + +C +
Sbjct: 204 FAEHLLIPRTRGLLSGWA--RNGTDLGNSLTTRPVTLVEGEECGQVLN----VTVTTRTY 257
Query: 363 CAGRATKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWI 418
C ++ + G + G W G++ G + + T+V+ + W
Sbjct: 258 CER-SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWF 312
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 241 bits (616), Expect = 1e-74
Identities = 65/310 (20%), Positives = 104/310 (33%), Gaps = 67/310 (21%)
Query: 165 TTEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHV 224
+ D CG + ++Q PW V I ++ C G+LI Q V
Sbjct: 210 LDVSKLTDTICGV----------GNMSANASDQERTPWHVTIKPKSQETCRGALISDQWV 259
Query: 225 LTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLY----- 279
LTAAHC D + VN+GD + E +++ V FD+
Sbjct: 260 LTAAHCFR--DGNDHSLWRVNVGDPKSQWGK-----EFLIEKAVISPGFDVFAKKNQGIL 312
Query: 280 ----NDVAILTLDKPVKYSDTIRAICLPRGRASYE------GKIATVIGWGSLRESG--P 327
+D+A+L L + VK S R ICLP + G L +
Sbjct: 313 EFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPA 372
Query: 328 QPAVLQKVNIPV--------------WTNADCKARYGPVAPGGIVDHFLCAG-RATKDSC 372
L + + + + D FLC+G + + C
Sbjct: 373 HFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPC 432
Query: 373 TGDSGGPLMVN-DGKWTQVGIVSWGI-----GCGKG------------EYPGVYTRVTYF 414
G+SGG + + ++ QVG+VSWG+ G + +
Sbjct: 433 KGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRM 492
Query: 415 MPWITKNLKK 424
PW+ ++L
Sbjct: 493 QPWLRQHLGD 502
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 236 bits (603), Expect = 5e-73
Identities = 58/290 (20%), Positives = 106/290 (36%), Gaps = 63/290 (21%)
Query: 188 RIVGGQNAEQNEWPWVVAIF----NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLS 243
+ + ++ PW I + G + C G+++ VLTAAHC +
Sbjct: 214 VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT--VDDKEHSIK 271
Query: 244 VNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMR---------TLYNDVAILTLDKPVKYS 294
V++G + +++ ++ H +++ DVA++ L +KY
Sbjct: 272 VSVGGE---------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYG 322
Query: 295 DTIRAICLP-RGRASYEGKIATVIGWGSLRE------------SGPQPAVLQKVNIPVWT 341
TIR ICLP + ++ +E + L + + +
Sbjct: 323 QTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKN 382
Query: 342 NADC-----KARYGP------VAPGGIVDHFLCAG----RATKDSCTGDSGGPLMV-NDG 385
A+Y P + FLC G A ++C GDSGGPL+V
Sbjct: 383 GDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRS 442
Query: 386 KWTQVGIVSWGI--GCGK--------GEYPGVYTRVTYFMPWITKNLKKN 425
++ QVG++SWG+ C + + +PW+ + L+
Sbjct: 443 RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 492
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 216 bits (552), Expect = 2e-63
Identities = 83/259 (32%), Positives = 114/259 (44%), Gaps = 17/259 (6%)
Query: 172 DMSCGQKNGYQDLDQERIVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHC 230
CG+ R+VGG A + WPW V++ G FCGG+LI + VLTAAHC
Sbjct: 545 SFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHC 604
Query: 231 VAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKP 290
+ S + V LG H E +V RL D+A+L L P
Sbjct: 605 LE--KSPRPSSYKVILGAHQEVNLEPHV-QEIEVSRLFLE------PTRKDIALLKLSSP 655
Query: 291 VKYSDTIRAICLPRGRASY-EGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARY 349
+D + CLP + + GWG + +L++ +PV N C
Sbjct: 656 AVITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPVIENKVCNRYE 714
Query: 350 GPVAPGGIVDHFLCAG--RATKDSCTGDSGGPLM-VNDGKWTQVGIVSWGIGCGKGEYPG 406
G + LCAG DSC GDSGGPL+ K+ G+ SWG+GC + PG
Sbjct: 715 FL--NGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPG 772
Query: 407 VYTRVTYFMPWITKNLKKN 425
VY RV+ F+ WI ++ N
Sbjct: 773 VYVRVSRFVTWIEGVMRNN 791
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 211 bits (538), Expect = 1e-61
Identities = 55/290 (18%), Positives = 102/290 (35%), Gaps = 63/290 (21%)
