RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10446
(158 letters)
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase;
1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A
2z0d_A 2z0e_A
Length = 396
Score = 104 bits (261), Expect = 1e-27
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 25 FSGRDWQWNVNSK-EEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQ 83
GRDW+W + ++Y +L F DR+ + YSIHQIA G EGK++G+W+GPNTVAQ
Sbjct: 94 HLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQ 153
Query: 84 VLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFH 135
VL+KLA +D WSS+ H+A+DNT+V+ ++++LC T+ + H
Sbjct: 154 VLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRH 205
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport,
thiol Pro transport, UBL conjugation pathway, structural
genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Length = 355
Score = 98.8 bits (245), Expect = 1e-25
Identities = 48/98 (48%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 23 SSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTV 81
GRDW W + + Y +IL+ F DR+ YSIHQ+A G EGK++GEWFGPNTV
Sbjct: 88 CRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTV 147
Query: 82 AQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
AQVL+KLA +D+W+S+ +V++DNT+V+ +KK+C
Sbjct: 148 AQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVL 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.022
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 27/104 (25%)
Query: 22 PSSFSGRDWQWNVNSK-EEAYLKILKMFEDRRTAPYSIHQIALTGASE--------GKAV 72
+ +W N ++ ++ YL + P S I + + G
Sbjct: 210 TQGLNILEWLENPSNTPDKDYL---------LSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 73 GEWF----GPNTVAQVL---RKLAKYDDWSSIVFHVALDNTLVV 109
GE G +Q L +A+ D W S F V++ + V
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWES--FFVSVRKAITV 302
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.32
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 110 NQVKKLCTTNKRKLAKY-DDWSSIVFHVALDNTL 142
+KKL KL Y DD S+ +A+ T+
Sbjct: 20 QALKKL--QASLKL--YADD-SAPA--LAIKATM 46
Score = 26.8 bits (58), Expect = 2.5
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 145 NQVKKLCTTNKRY 157
+KKL + K Y
Sbjct: 20 QALKKLQASLKLY 32
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 27.2 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 9/30 (30%)
Query: 80 TVAQVLRKLAKYDDWSSIVFHVALDNTLVV 109
T++ V+RKL ++ AL NT+VV
Sbjct: 204 TISNVVRKLEEHG---------ALANTIVV 224
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 25.9 bits (57), Expect = 2.6
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 12 LIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQI 61
L+ K FE + ++ E K+ + + T P Q+
Sbjct: 23 LLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMP----QV 68
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph,
bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia
pachyptila} SCOP: b.122.1.3 c.26.1.5
Length = 396
Score = 26.6 bits (57), Expect = 4.8
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 33 NVNSKEEAYLKILKMFEDRRTAP--YSIHQIALTG------ASEGKAVGEWFGPNTVAQV 84
+ AY K L R P + L+G +G A F VA++
Sbjct: 327 IFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRPEVAKI 386
Query: 85 LRK 87
L
Sbjct: 387 LMD 389
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 26.3 bits (58), Expect = 5.1
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 39 EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEW 75
Y + K + P I + G + K
Sbjct: 364 PLYAESFKKASEHGFKPQIIKETQFPGDDDDKHHHHH 400
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 26.1 bits (58), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 80 TVAQVLRKLAKYDDWSSIVFHVALDNTLVV 109
+A+++ KL +Y A++ T VV
Sbjct: 217 AIARIIDKLRQYG---------AMEYTTVV 237
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 26.1 bits (58), Expect = 7.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 80 TVAQVLRKLAKYDDWSSIVFHVALDNTLVV 109
TVAQ++++L D A+ T+VV
Sbjct: 212 TVAQLVKRLTDAD---------AMKYTIVV 232
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 25.7 bits (57), Expect = 7.5
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 40 AYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTV 81
AY + +F+ + A IH A+ A G V
Sbjct: 104 AYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAV 145
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine
nucleotide exchange factor (GEF), ARF small GTP-binding
proteins; 1.93A {Saccharomyces cerevisiae} SCOP:
a.118.3.1 PDB: 1re0_B*
Length = 230
Score = 25.6 bits (56), Expect = 7.5
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 40 AYL---KILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSS 96
L + D+ A + + K +G +L + + D+S
Sbjct: 43 PMLIEKGFIASDSDKDIAEFLFN---NNNRMNKKTIGLLLCHPDKVSLLNEYIRLFDFSG 99
Query: 97 IVFHVAL 103
+ A+
Sbjct: 100 LRVDEAI 106
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.5 bits (55), Expect = 7.6
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 35/75 (46%)
Query: 6 PKDQDFLIDWKGVTFEP----------------------------SSFSGRDWQWNVNSK 37
K + FL+ + +EP + + W+ SK
Sbjct: 158 QKGKKFLV----IAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
Query: 38 EEAYLKILKMFEDRR 52
Y++ F+
Sbjct: 214 -LYYVQF--FFKQAE 225
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 25.7 bits (57), Expect = 7.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 80 TVAQVLRKLAKYDDWSSIVFHVALDNTLVV 109
TVA V+ L ++D ALD T+VV
Sbjct: 204 TVAGVVETLRQHD---------ALDYTIVV 224
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 25.9 bits (56), Expect = 7.6
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 17/109 (15%)
Query: 28 RDWQWNVNSKEEAYLKILKM-----FEDRRTAPYS-----IHQIALTGASEGKAVGEWF- 76
W++ +K+ +K+ F +R Q+ G +
Sbjct: 433 VQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492
Query: 77 ------GPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
G ++V + R L +V + T V +VK++ T
Sbjct: 493 FCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTV 541
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 25.6 bits (57), Expect = 7.6
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 40 AYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTV 81
Y ++ ++ + +I A+ A+ G N V
Sbjct: 82 TYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAV 123
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 25.7 bits (57), Expect = 7.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 80 TVAQVLRKLAKYDDWSSIVFHVALDNTLVV 109
+VAQV+ + A++ T+VV
Sbjct: 205 SVAQVVTNFQERG---------AMEYTIVV 225
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 25.5 bits (56), Expect = 9.1
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 19 TFEPSSFSGRDWQWNVNSKEEAYLKILKMF 48
+ + +W S E A +K L F
Sbjct: 172 ITQEGAAGYNAAEWFQVSDETAAVKGLLKF 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.415
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,422,252
Number of extensions: 127990
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 26
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)