Query psy10447
Match_columns 166
No_of_seqs 95 out of 113
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 18:24:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 97.8 0.00014 4.7E-09 68.4 10.7 151 12-164 82-281 (1230)
2 2bpt_A Importin beta-1 subunit 97.7 0.00038 1.3E-08 61.2 12.2 150 12-164 450-624 (861)
3 4fdd_A Transportin-1; heat rep 97.4 0.00082 2.8E-08 60.7 9.9 149 12-164 438-612 (852)
4 2qk2_A LP04448P; mini spindles 97.3 0.0055 1.9E-07 47.3 12.5 142 13-165 53-203 (242)
5 1u6g_C TIP120 protein, CAND1; 97.3 0.0034 1.2E-07 59.0 13.3 146 12-165 44-202 (1230)
6 1qgr_A Protein (importin beta 97.2 0.002 6.8E-08 56.8 10.1 141 17-165 218-393 (876)
7 1b3u_A Protein (protein phosph 97.2 0.0025 8.6E-08 53.2 10.0 123 31-164 339-467 (588)
8 1b3u_A Protein (protein phosph 97.0 0.0062 2.1E-07 50.8 11.1 121 34-165 420-546 (588)
9 4db6_A Armadillo repeat protei 96.9 0.0053 1.8E-07 45.2 8.7 153 8-165 4-165 (210)
10 4hxt_A De novo protein OR329; 96.9 0.0073 2.5E-07 44.8 9.5 145 17-165 87-239 (252)
11 2bpt_A Importin beta-1 subunit 96.7 0.039 1.3E-06 48.4 13.9 126 32-164 385-526 (861)
12 1ibr_B P95, importin beta-1 su 96.6 0.0099 3.4E-07 48.0 8.8 140 18-165 219-393 (462)
13 2qk2_A LP04448P; mini spindles 96.6 0.072 2.5E-06 40.9 13.1 134 15-164 97-233 (242)
14 4hxt_A De novo protein OR329; 96.5 0.022 7.6E-07 42.2 9.6 144 17-165 45-197 (252)
15 2jdq_A Importin alpha-1 subuni 96.4 0.028 9.5E-07 45.5 10.4 144 17-165 235-388 (450)
16 4db8_A Armadillo-repeat protei 96.3 0.031 1.1E-06 42.1 9.5 144 17-165 55-207 (252)
17 4db6_A Armadillo repeat protei 96.3 0.031 1.1E-06 41.1 9.3 144 17-165 55-207 (210)
18 2vgl_B AP-2 complex subunit be 96.3 0.0061 2.1E-07 53.8 6.3 124 32-165 255-380 (591)
19 1qgr_A Protein (importin beta 96.3 0.079 2.7E-06 46.6 13.2 146 12-164 124-285 (876)
20 4fdd_A Transportin-1; heat rep 96.3 0.044 1.5E-06 49.5 11.8 149 14-164 481-655 (852)
21 1ibr_B P95, importin beta-1 su 96.2 0.11 3.8E-06 41.9 12.5 148 13-164 125-285 (462)
22 1wa5_B Importin alpha subunit; 96.0 0.052 1.8E-06 46.2 10.3 146 16-165 299-455 (530)
23 4b8j_A Importin subunit alpha- 95.9 0.034 1.2E-06 47.1 8.9 145 17-165 287-441 (528)
24 2qk1_A Protein STU2; STU2P, XM 95.8 0.069 2.4E-06 42.8 9.8 149 12-165 56-218 (249)
25 3ltj_A Alpharep-4; protein eng 95.8 0.13 4.3E-06 37.9 10.4 29 58-86 76-104 (201)
26 3ltm_A Alpha-REP4; protein eng 95.7 0.1 3.5E-06 38.6 9.6 28 59-86 82-109 (211)
27 4db8_A Armadillo-repeat protei 95.6 0.088 3E-06 39.6 9.1 142 20-165 16-165 (252)
28 2jdq_A Importin alpha-1 subuni 95.5 0.05 1.7E-06 44.0 8.0 144 17-165 277-441 (450)
29 2vgl_A Adaptor protein complex 95.4 0.13 4.6E-06 46.3 11.2 129 28-164 302-430 (621)
30 3ltm_A Alpha-REP4; protein eng 95.3 0.17 5.9E-06 37.4 9.6 30 58-87 50-79 (211)
31 1wa5_B Importin alpha subunit; 94.9 0.27 9.1E-06 41.8 11.0 145 16-165 173-326 (530)
32 1w63_A Adapter-related protein 94.9 0.1 3.4E-06 46.6 8.6 100 58-165 313-412 (618)
33 3ltj_A Alpharep-4; protein eng 94.8 0.24 8.3E-06 36.3 9.3 62 16-88 14-75 (201)
34 4b8j_A Importin subunit alpha- 94.4 0.11 3.9E-06 43.8 7.3 148 15-165 243-398 (528)
35 1te4_A Conserved protein MTH18 93.6 0.77 2.6E-05 32.2 9.5 87 61-165 45-131 (131)
36 2z6h_A Catenin beta-1, beta-ca 93.4 1.1 3.7E-05 39.4 12.1 147 17-164 306-483 (644)
37 3tpo_A Importin subunit alpha- 93.4 0.89 3E-05 39.2 11.2 145 16-165 293-447 (529)
38 1oyz_A Hypothetical protein YI 93.1 2.2 7.7E-05 32.7 12.2 92 55-165 125-219 (280)
39 2vgl_B AP-2 complex subunit be 92.9 0.66 2.2E-05 40.9 9.9 96 58-165 14-113 (591)
40 2qk1_A Protein STU2; STU2P, XM 92.3 0.99 3.4E-05 36.0 9.4 126 16-147 104-234 (249)
41 1jdh_A Beta-catenin; beta-cate 92.2 2.3 8E-05 35.1 11.7 147 17-164 309-486 (529)
42 1jdh_A Beta-catenin; beta-cate 92.1 0.26 9E-06 40.8 5.9 121 39-165 1-128 (529)
43 1oyz_A Hypothetical protein YI 91.2 3.8 0.00013 31.4 11.4 31 57-87 53-83 (280)
44 1w63_A Adapter-related protein 90.7 1.4 4.6E-05 39.3 9.4 121 31-165 10-134 (618)
45 3ul1_B Importin subunit alpha- 90.1 0.89 3E-05 39.2 7.5 144 17-165 275-428 (510)
46 3fga_B Serine/threonine-protei 90.1 0.39 1.3E-05 42.9 5.4 93 5-104 77-175 (403)
47 2z6h_A Catenin beta-1, beta-ca 89.7 2.5 8.4E-05 37.2 10.2 143 18-164 16-166 (644)
48 1xqr_A HSPBP1 protein; armadil 89.6 0.64 2.2E-05 38.5 6.0 91 16-106 124-216 (296)
49 2z6g_A B-catenin; FULL-length, 88.2 4.3 0.00015 37.3 11.0 147 17-164 442-619 (780)
50 3tpo_A Importin subunit alpha- 86.2 3.9 0.00013 35.1 9.0 148 12-164 247-403 (529)
51 2vgl_A Adaptor protein complex 86.1 4.1 0.00014 36.7 9.5 121 31-165 11-138 (621)
52 2jak_A Serine/threonine-protei 84.2 1.7 5.7E-05 38.7 5.9 94 6-106 123-222 (392)
53 3ul1_B Importin subunit alpha- 82.3 4.8 0.00017 34.6 7.9 146 11-164 227-384 (510)
54 2x19_B Importin-13; nuclear tr 82.0 13 0.00043 33.8 10.9 144 12-164 441-596 (963)
55 2npp_B PP2A, B subunit, serine 78.3 4.3 0.00015 36.6 6.5 93 6-105 111-209 (449)
56 3now_A UNC-45 protein, SD10334 76.9 19 0.00065 34.4 10.8 131 31-165 638-780 (810)
57 2db0_A 253AA long hypothetical 76.5 20 0.00068 30.4 9.6 94 59-165 141-244 (253)
58 4ffb_C Protein STU2; tubulin f 76.4 25 0.00087 27.4 11.0 132 20-163 58-208 (278)
59 2jtt_C Calcyclin-binding prote 75.9 1.4 4.8E-05 27.2 1.9 25 59-83 8-32 (35)
60 2z6g_A B-catenin; FULL-length, 75.9 22 0.00075 32.6 10.6 70 17-87 235-305 (780)
61 2x1g_F Cadmus; transport prote 74.1 53 0.0018 30.0 12.7 143 12-164 455-612 (971)
62 1xqr_A HSPBP1 protein; armadil 74.0 21 0.00071 29.3 9.1 130 32-164 53-193 (296)
63 3m1i_C Exportin-1; heat repeat 69.0 76 0.0026 29.7 13.1 99 31-135 468-572 (1049)
64 4glx_A DNA ligase; inhibitor, 66.8 12 0.0004 34.8 6.6 81 18-114 493-573 (586)
65 1xm9_A Plakophilin 1; armadill 65.4 62 0.0021 27.3 15.1 156 6-165 271-447 (457)
66 1te4_A Conserved protein MTH18 65.2 6.7 0.00023 27.2 3.7 90 57-165 11-100 (131)
67 1zp2_A RNA polymerase II holoe 62.7 12 0.0004 29.4 5.1 69 64-135 18-86 (235)
68 3opb_A SWI5-dependent HO expre 61.7 48 0.0016 31.9 9.9 123 31-163 227-359 (778)
69 2ouw_A Alkylhydroperoxidase AH 59.6 42 0.0014 23.8 7.2 77 43-142 4-90 (138)
70 3l9t_A Putative uncharacterize 57.3 5 0.00017 33.6 2.2 53 107-164 152-204 (240)
71 3now_A UNC-45 protein, SD10334 56.6 19 0.00066 34.4 6.3 119 38-164 269-405 (810)
72 3rgf_B Cyclin-C; protein kinas 56.1 22 0.00074 29.0 5.8 68 66-136 32-101 (285)
73 1dqe_A PBP, pheromone-binding 52.4 22 0.00077 25.9 4.9 75 30-111 45-121 (137)
74 3bwt_A Protein PUF4; pumilio, 51.2 16 0.00055 29.7 4.2 38 126-163 274-311 (333)
75 3nmw_A APC variant protein; AR 50.4 84 0.0029 26.3 8.7 142 17-165 171-332 (354)
76 2wcj_A General odorant-binding 50.3 24 0.00084 26.0 4.8 75 31-112 46-122 (141)
77 1qwv_A PBP, pheromone-binding 49.5 12 0.0004 28.0 2.9 59 31-92 46-106 (142)
78 2i53_A Cyclin K; cell cycle, t 46.8 28 0.00096 27.3 4.9 61 72-135 38-98 (258)
79 1vdy_A Hypothetical protein (R 45.0 26 0.00087 26.9 4.3 37 57-95 48-84 (140)
80 3tjz_B Coatomer subunit gamma; 45.0 33 0.0011 29.5 5.4 96 64-165 31-131 (355)
81 3lgb_A DNA primase large subun 44.8 31 0.001 28.1 4.9 66 12-90 16-89 (194)
82 3onk_A Epsin-3, ENT3; helix, p 44.6 7.2 0.00025 30.2 1.1 43 1-43 32-74 (150)
83 2f31_A Diaphanous protein homo 44.1 1.1E+02 0.0039 23.9 8.6 54 34-90 72-128 (233)
84 2vhb_A Hemoglobin; heme, respi 42.2 23 0.00077 25.4 3.4 50 9-58 88-144 (146)
85 3zrh_A Ubiquitin thioesterase 41.5 4.2 0.00015 37.2 -0.7 40 42-90 372-415 (454)
86 2cwq_A Hypothetical protein TT 41.1 9.4 0.00032 28.1 1.2 58 86-146 33-100 (137)
87 2of3_A ZYG-9; multifunctional 41.0 1.5E+02 0.0052 24.5 9.8 130 22-164 91-233 (266)
88 3tjz_B Coatomer subunit gamma; 40.6 1.7E+02 0.0059 25.0 9.3 94 57-164 67-165 (355)
89 2pk2_A Cyclin-T1, protein TAT; 40.1 40 0.0014 28.7 5.2 61 72-135 35-95 (358)
90 3eg5_B Protein diaphanous homo 38.8 1.8E+02 0.0063 24.8 9.3 53 35-90 139-194 (383)
91 2ivx_A Cyclin-T2; transcriptio 38.4 45 0.0015 26.2 4.9 61 73-136 29-89 (257)
92 3mb3_A PH-interacting protein; 37.4 1.2E+02 0.0039 22.0 9.1 98 7-113 15-123 (135)
93 2x19_B Importin-13; nuclear tr 37.0 1.5E+02 0.005 26.9 8.5 64 14-77 566-636 (963)
94 3nmz_A APC variant protein; pr 36.9 1.4E+02 0.0047 26.2 8.2 142 17-165 287-448 (458)
95 1xm9_A Plakophilin 1; armadill 36.8 78 0.0027 26.7 6.4 101 60-164 4-113 (457)
96 1dqe_A PBP, pheromone-binding 36.7 27 0.00091 25.5 3.1 34 73-112 7-40 (137)
97 1w98_B Cyclin E, G1/S-specific 36.0 86 0.0029 25.4 6.3 92 71-164 46-141 (283)
98 2x9q_A Cyclodipeptide syntheta 35.7 78 0.0027 27.4 6.2 68 21-90 140-212 (289)
99 3jxy_A Alkylpurine DNA glycosy 35.4 71 0.0024 25.1 5.6 48 107-163 144-191 (232)
100 2of3_A ZYG-9; multifunctional 34.2 41 0.0014 28.0 4.2 72 14-90 165-239 (266)
101 3gjx_A Exportin-1; transport, 33.5 1.1E+02 0.0038 30.0 7.6 40 32-71 495-534 (1073)
102 3v71_A PUF (pumilio/FBF) domai 33.5 63 0.0022 27.4 5.4 120 4-132 177-328 (382)
103 4gmo_A Putative uncharacterize 33.4 49 0.0017 29.9 4.9 79 48-165 25-103 (684)
104 3l6x_A Catenin delta-1; cateni 33.3 2.8E+02 0.0096 25.3 10.9 156 6-163 296-472 (584)
105 2wy4_A Single domain haemoglob 33.1 1.2E+02 0.0042 21.1 6.8 76 16-96 7-94 (140)
106 1jkw_A Cyclin H; cell cycle, c 32.9 65 0.0022 26.8 5.2 81 65-148 45-130 (323)
107 2b9r_A Human cyclin B1; cell c 32.3 1.7E+02 0.0057 23.3 7.4 92 69-163 32-127 (269)
108 1uii_A Geminin; human, DNA rep 32.1 60 0.002 23.3 4.2 42 110-161 36-79 (83)
109 1ooh_A Odorant binding protein 31.6 44 0.0015 22.8 3.4 27 70-96 4-30 (126)
110 3d3b_A Protein NUSB, N utiliza 31.5 37 0.0013 24.9 3.1 34 117-150 99-139 (141)
111 1xgw_A Epsin 4; ENTH, enthopro 31.3 15 0.0005 29.3 0.9 43 1-43 55-97 (176)
112 2x1g_F Cadmus; transport prote 30.5 2.9E+02 0.0098 25.2 9.4 66 14-79 582-655 (971)
113 1s0p_A CAP, adenylyl cyclase-a 30.1 99 0.0034 24.5 5.6 63 7-74 53-137 (176)
114 2cch_B Cyclin A2, cyclin-A; co 29.8 1.3E+02 0.0043 23.8 6.2 62 71-135 35-96 (260)
115 3nuf_A PRD-containing transcri 29.2 75 0.0026 24.2 4.5 67 68-134 21-93 (119)
116 3k62_A FEM-3 mRNA-binding fact 29.0 1.5E+02 0.005 25.6 7.0 51 4-61 117-170 (412)
117 3g33_B CCND3 protein; Ser/Thr 27.8 1.3E+02 0.0044 24.8 6.2 60 72-134 68-127 (306)