Query: 188 RIVGGQNAEQNEWPWVVAIF----NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLS 243
+ + ++ PW I + G + C G+++ VLTAAHC +
Sbjct: 456 VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT--VDDKEHSIK 513
Query: 244 VNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMR---------TLYNDVAILTLDKPVKYS 294
V++G + +++ ++ H +++ DVA++ L +KY
Sbjct: 514 VSVGGEK---------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYG 564
Query: 295 DTIRAICLP-RGRASYEGKIAT-----VIGWGSLRESG-------PQPAVLQKVNIPVWT 341
TIR ICLP + ++ L + L + + +
Sbjct: 565 QTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKN 624
Query: 342 N---ADCKARY--------GPVAPGGIVDHFLCAG----RATKDSCTGDSGGPLMV-NDG 385
C+ + FLC G A ++C GDSGGPL+V
Sbjct: 625 GDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRS 684
Query: 386 KWTQVGIVSWGIGCG----------KGEYPGVYTRVTYFMPWITKNLKKN 425
++ QVG++SWG+ + + +PW+ + L+
Sbjct: 685 RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 734
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 163 bits (414), Expect = 4e-49
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 274 DMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRASYEGKIATVIGWGSLRESGPQ---PA 330
D + +D+ +L L P K +D ++ + LP G GWGS+ P
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPE-LGSTCEASGWGSIEPGPDDFEFPD 60
Query: 331 VLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRAT--KDSCTGDSGGPLMVNDGKWT 388
+Q V + + N C + P + + LCAG KD+C GDSGGPL + +G W
Sbjct: 61 EIQCVQLTLLQNTFCADAH----PDKVTESMLCAGYLPGGKDTCMGDSGGPL-ICNGMW- 114
Query: 389 QVGIVSWGIG-CGKGEYPGVYTRVTYFMPWITKNLKKN 425
GI SWG CG P +YT++ +++ WI + +N
Sbjct: 115 -QGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITEN 151
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 146 bits (372), Expect = 1e-43
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 326 GPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRATKDSCTGDSGGPLMVN-D 384
P LQ+ ++P+ +N +CK +G I D +CAG + SC GDSGGPL+ +
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWG----TKIKDAMICAGASGVSSCMGDSGGPLVCKKN 56
Query: 385 GKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
G WT VGIVSWG PGVY RVT + W+ + L N
Sbjct: 57 GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 97
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 139 bits (353), Expect = 2e-40
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 189 IVGGQNAEQNEWPWVVAI-FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLG 247
IV G+ A WPW V++ +G FCGGSLI+ V+TAAHC +S V G
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCG-VTTSD-----VVVAG 54
Query: 248 DHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRA 307
+ + + K + K+ ++ ++ ++ T+ ND+ +L L +S T+ A+CLP
Sbjct: 55 EFDQ-GSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASD 113
Query: 308 SYE-GKIATVIGWGSLR 323
+ G GWG R
Sbjct: 114 DFAAGTTCVTTGWGLTR 130
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 95.7 bits (239), Expect = 1e-24
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 189 IVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGD 248
I+GG+ E+N PW VAI++ CGG L++ + VLTAAHC V LG
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKND-------NYEVWLGR 53
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDM 275
HN+ +NE V H F++
Sbjct: 54 HNLF-ENENTAQFFGVTADFPHPGFNL 79
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 96.2 bits (239), Expect = 3e-23
Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 35/243 (14%)
Query: 189 IVGGQN-----AEQNEWPW-VVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKL 242
+V G + A P+ +A G C G+LI +LT HCV + +S +
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60
Query: 243 SVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICL 302
N V + V + D A++ D + + R+I
