RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10446
         (158 letters)



>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 334

 Score =  113 bits (284), Expect = 1e-31
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 23  SSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTV 81
               GRDW W     + + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTV
Sbjct: 67  CRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTV 126

Query: 82  AQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNT 141
           AQVL+KLA +D+W+S+  +V++DNT+V+  +KK+C           D        +  + 
Sbjct: 127 AQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSK 186

Query: 142 LVVNQVKK 149
                   
Sbjct: 187 GTSAYCSA 194


>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 350

 Score =  109 bits (274), Expect = 5e-30
 Identities = 48/96 (50%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 25  FSGRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQ 83
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQ
Sbjct: 87  HLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQ 146

Query: 84  VLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           VL+KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct: 147 VLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 182


>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 214

 Score = 27.6 bits (61), Expect = 0.57
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 8/62 (12%)

Query: 34  VNSKEEAYLKILKMFEDRRTAP--YSIHQIALTG------ASEGKAVGEWFGPNTVAQVL 85
           V      +  +       RT P  +   + A++         EGKA         +  +L
Sbjct: 151 VKVGAVFHCPLCGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPIL 210

Query: 86  RK 87
           R+
Sbjct: 211 RR 212


>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 235

 Score = 26.9 bits (59), Expect = 0.90
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 67  SEGKAVGEWFGPNTVAQVLRKLAK 90
            EG+   E F       VL +  K
Sbjct: 207 REGQKPPEGFMAPKAWTVLTEYYK 230


>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
          {Bacteriophage T4 [TaxId: 10665]}
          Length = 87

 Score = 25.8 bits (56), Expect = 1.2
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 12 LIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAP 55
          L+  K   FE  +       ++     E   K+ +  +   T P
Sbjct: 23 LLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMP 66


>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 25.0 bits (54), Expect = 4.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 66  ASEGKAVGEWFGPNTVAQVLRK 87
              G  + EWF    V ++LR+
Sbjct: 197 LRVGGEIPEWFSYPEVVKILRE 218


>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial
          membrane TIMM44 (TIM44), C-terminal domain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 192

 Score = 24.9 bits (54), Expect = 4.5
 Identities = 6/36 (16%), Positives = 13/36 (36%)

Query: 57 SIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 92
          S + + +        VG +F     ++V  +    D
Sbjct: 13 SENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMD 48


>d1nc7a_ b.123.1.1 (A:) Hypothetical protein TM1070 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 116

 Score = 24.3 bits (53), Expect = 5.6
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 36 SKEEAYLKILKMFEDRRTAPYSI 58
            E A ++I  +FED +   + +
Sbjct: 35 GDETAKIRITFLFEDSKPVVHEV 57


>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
           {Sulfur-oxidizing endosymbiont of Riftia pachyptila
           [TaxId: 35843]}
          Length = 223

 Score = 24.4 bits (52), Expect = 7.0
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 8/69 (11%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPY--SIHQIALTG------ASEGKAVGEWFGP 78
           G        +   AY K L      R  P       + L+G        +G A    F  
Sbjct: 148 GAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSR 207

Query: 79  NTVAQVLRK 87
             VA++L  
Sbjct: 208 PEVAKILMD 216


>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 359

 Score = 24.5 bits (53), Expect = 7.2
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 70  KAVGEWFGPNTVAQVLRKLAKYDDWSS 96
           KAV +W+       +   + KY   + 
Sbjct: 146 KAVSDWYNTKDALNLAMAVTKYKQRNG 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 607,804
Number of extensions: 25324
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 14
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)