118 3sgi_A DNA ligase; HET: DNA AM 27.6 13 0.00044 34.9 0.0 83 16-114 508-590 (615)
119 3itu_A CGMP-dependent 3',5'-cy 27.6 2E+02 0.007 24.6 7.6 74 35-108 182-260 (345)
120 1g3n_C V-cyclin; cyclin-depend 27.5 1E+02 0.0034 24.3 5.3 61 71-134 47-107 (257)
121 1dgs_A DNA ligase; AMP complex 27.2 1.1E+02 0.0036 28.9 6.1 82 17-114 487-568 (667)
122 3mvu_A TENA family transcripti 26.8 1.6E+02 0.0055 22.9 6.3 72 6-86 3-85 (226)
123 1zkr_A Major allergen I polype 26.3 47 0.0016 26.3 3.1 18 69-87 30-47 (153)
124 2f2c_A Cyclin homolog, V-cycli 26.3 1.8E+02 0.0063 22.8 6.6 91 71-164 48-142 (254)
125 2w72_C Human hemoglobin A; iro 26.2 1.7E+02 0.006 20.6 6.4 36 17-56 9-44 (141)
126 1wa5_C Importin alpha RE-expor 26.1 1.1E+02 0.0038 28.2 5.9 54 35-88 618-671 (960)
127 3u0r_A Apoptosis inhibitor 5; 26.1 67 0.0023 29.7 4.4 36 69-109 25-60 (507)
128 3l9q_A DNA primase large subun 25.8 45 0.0015 27.1 2.9 31 12-42 13-49 (195)
129 3nmz_A APC variant protein; pr 25.8 3.3E+02 0.011 23.7 10.6 103 59-164 287-405 (458)
130 3nmw_A APC variant protein; AR 25.8 2.9E+02 0.0098 23.0 9.4 104 59-165 171-290 (354)
131 3gvo_A Pumilio 2, pumilio homo 25.2 1.5E+02 0.0051 24.3 6.1 53 3-61 174-226 (351)
132 2y3a_A Phosphatidylinositol-4, 25.1 2.4E+02 0.0081 28.2 8.4 127 19-149 578-750 (1092)
133 4atg_A TAF6; transcription, TF 24.7 1.7E+02 0.0058 23.3 6.1 92 13-115 12-103 (196)
134 1vke_A Carboxymuconolactone de 24.6 24 0.00081 26.2 1.0 49 90-144 31-79 (133)
135 2r8q_A Class I phosphodiestera 24.2 2.6E+02 0.0088 24.0 7.6 73 36-108 203-280 (359)
136 4ffb_C Protein STU2; tubulin f 23.9 71 0.0024 24.8 3.7 72 16-87 139-212 (278)
137 2b6c_A Hypothetical protein EF 23.6 36 0.0012 26.6 2.0 48 107-163 137-184 (220)
138 3s0a_A OBP14; all helical prot 23.4 55 0.0019 22.9 2.7 26 71-96 3-28 (119)
139 4atg_A TAF6; transcription, TF 22.6 1.5E+02 0.0052 23.6 5.5 60 51-111 105-179 (196)
140 1wa5_C Importin alpha RE-expor 22.6 4.5E+02 0.015 24.1 12.0 120 12-135 492-631 (960)
141 3oao_A Uncharacterized protein 22.3 31 0.0011 26.5 1.3 49 22-70 45-95 (147)
142 3out_A Glutamate racemase; str 21.9 41 0.0014 27.5 2.0 29 2-30 39-67 (268)
143 2owo_A DNA ligase; protein-DNA 21.4 1.3E+02 0.0045 28.3 5.5 81 18-114 493-573 (671)
144 3l9t_A Putative uncharacterize 21.2 1.7E+02 0.0057 24.3 5.6 95 49-162 62-163 (240)
145 2w96_A G1/S-specific cyclin-D1 21.1 1.5E+02 0.0052 23.5 5.2 63 70-135 52-114 (271)
146 3q8i_A Odorant binding protein 21.1 97 0.0033 21.3 3.6 26 71-96 3-28 (124)
147 1lsh_A Lipovitellin (LV-1N, LV 21.1 1.8E+02 0.0062 28.0 6.5 63 99-165 436-505 (1056)
148 2gm8_A TENA homolog/THI-4 thia 20.7 2.9E+02 0.0098 21.2 6.6 75 14-97 15-109 (221)
149 3v71_A PUF (pumilio/FBF) domai 20.7 98 0.0034 26.2 4.2 61 81-145 233-294 (382)
150 3ljw_A Protein polybromo-1; al 20.6 2.3E+02 0.0079 20.0 7.1 93 11-109 6-111 (120)
151 1wlq_A Geminin; coiled-coil; 2 20.5 90 0.0031 22.4 3.3 42 110-161 28-71 (83)
152 3bey_A Conserved protein O2701 20.5 1.1E+02 0.0037 20.3 3.6 41 102-146 20-60 (96)
153 3tt9_A Plakophilin-2; cell adh 20.4 2.1E+02 0.0071 22.8 5.9 27 60-86 10-38 (233)
154 3grl_A General vesicular trans 20.3 5.2E+02 0.018 24.4 9.3 108 52-163 58-191 (651)
155 1zce_A Hypothetical protein AT 20.3 8.1 0.00028 30.5 -2.5 30 8-40 13-44 (155)
156 3hjl_A Flagellar motor switch 20.0 3.3E+02 0.011 23.1 7.4 62 22-97 110-176 (329)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.77 E-value=0.00014 Score=68.36 Aligned_cols=151 Identities=12% Similarity=0.157 Sum_probs=105.9
Q ss_pred hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChh-----HHhhhHHHHHHHHHhhcC-CCcHHHHHHHHHHHHhh
Q psy10447 12 ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAE-----YANYYTKEVMLILIREFQ-SPDEEMKKIVLKVVKQC 85 (166)
Q Consensus 12 EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~e-----yA~yYt~evm~il~rEF~-SPDeEMKkiVLkVv~qc 85 (166)
+..+.++..||.++.......-.+-..|+|.|...+.++ +...|..++++.|.+-++ +++.+.|...|.++.++
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 567788999999987655544445567888888888765 467788999999999999 69999999999999998
Q ss_pred hcc--cCcchhhHhhhhchHHHHHHH-----HHHhhhh------------------------------hhhhhHHHHHHH
Q psy10447 86 CAT--DGVEAQYIKDEILPPFFKNFW-----NHRMALD------------------------------RRNYRQLVDTTV 128 (166)
Q Consensus 86 ~~t--~gv~~~yir~~i~~~FF~~FW-----~rR~AlD------------------------------r~~~~~vv~TTv 128 (166)
+.. +.+.+ |+ +++++.++..++ +|+.|.. ....+..+++-.
T Consensus 162 ~~~~~~~l~~-~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 162 LSRQGGLLVN-FH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHHTCSSCTT-TH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHHhHhHHHH-HH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 863 44665 54 778888887765 3443320 011223445555
Q ss_pred HHHHhhCH------HHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 129 EIANKVGA------SEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 129 ~lA~Kvg~------~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
.|+..+|. .+++..++..+.|+++..|..+++++..
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 281 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 56654442 4567777777778888888888777654
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.72 E-value=0.00038 Score=61.17 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=106.9
Q ss_pred hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCC---hhHHhhhHHHHHHHHHhhcCCCc--HHHHHHHHHHHHhhh
Q psy10447 12 ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMD---AEYANYYTKEVMLILIREFQSPD--EEMKKIVLKVVKQCC 86 (166)
Q Consensus 12 EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD---~eyA~yYt~evm~il~rEF~SPD--eEMKkiVLkVv~qc~ 86 (166)
+.++.++.+|++++... .+.-.+-.+|++.++..++ ++.-.-|..++++.|.+-++++| ++.|..+++.+.+++
T Consensus 450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 46899999999999765 5666667778888877665 35455677999999999998766 789999999999998
Q ss_pred cccCcc-hhhHhhhhchHHHHHHHHHHhhh--------hh----hhhhHHHHHHHHHHHhhCH------HHHHHHhhccc
Q psy10447 87 ATDGVE-AQYIKDEILPPFFKNFWNHRMAL--------DR----RNYRQLVDTTVEIANKVGA------SEIINRVVDDL 147 (166)
Q Consensus 87 ~t~gv~-~~yir~~i~~~FF~~FW~rR~Al--------Dr----~~~~~vv~TTv~lA~Kvg~------~~il~~iv~~l 147 (166)
...|-. ..|+ +.++|.+++. |.+.+.+ |+ .....+.++-..+++.+|. ..++..++.-+
T Consensus 529 ~~~~~~~~~~~-~~l~~~l~~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 529 EYATDTVAETS-ASISTFVMDK-LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL 606 (861)
T ss_dssp HHCCGGGHHHH-HHHHHHHHHH-HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH
T ss_pred HHcchhhHHHH-HHHHHHHHHH-HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 887743 3454 5688877765 4443221 21 1223556777778887774 45667777778
Q ss_pred ccchH-HHHHHHHHHHhh
Q psy10447 148 KDENE-QYRKMVMESIEK 164 (166)
Q Consensus 148 KDesE-~~R~M~~eti~k 164 (166)
++.+. ..|.-++.++..
T Consensus 607 ~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 607 EKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HSTTGGGTHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHH
Confidence 77766 788887777654
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.39 E-value=0.00082 Score=60.74 Aligned_cols=149 Identities=15% Similarity=0.259 Sum_probs=105.7
Q ss_pred hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccC-
Q psy10447 12 ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDG- 90 (166)
Q Consensus 12 EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~g- 90 (166)
..+++++.+|.+++...-.+.-.+-..|++.+....+++-.. |..+++..|..-+++++.+...+++..+...+..-|
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhh
Confidence 457889999999887555566667778888887777666555 558999999999999998888887777776654333
Q ss_pred --cchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHH------HHHHHhhcccc--------------
Q psy10447 91 --VEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGAS------EIINRVVDDLK-------------- 148 (166)
Q Consensus 91 --v~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~------~il~~iv~~lK-------------- 148 (166)
..++|+ +.++|.+++. |+.-...|+.. +.++++...+++.+|.. .++.+++.-++
T Consensus 517 ~~~~~~~~-~~l~p~l~~~-~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~ 593 (852)
T 4fdd_A 517 HLNKPEYI-QMLMPPLIQK-WNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 593 (852)
T ss_dssp GGCCHHHH-HHHHHHHHHH-HHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccHHHH-HHHHHHHHHH-HHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 346786 5888888877 87766666654 57889999999998852 33333333322
Q ss_pred ---cchHHHHHHHHHHHhh
Q psy10447 149 ---DENEQYRKMVMESIEK 164 (166)
Q Consensus 149 ---DesE~~R~M~~eti~k 164 (166)
.+...+|.-+++++..
T Consensus 594 ~~~~~d~~~~~~~l~~l~~ 612 (852)
T 4fdd_A 594 QYEAPDKDFMIVALDLLSG 612 (852)
T ss_dssp TSCCCCTHHHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 2345688877777654
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.30 E-value=0.0055 Score=47.25 Aligned_cols=142 Identities=11% Similarity=0.175 Sum_probs=100.9
Q ss_pred hhhhhhHHHHHHH-HhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCc
Q psy10447 13 SFDSVLKPLWKGI-RTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGV 91 (166)
Q Consensus 13 sFd~VL~plW~Gi-r~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv 91 (166)
.+..++.-|=+.+ +....++-.+-++|+|.+..-+.++... |...+++.|..-+.+++...|......+..|+.+-++
T Consensus 53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~ 131 (242)
T 2qk2_A 53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131 (242)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH
Confidence 3566777777777 4666777777889999998777766644 8899999999999999999999999999999886542
Q ss_pred chhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC--------HHHHHHHhhcccccchHHHHHHHHHHHh
Q psy10447 92 EAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG--------ASEIINRVVDDLKDENEQYRKMVMESIE 163 (166)
Q Consensus 92 ~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg--------~~~il~~iv~~lKDesE~~R~M~~eti~ 163 (166)
+.++|.++... ..+ +.+.-..++..--.++...| ...++..|+.-|.|.+..-|..+.+++.
