Query psy10446
Match_columns 158
No_of_seqs 118 out of 308
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:22:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03416 Peptidase_C54: Peptid 100.0 2.9E-38 6.3E-43 267.0 11.4 131 22-153 52-185 (278)
2 KOG2674|consensus 100.0 1.7E-36 3.7E-41 266.3 8.4 133 22-154 112-260 (409)
3 COG4892 Predicted heme/steroid 54.0 14 0.0003 26.2 2.5 25 84-109 5-29 (81)
4 KOG2433|consensus 47.7 1E+02 0.0022 28.8 7.7 94 41-146 415-523 (577)
5 cd06535 CIDE_N_CAD CIDE_N doma 43.9 37 0.0008 24.1 3.5 34 81-114 19-58 (77)
6 PF07244 Surf_Ag_VNR: Surface 39.2 32 0.00069 22.3 2.5 23 68-90 24-46 (78)
7 smart00266 CAD Domains present 36.8 23 0.0005 24.9 1.5 22 95-116 37-59 (74)
8 PF01475 FUR: Ferric uptake re 36.2 1E+02 0.0022 22.2 5.0 46 40-90 9-54 (120)
9 cd00419 Ferrochelatase_C Ferro 34.2 66 0.0014 24.3 3.8 40 72-113 71-113 (135)
10 cd07153 Fur_like Ferric uptake 33.0 1.8E+02 0.0038 20.5 6.5 44 42-90 4-47 (116)
11 COG3782 Uncharacterized protei 31.5 26 0.00055 30.2 1.3 19 71-89 138-156 (289)
12 PF03965 Penicillinase_R: Peni 31.5 74 0.0016 23.0 3.6 56 40-102 4-64 (115)
13 PF07106 TBPIP: Tat binding pr 29.8 1.7E+02 0.0038 22.5 5.7 55 41-103 3-62 (169)
14 cd01615 CIDE_N CIDE_N domain, 29.5 36 0.00078 24.1 1.5 23 94-116 38-61 (78)
15 cd06538 CIDE_N_FSP27 CIDE_N do 28.0 41 0.00088 24.0 1.6 35 82-116 20-60 (79)
16 KOG2674|consensus 27.8 4.5 9.8E-05 36.8 -4.1 46 41-90 160-205 (409)
17 PRK03957 V-type ATP synthase s 27.1 1.9E+02 0.0041 20.8 5.1 51 77-142 28-78 (100)
18 KOG0886|consensus 26.7 55 0.0012 26.2 2.3 42 77-118 76-117 (167)
19 COG0649 NuoD NADH:ubiquinone o 25.1 22 0.00049 32.3 -0.2 39 58-107 314-352 (398)
20 TIGR00723 ttdB_fumA_fumB hydro 24.9 34 0.00073 27.6 0.8 66 38-103 23-93 (168)
21 COG1072 CoaA Panthothenate kin 23.9 1.1E+02 0.0025 26.6 3.9 38 77-114 94-131 (283)
22 cd06536 CIDE_N_ICAD CIDE_N dom 23.2 59 0.0013 23.2 1.7 21 96-116 42-63 (80)
23 PF01418 HTH_6: Helix-turn-hel 22.8 81 0.0017 21.3 2.3 42 38-88 15-58 (77)
24 COG4977 Transcriptional regula 22.5 48 0.001 29.3 1.4 52 37-88 218-281 (328)
25 cd02514 GT13_GLCNAC-TI GT13_GL 22.4 1.1E+02 0.0025 26.9 3.7 29 78-106 12-41 (334)
26 PRK02228 V-type ATP synthase s 21.3 3.2E+02 0.0069 19.6 5.5 50 77-138 28-79 (100)
27 PLN03052 acetate--CoA ligase; 21.1 53 0.0012 31.2 1.5 16 51-66 57-72 (728)
28 cd06539 CIDE_N_A CIDE_N domain 20.8 1.4E+02 0.0031 21.1 3.3 36 81-116 19-61 (78)
29 KOG3093|consensus 20.8 2.5E+02 0.0054 23.4 5.1 36 82-117 35-72 (200)
30 PRK09462 fur ferric uptake reg 20.5 2.6E+02 0.0057 21.0 5.0 48 39-90 17-64 (148)
No 1
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=100.00 E-value=2.9e-38 Score=266.99 Aligned_cols=131 Identities=36% Similarity=0.656 Sum_probs=98.6
Q ss_pred ccccCCCCcccCCC-CChHHHHHHHHhhcCCCCCCCchhHHHHhhhhc-CCCCCcccChHHHHHHHHHHhhcCCCCCeEE
Q psy10446 22 PSSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASE-GKAVGEWFGPNTVAQVLRKLAKYDDWSSIVF 99 (158)
Q Consensus 22 ~~~~LGRdWR~~~~-~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~-gk~pGeWfGPst~a~vlk~L~~~~~~~~l~V 99 (158)
.+|++||+||+... +..+.+.+||+||.|+|+|||||||||++|... ||+||||||||++|++|++|+++....+++|