Sbjct: 61 GSVYPGMN--DSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSI-- 116
Query: 303 PRGRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFL 362
R + G + G+ + +++ V A Y
Sbjct: 117 -RQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYT------------ 163
Query: 363 CAGRATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVT-YFMPWITKN 421
D+ +G+SG ++ D VG+ + G G + T F+ +I
Sbjct: 164 ------IDTFSGNSGSAML--DQNQQIVGVHNAGYSNGT---INGGPKATAAFVEFINYA 212
Query: 422 LKK 424
+
Sbjct: 213 KAQ 215
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 71.7 bits (175), Expect = 1e-14
Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 30/222 (13%)
Query: 196 EQNEWPWVVAIF---NSGKQFCGGSLIDTQH---VLTAAHCVAHMSSWDVAKLSVNLGDH 249
+ P + +F N G C +++ + + V TA HC+ + A+ V +
Sbjct: 2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAY 61
Query: 250 NIKQKNEVKHVERKVKRLVRHKAFDMRT-LYNDVAILTLDKPVKYSDTIRAIC-LPRGRA 307
+ E +H + LV + R +D A L+ + + P
Sbjct: 62 D---YGESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFN 118
Query: 308 SYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRA 367
G+ + G+ + Q C G C
Sbjct: 119 QPRGQYYSAYGYPAAAPFNGQ------------ELHSCHGTATNDPMGSSTQGIPC---- 162
Query: 368 TKDSCTGDSGGPLMVN-DGKWTQVGIVSWGIGCGKGEYPGVY 408
+ G SGGP + Q S+G G Y
Sbjct: 163 --NMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPNVMFGPY 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 52/286 (18%), Positives = 89/286 (31%), Gaps = 92/286 (32%)
Query: 22 RSSRQKRQFLAFSIPTIVTVNP---CVTNRGLLGQCLRFKQCYPYLK---LPD--FIWEP 73
R+ + FSI IV NP + G G+ +R + Y + + D E
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR--ENYSAMIFETIVDGKLKTEK 1705
Query: 74 VIYD-SFDSCSYI--APDG-------TQGVGVCCTTPLQGGYPII---S----QDLSEEP 116
+ + + S SY + G TQ P + +DL +
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQ--------------PALTLMEKAAFEDLKSKG 1751
Query: 117 EIPTYPSFAFNWPPPVPTHPPDHTPATHPPSI------VSSTETAHFPTEVPV------T 164
IP +FA H S+ S + + V V T
Sbjct: 1752 LIPADATFA------------GH-------SLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 165 TTEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNEW---------PWVVAI--FNS-GKQ 212
A D G ++ R+ + E ++ W+V I +N +Q
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 213 F-CGGSL--IDT-QHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQK 254
+ G L +DT +VL + D+ +L +L ++
Sbjct: 1853 YVAAGDLRALDTVTNVLNF----IKLQKIDIIELQKSLSLEEVEGH 1894
Score = 43.9 bits (103), Expect = 9e-05
Identities = 57/281 (20%), Positives = 78/281 (27%), Gaps = 101/281 (35%)
Query: 145 PPSIVS-STETAH-FPTEVPVTTTEAGKVDM-SCGQKNGYQDLDQ---ERIVGGQNAEQN 198
PPSI+ S E P+ P M S +L Q + V N+
Sbjct: 320 PPSILEDSLENNEGVPS--P----------MLSI------SNLTQEQVQDYVNKTNSHLP 361
Query: 199 EWPWV-VAIFNSGKQF-CGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNE 256
V +++ N K G + S D ++
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--------------- 406
Query: 257 VKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPV------KY-SDTIRAIC--LPRGRA 307
+ ERK+K F R L PV I L +
Sbjct: 407 IPFSERKLK-------FSNRFL-----------PVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 308 SYEG---KI---ATVIGWGSLRE---SGPQPAVLQKVNIPV-WTNA-DCKARYGPVAPGG 356
S+ +I T G LR S + V + +PV W KA
Sbjct: 449 SFNAKDIQIPVYDTFDG-SDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT-------- 499
Query: 357 IVDHFLCAGRATKDSCTGDSG-GPLM--VNDGKWTQVGIVS 394
H L G G SG G L DG +V IV+
Sbjct: 500 ---HILDFGPG------GASGLGVLTHRNKDGTGVRV-IVA 530
Score = 36.6 bits (84), Expect = 0.020
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 63/166 (37%)
Query: 4 TPDQVRLSGLPDT---TSHTLR---------------SSRQKR---QFLAFSIP----TI 38
+ +SG P + + TLR S R+ + +FL + P +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 39 VTVNPCVTNRGLLGQCLRFKQCYPYLKLPDFIWEPVIYDSFDSCSYIAPDGTQGVGVCCT 98
