BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10447
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
Length = 1307
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/155 (90%), Positives = 148/155 (95%)
Query: 10 SIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS 69
IESFDSVLKPLWKGIR HRGKGLAAFLKAIGYLIPLMDAEYANYYT+EVMLILIREFQS
Sbjct: 723 GIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQS 782
Query: 70 PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVE 129
PDEEMKKIVLKVVKQCC TDGVEA YIK EILPPFFK+FW HRMALDRRNYRQLVDTTVE
Sbjct: 783 PDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVE 842
Query: 130 IANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
+ANKVGA+EII+R+VDDLKDE EQYRKMVME+IEK
Sbjct: 843 LANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEK 877
>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1
Length = 1304
Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/155 (90%), Positives = 148/155 (95%)
Query: 10 SIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS 69
IESFDSVLKPLWKGIR HRGKGLAAFLKAIGYLIPLMDAEYANYYT+EVMLILIREFQS
Sbjct: 720 GIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQS 779
Query: 70 PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVE 129
PDEEMKKIVLKVVKQCC TDGVEA YIK EILPPFFK+FW HRMALDRRNYRQLVDTTVE
Sbjct: 780 PDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVE 839
Query: 130 IANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
+ANKVGA+EII+R+VDDLKDE EQYRKMVME+IEK
Sbjct: 840 LANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEK 874
>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3
Length = 1304
Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/155 (90%), Positives = 148/155 (95%)
Query: 10 SIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS 69
IESFDSVLKPLWKGIR HRGKGLAAFLKAIGYLIPLMDAEYANYYT+EVMLILIREFQS
Sbjct: 720 GIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQS 779
Query: 70 PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVE 129
PDEEMKKIVLKVVKQCC TDGVEA YIK EILPPFFK+FW HRMALDRRNYRQLVDTTVE
Sbjct: 780 PDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVE 839
Query: 130 IANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
+ANKVGA+EII+R+VDDLKDE EQYRKMVME+IEK
Sbjct: 840 LANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEK 874
>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=prp10 PE=1 SV=3
Length = 1205
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 128/155 (82%)
Query: 10 SIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS 69
IE+FDSVLKPLW G++ HRGK LAAFLKA G++IPLM+ EYA+++T+ +M IL+REF S
Sbjct: 621 GIEAFDSVLKPLWSGVQRHRGKSLAAFLKATGFIIPLMEPEYASHFTRRIMKILLREFNS 680
Query: 70 PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVE 129
PDEEMKKIVLKVV QC +TDGV +Y++ ++LP FF FW+ RMA DRR+Y+Q+V+TTV
Sbjct: 681 PDEEMKKIVLKVVSQCASTDGVTPEYLRTDVLPEFFHCFWSRRMASDRRSYKQVVETTVV 740
Query: 130 IANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
+A +VG+ +I+ RVV++ KDE+E YRKM E+++K
Sbjct: 741 LAQQVGSRQIVERVVNNFKDESEPYRKMTAETVDK 775
>sp|P49955|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HSH155 PE=1 SV=1
Length = 971
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 118/172 (68%), Gaps = 10/172 (5%)
Query: 4 IHCHTLS----------IESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYAN 53
+ HTLS IE F+ VL+PLWKGIR+HRGK L++FLKA+G +IPLMD EYA
Sbjct: 373 VTAHTLSTLAENSYPYGIEVFNVVLEPLWKGIRSHRGKVLSSFLKAVGSMIPLMDPEYAG 432
Query: 54 YYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRM 113
YYT E M I+ REF SPD+EMKK +L V+++C A + + +++++EI P FF+ FW R+
Sbjct: 433 YYTTEAMRIIRREFDSPDDEMKKTILLVLQKCSAVESITPKFLREEIAPEFFQKFWVRRV 492
Query: 114 ALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165
ALDR + + TTV +A K+G S I++++ L+DE E +R M + ++ +T
Sbjct: 493 ALDRPLNKVVTYTTVTLAKKLGCSYTIDKLLTPLRDEAEPFRTMAVHAVTRT 544
>sp|P06835|BGLS_HANAN Beta-glucosidase OS=Hansenula anomala PE=3 SV=1
Length = 825
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 89 DGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEI 139
DG+ A+ +++I F + WN A+D Y D +E+AN V EI
Sbjct: 478 DGIGARAQQEKISYEFIGDSWNQAAAMDSALY---ADAAIEVANSVAGEEI 525
>sp|P39310|YTFB_ECOLI Uncharacterized protein YtfB OS=Escherichia coli (strain K12)
GN=ytfB PE=4 SV=2
Length = 212
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 29 RGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVL 79