T Consensus 52 ~~~~lgr~~~~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~~~~~l~v 131 (278)
T PF03416_consen 52 LRHHLGRDWRWPDNSDNNEEYRRILSLFQDSPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEADLSGLRV 131 (278)
T ss_dssp HHHHC-TT--TTTTSS--HHHHHHHHTTSSSTTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC-TTT--EE
T ss_pred HHHhhcccccccccccCcHHHHHHHHhcCCCCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhccccCceE
Confidence 47899999999866 567899999999999999999999999999875 9999999999999999999999888899999
Q ss_pred EEecCCceeHHHHHHHhhhccccCCCCCCCceeEEEEeecccc-cccchhhhhhc
Q psy10446 100 HVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTL-VVNQVKKLCTT 153 (158)
Q Consensus 100 yVa~Dg~vy~ddV~~l~~~~~~~~~~~~~w~plLILIPlRLGl-~in~iy~~c~~ 153 (158)
||+.|+++|.+|+.+++..... ......|+|||||||+|||+ ++|+.|.++++
T Consensus 132 ~v~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~vLlliplrLGl~~in~~Y~~~l~ 185 (278)
T PF03416_consen 132 YVSSDGTIYYDDVEELCSNSNP-TKQSSWWKPVLLLIPLRLGLDKINPKYIPSLK 185 (278)
T ss_dssp EE-BTTEEEHHHHHHHHCCS-S------CE--EEEEEEEE-SSSS--GGGHHHHH
T ss_pred EEeeccccchhHHHHHHhhhcc-ccccccCceEEEEEEeecCCCCCCHHHHHHHH
Confidence 9999999999999998865422 11245679999999999999 79999999875
No 2
>KOG2674|consensus
Probab=100.00 E-value=1.7e-36 Score=266.28 Aligned_cols=133 Identities=41% Similarity=0.789 Sum_probs=120.3
Q ss_pred ccccCCCCcccCCCCC-hHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEE
Q psy10446 22 PSSFSGRDWQWNVNSK-EEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFH 100 (158)
Q Consensus 22 ~~~~LGRdWR~~~~~~-~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~Vy 100 (158)
+++||||||||.++++ ++.|.+||++|.|.|+||||||||+++|...|+++|+|||||++|+++++|..++++..+.+|
T Consensus 112 ~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~~~~G~~~~~~~g~WfGP~~~a~~~~~L~~~~~~~~~~~~ 191 (409)
T KOG2674|consen 112 ICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQIVQMGVGEGKAVGSWFGPNTVAQVLKKLARFDPWSSLAVY 191 (409)
T ss_pred HHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHHHHHHhhccCCCccccCCcHHHHHHHHhhccCCCCCccEE
Confidence 4789999999987655 788999999999999999999999999999999999999999999999999998889999999
Q ss_pred EecCCceeHHHHHHHhhhcccc--------------CCCCCCCceeEEEEeecccc-cccchhhhhhcc
Q psy10446 101 VALDNTLVVNQVKKLCTTNKRK--------------LAKYDDWSSIVFHVALDNTL-VVNQVKKLCTTN 154 (158)
Q Consensus 101 Va~Dg~vy~ddV~~l~~~~~~~--------------~~~~~~w~plLILIPlRLGl-~in~iy~~c~~~ 154 (158)
|+.|+.+.++|+.+.|+..+.. .+...+|||||||||||||+ ++||+|.+|+++
T Consensus 192 v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ewkpllLLVPvRLG~~~iNp~Yvp~lk~ 260 (409)
T KOG2674|consen 192 VAMDNAVIIRDIVEKCRRGPLPALTIEDATKQSLEFSNGITEWKPLLLLIPLRLGITSINPSYVPALKE 260 (409)
T ss_pred EecccceEEeeeehhcccCCcccceecccchhhcccCCCCCCCcceEEEEEeeecccccChHHHHHHHH
Confidence 9999999999999888764211 11357899999999999999 799999999875
No 3
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=53.97 E-value=14 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.3
Q ss_pred HHHHHhhcCCCCCeEEEEecCCceeH
Q psy10446 84 VLRKLAKYDDWSSIVFHVALDNTLVV 109 (158)
Q Consensus 84 vlk~L~~~~~~~~l~VyVa~Dg~vy~ 109 (158)
.|..|.+++..++ ..||+.||+||.
