Query psy10446
Match_columns 158
No_of_seqs 118 out of 308
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:22:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p82_A Cysteine protease ATG4A 100.0 2E-42 6.9E-47 300.2 12.3 133 22-154 87-242 (355)
2 2cy7_A Cysteine protease APG4B 100.0 1.1E-40 3.7E-45 292.8 13.6 132 23-154 92-248 (396)
3 2fu4_A Ferric uptake regulatio 57.2 26 0.00089 22.3 5.4 50 38-91 16-65 (83)
4 3u5c_N S27A, YS15, 40S ribosom 45.7 18 0.00063 27.6 3.5 28 58-85 122-150 (151)
5 2xzm_O RPS13E; ribosome, trans 42.5 19 0.00065 27.6 3.1 28 58-85 124-152 (153)
6 1mzb_A Ferric uptake regulatio 32.5 1.1E+02 0.0039 21.4 5.9 48 39-90 18-65 (136)
7 2heo_A Z-DNA binding protein 1 27.4 66 0.0023 20.1 3.5 42 39-90 10-51 (67)
8 1p6r_A Penicillinase repressor 24.8 58 0.002 20.6 2.9 45 39-90 9-53 (82)
9 1k8r_B Protein kinase BYR2; si 24.7 80 0.0027 22.6 3.7 53 79-138 23-78 (110)
10 2w57_A Ferric uptake regulatio 19.7 1.7E+02 0.006 20.9 4.9 48 39-90 17-64 (150)
No 1
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=100.00 E-value=2e-42 Score=300.23 Aligned_cols=133 Identities=41% Similarity=0.758 Sum_probs=118.2
Q ss_pred ccccCCCCcccCCC-CChHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEE
Q psy10446 22 PSSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFH 100 (158)
Q Consensus 22 ~~~~LGRdWR~~~~-~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~Vy 100 (158)
.++||||+|||... ++++.|.+||+||+|+|+|||||||||++|.++||+||||||||++|++||+|++++.+++++||
T Consensus 87 ~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~ 166 (355)
T 2p82_A 87 ICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVY 166 (355)
T ss_dssp HHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEE
T ss_pred HHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhcccccCceEE
Confidence 36799999999654 45789999999999999999999999999999999999999999999999999999889999999
Q ss_pred EecCCceeHHHHHHHhhhccccC---------------------CCCCCCceeEEEEeecccc-cccchhhhhhcc
Q psy10446 101 VALDNTLVVNQVKKLCTTNKRKL---------------------AKYDDWSSIVFHVALDNTL-VVNQVKKLCTTN 154 (158)
Q Consensus 101 Va~Dg~vy~ddV~~l~~~~~~~~---------------------~~~~~w~plLILIPlRLGl-~in~iy~~c~~~ 154 (158)
|++||++|.+||.++|....... ....+|+|+|||||+|||+ ++|++|.+|++.
T Consensus 167 va~D~~v~~~di~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plLlliplRLGld~in~~Y~~~Lk~ 242 (355)
T 2p82_A 167 VSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKE 242 (355)
T ss_dssp ECBTTEEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEECCSSSCCGGGHHHHHH
T ss_pred EecCCcEeHHHHHHHhhcccccccccccccccccccccccccccccccCCceEEEEEEeecCCCcCCHHHHHHHHH
Confidence 99999999999999997653210 0123699999999999999 799999998864
No 2
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=100.00 E-value=1.1e-40 Score=292.83 Aligned_cols=132 Identities=40% Similarity=0.801 Sum_probs=116.4
Q ss_pred cccCCCCcccCCC-CChHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEEE
Q psy10446 23 SSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHV 101 (158)
Q Consensus 23 ~~~LGRdWR~~~~-~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~VyV 101 (158)
++||||+|||.+. .+++.|.+||+||+|+|+|||||||||++|.++||+||||||||++|++||+|++++.+.+++|||
T Consensus 92 ~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~v 171 (396)
T 2cy7_A 92 CRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHI 171 (396)
T ss_dssp HHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEEE
T ss_pred HHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhcccccCceEEE
Confidence 6899999999754 356789999999999999999999999999999999999999999999999999988899999999
Q ss_pred ecCCceeHHHHHHHhhhcccc-----------------------CCCCCCCceeEEEEeecccc-cccchhhhhhcc
Q psy10446 102 ALDNTLVVNQVKKLCTTNKRK-----------------------LAKYDDWSSIVFHVALDNTL-VVNQVKKLCTTN 154 (158)
Q Consensus 102 a~Dg~vy~ddV~~l~~~~~~~-----------------------~~~~~~w~plLILIPlRLGl-~in~iy~~c~~~ 154 (158)
++|++||.+||.++|...... .+....|+|+|||||+|||+ ++|++|.++++.
T Consensus 172 a~D~~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlliplRLGld~iNp~Y~~~Lk~ 248 (396)
T 2cy7_A 172 AMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKH 248 (396)
T ss_dssp CCTTEEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEEEEECCSSSCCGGGHHHHHH
T ss_pred ecCCceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEEEEeecCCcCCHHHHHHHHH
Confidence 999999999999998743110 01135699999999999999 799999998763
No 3
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=57.22 E-value=26 Score=22.32 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhc
Q psy10446 38 EEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKY 91 (158)
Q Consensus 38 ~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~ 91 (158)
.+.-..||+++...+..|+|+..|++.-.+.+. | .+++|+-+.|+.|.+.