RG +AA + +G+L+P D A T+E L + + Q P EE + L
Sbjct: 33 RGIIIAAIVLVVGFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQL 83
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1
SV=2
Length = 1149
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 2 TDIHCHTLSIESFDSVLKPLWKG------IRTHRGKG--LAAFLKAIGYLIPLMDAEYAN 53
T IH H + E+FD +LKP++KG I T + K L AFLK G + +D+ N
Sbjct: 10 THIHKH-VKDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDS--FN 66
Query: 54 YYTKEVMLILIREFQ------SPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPP 103
Y+ + +I+ Q P+ +K + ++V K+ ++ KD + PP
Sbjct: 67 YFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSS-------TKDYLTPP 115
>sp|Q9W358|RIC8_DROME Synembryn OS=Drosophila melanogaster GN=ric8a PE=1 SV=2
Length = 573
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 50 EYANYYTKEVMLILIR------EFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPP 103
E N + +V+L +R E ++ E+ VL V+ +C +D V Y++ EILPP
Sbjct: 340 EKRNVRSLDVLLRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPP 399
Query: 104 F 104
Sbjct: 400 L 400
>sp|Q54ZM4|C518A_DICDI Probable cytochrome P450 518A1 OS=Dictyostelium discoideum
GN=cyp518A1 PE=3 SV=1
Length = 494
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 31/127 (24%)
Query: 14 FDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANY--YTKEVMLILIREFQSPD 71
F ++ +++G+ +GK L A + YL D NY +TK + ++ F P
Sbjct: 188 FSRRIENIYEGVNEEQGKVLLAIRELFDYL---ADTLIVNYLIFTKPFYFLYLKMFGHPA 244
Query: 72 EEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIA 131
+ +KKI+ K + H ++D N R ++D+ +
Sbjct: 245 DSLKKILTKY--------------------------YLEHSESIDLNNARDVLDSLIIEY 278
Query: 132 NKVGASE 138
KVG E
Sbjct: 279 RKVGGKE 285
>sp|Q29IC2|RIC8_DROPS Synembryn OS=Drosophila pseudoobscura pseudoobscura GN=ric8a PE=3
SV=1
Length = 566
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 65 REFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPF 104
+E ++ E+ VL V+ +C +D V Y++ EILPP
Sbjct: 353 QEAEASSHELLSPVLTVLVKCSRSDRVMRHYLRQEILPPL 392
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 49 AEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCA--TDGVEAQY----IKDEILP 102
A+YANY TK+V L F E + + CC T + A Y IKDE+ P
Sbjct: 925 ADYANYLTKKVFEALRSLFTQAHE-----IQDWLSACCNLITHSLPADYIKEGIKDELTP 979
Query: 103 PFFKNFWNHRMALDRRNYR 121
+ N + RNY+
Sbjct: 980 VVWTTLLNLPIVQPYRNYK 998
>sp|O27158|CAS3_METTH CRISPR-associated nuclease/helicase Cas3 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=cas3 PE=1 SV=1
Length = 830
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 62 ILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYR 121
+++ E Q+ +EEM +++K ++ DG + LPP+F++F LD N+
Sbjct: 416 MILDEIQTYNEEMAAVIIKTLELVNEVDG--NILVMTATLPPYFRSF------LDAMNFE 467
Query: 122 QLVDTTVEIANKVGASEIIN 141
+++A GA +I N
Sbjct: 468 -----VMDVAAIPGAHDIKN 482
>sp|Q1Q9L2|ASSY_PSYCK Argininosuccinate synthase OS=Psychrobacter cryohalolentis (strain
K5) GN=argG PE=3 SV=1
Length = 412
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 92 EAQYIKDEILPPFFKNFWN-HRMALDRRNYRQLVDTTVEIANKV-------GASEIINRV 143
EA ++KDE++P + K +N + + +R + L+D + E N GA ++ R
Sbjct: 305 EAAHLKDELMPRYAKTIYNGYWFSPERMMLQALIDKSQEYVNGTVRVKLYKGAVSVVGRK 364
Query: 144 VDD 146
DD
Sbjct: 365 SDD 367
>sp|Q4FR79|ASSY_PSYA2 Argininosuccinate synthase OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=argG PE=3 SV=1
Length = 412
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 92 EAQYIKDEILPPFFKNFWN-HRMALDRRNYRQLVDTTVEIANKV-------GASEIINRV 143
EA ++KDE++P + K +N + + +R + L+D + E N GA ++ R
Sbjct: 305 EAAHLKDELMPRYAKTIYNGYWFSPERMMLQALIDKSQEYVNGTVRVKLYKGAVSVVGRK 364
Query: 144 VDD 146
DD
Sbjct: 365 SDD 367
>sp|Q6ZS81|WDFY4_HUMAN WD repeat- and FYVE domain-containing protein 4 OS=Homo sapiens
GN=WDFY4 PE=1 SV=3
Length = 3184
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 68 QSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTT 127
Q P+ E+ ++L++V A +KD + PF K F LD YR+ +
Sbjct: 537 QDPERELTCVMLRIVVTLLKGSVRNAVVLKDHGMVPFIKIF------LDDECYREASLSI 590
Query: 128 VEIANKVGASEIINRVVDDL 147
+E + + A E ++ +V L
Sbjct: 591 LEQLSAINAEEYMSIIVGAL 610
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,246,945
Number of Sequences: 539616
Number of extensions: 2292603
Number of successful extensions: 7497
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7484
Number of HSP's gapped (non-prelim): 29
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)