T Consensus 5 TLEELs~ynG~nG-paYiA~~G~VYD 29 (81)
T COG4892 5 TLEELSKYNGENG-PAYIAVNGTVYD 29 (81)
T ss_pred cHHHHHhhcCCCC-CeEEEECCEEEe
Confidence 5788888888777 899999999984
No 4
>KOG2433|consensus
Probab=47.72 E-value=1e+02 Score=28.77 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=58.4
Q ss_pred HHHHHHhhcCC--CCCCCchhHHHHhhh-hcCCCC------CcccChHHHHHHHHHHhhcCCCCCeEEEEecCCceeH--
Q psy10446 41 YLKILKMFEDR--RTAPYSIHQIALTGA-SEGKAV------GEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVV-- 109 (158)
Q Consensus 41 ~~~IL~lF~D~--p~aPFSIH~iv~~G~-~~gk~p------GeWfGPst~a~vlk~L~~~~~~~~l~VyVa~Dg~vy~-- 109 (158)
...|-+||.=. .++|---|+=++.+. ..+-|| -||.|-+.++.+|+.|++-. .--++|++...|..
T Consensus 415 lQTIcSWFilqGYT~~pIPtHrEiQqaLvdi~DKpA~FVGSrQWIGStEis~vLn~ll~~~---skil~v~sGaEva~~~ 491 (577)
T KOG2433|consen 415 LQTICSWFILQGYTDKPIPTHREIQQALVDIQDKPAKFVGSRQWIGSTEISFVLNELLKLE---SKILAVNSGAEVAERV 491 (577)
T ss_pred HHHHHHHHHHcCccCCCCCcHHHHHHHHHhccCcccceecccceecchhHHHHHHHHhccc---eEEEEeccccHHHHHH
Confidence 35688999544 688888899888885 455443 38999999999999998721 11234444333322
Q ss_pred HHHHHHhhhccccCCCCCCCceeEE----EEeecccccccc
Q psy10446 110 NQVKKLCTTNKRKLAKYDDWSSIVF----HVALDNTLVVNQ 146 (158)
Q Consensus 110 ddV~~l~~~~~~~~~~~~~w~plLI----LIPlRLGl~in~ 146 (158)
.|+..+|.... .|+.| |.-+-||++.|+
T Consensus 492 rELA~HFqt~G---------TPVMIGGgvLAHTIlGVd~n~ 523 (577)
T KOG2433|consen 492 RELARHFQTSG---------TPVMIGGGVLAHTILGVDFND 523 (577)
T ss_pred HHHHHHhhccC---------CcEEEccceeeeeEeeeeeec
Confidence 24445554432 45553 444556665443
No 5
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=43.87 E-value=37 Score=24.07 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHHhh-----cC-CCCCeEEEEecCCceeHHHHHH
Q psy10446 81 VAQVLRKLAK-----YD-DWSSIVFHVALDNTLVVNQVKK 114 (158)
Q Consensus 81 ~a~vlk~L~~-----~~-~~~~l~VyVa~Dg~vy~ddV~~ 114 (158)
+|.+++.|.+ .. ...+..+|...||+...||-.+
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVtEeyF~ 58 (77)
T cd06535 19 AAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVTEEYFP 58 (77)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEehHHHHh
Confidence 3455555553 22 2247799999999999654443
No 6
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=39.20 E-value=32 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.3
Q ss_pred cCCCCCcccChHHHHHHHHHHhh
Q psy10446 68 EGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 68 ~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
.+.+||++|-|..+....++|-+
T Consensus 24 l~~~~G~~~~~~~i~~~~~~l~~ 46 (78)
T PF07244_consen 24 LGLKPGDPFNPEKIEEDIERLQD 46 (78)
T ss_dssp HSS-TTSBECHHHHHHHHHHHHH
T ss_pred cCCCCCCEeCHHHHHHHHHHHHH
Confidence 68899999999999999999985
No 7
