BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10447
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 31/164 (18%)
Query: 1 MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFL--------KAIGYLIPLMDAEYA 52
MT +H T + ++ DS LW+G G+G A L KA+G +IP +D +
Sbjct: 174 MTTVHAITATQKTVDSPSGKLWRG-----GRGAAQNLIPASTGAAKAVGKVIPELDGKLT 228
Query: 53 NYY----TKEV-MLILIREFQSPD--EEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFF 105
T V +L L + P +++KK+V + + G+ Y +DE++ F
Sbjct: 229 GMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPL--KGILG-YTEDEVVSDDF 285
Query: 106 KNFWNHRMALDRRNYRQLVDTTVEIA----NKVGASEIINRVVD 145
N NH D +L DT V++ N+ G SE RVVD
Sbjct: 286 -NGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYSE---RVVD 325
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 93 AQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENE 152
AQ+ ++IL K +NH AL R Y N+VG ++I+RV++D+ E
Sbjct: 85 AQWTSNKILYDIRKKLYNHLQALSARFYAN---------NQVG--QVISRVINDV----E 129
Query: 153 QYRKMVMESI 162
Q + ++ +
Sbjct: 130 QTKDFILTGL 139
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 128 VEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165
+I +K G + +V DL D +Y++ ESI++T
Sbjct: 176 ADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKET 213
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 128 VEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165
+I +K G + +V DL D +Y++ ESI++T
Sbjct: 157 ADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKET 194
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 65 REFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLV 124
R F PD + L +K+ C G + + + D P N ++++ +D N L
Sbjct: 192 RLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTP----NVFDNKYYIDLVNREGLF 247
Query: 125 DTTVEIANKVGASEIINRVVDDLKDENEQY 154
+ ++ I+ R +D EQ+
Sbjct: 248 VSDQDLFTNAITRPIVERFAQSQQDFFEQF 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,758,606
Number of Sequences: 62578
Number of extensions: 183443
Number of successful extensions: 575
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 12
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)