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~--~--is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGE--E--IGLATVYRVLNQFDDA 65 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTC--C--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC--C--CCHhhHHHHHHHHHHC
Confidence 345688999998765368999999998765432 2 4889999999999983
No 4
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=45.67 E-value=18 Score=27.62 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=22.8
Q ss_pred hhHHHHhhhhcCCCCCcc-cChHHHHHHH
Q psy10446 58 IHQIALTGASEGKAVGEW-FGPNTVAQVL 85 (158)
Q Consensus 58 IH~iv~~G~~~gk~pGeW-fGPst~a~vl 85 (158)
||++++.=+.-|+-|-+| |.|++|+..+
T Consensus 122 I~RL~rYYk~~~~LP~~WkY~~~tA~~lv 150 (151)
T 3u5c_N 122 IHRLARYYRTVAVLPPNWKYESATASALV 150 (151)
T ss_dssp HHHHHHHHHHTTSSCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCCCCcCCHHHHHHHh
Confidence 678888877889999999 8888887643
No 5
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=42.50 E-value=19 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=23.0
Q ss_pred hhHHHHhhhhcCCCCCcc-cChHHHHHHH
Q psy10446 58 IHQIALTGASEGKAVGEW-FGPNTVAQVL 85 (158)
Q Consensus 58 IH~iv~~G~~~gk~pGeW-fGPst~a~vl 85 (158)
||++++.=+.-|+-|.+| |.|.+|+..+
T Consensus 124 I~RL~rYYk~~~~LP~~WkY~~~tA~~lv 152 (153)
T 2xzm_O 124 IHRLSRYYKLNQKLPPKWKYNAQTASALV 152 (153)
T ss_dssp HHHHHHHHHHTTSSCTTCCCSSHHHHHHH
T ss_pred HHHHHHHHHhcCcCCCCCcCCHHHHHHHh
Confidence 788888888889999999 7888887643
No 6
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.49 E-value=1.1e+02 Score=21.40 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 39 EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 39 ~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
.+-..||+.+...+..|+|...|.+.-.+.+. =.+++|+-+.|+.|.+
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~----~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGE----DVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCC----CCCHHHHHHHHHHHHH
Confidence 44578999998866468999999888765432 2689999999999996
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=27.36 E-value=66 Score=20.10 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 39 EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 39 ~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
+.-.+||.+|.++ ..|.|...|+++ +|+. .+++.+.|+.|.+
T Consensus 10 ~~~~~IL~~L~~~-~~~~s~~eLA~~---lgls------r~tv~~~l~~L~~ 51 (67)
T 2heo_A 10 NLEQKILQVLSDD-GGPVAIFQLVKK---CQVP------KKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHHHHH-CSCEEHHHHHHH---HCSC------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCcCHHHHHHH---HCcC------HHHHHHHHHHHHH
Confidence 3456799999763 367899888776 6665 7999999999987
No 8
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=24.83 E-value=58 Score=20.57 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 39 EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 39 ~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
.....||....+ ..|.|...|++.-.. .+| ..|+|+...|++|.+
T Consensus 9 ~~e~~vL~~L~~--~~~~t~~ei~~~l~~---~~~--~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 9 DAELEVMKVIWK--HSSINTNEVIKELSK---TST--WSPKTIQTMLLRLIK 53 (82)
T ss_dssp HHHHHHHHHHHT--SSSEEHHHHHHHHHH---HSC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHhh---cCC--ccHHHHHHHHHHHHH
Confidence 455678887766 347888888877432 122 489999999999997
No 9
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=24.72 E-value=80 Score=22.58 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEecCCce---eHHHHHHHhhhccccCCCCCCCceeEEEEee
Q psy10446 79 NTVAQVLRKLAKYDDWSSIVFHVALDNTL---VVNQVKKLCTTNKRKLAKYDDWSSIVFHVAL 138 (158)
Q Consensus 79 st~a~vlk~L~~~~~~~~l~VyVa~Dg~v---y~ddV~~l~~~~~~~~~~~~~w~plLILIPl 138 (158)
.+.|.+||+..- ...+...|+|++.|.+ ..|+..++|..... .-+--|||+|-
T Consensus 23 ~~L~~ALkKF~l-edpskw~Vcvtqssr~~~it~e~f~~icr~~sr------PEReRLIl~~K 78 (110)
T 1k8r_B 23 KTLAIALKKFSL-EDASKFIVCVSQSSRIKLITEEEFKQICFNSSS------PERDRLIIVPK 78 (110)
T ss_dssp HHHHHHHHHHTC-CCTTSEEEEEECSSSEEECCCC-------------------CCCEEEEES
T ss_pred HHHHHHHHHcCC-CChhHeEEEEecCceEEEecHhHHHHHHhCCCC------cchheeEEecC
Confidence 567788887654 3447899999998764 55777888865421 11446777763
No 10
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=19.70 E-value=1.7e+02 Score=20.91 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhh
Q psy10446 39 EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 90 (158)
Q Consensus 39 ~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~ 90 (158)
.+-..||+.+...+..|+|...|.+.-.+.+. =.+++|+=+.|+.|.+
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~----~is~aTVYR~L~~L~e 64 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGE----EIGLATVYRVLNQFDD 64 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC----CCCHHHHHHHHHHHHH
Confidence 44578999998765468999998888765432 2689999999999997
Done!