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=36.78 E-value=23 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=16.3
Q ss_pred CCeEEEEecCCceeH-HHHHHHh
Q psy10446 95 SSIVFHVALDNTLVV-NQVKKLC 116 (158)
Q Consensus 95 ~~l~VyVa~Dg~vy~-ddV~~l~ 116 (158)
.++.++...||+... +|-.+..
T Consensus 37 ~~~~l~L~eDGT~VddEeyF~tL 59 (74)
T smart00266 37 SPVTLVLEEDGTIVDDEEYFQTL 59 (74)
T ss_pred CCcEEEEecCCcEEccHHHHhcC
Confidence 478999999999884 4555443
No 8
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.24 E-value=1e+02 Score=22.16 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=37.1
Q ss_pred HHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 40 AYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 40 ~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
+-..||+.+.+.+. |||.-.|.+.-.+.| ...|++|+=++|+.|.+
T Consensus 9 ~R~~Il~~l~~~~~-~~ta~ei~~~l~~~~----~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 9 QRLAILELLKESPE-HLTAEEIYDKLRKKG----PRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHHHHHSS-SEEHHHHHHHHHHTT----TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCCHHHHHHHhhhcc----CCcCHHHHHHHHHHHHH
Confidence 34779999999888 999999998877544 45688999999999997
No 9
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=34.19 E-value=66 Score=24.32 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCcccChHHHHHHHHHHhhcCCCCCeEEE---EecCCceeHHHHH
Q psy10446 72 VGEWFGPNTVAQVLRKLAKYDDWSSIVFH---VALDNTLVVNQVK 113 (158)
Q Consensus 72 pGeWfGPst~a~vlk~L~~~~~~~~l~Vy---Va~Dg~vy~ddV~ 113 (158)
||+|.+|+ +..+|++|.+. ...++.|. -..||.=...|+.
T Consensus 71 ~~~Wl~P~-~~~~l~~l~~~-G~~~i~v~p~gF~~D~~Etl~di~ 113 (135)
T cd00419 71 PGEWLEPS-TDDALEELAKE-GVKNVVVVPIGFVSDHLETLYELD 113 (135)
T ss_pred CCCCCCCC-HHHHHHHHHHc-CCCeEEEECCccccccHHHHHHHH
Confidence 79999998 45678888774 33444443 2358775555553
No 10
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.97 E-value=1.8e+02 Score=20.52 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=35.8
Q ss_pred HHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 42 LKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 42 ~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
..||+.+... ..|+|.-.+.+.-.+.+.. .+++|+=++|+.|++
T Consensus 4 ~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~----i~~~TVYR~L~~L~~ 47 (116)
T cd07153 4 LAILEVLLES-DGHLTAEEIYERLRKKGPS----ISLATVYRTLELLEE 47 (116)
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHhcCCC----CCHHHHHHHHHHHHh
Confidence 5688888876 5889999999887765443 578999999999997
No 11
>COG3782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.55 E-value=26 Score=30.20 Aligned_cols=19 Identities=37% Similarity=0.879 Sum_probs=14.9
Q ss_pred CCCcccChHHHHHHHHHHh
Q psy10446 71 AVGEWFGPNTVAQVLRKLA 89 (158)