V + + L+ + F +++P +YD+FD D
Sbjct: 433 VPASDLINKD-LVKNNVSFNA--KDIQIP-------VYDTFD-----GSD---------- 467
Query: 99 TPLQGGYPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATH 144
L+ IS+ + + I P W ATH
Sbjct: 468 --LRVLSGSISERIVD--CIIRLP---VKWETTT------QFKATH 500
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 48.5 bits (114), Expect = 2e-06
Identities = 34/226 (15%), Positives = 58/226 (25%), Gaps = 33/226 (14%)
Query: 203 VVAIFNSGKQFCGGSLID------TQHVLTAAHCVAHMS----SWDVAKLSVNLGDHNIK 252
V A SG C GSL++ + LTA HC + S V N
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPN 84
Query: 253 QKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRASYEGK 312
+ + + + +D +L L+ +
Sbjct: 85 TPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAA-----------NPAFNLFWAG 133
Query: 313 IATVIGWGSLRESGPQPAVLQ--KVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRATKD 370
W ++ P + V +N+ + G H + +
Sbjct: 134 ------WDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGG 187
Query: 371 SCTGDSGGPLMVNDGKWTQVGIVSWGIG-CGKG--EYPGVYTRVTY 413
S G + + K +G + G C Y RV
Sbjct: 188 VTEPGSSGSPIYSPEKR-VLGQLHGGPSSCSATGTNRSDQYGRVFT 232
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 44.4 bits (104), Expect = 3e-05
Identities = 15/141 (10%), Positives = 42/141 (29%), Gaps = 16/141 (11%)
Query: 194 NAEQNEWPWVVAIF---NSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHN 250
+ + V I +G G ++ +LT H V A + +
Sbjct: 13 DTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFP----S 68
Query: 251 IKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYS---DTIRAICLPRGRA 307
++ + +++ ++ D+AI+ + + ++ +
Sbjct: 69 AINQDNYPNGGFTAEQITKYSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAE 122
Query: 308 SYEGKIATVIGWGSLRESGPQ 328
+ + TV G+ +
Sbjct: 123 TQTNQNITVTGYPGDKPVATM 143
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 43.1 bits (101), Expect = 9e-05
Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 40/229 (17%)
Query: 193 QNAEQNEWPWVVAI---FNSGKQFCGGSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDH 249
+ + V I +G G ++ +LT H V A +
Sbjct: 12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSA-- 69
Query: 250 NIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRASY 309
++ + +++ ++ D+AI+ +
Sbjct: 70 --INQDNYPNGGFTAEQITKYSG------EGDLAIVKFSPNEQNK--------------- 106
Query: 310 EGKIATVIGWGSLRESGPQPAVLQKVNI---PVWTNADCKARYGPVAPGGIVDHFLCAGR 366
I V+ ++ + + V Q + + P D + G I A +
Sbjct: 107 --HIGEVVKPATMSNNA-ETQVNQNITVTGYP----GDKPVATMWESKGKITYLKGEAMQ 159
Query: 367 ATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFM 415
+ G+SG P+ + K +GI G+ + V F+
Sbjct: 160 YDLSTTGGNSGSPVF--NEKNEVIGIHWGGVPNEFNGAVFINENVRNFL 206
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 42.6 bits (100), Expect = 1e-04
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 8/146 (5%)
Query: 177 QKNGYQDLDQERIVGGQNAEQNEWPWVVAIFNSGKQFCGGSLIDTQHVLTAAHCVAHMSS 236
QK D+E + ++ + V +F G G LI ++T H +
Sbjct: 13 QKFEVPPTDKELYTHITDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAK 72
Query: 237 WDVAKLSVNLGDHNIKQKNEVKHVERKVK-RLVRHKAFDMRTLYNDVAILTLDKPVKYS- 294
+ + +KNE K + ++ + D+AI+ L K
Sbjct: 73 NPS-NIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGL---DLAIIKLKPNEKGES 128
Query: 295 --DTIRAICLPRGRASYEGKIATVIG 318
D I+ +P +G +++G
Sbjct: 129 AGDLIQPANIPDHIDIAKGDKYSLLG 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 20/219 (9%), Positives = 60/219 (27%), Gaps = 40/219 (18%)
Query: 93 VGVCCTT-----PLQGGYPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPS 147
+ C + LQ I + + + + + P +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENC 246
Query: 148 I-----VSSTETA-HFPTE--VPVTTTEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNE 199