T Consensus 132 ------~~ll~~l~~~l-~~~---~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 132 ------EAQQESIVESL-SNK---NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp ------HHHHHHHHHHT-TCS---CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHH-cCC---ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 35666665432 111 11122222233333333332 2478899999999999999999999987
Q ss_pred hc
Q psy10447 164 KT 165 (166)
Q Consensus 164 kv 165 (166)
.+
T Consensus 202 ~l 203 (242)
T 2qk2_A 202 TL 203 (242)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.30 E-value=0.0034 Score=59.00 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=106.2
Q ss_pred hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCc
Q psy10447 12 ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGV 91 (166)
Q Consensus 12 EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv 91 (166)
+.++.++.+|++++...-.+.=.+=++|+|.+..-..+ .+-.+++..|...+.+|+++.|......+.+++..-+-
T Consensus 44 ~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~----~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 44 DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 56889999999999644444444457788888877655 46678999999999999999999999999988865543
Q ss_pred c-------hhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC------HHHHHHHhhcccccchHHHHHHH
Q psy10447 92 E-------AQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG------ASEIINRVVDDLKDENEQYRKMV 158 (166)
Q Consensus 92 ~-------~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg------~~~il~~iv~~lKDesE~~R~M~ 158 (166)
. ..| ..+++|..++.+=. .-|-......+++-.+++...| ...++..++..|.|++...|+.+
T Consensus 120 ~~~~~~~~~~~-~~~llp~L~~~l~~---~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a 195 (1230)
T 1u6g_C 120 ASSGSALAANV-CKKITGRLTSAIAK---QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRT 195 (1230)
T ss_dssp ----CCTHHHH-HHHHHHHHHHHHSC---CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHH
T ss_pred cccccchHHHH-HHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 2 335 57889888876521 0111222334455555665545 36799999999999999999999
Q ss_pred HHHHhhc
Q psy10447 159 MESIEKT 165 (166)
Q Consensus 159 ~eti~kv 165 (166)
+.++..+
T Consensus 196 ~~al~~l 202 (1230)
T 1u6g_C 196 IIALGHL 202 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.21 E-value=0.002 Score=56.76 Aligned_cols=141 Identities=14% Similarity=0.237 Sum_probs=92.3
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc-------
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD------- 89 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~------- 89 (166)
++..+...+.....+.-.+.++|++.++.........|....++..+...+.++|++.+...+..+..++...
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 297 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 5555555554444555566778888777544333344444489999999999999999999999988887642
Q ss_pred ------C-----cchhhHh---hhhchHHHHHH-----------HHHHhhhhhhhhhHHHHHHHHHHHhhC---HHHHHH
Q psy10447 90 ------G-----VEAQYIK---DEILPPFFKNF-----------WNHRMALDRRNYRQLVDTTVEIANKVG---ASEIIN 141 (166)
Q Consensus 90 ------g-----v~~~yir---~~i~~~FF~~F-----------W~rR~AlDr~~~~~vv~TTv~lA~Kvg---~~~il~ 141 (166)
+ ...+|.+ +.++|..++.. |+.|.|. ..+.-.|++..| ...++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a--------~~~l~~l~~~~~~~~~~~~l~ 369 (876)
T 1qgr_A 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA--------GVCLMLLATCCEDDIVPHVLP 369 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH--------HHHHHHHHHHHGGGGHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHH--------HHHHHHHHHHCcHhhHHHHHH
Confidence 1 1123332 56777776643 5444322 234444555555 445666
Q ss_pred HhhcccccchHHHHHHHHHHHhhc
Q psy10447 142 RVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 142 ~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.+...++|++...|..++.++..+
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i 393 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCI 393 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHccCCChHHHHHHHHHHHHH
Confidence 777788999999999999988654
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.18 E-value=0.0025 Score=53.18 Aligned_cols=123 Identities=13% Similarity=0.206 Sum_probs=79.4
Q ss_pred chHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHH
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWN 110 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~ 110 (166)
+.-.+..+|+|.+.+.+..+. ....+++.+..-+++++++.|..++..+.+++..-|.. ...+.++|.+.+..
T Consensus 339 ~vR~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~-- 411 (588)
T 1b3u_A 339 HVKSALASVIMGLSPILGKDN---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELA-- 411 (588)
T ss_dssp HHHHHHHTTGGGGHHHHCHHH---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhHhH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHh--
Confidence 444567888888888876543 34678888888899999999999988887776654432 23456666655421
Q ss_pred HHhhhhh--hhhhHHHHHHHHHHHhhCHH----HHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 111 HRMALDR--RNYRQLVDTTVEIANKVGAS----EIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 111 rR~AlDr--~~~~~vv~TTv~lA~Kvg~~----~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
.|+ +.....+++...+++.+|.. .++..++..|+|++...|..+++++..
T Consensus 412 ----~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 412 ----EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp ----TCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred ----cCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 111 12223345555566666653 556666666777777777777776654
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.05 E-value=0.0062 Score=50.80 Aligned_cols=121 Identities=12% Similarity=0.158 Sum_probs=77.5
Q ss_pred HHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHh
Q psy10447 34 AAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRM 113 (166)
Q Consensus 34 AaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~ 113 (166)
.+.+.++|.+...+.++ ++...+++.+.+-+++++.+.|...+..+.+++..-| ++...+.++|...+ +.
T Consensus 420 ~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~llp~l~~-~~---- 489 (588)
T 1b3u_A 420 LAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG--KEWAHATIIPKVLA-MS---- 489 (588)
T ss_dssp HHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHTHHHHHH-TT----
T ss_pred HHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHH-Hh----
Confidence 34456666655444333 3456789999999999999999999999988876644 33335667765432 11
Q ss_pred hhhh--hhhhHHHHHHHHHHHhhCHH----HHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 114 ALDR--RNYRQLVDTTVEIANKVGAS----EIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 114 AlDr--~~~~~vv~TTv~lA~Kvg~~----~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.|. +.-...+++...|+..+|.. .++.-++..++|++..-|.-++.++.++
T Consensus 490 -~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 546 (588)
T 1b3u_A 490 -GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp -TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHH
Confidence 111 11112335555566666643 5666677778888888998888887654
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.93 E-value=0.0053 Score=45.23 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=91.8
Q ss_pred CcchhhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhH-HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhh
Q psy10447 8 TLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEY-ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCC 86 (166)
Q Consensus 8 PYGIEsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~ey-A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~ 86 (166)
+|+-...+.+-.+|..-++..--.....-+.+++.+.-- +++. .......+++.|++-.+++|++.+...+..+.+++
T Consensus 4 ~~~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp ---------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 344555566666666666665556666677888887422 3443 34444568889999999999999999999999998
Q ss_pred c-ccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------hhCHHHHHHHhhcccccchHHHHHHH
Q psy10447 87 A-TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN-------KVGASEIINRVVDDLKDENEQYRKMV 158 (166)
Q Consensus 87 ~-t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~-------Kvg~~~il~~iv~~lKDesE~~R~M~ 158 (166)
. .+......+....+|...+..-.. |.........+--.|+. .+--...+..|+..|+++++..|+.+
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 158 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHH
Confidence 5 333333333455666665543111 22222222223233331 12223468888999999999999999
Q ss_pred HHHHhhc
Q psy10447 159 MESIEKT 165 (166)
Q Consensus 159 ~eti~kv 165 (166)
+.++..+
T Consensus 159 ~~aL~~l 165 (210)
T 4db6_A 159 LWALSNI 165 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.93 E-value=0.0073 Score=44.83 Aligned_cols=145 Identities=11% Similarity=0.089 Sum_probs=93.9
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc-Ccchhh
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD-GVEAQY 95 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~-gv~~~y 95 (166)
++.+|..-++..-......-+.|++.+..--+..........+++.|++-..++|++.++..+..+.+++... +.....
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 166 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 166 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4666666666655666777788888886532222233444568899999999999999999999999998743 222333
Q ss_pred HhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------hhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 96 IKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN-------KVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 96 ir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~-------Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
+...++|...+-.-. .|.........+-..|+. .+.-..++..|+.-++++++..|+-++.++..+
T Consensus 167 ~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 167 VDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 445566665554321 122222233333333332 222234678888889999999999999998764
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.72 E-value=0.039 Score=48.43 Aligned_cols=126 Identities=10% Similarity=0.155 Sum_probs=85.4
Q ss_pred hHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCc---chhhHhhhhchHHHHHH
Q psy10447 32 GLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGV---EAQYIKDEILPPFFKNF 108 (166)
Q Consensus 32 ~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv---~~~yir~~i~~~FF~~F 108 (166)
.-.+-+.|+|.|.--..++.-.-|...+++.|.+-+++|+...|...+..+.+.+..-+- ..+| -+.++|..++.+
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l 463 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHh
Confidence 344557889999866555554556678999999999999999999999988887765331 3455 467788777765
Q ss_pred HHHHhhhhh-hhhhHHHHHHHHHHHhhC----------HHHHHHHhhcccc--cchHHHHHHHHHHHhh
Q psy10447 109 WNHRMALDR-RNYRQLVDTTVEIANKVG----------ASEIINRVVDDLK--DENEQYRKMVMESIEK 164 (166)
Q Consensus 109 W~rR~AlDr-~~~~~vv~TTv~lA~Kvg----------~~~il~~iv~~lK--DesE~~R~M~~eti~k 164 (166)
.|. +.......+-..+++..| ...++..++.-++ |.++..|..+++++..
T Consensus 464 ------~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 464 ------QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp ------TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred ------ccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 121 111122233334555444 2567888888887 5557899999988864
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.62 E-value=0.0099 Score=48.00 Aligned_cols=140 Identities=13% Similarity=0.206 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc--------
Q psy10447 18 LKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD-------- 89 (166)
Q Consensus 18 L~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~-------- 89 (166)
+..|-..+...-...-.+-++|++.+..........|....+++.+..-+++++++.+...+..+..++...
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 298 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444443333222344455677777776543322233333278888888888999999999999888887653
Q ss_pred ----------CcchhhHh---hhhchHHHHHH-----------HHHHhhhhhhhhhHHHHHHHHHHHhhC---HHHHHHH
Q psy10447 90 ----------GVEAQYIK---DEILPPFFKNF-----------WNHRMALDRRNYRQLVDTTVEIANKVG---ASEIINR 142 (166)
Q Consensus 90 ----------gv~~~yir---~~i~~~FF~~F-----------W~rR~AlDr~~~~~vv~TTv~lA~Kvg---~~~il~~ 142 (166)
....++++ ..++|..++.+ |+.|. ....+--.|+..+| ...++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~--------~a~~~L~~l~~~~~~~~~~~~~~~ 370 (462)
T 1ibr_B 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK--------AAGVCLMLLATCCEDDIVPHVLPF 370 (462)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH--------HHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH--------HHHHHHHHHHHhccHHHHHHHHHH
Confidence 12222332 56677666554 43332 22344455666666 2345566
Q ss_pred hhcccccchHHHHHHHHHHHhhc
Q psy10447 143 VVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 143 iv~~lKDesE~~R~M~~eti~kv 165 (166)
+...++|++...|.-++.++..+
T Consensus 371 l~~~l~~~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 371 IKEHIKNPDWRYRDAAVMAFGCI 393 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCChHHHHHHHHHHHHH
Confidence 66788999999999999998764
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.57 E-value=0.072 Score=40.92 Aligned_cols=134 Identities=9% Similarity=0.146 Sum_probs=92.6
Q ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccC---c
Q psy10447 15 DSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDG---V 91 (166)
Q Consensus 15 d~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~g---v 91 (166)
+.++.+||+.++...-..=.+-..|+..++.-+. ...+++.|..-+++++...|..++..+..|..+-+ .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 5678888888776554454555555555555432 36799999999999999999999999999877643 4
Q ss_pred chhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 92 EAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 92 ~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
...|+ ..++|...+..|.+ +......-.++...|+..+|. +.++..++.| .+.-++.+-+.+++
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~----~~~VR~~A~~~l~~l~~~vg~-~~~~~~l~~L---~~~~~~~i~~~~~~ 233 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEP----DPTVRDSSAEALGTLIKLMGD-KAVTPLLADV---DPLKMAKIKECQEK 233 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSS----CHHHHHHHHHHHHHHHHHHCH-HHHGGGGTTS---CHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHcCH-HHHHHHHHhc---CHHHHHHHHHHHHH
Confidence 56776 48898888877632 123334556788889999994 5566666777 33444455555544
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.52 E-value=0.022 Score=42.20 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=90.4
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhH-HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhc-ccCcchh
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEY-ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCA-TDGVEAQ 94 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~ey-A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~-t~gv~~~ 94 (166)
++.+|-+-++..-......-+.|++.|..- +++. ........++.|.+-.+++|++.+...+.++.+++. ++.....
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 123 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666665555666667778877542 2443 333444688999999999999999999999999994 3333333
Q ss_pred hHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------hhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 95 YIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN-------KVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 95 yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~-------Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
-+....+|...+-.= ..|.........+-..|+. .+....++..|+..|+++++..|.-++.++..+
T Consensus 124 ~~~~~~i~~L~~~l~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 124 IVDAGGVEVLVKLLT----STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp HHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 333345555443321 0111222222233333322 222344788889999999999999999998754
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.44 E-value=0.028 Score=45.49 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=91.1
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHh-hhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhc-ccCcchh
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYAN-YYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCA-TDGVEAQ 94 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~-yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~-t~gv~~~ 94 (166)
++.+|-.-++..-.....+-+.|+|.|.-- +++... .....+++.|.+-.++|+++.|+..+..+.+++. ++.....