Q Consensus 71 ~pGeWfGPst~a~vlk~L~ 89 (158)
.||+||||+.--+...+|-
T Consensus 138 ~p~dw~Gp~~~DrL~~Kl~ 156 (289)
T COG3782 138 GPEDWYGPDPEDRLLGKLA 156 (289)
T ss_pred CcccccCCChhhhHHHHHH
Confidence 3899999998777766664
No 12
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=31.50 E-value=74 Score=22.96 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcC-----CCCCeEEEEe
Q psy10446 40 AYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD-----DWSSIVFHVA 102 (158)
Q Consensus 40 ~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~-----~~~~l~VyVa 102 (158)
.+.+|++.+-+.+. -+.+.+++.-.+ . .+| .++|+..+|++|++.. ...+-.+|.+
T Consensus 4 ~E~~IM~~lW~~~~--~t~~eI~~~l~~---~-~~~-~~sTv~t~L~rL~~Kg~l~~~~~gr~~~Y~p 64 (115)
T PF03965_consen 4 LELEIMEILWESGE--ATVREIHEALPE---E-RSW-AYSTVQTLLNRLVEKGFLTREKIGRAYVYSP 64 (115)
T ss_dssp HHHHHHHHHHHHSS--EEHHHHHHHHCT---T-SS---HHHHHHHHHHHHHTTSEEEEEETTCEEEEE
T ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHh---c-ccc-chhHHHHHHHHHHhCCceeEeecCCceEEEe
Confidence 45778888877665 677777776322 2 567 9999999999999721 2244556654
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.83 E-value=1.7e+02 Score=22.52 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcC-----CCCCeEEEEec
Q psy10446 41 YLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD-----DWSSIVFHVAL 103 (158)
Q Consensus 41 ~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~-----~~~~l~VyVa~ 103 (158)
...|+++|.. ..-|||..+++..-.. + ||=+++-.+|..|+... ...--.||++.
T Consensus 3 e~~Il~y~~~-qNRPys~~di~~nL~~---~----~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~ 62 (169)
T PF07106_consen 3 EDAILEYMKE-QNRPYSAQDIFDNLHN---K----VGKTAVQKALDSLVEEGKIVEKEYGKQKIYFAN 62 (169)
T ss_pred HHHHHHHHHH-cCCCCcHHHHHHHHHh---h----ccHHHHHHHHHHHHhCCCeeeeeecceEEEeeC
Confidence 3456777655 6789999999987542 1 33478999999999743 34567888765
No 14
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=29.51 E-value=36 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=17.0
Q ss_pred CCCeEEEEecCCcee-HHHHHHHh
Q psy10446 94 WSSIVFHVALDNTLV-VNQVKKLC 116 (158)
Q Consensus 94 ~~~l~VyVa~Dg~vy-~ddV~~l~ 116 (158)
..++.++...||+.. .||-.+..
T Consensus 38 ~~~~~lvL~eDGTeVddEeYF~tL 61 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_pred CCCeEEEEeCCCcEEccHHHHhcC
Confidence 367899999999988 45555443
No 15
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=27.96 E-value=41 Score=23.97 Aligned_cols=35 Identities=17% Similarity=-0.030 Sum_probs=21.2
Q ss_pred HHHHHHHhh-----cCCCCCeEEEEecCCcee-HHHHHHHh
Q psy10446 82 AQVLRKLAK-----YDDWSSIVFHVALDNTLV-VNQVKKLC 116 (158)
Q Consensus 82 a~vlk~L~~-----~~~~~~l~VyVa~Dg~vy-~ddV~~l~ 116 (158)
|.+|+.|.. ..-.....++...||+.. .||-.+..