+ V + + F + +TT D + LD ++ +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS--MTLTPDEVK 304
Query: 200 -----WPWVVAIFNSGKQFCGGS--LIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIK 252
+ + ++ + + + A +++WD N N
Sbjct: 305 SLLLKYLDC-RPQDLPREVLTTNPRRLS----IIAESIRDGLATWD------NWKHVNCD 353
Query: 253 QKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPV 291
+ + +E + L + + R +++ +++ +
Sbjct: 354 KLTTI--IESSLNVL---EPAEYRKMFDRLSVFPPSAHI 387
Score = 28.7 bits (63), Expect = 4.9
Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 80/225 (35%)
Query: 233 HMSSWDVAKLSVNLGD------HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILT 286
HM ++ + D + K V+ K ++ + D I+
Sbjct: 6 HMD-FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--------HIIM 56
Query: 287 LDKPVKYSDTIRAICLPRGRASYEGKIATVI----GW--GSLRESGPQPA---------- 330
V + + L + + + V+ + ++ QP+
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 331 --------VLQKVNI----PVWT--NADCKARYGPVAPGGIVDHFLCAGRATKDSCTGDS 376
V K N+ P A + R ++ G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK----NVLID----G----------- 157
Query: 377 GGPLMVNDGKWTQVGIV--SWGIGCGKGEYPGVYTRVTYFMPWIT 419
++ GK V S+ + C ++ W+
Sbjct: 158 ----VLGSGKTWVALDVCLSYKVQCKMDF--KIF--------WLN 188
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 39.4 bits (92), Expect = 0.001
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 52/219 (23%)
Query: 216 GSLIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVER---------KVKR 266
G ++ +LT H + D N N + K + +V+
Sbjct: 26 GFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEE 85
Query: 267 LVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRASYEGKIATVIGWGSLRESG 326
+ ++V K + I+ I P K V+ +
Sbjct: 86 RAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHP-----YKNKYVLYESTGPVMS 140
Query: 327 PQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFLCAGRATKDSCTGDSGGPLMVNDGK 386
+ + + +A G+SG P++ +
Sbjct: 141 VEGSSIV-------YSAH-------TES-------------------GNSGSPVL--NSN 165
Query: 387 WTQVGIVSWGIGCGKGEYPGVYTRVTYFMPWITKNLKKN 425
VGI T P I K + +N
Sbjct: 166 NELVGIHFASDVKNDDNRNAYGVYFT---PEIKKFIAEN 201
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 35.6 bits (82), Expect = 0.013
Identities = 35/203 (17%), Positives = 53/203 (26%), Gaps = 56/203 (27%)
Query: 220 DTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLY 279
++ +TA HC ++W + +G +F
Sbjct: 24 GARYFVTAGHCTNISANWSASSGGSVVGV-------------------REGTSFP----T 60
Query: 280 NDVAILTLDKPVKYSDTIR-----AICLPRGRASYEGKIATVIGWGSLRESGPQPAVLQK 334
ND I+ + T+ + + G+ G + SG AV
Sbjct: 61 NDYGIVRYTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVT 120
Query: 335 VNIPVWTNADCKARYGPVAPGGIVDHFLCAGRATKDSCTGDSGGPLMVNDGKWTQVGIVS 394
VN G V + + R T S GDSGG +GI S
Sbjct: 121 VNYG----------------DGPVYNMV---RTTACSAGGDSGGAHFAGS---VALGIHS 158
Query: 395 WGIGCGKGEYPGVYTRVTYFMPW 417
GC P
Sbjct: 159 GSSGCSGTA------GSAIHQPV 175
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 35.2 bits (81), Expect = 0.018
Identities = 40/199 (20%), Positives = 54/199 (27%), Gaps = 50/199 (25%)
Query: 220 DTQHVLTAAHCVAHMSSWDVAKLSVNLGDHNIKQKNEVKHVERKVKRLVRHKAFDMRTLY 279
T + LTA HC ++W N V +F
Sbjct: 24 STYYFLTAGHCTDGATTW-----WANSAR-------------TTVLGTTSGSSFP----N 61
Query: 280 NDVAILTLDKPVKYSDTIRAICLPRGRAS-YEGKIATVIGWGSLRESGPQPAVLQKVNIP 338
ND I+ D A+ G T G + SG A+ VN
Sbjct: 62 NDYGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTGTHSGSVTALNATVNYG 121
Query: 339 VWTNADCKARYGPVAPGGIVDHFLCAGRATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIG 398
G +V + R + GDSGGPL +G+ S G G
Sbjct: 122 ---------------GGDVVYGMI---RTNVCAEPGDSGGPLYSGT---RAIGLTSGGSG 160
Query: 399 CGKGEYPGVYTRVTYFMPW 417
T+F P
Sbjct: 161 NCSSG------GTTFFQPV 173