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 313 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT 313 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555665555544445566677888887542 222222 2223588899999999999999999999999885 2222233
Q ss_pred hHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh--------hCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 95 YIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK--------VGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 95 yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K--------vg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.+...++|.+.+..-. .|....+....+-..|+.. +-...++..|+.-|+|++...|..+++++..+
T Consensus 314 ~~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 314 VIDANIFPALISILQT----AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388 (450)
T ss_dssp HHHTTHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3445777777665532 1222333333344444432 11234778888899999999999999998753
No 16
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.33 E-value=0.031 Score=42.11 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=87.3
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhH-HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcc-hh
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEY-ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVE-AQ 94 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~ey-A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~-~~ 94 (166)
++.+|.+-++..-......-+.|+|.|.-- +++. ........++.|++-.+++|++.++..+..+.+++...... ..
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 344455544444334444455556655422 2332 22223347889999999999999999999999998776655 33
Q ss_pred hHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------hhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 95 YIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN-------KVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 95 yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~-------Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.+...++|...+-.=. -|.......+.+-..|+. .+.-..++..|+.-|+++++..|..++.++..+
T Consensus 134 ~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 134 VIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207 (252)
T ss_dssp HHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4445566665544310 122222333333333332 112245678889999999999999999988754
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.32 E-value=0.031 Score=41.05 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=87.5
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhH-HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcc-hh
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEY-ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVE-AQ 94 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~ey-A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~-~~ 94 (166)
++.+|-+-++..--.....-+.|+|.|.-- +++. ........++.|++-.+++|++.++..+.++.+++....-. ..
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555544445555667777776432 3333 33444557889999999999999999999999998533221 22
Q ss_pred hHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh-------hCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 95 YIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK-------VGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 95 yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K-------vg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.+....+|...+-.= ..|.......+.+-..|+.. +--...++.|+.-++++++..|+.+..++.++
T Consensus 134 ~~~~~~i~~L~~ll~----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 134 VIDAGALPALVQLLS----SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 223445555544320 01222333333333334331 21224677788888899999999999999764
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.30 E-value=0.0061 Score=53.82 Aligned_cols=124 Identities=13% Similarity=0.252 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhhcccC--ChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHH
Q psy10447 32 GLAAFLKAIGYLIPLM--DAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFW 109 (166)
Q Consensus 32 ~LAaFLKaiG~IIPLM--D~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW 109 (166)
++-+..+|++.+.|-+ +|+...-....+...|+ ...++|.+.|.++|+.+.+.+... |+.+.. .+..||.
T Consensus 255 V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~~---p~~~~~-~~~~~~~--- 326 (591)
T 2vgl_B 255 VVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQKR---PEILKQ-EIKVFFV--- 326 (591)
T ss_dssp HHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHHC---CSTTTT-CTTTTSC---
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHhC---hHHHHH-HHHhhee---
Confidence 4556677777777766 55554434445555555 456799999999999998887652 332221 1223431
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 110 NHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 110 ~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
...-|...-+.-.++...+++.-++..|+..|..+++|.+..||+.++.+|.++
T Consensus 327 --~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~l 380 (591)
T 2vgl_B 327 --KYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRC 380 (591)
T ss_dssp --CTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred --ccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111111122333456666778888889999999999999999999999998653
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.29 E-value=0.079 Score=46.62 Aligned_cols=146 Identities=13% Similarity=0.181 Sum_probs=97.8
Q ss_pred hhhhhhhHHHHHHHHhh--hcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhhhc
Q psy10447 12 ESFDSVLKPLWKGIRTH--RGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSP--DEEMKKIVLKVVKQCCA 87 (166)
Q Consensus 12 EsFd~VL~plW~Gir~h--RGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SP--DeEMKkiVLkVv~qc~~ 87 (166)
+.+..++..|-..+... .......-|+++|.+..-.+++.-.-|...+++.+.+-++++ +.+.|...++.+..++.
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45666777777777654 344456678999999887777777788899999999999988 68999999999998875
Q ss_pred ccCcchhh----HhhhhchHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHhhCH------H-HHHHHhhcccccchHHHH
Q psy10447 88 TDGVEAQY----IKDEILPPFFKNFWNHRMAL-DRRNYRQLVDTTVEIANKVGA------S-EIINRVVDDLKDENEQYR 155 (166)
Q Consensus 88 t~gv~~~y----ir~~i~~~FF~~FW~rR~Al-Dr~~~~~vv~TTv~lA~Kvg~------~-~il~~iv~~lKDesE~~R 155 (166)
. +.... .++.+++..++ .... |-+......+.-..++...+. . .+++-++..++|+++..|
T Consensus 204 ~--~~~~~~~~~~~~~il~~l~~-----~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 276 (876)
T 1qgr_A 204 F--TKANFDKESERHFIMQVVCE-----ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA 276 (876)
T ss_dssp G--CHHHHTSHHHHHHHHHHHHH-----HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHH
T ss_pred H--HHHHHHhHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3 22211 11223333322 1111 222334455666666665442 2 677777777899999999
Q ss_pred HHHHHHHhh
Q psy10447 156 KMVMESIEK 164 (166)
Q Consensus 156 ~M~~eti~k 164 (166)
..+++.+..
T Consensus 277 ~~al~~l~~ 285 (876)
T 1qgr_A 277 LQGIEFWSN 285 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 20
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.28 E-value=0.044 Score=49.48 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=101.1
Q ss_pred hhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHH-hhhHHHHHHHHH---hhcCCCcHHHHHHHHHHHHhhhccc
Q psy10447 14 FDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYA-NYYTKEVMLILI---REFQSPDEEMKKIVLKVVKQCCATD 89 (166)
Q Consensus 14 Fd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA-~yYt~evm~il~---rEF~SPDeEMKkiVLkVv~qc~~t~ 89 (166)
++.++..|-..++++..+.+...+.|+|.|+..+.+... .-|...+|+.|. ....++|.+.+ .++..+...+.+-
T Consensus 481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL 559 (852)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHH
Confidence 577888888888888888888899999999877754331 124568999888 45667778875 6777777666654
Q ss_pred Ccc-hhhHhhhhchH---HHHHHHHHHhhh----------hhhhhhHHHHHHHHHHHhhCHH--------HHHHHhhccc
Q psy10447 90 GVE-AQYIKDEILPP---FFKNFWNHRMAL----------DRRNYRQLVDTTVEIANKVGAS--------EIINRVVDDL 147 (166)
Q Consensus 90 gv~-~~yir~~i~~~---FF~~FW~rR~Al----------Dr~~~~~vv~TTv~lA~Kvg~~--------~il~~iv~~l 147 (166)
|.. ..|+ ..+++. -++.+|...... |+......+++.-.|++++|.. .++.-++.-+
T Consensus 560 g~~~~~~~-~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l 638 (852)
T 4fdd_A 560 QSGFLPYC-EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM 638 (852)
T ss_dssp GGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHT
T ss_pred hHhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHh
Confidence 431 1232 233332 234455443321 4444444557777889988853 4677788889
Q ss_pred ccchHHHHHHHHHHHhh
Q psy10447 148 KDENEQYRKMVMESIEK 164 (166)
Q Consensus 148 KDesE~~R~M~~eti~k 164 (166)
.|++...|.-+..++..
T Consensus 639 ~~~~~~vr~~a~~~l~~ 655 (852)
T 4fdd_A 639 QDKMPEVRQSSFALLGD 655 (852)
T ss_dssp TCSSHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHH
Confidence 99999999998888764
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.18 E-value=0.11 Score=41.85 Aligned_cols=148 Identities=12% Similarity=0.160 Sum_probs=92.5
Q ss_pred hhhhhhHHHHHHHHhh--hcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhhhcc
Q psy10447 13 SFDSVLKPLWKGIRTH--RGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSP--DEEMKKIVLKVVKQCCAT 88 (166)
Q Consensus 13 sFd~VL~plW~Gir~h--RGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SP--DeEMKkiVLkVv~qc~~t 88 (166)
.+..++..|-..+... --....+-|.++|.+.--..++.-.-|...+++.+..-++++ +.++|+..++.+.+|...
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455666677666553 223344567778877655545555666778999999999998 799999999999987631
Q ss_pred c--CcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCH------H-HHHHHhhcccccchHHHHHHHH
Q psy10447 89 D--GVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGA------S-EIINRVVDDLKDENEQYRKMVM 159 (166)
Q Consensus 89 ~--gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~------~-~il~~iv~~lKDesE~~R~M~~ 159 (166)
- .....-.++.+++..++. -...|-...+.+.++-..++.+.+. . .+++-++..++|+++..|..++
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~----~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~ 280 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEA----TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 280 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHH----TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 0 011110111222222210 0111333344566777777766543 2 6777778888999999999999
Q ss_pred HHHhh
Q psy10447 160 ESIEK 164 (166)
Q Consensus 160 eti~k 164 (166)
+.+..
T Consensus 281 ~~l~~ 285 (462)
T 1ibr_B 281 EFWSN 285 (462)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.99 E-value=0.052 Score=46.16 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcc-cCcchh
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT-DGVEAQ 94 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t-~gv~~~ 94 (166)
.++.+|..-++..-.....+-+.|+|.|..--+..........+++.|..-.++++.+.|+..+..+.+++.. ......
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 378 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 378 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666554445666778888888643222222333446888999999999999999999999998753 222223
Q ss_pred hHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC----------HHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 95 YIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG----------ASEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 95 yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg----------~~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
.+...++|++.+..-. .|....+....+-..|+...+ -..++..|+..|+++++..|..++.++..
T Consensus 379 ~~~~~~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~ 454 (530)
T 1wa5_B 379 VIDANLIPPLVKLLEV----AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454 (530)
T ss_dssp HHHTTCHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3456778877765421 122233333334334443211 12377888889999999999999999875
Q ss_pred c
Q psy10447 165 T 165 (166)
Q Consensus 165 v 165 (166)
+
T Consensus 455 l 455 (530)
T 1wa5_B 455 I 455 (530)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.95 E-value=0.034 Score=47.06 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=95.0
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhhhcccCc-chh
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSP-DEEMKKIVLKVVKQCCATDGV-EAQ 94 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SP-DeEMKkiVLkVv~qc~~t~gv-~~~ 94 (166)
++.+|-.-++..-.....+-+.|+|.|.---+..........+++.|.+-.+++ +++.++....++.+++....- ...
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~ 366 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA 366 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 566666666666666777788899988753222222333355778888888899 999999999999999863221 122
Q ss_pred hHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh--------hCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 95 YIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK--------VGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 95 yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K--------vg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.+...++|+..+-.-.. |....+..+.+-..|+.. +.-..++..|+..|+++++..|..+++++..+
T Consensus 367 ~~~~~~i~~L~~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 367 VINAGIIGPLVNLLQTA----EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp HHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33456777777665322 333334444444444433 21234677888889999999999999998754
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.069 Score=42.75 Aligned_cols=149 Identities=11% Similarity=0.167 Sum_probs=97.0
Q ss_pred hhhhhhhHHHHHHH-HhhhcchHHHHHHHHhhhcccCC-hhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc
Q psy10447 12 ESFDSVLKPLWKGI-RTHRGKGLAAFLKAIGYLIPLMD-AEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD 89 (166)
Q Consensus 12 EsFd~VL~plW~Gi-r~hRGK~LAaFLKaiG~IIPLMD-~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~ 89 (166)
..|..++.-|=+++ +.....+-.+-++|+|.|.--+- ++...-|...+++.|..-|......++...-..+...+.+-
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 35667788888888 55566667788999999986555 55543677889999999999999888877766666655532
Q ss_pred C-cch-hhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC---------H-HHHHHHhhcccccchHHHHHH
Q psy10447 90 G-VEA-QYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG---------A-SEIINRVVDDLKDENEQYRKM 157 (166)
Q Consensus 90 g-v~~-~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg---------~-~~il~~iv~~lKDesE~~R~M 157 (166)
+ +.+ .|+ +.+++..|..+ .... .+.......+-..+++..+ . ..++..+...|.|.+...|.-
T Consensus 136 ~~~~~~~~l-~~ll~~l~~~l-~~k~---~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~a 210 (249)
T 2qk1_A 136 DPLASSGRN-EDMLKDILEHM-KHKT---PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTI 210 (249)
T ss_dssp CTTCTTCTT-HHHHHHHHHHT-TCSS---HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHH
T ss_pred cccccCCcH-HHHHHHHHHHH-cCCC---hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 1 111 123 45666666543 1111 1111112222222333333 2 578999999999999999999
Q ss_pred HHHHHhhc
Q psy10447 158 VMESIEKT 165 (166)
Q Consensus 158 ~~eti~kv 165 (166)
+++|+..+
T Consensus 211 A~~~l~~i 218 (249)
T 2qk1_A 211 GFESFAIL 218 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 25
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.78 E-value=0.13 Score=37.87 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=19.0
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhhh
Q psy10447 58 EVMLILIREFQSPDEEMKKIVLKVVKQCC 86 (166)
Q Consensus 58 evm~il~rEF~SPDeEMKkiVLkVv~qc~ 86 (166)
+..+.|.+-.++||++.|...+..+.++.
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34555666667777777777777776654
No 26
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.66 E-value=0.1 Score=38.62 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=17.6
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhhh
Q psy10447 59 VMLILIREFQSPDEEMKKIVLKVVKQCC 86 (166)
Q Consensus 59 vm~il~rEF~SPDeEMKkiVLkVv~qc~ 86 (166)
..+.|.+-+++||++.|...+..+.+..