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL 60 (79)
T cd06538 20 ADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL 60 (79)
T ss_pred cCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC
Confidence 445555542 222234779999999988 45555443
No 16
>KOG2674|consensus
Probab=27.78 E-value=4.5 Score=36.79 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 41 YLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 41 ~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
++.|-+||++++.|.+ +.+.+...+++++.|+++-..+.++++.++
T Consensus 160 ~~~~g~WfGP~~~a~~----~~~L~~~~~~~~~~~~v~~~~~vv~~d~~~ 205 (409)
T KOG2674|consen 160 GKAVGSWFGPNTVAQV----LKKLARFDPWSSLAVYVAMDNAVIIRDIVE 205 (409)
T ss_pred cCCCccccCCcHHHHH----HHHhhccCCCCCccEEEecccceEEeeeeh
Confidence 3788999999998877 777887788999999999999999988875
No 17
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=27.14 E-value=1.9e+02 Score=20.78 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEEEecCCceeHHHHHHHhhhccccCCCCCCCceeEEEEeecccc
Q psy10446 77 GPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTL 142 (158)
Q Consensus 77 GPst~a~vlk~L~~~~~~~~l~VyVa~Dg~vy~ddV~~l~~~~~~~~~~~~~w~plLILIPlRLGl 142 (158)
.|..+..++++|++.+ +..|.+-.+. +.+++.+... ...|++|.||-+-|.
T Consensus 28 ~~ee~~~~l~~l~~~~---d~gII~ite~--~~~~i~~~i~----------~~~P~Ii~IP~~~g~ 78 (100)
T PRK03957 28 NPEEAKNAIKELVEND---EIGIIIITER--IAEEIRDLIS----------VALPIIVEIPDKSGS 78 (100)
T ss_pred CHHHHHHHHHHHhhCC---CeEEEEEcHH--HHHHHHHHHh----------cCCCEEEEECCCCCC
Confidence 4688999999988643 3444332221 1223332221 348999999999875
No 18
>KOG0886|consensus
Probab=26.72 E-value=55 Score=26.16 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEEEecCCceeHHHHHHHhhh
Q psy10446 77 GPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTT 118 (158)
Q Consensus 77 GPst~a~vlk~L~~~~~~~~l~VyVa~Dg~vy~ddV~~l~~~ 118 (158)
-||++|.+||.|-+-+....=.--+...|.+..|||.++.+.
T Consensus 76 vpSasaLiIkaLKEPpRDRKk~knikh~Gni~~deiv~iar~ 117 (167)
T KOG0886|consen 76 VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVEIARI 117 (167)
T ss_pred cccHHHHHHHHhcCCcchhhhhccccccCcccHHHHHHHHHH
Confidence 399999999999763322222223567888999988766544
No 19
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=25.15 E-value=22 Score=32.28 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=30.3
Q ss_pred hhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEEEecCCce
Q psy10446 58 IHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTL 107 (158)
Q Consensus 58 IH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~VyVa~Dg~v 107 (158)
||++...+..+.+.+||+|++..+ +...+.+||.+||.-
T Consensus 314 i~~f~l~~~g~~vP~GE~y~~vE~-----------~kGE~g~yv~SDG~~ 352 (398)
T COG0649 314 IHHFKLVTEGFKVPAGEVYAAVEA-----------PKGELGVYIVSDGSN 352 (398)
T ss_pred hhheeeecccccCCCCceEEeeec-----------CCccEEEEEEeCCCC
Confidence 677776666677888999988654 448899999999875
No 20
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=24.89 E-value=34 Score=27.57 Aligned_cols=66 Identities=17% Similarity=0.347 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhcCCCCCCCchhHHHH-hhhhcCCCCCcc----cChHHHHHHHHHHhhcCCCCCeEEEEec
Q psy10446 38 EEAYLKILKMFEDRRTAPYSIHQIAL-TGASEGKAVGEW----FGPNTVAQVLRKLAKYDDWSSIVFHVAL 103 (158)
Q Consensus 38 ~~~~~~IL~lF~D~p~aPFSIH~iv~-~G~~~gk~pGeW----fGPst~a~vlk~L~~~~~~~~l~VyVa~ 103 (158)
+..|.+|+.+......-||.+..-+- .+-..-.+||.| .||+|.++.=+..-......++...|..