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 34.2 bits (78), Expect = 0.039
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 374 GDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYT--RVTYFMPW 417
GDSGG + + G G++S G G G+ R + F
Sbjct: 141 GDSGGSWITSAG--QAQGVMSGGNVQSNGNNCGIPASQRSSLFERL 184
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 34.7 bits (79), Expect = 0.075
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 253 QKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAI 300
++ E++ + R++ LVR K + Y DVAIL P Y D ++ +
Sbjct: 320 RRAELEGIAREIHALVREKGYR----YKDVAILARQ-PEDYKDMVKEV 362
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 32.5 bits (74), Expect = 0.15
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 354 PGGIVDHFLCAGRATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTY 413
G V R T + GDSGGP + G+ S G G + +T+
Sbjct: 121 AEGTVTGLT---RTTACAEGGDSGGPWLTGS---QAQGVTSGGTGDCRS------GGITF 168
Query: 414 FMPW 417
F P
Sbjct: 169 FQPI 172
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 32.2 bits (73), Expect = 0.18
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 354 PGGIVDHFLCAGRATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTY 413
P G V + R T + GDSGG L+ + G+ S G G + T+
Sbjct: 118 PEGTVRGLI---RTTVCAEPGDSGGSLLAGN---QAQGVTSGGSGNCRT------GGTTF 165
Query: 414 FMPW 417
F P
Sbjct: 166 FQPV 169
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 32.3 bits (73), Expect = 0.18
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 26/170 (15%)
Query: 249 HNIKQKNEVKHVERKVKRLVRHKAFDMRTLYN------DVAILTLDKPVKYSDTIRAICL 302
H +K + ++ + ++ F+ D A++ L + K D +
Sbjct: 47 HLFAEKYDKIMLDGRAMTDSDYRVFEFEIKVKGQDMLSDAALMVLHRGNKVRDITKHFR- 105
Query: 303 PRGRASYEGKIATVIGWGSLRESGPQPAVLQKVNIPVWTNADCKARYGPVAPGGIVDHFL 362
+ K T + + I K G +
Sbjct: 106 ----DTARMKKGTPVVGVVNNADVGRL-------IFSGEALTYKDIV-VSMDGDTMPGLF 153
Query: 363 CAGRATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVT 412
AT+ G +GG ++ DG T + G G G + V+
Sbjct: 154 AYKAATRA---GYAGGAVLAKDGADTFI----VGTHSAGGNGVGYCSCVS 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.20
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 28/58 (48%)
Query: 253 QKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKPVKYSDTIRAICLPRGRASYE 310
+K +K ++ +K LY D+ A+ + +A+ E
Sbjct: 18 EKQALKKLQASLK------------LY---------AD----DSAPALAI---KATME 47
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 31.6 bits (72), Expect = 0.29
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 21/100 (21%)
Query: 193 QNAEQNEWPWVVAIFNSGKQFCGGS--LIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHN 250
Q + N +P+ N F + +I ++T H D N GD
Sbjct: 7 QVKDTNNFPY-----NGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPN-GDKG 60
Query: 251 IKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKP 290
++K + + D++++ +++
Sbjct: 61 NGGIYKIKSI----------SDYPGDE---DISVMNIEEQ 87
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 31.0 bits (70), Expect = 0.46
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 374 GDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRVTYFMPW 417
GDSGG + G+ S G G + T++
Sbjct: 141 GDSGGSFISGT---QAQGVTSGGSGNCRTG------GTTFYQEV 175
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 30.6 bits (69), Expect = 0.56
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 352 VAPGGIVDHFLCAGRATKDSCTGDSGGPLMVNDGKWTQVGIVSWGIGCGKGEYPGVYTRV 411
GIV + + + GDSGG L T +G+ S G G +
Sbjct: 116 YGSSGIVYGMI---QTNVCAQPGDSGGSLFAGS---TALGLTSGGSGNCRT------GGT 163
Query: 412 TYFMPW 417
T++ P
Sbjct: 164 TFYQPV 169
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 30.2 bits (66), Expect = 1.5
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 106 PIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVPVTT 165