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4455566666677776666666666554
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.60 E-value=0.088 Score=39.56 Aligned_cols=142 Identities=11% Similarity=0.125 Sum_probs=84.4
Q ss_pred HHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcc-cCcchhhHhh
Q psy10447 20 PLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT-DGVEAQYIKD 98 (166)
Q Consensus 20 plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t-~gv~~~yir~ 98 (166)
++-+.++..--.....-++++..++---++.........+++.|++-.++++++.+...+..+.+++.. +......+..
T Consensus 16 ~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (252)
T 4db8_A 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (252)
T ss_dssp HHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 333344444334444445555554443122334455567889999999999999999999999999873 3333333344
Q ss_pred hhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------HhhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 99 EILPPFFKNFWNHRMALDRRNYRQLVDTTVEIA-------NKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 99 ~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA-------~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
..+|...+-.-. -|.......+.+-..|+ ..+....++..|+..|+|+++..|+.++.++..+
T Consensus 96 g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 96 GALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp THHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 466655543311 11112222222222232 2233335778889999999999999999998754
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.54 E-value=0.05 Score=43.96 Aligned_cols=144 Identities=10% Similarity=0.063 Sum_probs=86.7
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHh-hhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc--Ccch
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYAN-YYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD--GVEA 93 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~-yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~--gv~~ 93 (166)
++.+|-+-+.......-.+-+.|+|.|..- +++... .....+++.|.+-++++|.+.|+....++.+++... ....
T Consensus 277 ~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 277 ALQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 566666666655455556677888888653 333322 233478888888899999999999999999988642 1222
Q ss_pred hhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH------------------hhCHHHHHHHhhcccccchHHHH
Q psy10447 94 QYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN------------------KVGASEIINRVVDDLKDENEQYR 155 (166)
Q Consensus 94 ~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~------------------Kvg~~~il~~iv~~lKDesE~~R 155 (166)
..+...++|.+.+-.=. -|.+.......+-..|+. .+.-...+++|..-+.++|+..|
T Consensus 356 ~l~~~~~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~ 431 (450)
T 2jdq_A 356 YLVELGCIKPLCDLLTV----MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIY 431 (450)
T ss_dssp HHHHHTCHHHHHHGGGS----SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHH
Confidence 23345677777654310 022222222222222222 12111224555666778999999
Q ss_pred HHHHHHHhhc
Q psy10447 156 KMVMESIEKT 165 (166)
Q Consensus 156 ~M~~eti~kv 165 (166)
+.++.+|++.
T Consensus 432 ~~a~~~l~~~ 441 (450)
T 2jdq_A 432 QKAFDLIEHY 441 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 29
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.43 E-value=0.13 Score=46.32 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=89.8
Q ss_pred hhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHH
Q psy10447 28 HRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKN 107 (166)
Q Consensus 28 hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~ 107 (166)
|+--+-|--+.|+-.|+-+- + ..-+-+.....|.+=.+|+|.+.|.++|..+.+.+.+.+- ++++ +...+.||..
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~-~--~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~-~~~~~~i~~~ 376 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHD-S--EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV-KTHIETVINA 376 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-C--CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH-HTTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcC-C--cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH-HHHHHHHHHH
Confidence 44333355555665555543 2 1234456777788777899999999999999999887632 3333 2233344443
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 108 FWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 108 FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
. +..-|....+.-.++...|++.-+...|+..|..++++.+..||+.++.+|..
T Consensus 377 L---~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~ 430 (621)
T 2vgl_A 377 L---KTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAI 430 (621)
T ss_dssp H---TTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred h---ccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 12456655566668888888888899999999999999999999999998864
No 30
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.27 E-value=0.17 Score=37.41 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhhhc
Q psy10447 58 EVMLILIREFQSPDEEMKKIVLKVVKQCCA 87 (166)
Q Consensus 58 evm~il~rEF~SPDeEMKkiVLkVv~qc~~ 87 (166)
+..+.|.+-+++||.+.|...+..+.+...
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 567778888899999999999998887754
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.94 E-value=0.27 Score=41.80 Aligned_cols=145 Identities=12% Similarity=0.138 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHh-hhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCc-ch
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYAN-YYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGV-EA 93 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~-yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv-~~ 93 (166)
.++.+|-.-++..-......-+.|+|.|..- ++++.. .....+++.|.+-++++|.++++..+..+.+++...+- ..
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 3456666666655555666667788887643 233322 23345788888889999999999999999999876522 22
Q ss_pred hhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh-------hCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 94 QYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK-------VGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 94 ~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K-------vg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.-....++|.+.+-.= ..|.........+-..|+.. +-...++..|+..|+|+++..|.-++.++..+
T Consensus 252 ~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIY----SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp HHHHGGGHHHHHHHTT----CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 2234566666654321 11222222222333333321 11125678889999999999999999988654
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.87 E-value=0.1 Score=46.63 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=73.2
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHH
Q psy10447 58 EVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGAS 137 (166)
Q Consensus 58 evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~ 137 (166)
..+..|.+=.+|+|.+.|.++|..+.+.... .|+.+. ...+.+|... .--|....+.-+++-..|++.-++.
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~-~~~~~i~~~l----~d~d~~Ir~~alelL~~l~~~~nv~ 384 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ-RHRSTIVDCL----KDLDVSIKRRAMELSFALVNGNNIR 384 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG-GGHHHHHHGG----GSSCHHHHHHHHHHHHHHCCSSSTH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH-HHHHHHHHHc----cCCChhHHHHHHHHHHHHcccccHH
Confidence 4566777778899999999999999888765 333332 2223333322 2234445555556777888888889
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 138 EIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 138 ~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.|+..+..++.|.++.||+.++.+|.++
T Consensus 385 ~iv~eL~~~l~~~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 385 GMMKELLYFLDSCEPEFKADCASGIFLA 412 (618)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 33
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.84 E-value=0.24 Score=36.29 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcc
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT 88 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t 88 (166)
....++-+.++..-...-..-+.++|.+=. .+..+.|.+-+++||.+.|...+..+.+....
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 334444444444333333444555554421 24566788888999999999999998877543
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.36 E-value=0.11 Score=43.83 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=94.0
Q ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccC-cch
Q psy10447 15 DSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDG-VEA 93 (166)
Q Consensus 15 d~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~g-v~~ 93 (166)
..++.+|-.-++..-......-+.|++++..--+..........+++.|+.-.++++++.+...++++.+++.... ...
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 4566777766666556677788889998875433333344455788899999999999999999999999987432 222
Q ss_pred hhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------hhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 94 QYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN-------KVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 94 ~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~-------Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
..+...++|.+.+-.-.. .+....+..+.+-..|+. .+--..++..|+.-|++++...|+.++.++..+
T Consensus 323 ~~~~~~~l~~L~~lL~~~---~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl 398 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQN---LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNA 398 (528)
T ss_dssp HHHTTTHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHcCC---CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333445566554432210 012222233333333332 111124567788888899999999999988753
No 35
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.65 E-value=0.77 Score=32.15 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=60.3
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHH
Q psy10447 61 LILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEII 140 (166)
Q Consensus 61 ~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il 140 (166)
+.|.+-.++||.+.|...+..+-+....+ .++..-+.. .|. .-.|-...+.--.++|..+.+
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~~~----------a~~~L~~~L------~d~--~~~VR~~A~~aL~~~~~~~a~ 106 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQDER----------AVEPLIKLL------EDD--SGFVRSGAARSLEQIGGERVR 106 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCSHH----------HHHHHHHHH------HHC--CTHHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHH------cCC--CHHHHHHHHHHHHHhCcHHHH
Confidence 66778888999999999999988765321 222222211 122 122333333333457888899
Q ss_pred HHhhcccccchHHHHHHHHHHHhhc
Q psy10447 141 NRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 141 ~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
..|+..|+|+++..|..+.+++.++
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.42 E-value=1.1 Score=39.42 Aligned_cols=147 Identities=11% Similarity=0.091 Sum_probs=91.3
Q ss_pred hhHHHHHHHHhhh--cchHHHHHHHHhhhcccCChh--HHh--hhHHHHHHHHHhhcCCCc-HHHHHHHHHHHHhhhccc
Q psy10447 17 VLKPLWKGIRTHR--GKGLAAFLKAIGYLIPLMDAE--YAN--YYTKEVMLILIREFQSPD-EEMKKIVLKVVKQCCATD 89 (166)
Q Consensus 17 VL~plW~Gir~hR--GK~LAaFLKaiG~IIPLMD~e--yA~--yYt~evm~il~rEF~SPD-eEMKkiVLkVv~qc~~t~ 89 (166)
++++|..-+..+. .....+-++|+|+|.-- +++ ... .-....++.|.+-..+++ ++.++..+..+.+++...
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~-~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLTSR-HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS-STTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 5667777776643 46777888999998521 122 111 222346788899899886 699999999999998766
Q ss_pred CcchhhHhhhhchHHHHHHH-----HHHhhhh---------hhhhhHHH-HHHHHHH---------HhhCHHHHHHHhhc
Q psy10447 90 GVEAQYIKDEILPPFFKNFW-----NHRMALD---------RRNYRQLV-DTTVEIA---------NKVGASEIINRVVD 145 (166)
Q Consensus 90 gv~~~yir~~i~~~FF~~FW-----~rR~AlD---------r~~~~~vv-~TTv~lA---------~Kvg~~~il~~iv~ 145 (166)
......+...++|...+... +|+.|.- ..+..+++ .++--|+ ..+....++..|+.
T Consensus 385 ~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~ 464 (644)
T 2z6h_A 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464 (644)
T ss_dssp GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHH
Confidence 55444445566666554432 3332210 00112232 1211222 24444556788888
Q ss_pred ccccchHHHHHHHHHHHhh
Q psy10447 146 DLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 146 ~lKDesE~~R~M~~eti~k 164 (166)
.|+|.++..|+.+..++.+
T Consensus 465 lL~~~~~~v~~~a~~aL~~ 483 (644)
T 2z6h_A 465 LLYSPIENIQRVAAGVLCE 483 (644)
T ss_dssp HTTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHH
Confidence 8999999999999988764
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.38 E-value=0.89 Score=39.17 Aligned_cols=145 Identities=12% Similarity=0.159 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhH-HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchh
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEY-ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQ 94 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~ey-A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~ 94 (166)
.++.+|-.-++..-.....+-++|+|.|.-- +++. ..-....+++.|..=.+||+++.|+....++.+++....-..+
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~ 371 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 371 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH
Confidence 3566677767666667778889999998643 3322 2222334566788888999999999999999998875433333
Q ss_pred hH-hhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh--------hCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 95 YI-KDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK--------VGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 95 yi-r~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K--------vg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
.+ ...++|+.....-. .|....+..+.+-..|+.. +--..++.-|++-|++.+...+..+++++..+
T Consensus 372 ~v~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 372 QVVNHGLVPFLVGVLSK----ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33 33466665543311 0111111111221122211 11122466677778888888899988888754
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.14 E-value=2.2 Score=32.70 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHH-HHHHHHHHh
Q psy10447 55 YTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLV-DTTVEIANK 133 (166)
Q Consensus 55 Yt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv-~TTv~lA~K 133 (166)
+..++.+.|..-.++||.+.|......+.++...+ .+|...+. ..|. +. .|- .+...| .+
T Consensus 125 ~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----------~~~~L~~~------l~d~-~~-~vr~~a~~aL-~~ 185 (280)
T 1oyz_A 125 YSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA----------TIPLLINL------LKDP-NG-DVRNWAAFAI-NI 185 (280)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C----------CHHHHHHH------HTCS-SH-HHHHHHHHHH-HH
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHH------HcCC-CH-HHHHHHHHHH-Hh
Confidence 35677888888889999999998888887764322 22222211 0111 11 111 112222 23
Q ss_pred hC--HHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 134 VG--ASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 134 vg--~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
+| ...++..++..|+|+++.-|..++.++.++
T Consensus 186 ~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 186 NKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred hccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 45 678888888888999999999998888764
No 39
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.91 E-value=0.66 Score=40.86 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=59.3
Q ss_pred HHHHHHHhhcCCCcHHHHHH-HHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCH
Q psy10447 58 EVMLILIREFQSPDEEMKKI-VLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGA 136 (166)
Q Consensus 58 evm~il~rEF~SPDeEMKki-VLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~ 136 (166)
|+- -|.++|+|+|++-|+. +.|++- ..+-|......--++ .+=++.+.-..|+++.-....--+...