T Consensus 23 D~ah~rl~e~~~~g~~lP~dl~g~~Iy~~GP~~~~~g~~~~gs~GPTTS~RMd~y~~~ll~~~Gv~~~IGK 93 (168)
T TIGR00723 23 DEAHARLLELIDEGKELPFDLNGSVIYHAGPIVTKNGEWEVVSVGPTTSARMNPFEPELLEKLGVMAIIGK 93 (168)
T ss_pred HHHHHHHHHHHHcCCCCCcCCCCCEEEEeCCCCCCCCCceeEEeCCChHHHHHHhHHHHHHhCCcEEEEEC
Confidence 67899999999888888999876221 111233567888 8999999843222121122366777754
No 21
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=23.93 E-value=1.1e+02 Score=26.61 Aligned_cols=38 Identities=29% Similarity=0.179 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEEEecCCceeHHHHHH
Q psy10446 77 GPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKK 114 (158)
Q Consensus 77 GPst~a~vlk~L~~~~~~~~l~VyVa~Dg~vy~ddV~~ 114 (158)
|-||+|..++.|.+--+.....-.|.+||=.|.+.+.+
T Consensus 94 GKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~ 131 (283)
T COG1072 94 GKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLD 131 (283)
T ss_pred cHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhh
Confidence 55999999999998544444445689999999987753
No 22
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=23.22 E-value=59 Score=23.18 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=15.5
Q ss_pred CeEEEEecCCcee-HHHHHHHh
Q psy10446 96 SIVFHVALDNTLV-VNQVKKLC 116 (158)
Q Consensus 96 ~l~VyVa~Dg~vy-~ddV~~l~ 116 (158)
.+.++...||+.. .+|-.+..
T Consensus 42 ~~~lvL~eDGT~VddEeyF~tL 63 (80)
T cd06536 42 PITLVLAEDGTIVEDEDYFLCL 63 (80)
T ss_pred ceEEEEecCCcEEccHHHHhhC
Confidence 4899999999988 45555443
No 23
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=22.76 E-value=81 Score=21.30 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhcCCCC--CCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHH
Q psy10446 38 EEAYLKILKMFEDRRT--APYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKL 88 (158)
Q Consensus 38 ~~~~~~IL~lF~D~p~--aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L 88 (158)
.+.+.+|.+++.++|. +-.||+.+++.. |+ +|+|+.+-.|+|
T Consensus 15 s~~e~~Ia~yil~~~~~~~~~si~elA~~~---~v------S~sti~Rf~kkL 58 (77)
T PF01418_consen 15 SPTEKKIADYILENPDEIAFMSISELAEKA---GV------SPSTIVRFCKKL 58 (77)
T ss_dssp -HHHHHHHHHHHH-HHHHCT--HHHHHHHC---TS-------HHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCHHHHHHccHHHHHHHc---CC------CHHHHHHHHHHh
Confidence 4567899999999984 678898888874 33 368888888776
No 24
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=22.45 E-value=48 Score=29.28 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=40.4
Q ss_pred ChHHHHHHHHhhcCCCCCCCchhHHHHhh------------hhcCCCCCcccChHHHHHHHHHH
Q psy10446 37 KEEAYLKILKMFEDRRTAPYSIHQIALTG------------ASEGKAVGEWFGPNTVAQVLRKL 88 (158)
Q Consensus 37 ~~~~~~~IL~lF~D~p~aPFSIH~iv~~G------------~~~gk~pGeWfGPst~a~vlk~L 88 (158)
.++...++|.|..++.+.|.|+-.|++.. ++.|..|++||-==.+-++=..|
T Consensus 218 ~~~~l~~~i~~me~nle~plsl~~LA~~~~~S~R~leRlF~~~lG~sP~~yy~~lRL~~Ar~LL 281 (328)
T COG4977 218 RDPRLLRAIELMEANLEEPLSLEELADRAGLSRRQLERLFRAELGVSPARYYLRLRLERARRLL 281 (328)
T ss_pred CCHHHHHHHHHHHHhhcCCcCHHHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999875 13688999998655555443433
No 25
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=22.35 E-value=1.1e+02 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhhcC-CCCCeEEEEecCCc
Q psy10446 78 PNTVAQVLRKLAKYD-DWSSIVFHVALDNT 106 (158)
Q Consensus 78 Pst~a~vlk~L~~~~-~~~~l~VyVa~Dg~ 106 (158)
|..+..+|+.|.+.. ......++|++||.