P++ + + + P ++ N P PP ++ + TE P+
Sbjct: 415 PVVPGKDNTDGKKPNIW-YSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKP 473
Query: 166 T 166
Sbjct: 474 A 474
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 29.3 bits (66), Expect = 1.7
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 20/100 (20%)
Query: 193 QNAEQNEWPWVVAIFNSGKQFCGGS--LIDTQHVLTAAHCVAHMSSWDVAKLSVNLGDHN 250
+ + + P+ NS F GG+ ++ ++T H + H+
Sbjct: 6 EITDATKEPY-----NSVVAFVGGTGVVVGKNTIVTNKHIAKSND-----IFKNRVSAHH 55
Query: 251 IKQKNEVKHVERKVKRLVRHKAFDMRTLYNDVAILTLDKP 290
+ VK +V + + D+AI+ + +
Sbjct: 56 SSKGKGGG--NYDVKDIV---EYPGKE---DLAIVHVHET 87
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 30.1 bits (66), Expect = 1.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 373 TGDSGGPLMVND---GKWTQVGIVSWGIGCGKGEY 404
GDSG PL V D GKW +G + G K +
Sbjct: 260 LGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSW 294
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 29.5 bits (66), Expect = 2.3
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 4/50 (8%)
Query: 129 PPPVPTHPPDHTPATHPPSIVSSTETAHFPTEVP----VTTTEAGKVDMS 174
P T P + + T + V G +D
Sbjct: 3 PAMKDKSKSHEEEKTDPTAGAHAPVVFTLRTGIAEGRMVYIGVGGDIDHK 52
>2ikd_A Prophenoloxidase activating proteinase-2; beta-sheet, double
helix, hydrolase; NMR {Manduca sexta}
Length = 66
Score = 27.2 bits (60), Expect = 2.4
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 42 NPCVTNRGLLGQCLRFKQCYPYLKL 66
C G C QC K+
Sbjct: 11 QACTLPNNDKGTCKSLLQCDVASKI 35
>2kep_A General secretion pathway protein G; methylation, transport,
transport protein; NMR {Pseudomonas aeruginosa}
Length = 110
Score = 27.2 bits (60), Expect = 4.0
Identities = 10/43 (23%), Positives = 12/43 (27%)
Query: 103 GGYPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHP 145
YP Q L + PT NW P +P
Sbjct: 31 FAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNP 73
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase;
2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Length = 428
Score = 28.7 bits (64), Expect = 4.5
Identities = 11/78 (14%), Positives = 18/78 (23%)
Query: 66 LPDFIWEPVIYDSFDSCSYIAPDGTQGVGVCCTTPLQGGYPIISQDLSEEPEIPTYPSFA 125
LP + + D + + Q + + E T
Sbjct: 34 LPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAV 93
Query: 126 FNWPPPVPTHPPDHTPAT 143
P P P + TP
Sbjct: 94 LQKPQPQLYRPIEETPCH 111
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 28.0 bits (62), Expect = 5.8
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 8/110 (7%)
Query: 92 GVG--VCCTTPLQGGYPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPSIV 149
GV + T G D+ E I + P H + +V
Sbjct: 46 GVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMV 105
Query: 150 SSTETAHFPTEVPVTTTEAGKVDMSCGQKNGYQDLDQERIVGGQNAEQNE 199
+ T +AG + + +E++ N+
Sbjct: 106 -----DEIEQGIDGTELKAGIIAEIGTSEGKITP-LEEKVFIAAALAHNQ 149
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 27.1 bits (59), Expect = 8.6
Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 100 PLQGGYPIISQDLSEEPEIPTYPSFAFNWPPPVPTHPPDHTPATHPPSIVSSTETAHFPT 159
+Q GY +I I T TP ++T T PT
Sbjct: 159 RIQSGYFVIQPGEINSAPIATATPTTKPTAFASTMPTVTLTP------TPTATTTTTIPT 212
Query: 160 EVPVTT 165
VP T
Sbjct: 213 AVPTTE 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.441
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,704,053
Number of extensions: 399141
Number of successful extensions: 1539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 136
Length of query: 425
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 329
Effective length of database: 4,021,377
Effective search space: 1323033033
Effective search space used: 1323033033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)