T Consensus 14 e~~-~i~~~L~~~~~~~k~~~~~kli~--~~~~G~d~~~~~~~v---------i~l~~s~~~~~Krl~yl~l~~~~~~~~ 81 (591)
T 2vgl_B 14 EIF-ELKAELNNEKKEKRKEAVKKVIA--AMTVGKDVSSLFPDV---------VNCMQTDNLELKKLVYLYLMNYAKSQP 81 (591)
T ss_dssp HHH-HHHHHTTSSCHHHHHHHHHHHHH--HHHTTCCCGGGHHHH---------HHTTSSSCHHHHHHHHHHHHHHHHHSH
T ss_pred hHH-HHHHHHcCCCHHHHHHHHHHHHH--HHHCCCChHHHHHHH---------HHHhCCCCHHHHHHHHHHHHHHcccCc
Confidence 444 4899999999776665 566665 334454432221122 223444445566666444333222222
Q ss_pred ---HHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 137 ---SEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 137 ---~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
..++..+..+|+|+|+..|.+|+.++.++
T Consensus 82 e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i 113 (591)
T 2vgl_B 82 DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI 113 (591)
T ss_dssp HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC
Confidence 23578889999999999999999998765
No 40
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.29 E-value=0.99 Score=35.96 Aligned_cols=126 Identities=12% Similarity=0.198 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhh-hHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcch-
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANY-YTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEA- 93 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~y-Yt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~- 93 (166)
.+|.++-.-++.-...+-.+=-.|+-.++.-++| .+-| |-..+|..|..-++++....|...|..+..|+.+.+-.|
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 3455555544433333323333444445555555 2222 577899999999999999999999999999998887521
Q ss_pred ---hhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhccc
Q psy10447 94 ---QYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDL 147 (166)
Q Consensus 94 ---~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~l 147 (166)
.|+...++|..-+..|.. |+.....-+++-..|+.-+|-.. +...++.|
T Consensus 183 ~l~~~l~~~iip~l~~~l~D~----~~~VR~aA~~~l~~i~~~vG~~~-~~p~l~~L 234 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQIVNDT----QPAIRTIGFESFAILIKIFGMNT-FVKTLEHL 234 (249)
T ss_dssp HHHHHHTTTHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHHCSGG-GHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHH
Confidence 354478898888888754 55566666788888999899544 45555555
No 41
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.19 E-value=2.3 Score=35.06 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=87.5
Q ss_pred hhHHHHHHHHhhh--cchHHHHHHHHhhhcccCChhH----HhhhHHHHHHHHHhhcCCCc-HHHHHHHHHHHHhhhccc
Q psy10447 17 VLKPLWKGIRTHR--GKGLAAFLKAIGYLIPLMDAEY----ANYYTKEVMLILIREFQSPD-EEMKKIVLKVVKQCCATD 89 (166)
Q Consensus 17 VL~plW~Gir~hR--GK~LAaFLKaiG~IIPLMD~ey----A~yYt~evm~il~rEF~SPD-eEMKkiVLkVv~qc~~t~ 89 (166)
++++|.+-++.+. .....+-++|+|+|..- +|+. ...-....++.|.+-..+++ ++.++..+.++.+++...
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLTSR-HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS-STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 5677777776543 35666778888888432 3331 12223345788888888887 599999999999998765
Q ss_pred CcchhhHhhhhchHHHHHH-----HHHHhhh---------hhhhhhHHH----HHHHHHH------HhhCHHHHHHHhhc
Q psy10447 90 GVEAQYIKDEILPPFFKNF-----WNHRMAL---------DRRNYRQLV----DTTVEIA------NKVGASEIINRVVD 145 (166)
Q Consensus 90 gv~~~yir~~i~~~FF~~F-----W~rR~Al---------Dr~~~~~vv----~TTv~lA------~Kvg~~~il~~iv~ 145 (166)
.-....+...++|+..+.. -+|+.|. +..+..+++ .+-..|+ ..+.-..++..++.
T Consensus 388 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ 467 (529)
T 1jdh_A 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467 (529)
T ss_dssp GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHH
Confidence 4444444455666554432 1233211 111122222 2222222 12333345678888
Q ss_pred ccccchHHHHHHHHHHHhh
Q psy10447 146 DLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 146 ~lKDesE~~R~M~~eti~k 164 (166)
-++|.++..|+.+..++..
T Consensus 468 ll~~~~~~v~~~a~~~l~~ 486 (529)
T 1jdh_A 468 LLYSPIENIQRVAAGVLCE 486 (529)
T ss_dssp GGGCSCHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHH
Confidence 9999999999999988764
No 42
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.10 E-value=0.26 Score=40.77 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhh-hhchHHHHHHHHHHhhhhh
Q psy10447 39 AIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKD-EILPPFFKNFWNHRMALDR 117 (166)
Q Consensus 39 aiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~-~i~~~FF~~FW~rR~AlDr 117 (166)
|++.++|.-+. ..++...++.|++-.+++|++.|...+..+.+++..+......+.. ..+++..+..= ...|.
T Consensus 1 a~~~l~~~~~~---~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~---~~~~~ 74 (529)
T 1jdh_A 1 AVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ---NTNDV 74 (529)
T ss_dssp CCCSCC-------------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHH---HCCCH
T ss_pred ChHHHhhcCch---hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHh---cCCCH
Confidence 45667776642 2345566777888788999999999999999988655322111111 34444333210 00121
Q ss_pred hhhhHHHHHHHHHH------HhhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 118 RNYRQLVDTTVEIA------NKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 118 ~~~~~vv~TTv~lA------~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
...+....+-..|+ ..++....+..++..|+++++..|..++.++.++
T Consensus 75 ~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 128 (529)
T 1jdh_A 75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11111112222222 2234445778888899999999999999988654
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=91.22 E-value=3.8 Score=31.37 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhhhc
Q psy10447 57 KEVMLILIREFQSPDEEMKKIVLKVVKQCCA 87 (166)
Q Consensus 57 ~evm~il~rEF~SPDeEMKkiVLkVv~qc~~ 87 (166)
.++.+.|.+-+++||.+.|......+.++..
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 4677888888999999999999888877653
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.66 E-value=1.4 Score=39.35 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=68.2
Q ss_pred chHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHH-HHHHHHHhhhcccCcchhhHhhhhchHHHHHHH
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKK-IVLKVVKQCCATDGVEAQYIKDEILPPFFKNFW 109 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKk-iVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW 109 (166)
++|..|.|.|+.-= - .++-...-.+|+- -|..+|+++|.+-|+ .+.|++-. .+-|.+..+.--+++
T Consensus 10 ~~l~~~i~~ir~~~-~-~~~e~~~i~~e~~-~ir~~l~~~~~~~k~~~l~kli~~--~~~G~d~~~~~~~vi-------- 76 (618)
T 1w63_A 10 IRLRELIRTIRTAR-T-QAEEREMIQKECA-AIRSSFREEDNTYRCRNVAKLLYM--HMLGYPAHFGQLECL-------- 76 (618)
T ss_dssp CCHHHHHHHHTTCC-C-HHHHHHHHHHHHH-HHHHHHTTTCTTTHHHHHHHHHHH--HHTTCCCGGGHHHHH--------
T ss_pred ccHHHHHHHHHcCC-C-hHHHHHHHHHHHH-HHHHHhhCCCHHHHHHHHHHHHHH--HHcCCCCcchHHHHH--------
Confidence 56778888777541 0 1234456667754 488899887765554 45555553 334544333322333
Q ss_pred HHHhhhhhhhhhHHHHHH-HHHHHh-hC-HHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 110 NHRMALDRRNYRQLVDTT-VEIANK-VG-ASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 110 ~rR~AlDr~~~~~vv~TT-v~lA~K-vg-~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
+=++++.-..|++++-. ..+++. -+ ..-++..+..+|+|.|+..|-+|+.|+.++
T Consensus 77 -k~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i 134 (618)
T 1w63_A 77 -KLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM 134 (618)
T ss_dssp -HHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH
T ss_pred -HHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc
Confidence 22334444556666432 223221 11 123667788888888888888888887664
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=90.10 E-value=0.89 Score=39.17 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=83.8
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHH-hhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhh
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYA-NYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQY 95 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA-~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~y 95 (166)
++.+|=.-++..-......-++|+|.|.-- +++.. .--...+++.|..=.++|+++.|+.....+.+++....-..+.
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 455555556666667777888999998643 22222 2222334566777788999999999999999987654333333
Q ss_pred H-hhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH--------hhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 96 I-KDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN--------KVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 96 i-r~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~--------Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
+ ...++|+..+..-. .|.+..+..+.+-..|+. .+--..++.-|++-|++.+...+..+++++.++
T Consensus 354 v~~~g~i~~Lv~lL~~----~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSK----ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3 34566666554321 111122222222222221 111223466677778888888888888888654
No 46
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.08 E-value=0.39 Score=42.91 Aligned_cols=93 Identities=20% Similarity=0.325 Sum_probs=59.7
Q ss_pred ccCCcchhhhh-----hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHH-HHHHHHhhcCCCcHHHHHHH
Q psy10447 5 HCHTLSIESFD-----SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKE-VMLILIREFQSPDEEMKKIV 78 (166)
Q Consensus 5 as~PYGIEsFd-----~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~e-vm~il~rEF~SPDeEMKkiV 78 (166)
.+.|+|.+ || ++++|-|--+.- +-.-||+.+-+ |-.||..|..|... .+.-|..-|.|||..-|..+
T Consensus 77 ~~~~~~~~-~d~eedep~~e~sWpHLql----VYe~llrfi~s--~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~L 149 (403)
T 3fga_B 77 SSNPTGAE-FDPEEDEPTLEAAWPHLQL----VYEFFLRFLES--PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFL 149 (403)
T ss_dssp CSSCCSTT-CCGGGCCCCCCTTHHHHHH----HHHHHHHHHHC--TTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHH
T ss_pred CCCCcccc-CCccccccccccCcHHHHH----HHHHHHHHHhc--cccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHH
Confidence 35677754 64 799999987654 66677787776 67788887766444 45558889999999987665
Q ss_pred HHHHHhhhcccCcchhhHhhhhchHH
Q psy10447 79 LKVVKQCCATDGVEAQYIKDEILPPF 104 (166)
Q Consensus 79 LkVv~qc~~t~gv~~~yir~~i~~~F 104 (166)
--++..--+.=-.-..|||..|-.-|
T Consensus 150 ktiLhrIY~kf~~~R~~Irk~innif 175 (403)
T 3fga_B 150 KTTLHRIYGKFLGLRAYIRKQINNIF 175 (403)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55444322222223345555444333
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=89.71 E-value=2.5 Score=37.17 Aligned_cols=143 Identities=11% Similarity=0.058 Sum_probs=83.5
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCC-CcHHHHHHHHHHHHhhhcccCcchhhH
Q psy10447 18 LKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS-PDEEMKKIVLKVVKQCCATDGVEAQYI 96 (166)
Q Consensus 18 L~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~S-PDeEMKkiVLkVv~qc~~t~gv~~~yi 96 (166)
+.+|=+-++..--.....-+++++.+---.+...+-.....+++.|++-..+ +|.+.++..+..+.+++..+.......
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 3333333333333344445667777653322222222234566777777765 599999999999998877654333333
Q ss_pred hhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh-------hCHHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 97 KDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK-------VGASEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 97 r~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K-------vg~~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
....+|.+.+-.-. .|.......+.+-..|+.. +.-..++..|+..|++++..++..+++++..
T Consensus 96 ~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 96 KSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp TTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 44566666553211 1333344444555555543 1224578889999999999999998877754
No 48
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.60 E-value=0.64 Score=38.52 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHhh-hcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcc-h
Q psy10447 16 SVLKPLWKGIRTH-RGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVE-A 93 (166)
Q Consensus 16 ~VL~plW~Gir~h-RGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~-~ 93 (166)
..+.||++-++.. .-.....-+.||++|+-=-.+.-..+.....++.|++-.+|+|.+.|+-....+.+++....-. .
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH
Confidence 4788999988864 4456677788888876322233334556678899999999999999999999999987653222 2
Q ss_pred hhHhhhhchHHHH
Q psy10447 94 QYIKDEILPPFFK 106 (166)
Q Consensus 94 ~yir~~i~~~FF~ 106 (166)
..+...++|+..+
T Consensus 204 ~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 204 TLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHTTHHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 2234455666554
No 49
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=88.20 E-value=4.3 Score=37.29 Aligned_cols=147 Identities=10% Similarity=0.105 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhhhc--chHHHHHHHHhhhcccCChhH--H--hhhHHHHHHHHHhhcCCCcH-HHHHHHHHHHHhhhccc
Q psy10447 17 VLKPLWKGIRTHRG--KGLAAFLKAIGYLIPLMDAEY--A--NYYTKEVMLILIREFQSPDE-EMKKIVLKVVKQCCATD 89 (166)
Q Consensus 17 VL~plW~Gir~hRG--K~LAaFLKaiG~IIPLMD~ey--A--~yYt~evm~il~rEF~SPDe-EMKkiVLkVv~qc~~t~ 89 (166)
++.+|.+-+..... .....-++|+|.|--- +++. + .--....++.|.+-+.++++ +.++....++.+++...
T Consensus 442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~-~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 442 GIEALVRTVLRAGDREDITEPAICALRHLTSR-HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 56677777765432 5666678899988432 3331 1 12223457788888999886 99999999999998654
Q ss_pred CcchhhHhhhhchHHHHHH----H-HHHhhh---------hhhhhhHHH----HHHHHHH------HhhCHHHHHHHhhc
Q psy10447 90 GVEAQYIKDEILPPFFKNF----W-NHRMAL---------DRRNYRQLV----DTTVEIA------NKVGASEIINRVVD 145 (166)
Q Consensus 90 gv~~~yir~~i~~~FF~~F----W-~rR~Al---------Dr~~~~~vv----~TTv~lA------~Kvg~~~il~~iv~ 145 (166)
......+...++|...+.. + +|+-|. +......+. .+-..|| ..+....++..|+.
T Consensus 521 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~ 600 (780)
T 2z6g_A 521 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQ 600 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHH
Confidence 4333333344555444332 1 222110 110111222 2222221 11223346778899
Q ss_pred ccccchHHHHHHHHHHHhh
Q psy10447 146 DLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 146 ~lKDesE~~R~M~~eti~k 164 (166)
.|+++++..|+.+..++..
T Consensus 601 lL~~~~~~v~~~a~~aL~~ 619 (780)
T 2z6g_A 601 LLYSPIENIQRVAAGVLCE 619 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.17 E-value=3.9 Score=35.13 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=87.3
Q ss_pred hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhH-HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc-
Q psy10447 12 ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEY-ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD- 89 (166)
Q Consensus 12 EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~ey-A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~- 89 (166)
+.-..++.+|++-+...--..+..-+.|++++.-- +++. ..-....+++.|+.-..+++.+.+...++.+.+++...