T Consensus 12 p~~l~r~LesLl~~~p~~~~~~liIs~DG~ 41 (334)
T cd02514 12 PDYLRRMLDSLLSYRPSAEKFPIIVSQDGG 41 (334)
T ss_pred HHHHHHHHHHHHhccccCCCceEEEEeCCC
Confidence 678899999999865 66778999999996
No 26
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.26 E-value=3.2e+02 Score=19.56 Aligned_cols=50 Identities=4% Similarity=0.087 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEE-EecCC-ceeHHHHHHHhhhccccCCCCCCCceeEEEEee
Q psy10446 77 GPNTVAQVLRKLAKYDDWSSIVFH-VALDN-TLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVAL 138 (158)
Q Consensus 77 GPst~a~vlk~L~~~~~~~~l~Vy-Va~Dg-~vy~ddV~~l~~~~~~~~~~~~~w~plLILIPl 138 (158)
.|..+..+++++++. .+..+. |+++- .-..+.+.++. ...+.|++|.||=
T Consensus 28 ~~ee~~~~l~~l~~~---~d~gII~Ite~~~~~i~e~i~~~~---------~~~~~P~ii~IP~ 79 (100)
T PRK02228 28 DDEKLDEAVEEVLED---DDVGILVMHDDDLEKLPRRLRRTL---------EESVEPTVVTLGG 79 (100)
T ss_pred CHHHHHHHHHHHhhC---CCEEEEEEehhHhHhhHHHHHHHH---------hcCCCCEEEEECC
Confidence 346788999998763 345543 44431 12334444433 2345899999993
No 27
>PLN03052 acetate--CoA ligase; Provisional
Probab=21.14 E-value=53 Score=31.24 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=14.4
Q ss_pred CCCCCCchhHHHHhhh
Q psy10446 51 RRTAPYSIHQIALTGA 66 (158)
Q Consensus 51 ~p~aPFSIH~iv~~G~ 66 (158)
+|+.||++|||+..+.
T Consensus 57 ~~~~~~~~~~~~~~~~ 72 (728)
T PLN03052 57 TPSHPFALHQLMYYSC 72 (728)
T ss_pred CCCCCccHHHHhhhhc
Confidence 4899999999999884
No 28
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=20.81 E-value=1.4e+02 Score=21.12 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHHHhh-----cC-CCCCeEEEEecCCcee-HHHHHHHh
Q psy10446 81 VAQVLRKLAK-----YD-DWSSIVFHVALDNTLV-VNQVKKLC 116 (158)
Q Consensus 81 ~a~vlk~L~~-----~~-~~~~l~VyVa~Dg~vy-~ddV~~l~ 116 (158)
+|.+++.|.+ .. ....+.++...||+.. .+|-.+..
T Consensus 19 ~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L 61 (78)
T cd06539 19 MASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL 61 (78)
T ss_pred EecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC
Confidence 3455555553 22 2347889999999998 45555443
No 29
>KOG3093|consensus
Probab=20.78 E-value=2.5e+02 Score=23.37 Aligned_cols=36 Identities=6% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCCCCeEEEEecCC-ceeHHHHH-HHhh
Q psy10446 82 AQVLRKLAKYDDWSSIVFHVALDN-TLVVNQVK-KLCT 117 (158)
Q Consensus 82 a~vlk~L~~~~~~~~l~VyVa~Dg-~vy~ddV~-~l~~ 117 (158)
+..+..+-.+....++.+|+++++ .|-.++|. +++.
T Consensus 35 ~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq 72 (200)
T KOG3093|consen 35 SKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQ 72 (200)
T ss_pred HHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHh
Confidence 333333444677899999999987 88888776 5554
No 30
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.46 E-value=2.6e+02 Score=20.98 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 39 EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 39 ~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
.+-..||+.+...+..|+|...|.+.-.+.+.. .|++|+=++|+.|.+
T Consensus 17 ~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~----i~~aTVYR~L~~L~e 64 (148)
T PRK09462 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDD 64 (148)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCC----CCHHHHHHHHHHHHH
Confidence 345778999887666788999888887665543 678999999999987
Done!