T Consensus 247 ~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 247 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence 34456777788777766666666667777776532 1222 11223346778888899999999999999999987543
Q ss_pred CcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------hhCHHHHHHHhhcccccchHHHHHHHHHHH
Q psy10447 90 GVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN-------KVGASEIINRVVDDLKDENEQYRKMVMESI 162 (166)
Q Consensus 90 gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~-------Kvg~~~il~~iv~~lKDesE~~R~M~~eti 162 (166)
..+..-+....++.+.+-. . ..+....+...-+--.|+. .+--..++..|+..|++.+...|+.|..||
T Consensus 326 ~~~~~i~~~g~l~~L~~LL-~---~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 326 EQTQKVIDAGALAVFPSLL-T---NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI 401 (529)
T ss_dssp HHHHHHHHTTGGGGHHHHT-T---CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHHHH-c---CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2233333444555443311 0 0011111111122222221 111234677788889999999999999888
Q ss_pred hh
Q psy10447 163 EK 164 (166)
Q Consensus 163 ~k 164 (166)
..
T Consensus 402 ~n 403 (529)
T 3tpo_A 402 TN 403 (529)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=86.10 E-value=4.1 Score=36.68 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=75.3
Q ss_pred chHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCC----CcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHH
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS----PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFK 106 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~S----PDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~ 106 (166)
|+|..|.|.|+.-=- -++=..+-.+|+-. |..+|++ ...+.|+.+.|++--... |-...+. ||.
T Consensus 11 ~~l~~~I~~ir~~~~--~~~e~~~i~~E~~~-ir~~~~~~~~~~~~~k~~~l~Kli~l~~~--G~d~s~~-------~~~ 78 (621)
T 2vgl_A 11 RGLAVFISDIRNCKS--KEAEIKRINKELAN-IRSKFKGDKALDGYSKKKYVCKLLFIFLL--GHDIDFG-------HME 78 (621)
T ss_dssp HHHHHHHHHHHHCSS--HHHHHHHHHHHHHH-HHHHHHSSSCCCHHHHHHHHHHHHHHHHH--SCCCCSC-------HHH
T ss_pred hhHHHHHHHHHcCCC--HHHHHHHHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHc--CCCCchh-------HHH
Confidence 678889888886520 02335566677765 8899985 235677888888875443 4433221 222
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhCHH---HHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 107 NFWNHRMALDRRNYRQLVDTTVEIANKVGAS---EIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 107 ~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~---~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
-++=++++.-..|++++-....--+-... -++.-+..||+|.|+..|-+|+.|+..+
T Consensus 79 --vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i 138 (621)
T 2vgl_A 79 --AVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV 138 (621)
T ss_dssp --HHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred --HHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc
Confidence 12334555556677775555444333322 3566778899999999999999888764
No 52
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=84.16 E-value=1.7 Score=38.70 Aligned_cols=94 Identities=18% Similarity=0.340 Sum_probs=57.2
Q ss_pred cCCcchhhh-----hhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHh-hhHHHHHHHHHhhcCCCcHHHHHHHH
Q psy10447 6 CHTLSIESF-----DSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYAN-YYTKEVMLILIREFQSPDEEMKKIVL 79 (166)
Q Consensus 6 s~PYGIEsF-----d~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~-yYt~evm~il~rEF~SPDeEMKkiVL 79 (166)
+.|+|. .| |++++|-|--+.- +-.-||+-+-+ |-+||..|. |-+...+.-|..-|+|||..-|.-+.
T Consensus 123 ~~~~~~-~~d~eedep~~e~sWpHLql----VYe~llrfv~s--~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lk 195 (392)
T 2jak_A 123 SNPTGA-EFDPEEDEPTLEAAWPHLQL----VYEFFLRFLES--PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLK 195 (392)
T ss_dssp ---------------CCCCTTHHHHHH----HHHHHHHHHHC--TTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcccc-cCCccccccccccCChhHHH----HHHHHHHHHHc--cCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHH
Confidence 456666 46 5699999986653 55556664433 566777654 45666777788899999999887776
Q ss_pred HHHHhhhcccCcchhhHhhhhchHHHH
Q psy10447 80 KVVKQCCATDGVEAQYIKDEILPPFFK 106 (166)
Q Consensus 80 kVv~qc~~t~gv~~~yir~~i~~~FF~ 106 (166)
-++...-+.-..-..|||..|-.-|.+
T Consensus 196 tiLhrIY~Kf~~~R~~Irk~i~nif~~ 222 (392)
T 2jak_A 196 TTLHRIYGKFLGLRAYIRKQINNIFYR 222 (392)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555444444556666666655443
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=82.26 E-value=4.8 Score=34.56 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=87.0
Q ss_pred hhhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHh-hhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc
Q psy10447 11 IESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYAN-YYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD 89 (166)
Q Consensus 11 IEsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~-yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~ 89 (166)
++....++.+|.+-++..--..+..-+.|++++.-- +++... -....+.+.|+.-..+++.+.+...++.+.+++...
T Consensus 227 ~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 227 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence 344456777777777766666677777777777421 122211 122345777888899999999999999999986543
Q ss_pred C-cchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH----------hhCHHHHHHHhhcccccchHHHHHHH
Q psy10447 90 G-VEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN----------KVGASEIINRVVDDLKDENEQYRKMV 158 (166)
Q Consensus 90 g-v~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~----------Kvg~~~il~~iv~~lKDesE~~R~M~ 158 (166)
. .+..-+...+++.+.+-. .........+++.-|++ .+--..++..|+.-|++.+...|+.+
T Consensus 306 ~~~~~~i~~~g~l~~L~~LL-------~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 306 DEQTQKVIDAGALAVFPSLL-------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHHHHHHHTTGGGGCC-CT-------TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHhhccchHHHHHHh-------cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 3 222223344555443211 11111111122222222 12123467788899999999999999
Q ss_pred HHHHhh
Q psy10447 159 MESIEK 164 (166)
Q Consensus 159 ~eti~k 164 (166)
..|+..
T Consensus 379 a~aL~N 384 (510)
T 3ul1_B 379 AWAITN 384 (510)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 54
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.97 E-value=13 Score=33.81 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=83.9
Q ss_pred hhhhhhhHHHHHHHHhhhc----chHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhc
Q psy10447 12 ESFDSVLKPLWKGIRTHRG----KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCA 87 (166)
Q Consensus 12 EsFd~VL~plW~Gir~hRG----K~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~ 87 (166)
+.++.+++.+-..+.++.+ +.+-|.+-|+|+|..-++++-. -+-..++.+|. ++.+++.-.|.+.+.++-+.+.
T Consensus 441 ~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~-~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~ 518 (963)
T 2x19_B 441 ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS-DVVPGLIGLIP-RISISNVQLADTVMFTIGALSE 518 (963)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC-SHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh-HHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHH
Confidence 3344445555454432211 3456679999999888765332 34556888554 6777888899999999998875
Q ss_pred ccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC------HHHHHHHhhccccc--chHHHHHHHH
Q psy10447 88 TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG------ASEIINRVVDDLKD--ENEQYRKMVM 159 (166)
Q Consensus 88 t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg------~~~il~~iv~~lKD--esE~~R~M~~ 159 (166)
--+-.++|+ ..+++-.|+++ . |.+.......+-..|+++.+ ...+++.+..-+.. -+..-|..++
T Consensus 519 ~l~~~~~~l-~~vl~~l~~~l-~-----~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 519 WLADHPVMI-NSVLPLVLHAL-G-----NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp HHHHCHHHH-TTTHHHHHHHT-T-----CGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHhCHHHH-HHHHHHHHHHh-C-----CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 433346775 46777677654 1 22333333344444555432 23455555444432 2445677777
Q ss_pred HHHhh
Q psy10447 160 ESIEK 164 (166)
Q Consensus 160 eti~k 164 (166)
+|+..
T Consensus 592 eai~~ 596 (963)
T 2x19_B 592 QALGF 596 (963)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 55
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.26 E-value=4.3 Score=36.59 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=62.0
Q ss_pred cCCcchhhh-----hhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHh-hhHHHHHHHHHhhcCCCcHHHHHHHH
Q psy10447 6 CHTLSIESF-----DSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYAN-YYTKEVMLILIREFQSPDEEMKKIVL 79 (166)
Q Consensus 6 s~PYGIEsF-----d~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~-yYt~evm~il~rEF~SPDeEMKkiVL 79 (166)
+.|+|. .| |++++|-|--+.- +-.-||+-+-+ |-.||..|. |-+...+.-|..-|.|||..-|-.+.
T Consensus 111 ~~~~~~-~~d~eedep~~e~sWpHLql----VYe~llrfv~s--~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lk 183 (449)
T 2npp_B 111 SNPTGA-EFDPEEDEPTLEAAWPHLQL----VYEFFLRFLES--PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLK 183 (449)
T ss_dssp SSCCSS-SSCGGGCCCCCCTTHHHHHH----HHHHHHHHHTS--TTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHH
T ss_pred CCcccc-cCCCccccccccccchHHHH----HHHHHHHHHHc--cCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHH
Confidence 456665 45 4699999986654 55556664432 556777654 44555677788899999999887777
Q ss_pred HHHHhhhcccCcchhhHhhhhchHHH
Q psy10447 80 KVVKQCCATDGVEAQYIKDEILPPFF 105 (166)
Q Consensus 80 kVv~qc~~t~gv~~~yir~~i~~~FF 105 (166)
-++...-+.--.-..|||..|-.-|+
T Consensus 184 tiLhrIY~Kf~~~R~~Irk~i~nif~ 209 (449)
T 2npp_B 184 TTLHRIYGKFLGLRAYIRKQINNIFY 209 (449)
T ss_dssp HHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555544555677777655444
No 56
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=76.92 E-value=19 Score=34.43 Aligned_cols=131 Identities=10% Similarity=0.065 Sum_probs=80.8
Q ss_pred chHHHHHHHHhhhcccCChhHHhhhH--HHHHHHHHhhcCCCcHHHHHHHHHHHHhhhc-ccCcchhhHh-hhhchHHHH
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYANYYT--KEVMLILIREFQSPDEEMKKIVLKVVKQCCA-TDGVEAQYIK-DEILPPFFK 106 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~yYt--~evm~il~rEF~SPDeEMKkiVLkVv~qc~~-t~gv~~~yir-~~i~~~FF~ 106 (166)
..-.+=+.|||+|.. +++.-..+- ...++.|+.=.+++|++.|+.....+.+++. ++.....-++ ...+|+..+
T Consensus 638 ~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 638 YLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp THHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence 344556778888865 444433333 3588899999999999999999999999887 4444333344 345554442
Q ss_pred HHH-----HHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccc---hHHHHHHHHHHHhhc
Q psy10447 107 NFW-----NHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDE---NEQYRKMVMESIEKT 165 (166)
Q Consensus 107 ~FW-----~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDe---sE~~R~M~~eti~kv 165 (166)
--= +++-|+.= ...++..+.+.++++.-..+++.|+.-|++. +..++.+++++++.+
T Consensus 716 LL~s~d~~vq~~A~~a--L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 716 LIANPSPAVQHRGIVI--ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHTCSSHHHHHHHHHH--HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHH--HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 110 11111110 0011112234556666666777777777654 789999999999864
No 57
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=76.51 E-value=20 Score=30.39 Aligned_cols=94 Identities=23% Similarity=0.406 Sum_probs=65.6
Q ss_pred HHHHHHhhc----CCCcHHHHHHHHHHHHhhhcccCc-chhhHhhhhchHHHHHHHHHHhhh--hh-h-hhhHHHHHHHH
Q psy10447 59 VMLILIREF----QSPDEEMKKIVLKVVKQCCATDGV-EAQYIKDEILPPFFKNFWNHRMAL--DR-R-NYRQLVDTTVE 129 (166)
Q Consensus 59 vm~il~rEF----~SPDeEMKkiVLkVv~qc~~t~gv-~~~yir~~i~~~FF~~FW~rR~Al--Dr-~-~~~~vv~TTv~ 129 (166)
+|+-+.|++ .|||++-|-++|..+... |. .+.|+ .||.- |=.|| |+ + -.-..|||-++
T Consensus 141 l~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~~~yv-----~PfLp----rL~aLL~D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 141 LMASIVRDFMSMLSSKNREDKLTALNFIEAM----GENSFKYV-----NPFLP----RIINLLHDGDEIVRASAVEALVH 207 (253)
T ss_dssp HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTTHHHH-----GGGHH----HHHGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccCcccc-----CcchH----HHHHHHcCcchhhhHHHHHHHHH
Confidence 445566664 699999999999877632 32 34453 34443 22233 44 2 33456799999
Q ss_pred HHHhhC-HHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 130 IANKVG-ASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 130 lA~Kvg-~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
||.+-. ..-++...+..++|.||-..+-|.|++.|+
T Consensus 208 lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 208 LATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 997543 567888999999999999999999998875
No 58
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=76.36 E-value=25 Score=27.40 Aligned_cols=132 Identities=13% Similarity=0.165 Sum_probs=80.0
Q ss_pred HHHH-HHHhhhcchHHHHHHHHhhhcccCChhH-----HhhhHHHHHHHHHhh-cCCCcHHHHHHHHHHHHhhhcccCcc
Q psy10447 20 PLWK-GIRTHRGKGLAAFLKAIGYLIPLMDAEY-----ANYYTKEVMLILIRE-FQSPDEEMKKIVLKVVKQCCATDGVE 92 (166)
Q Consensus 20 plW~-Gir~hRGK~LAaFLKaiG~IIPLMD~ey-----A~yYt~evm~il~rE-F~SPDeEMKkiVLkVv~qc~~t~gv~ 92 (166)
++|+ .+.--.-.+...-|.|+..++..+.+.+ ...+...+++.|+.- +.++..-.|...+..+-.++...+..
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH
Confidence 3443 3333334555666778888888776543 334556777777755 89999988888777776666544432
Q ss_pred hhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH---hhCHH-----H----HHHHhhcccccchHHHHHHHHH
Q psy10447 93 AQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN---KVGAS-----E----IINRVVDDLKDENEQYRKMVME 160 (166)
Q Consensus 93 ~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~---Kvg~~-----~----il~~iv~~lKDesE~~R~M~~e 160 (166)
.. +-+.+++ +++.+|-+...++..-|++ .+|.. . ++..+...|-|.|..-|.-+++
T Consensus 138 ~~-~~e~l~~-----------~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~ 205 (278)
T 4ffb_C 138 TQ-SVELVIP-----------FFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMN 205 (278)
T ss_dssp HH-HHHHHGG-----------GGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHH
T ss_pred HH-HHHHHHH-----------HHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 22 2234443 3345566666666555553 34432 2 3444555678999999999988
Q ss_pred HHh
Q psy10447 161 SIE 163 (166)
Q Consensus 161 ti~ 163 (166)
++-
T Consensus 206 l~~ 208 (278)
T 4ffb_C 206 LIV 208 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 59
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=75.94 E-value=1.4 Score=27.15 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHH
Q psy10447 59 VMLILIREFQSPDEEMKKIVLKVVK 83 (166)
Q Consensus 59 vm~il~rEF~SPDeEMKkiVLkVv~ 83 (166)
+|..++.=|++-||||||++.|-..
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 7888899999999999999988644
No 60
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=75.92 E-value=22 Score=32.61 Aligned_cols=70 Identities=6% Similarity=-0.034 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhh-HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhc
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYY-TKEVMLILIREFQSPDEEMKKIVLKVVKQCCA 87 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yY-t~evm~il~rEF~SPDeEMKkiVLkVv~qc~~ 87 (166)
++.+|..-++..--.....-+.|++.|..- +++....+ ...+++.|+.-..+++.+.+..++.++...+.
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 345555555444333333344455544322 12333333 34677889999999999999988888876654
No 61
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=74.06 E-value=53 Score=30.01 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=77.0
Q ss_pred hhhhhhhHHHHHHHHhh-----hcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCC--CcHHHHHHHHHHHHh
Q psy10447 12 ESFDSVLKPLWKGIRTH-----RGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS--PDEEMKKIVLKVVKQ 84 (166)
Q Consensus 12 EsFd~VL~plW~Gir~h-----RGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~S--PDeEMKkiVLkVv~q 84 (166)
+.++.+++.+-..+..+ -=+.+-|-|-|+|+|.--++.+.. -+-.++|. +.-++.+ |+.-.|.+.+.++-+
T Consensus 455 ~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~ 532 (971)
T 2x1g_F 455 YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMR-VLAEIPYEKLNVKLLGTALETMGS 532 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHH-HHHhcCccccCHHHHHHHHHHHHH
Confidence 44555555555555432 123567788889999877765442 35566787 5567774 488899999999998
Q ss_pred hhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC------HHHHHHHhhccccc--chHHHHH
Q psy10447 85 CCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG------ASEIINRVVDDLKD--ENEQYRK 156 (166)
Q Consensus 85 c~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg------~~~il~~iv~~lKD--esE~~R~ 156 (166)
.+.--+-.++|+ ..+++-+|+++ + .+....-..+-..|++..+ +..+++.+..-+.. -...-|.
T Consensus 533 ~~~~l~~~~~~l-~~vl~~l~~~l-~------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~ 604 (971)
T 2x1g_F 533 YCNWLMENPAYI-PPAINLLVRGL-N------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSV 604 (971)
T ss_dssp THHHHC----CH-HHHHHHHHHHH-H------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHH
T ss_pred HHHHHhcCHHHH-HHHHHHHHHHh-C------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHH
Confidence 876544456775 56777666655 2 2222222333333443322 22344444444443 2345566
Q ss_pred HHHHHHhh
Q psy10447 157 MVMESIEK 164 (166)
Q Consensus 157 M~~eti~k 164 (166)
.+++||..
T Consensus 605 ~~~~ai~~ 612 (971)
T 2x1g_F 605 RLMFSIGK 612 (971)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666643
No 62
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=74.03 E-value=21 Score=29.35 Aligned_cols=130 Identities=7% Similarity=0.050 Sum_probs=80.1
Q ss_pred hHHHHHHHHhhhcccCC-hhHHh-hhHHHHHHHHHh-hcCCCcHHHHHHHHHHHHhhhcccC-cchhhHhhhhchHHHHH
Q psy10447 32 GLAAFLKAIGYLIPLMD-AEYAN-YYTKEVMLILIR-EFQSPDEEMKKIVLKVVKQCCATDG-VEAQYIKDEILPPFFKN 107 (166)
Q Consensus 32 ~LAaFLKaiG~IIPLMD-~eyA~-yYt~evm~il~r-EF~SPDeEMKkiVLkVv~qc~~t~g-v~~~yir~~i~~~FF~~ 107 (166)
.+..-+.|++.+--|.+ .+.|+ +.....++.|+. -.+||+++.|.-.+.++-+++...- .....++...+|++.+-
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 34556666666666664 34555 556677888888 9999999999999999999987543 23333345677776544
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHH-------HhhCHHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 108 FWNHRMALDRRNYRQLVDTTVEIA-------NKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 108 FW~rR~AlDr~~~~~vv~TTv~lA-------~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
.=. ..+....+..+.|-..|+ +.+-....+.-|+.-|++.+...|+-+.-++..
T Consensus 133 L~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~ 193 (296)
T 1xqr_A 133 LDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 193 (296)
T ss_dssp HHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred Hcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 310 011111222222222222 112223356677777888999999999888765
No 63
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=69.03 E-value=76 Score=29.70 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=55.8
Q ss_pred chHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHh--hcCCCcHH---HHHHHHHHHHhhhcccCcchhhHhhhhchHHH
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIR--EFQSPDEE---MKKIVLKVVKQCCATDGVEAQYIKDEILPPFF 105 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~r--EF~SPDeE---MKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF 105 (166)
+.+.|.|-|+|+|---|..+..+-|..+|+..|.. ++.++++. .+.+.+-++-+.+.--.-.++|+ ..+++.+|
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~~ll 546 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILKLF 546 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence 45778899999998777766556678888888876 55554221 22234445554432211245665 45666666
Q ss_pred HHHHHHHhhh-hhhhhhHHHHHHHHHHHhhC
Q psy10447 106 KNFWNHRMAL-DRRNYRQLVDTTVEIANKVG 135 (166)
Q Consensus 106 ~~FW~rR~Al-Dr~~~~~vv~TTv~lA~Kvg 135 (166)
+.+ .- +.+.......+-..|+++.+
T Consensus 547 ~~l-----~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 547 EFM-----HETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHT-----TSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHh-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 643 11 13333444445555555544
No 64
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=66.77 E-value=12 Score=34.83 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=57.2
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHh
Q psy10447 18 LKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIK 97 (166)
Q Consensus 18 L~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir 97 (166)
-+-||.+|.+.|...|+.||.|+| ||..-+.-| +.|.+.|.|=|.=|... ..+....+||.+.- -
T Consensus 493 a~nL~~aIe~sk~~~l~r~l~aLG--I~~vG~~~a--------~~La~~f~sl~~l~~a~----~e~l~~i~giG~~~-A 557 (586)
T 4glx_A 493 AQNVVNALEKAKETTFARFLYALG--IREVGEATA--------AGLAAYFGTLEALEAAS----IEELQKVPDVGIVV-A 557 (586)
T ss_dssp HHHHHHHHHHHTBCCHHHHHHHTT--CTTCCHHHH--------HHHHHHHCSHHHHHHCC----HHHHTTSTTCCHHH-H
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcC--CCchhHHHH--------HHHHHHcCCHHHHHccC----HHHHhcCCCccHHH-H
Confidence 346889999999999999999999 676654433 46777777644323222 34677889999963 3
Q ss_pred hhhchHHHHHHHHHHhh
Q psy10447 98 DEILPPFFKNFWNHRMA 114 (166)
Q Consensus 98 ~~i~~~FF~~FW~rR~A 114 (166)
+. +-.||..=||+.+.
T Consensus 558 ~s-i~~ff~~~~n~~~i 573 (586)
T 4glx_A 558 SH-VHNFFAEESNRNVI 573 (586)
T ss_dssp HH-HHHHHHSHHHHHHH
T ss_pred HH-HHHHHcCHHHHHHH
Confidence 44 44799888887654
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=65.40 E-value=62 Score=27.33 Aligned_cols=156 Identities=8% Similarity=0.108 Sum_probs=96.7
Q ss_pred cCCcchhhh--hhhhHHHHHHHHhhh-cchHHHHHHHHhhhcccCChhHHhhhH------HHHHHHHHhhcCCCcHHHHH
Q psy10447 6 CHTLSIESF--DSVLKPLWKGIRTHR-GKGLAAFLKAIGYLIPLMDAEYANYYT------KEVMLILIREFQSPDEEMKK 76 (166)
Q Consensus 6 s~PYGIEsF--d~VL~plW~Gir~hR-GK~LAaFLKaiG~IIPLMD~eyA~yYt------~evm~il~rEF~SPDeEMKk 76 (166)
..|-|++.+ ..++++|..-++... -..+.+-..|++.|.-= +..++.+.. ....+.|++=.+++|++.|+
T Consensus 271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~-~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~ 349 (457)
T 1xm9_A 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS-KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVR 349 (457)
T ss_dssp SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHH
T ss_pred cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC-cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHH
Confidence 346677765 456777777776542 34555556666666421 223333331 23567899999999999999
Q ss_pred HHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHH-----------HHHHHhhCHHHHHHHhhc
Q psy10447 77 IVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTT-----------VEIANKVGASEIINRVVD 145 (166)
Q Consensus 77 iVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TT-----------v~lA~Kvg~~~il~~iv~ 145 (166)
.....+.+++..+.+ .+-+.+..+|+.-+-.= ..-.+++....++..+ .+.++.+--...++.|+.
T Consensus 350 ~A~~aL~nls~~~~~-~~~i~~~~i~~Lv~lL~--~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~ 426 (457)
T 1xm9_A 350 SGASLLSNMSRHPLL-HRVMGNQVFPEVTRLLT--SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426 (457)
T ss_dssp HHHHHHHHHHTSGGG-HHHHHHHTHHHHHHTTT--SCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHH-HHHHHHhhhHHHHHhcc--CCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 999999999876543 33456667777654311 0000111111222111 234555666678889999
Q ss_pred ccccc-hHHHHHHHHHHHhhc
Q psy10447 146 DLKDE-NEQYRKMVMESIEKT 165 (166)
Q Consensus 146 ~lKDe-sE~~R~M~~eti~kv 165 (166)
-++.+ |+.-++.|...++.+
T Consensus 427 L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 427 LCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHCTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCcHHHHHHHHHHHHHH
Confidence 99999 999999998888753
No 66
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=65.17 E-value=6.7 Score=27.20 Aligned_cols=90 Identities=9% Similarity=0.131 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCH
Q psy10447 57 KEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGA 136 (166)
Q Consensus 57 ~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~ 136 (166)
.+-.+.|..-.++||.+.|...+..+.+.-.. . ++...+. ..|. .-.+-...+..-.++|.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-~----------~~~L~~~------L~d~--~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-A----------FEPLLES------LSNE--DWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-T----------HHHHHHG------GGCS--CHHHHHHHHHHHGGGCS
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-H----------HHHHHHH------HcCC--CHHHHHHHHHHHHhcCC
Confidence 34455677888899998888777666544221 1 1222221 1121 12333444444555888
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 137 SEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 137 ~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
...+..|+..|+|+++..|..+++++.++
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999999765
No 67
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=62.68 E-value=12 Score=29.36 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=52.9
Q ss_pred HhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC
Q psy10447 64 IREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG 135 (166)
Q Consensus 64 ~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg 135 (166)
.+..+++|++ |.....-+.+++..=++.+.-+ ...--||+.|+.++.-.+.+....|.-|.+-||-|+.
T Consensus 18 ~~~~~~~~~~-R~~~~~~i~~v~~~l~L~~~t~--~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~E 86 (235)
T 1zp2_A 18 SLEPTCLSKD-TIYQWKVVQTFGDRLRLRQRVL--ATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVE 86 (235)
T ss_dssp TSSCCCSCHH-HHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHCCcchhHH-HHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccc
Confidence 4455778887 8888899999999999988765 4445699999987754441456677799999999984
No 68
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=61.65 E-value=48 Score=31.90 Aligned_cols=123 Identities=13% Similarity=0.281 Sum_probs=77.4
Q ss_pred chHHHHHHHHhhhcccCChhHHh-hhHHHHHHHHHhhc-CCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHH
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYAN-YYTKEVMLILIREF-QSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNF 108 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~-yYt~evm~il~rEF-~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~F 108 (166)
--|-.++.++..+.|++-.--|. |=+....+.+.+.. +.++++.-..+|+.+...|..+.. .+|+-+..+ +
T Consensus 227 ~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~c-R~~I~~~~~-~----- 299 (778)
T 3opb_A 227 DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETM-RTYITENYL-Q----- 299 (778)
T ss_dssp CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHH-HHHHHHHHH-H-----
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHH-HHHHHHhHH-H-----
Confidence 45667788888999996322233 33444455555555 458888999999999998888777 566544333 2
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHH--------hhCHHHHHHHhhcccccchHHHHHHHHHHHh
Q psy10447 109 WNHRMALDRRNYRQLVDTTVEIAN--------KVGASEIINRVVDDLKDENEQYRKMVMESIE 163 (166)
Q Consensus 109 W~rR~AlDr~~~~~vv~TTv~lA~--------Kvg~~~il~~iv~~lKDesE~~R~M~~eti~ 163 (166)
|-.+..-++ ..+ +-+.|-|++ +.-..+..+.++..|.++...-|+.++|++.
T Consensus 300 ~L~~~l~~~-~ir--~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLa 359 (778)
T 3opb_A 300 LLERSLNVE-DVQ--IYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALA 359 (778)
T ss_dssp HHHHHTTSG-GGH--HHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHhccH-HHH--HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 433332222 122 144555554 2334567788888888866555999999875
No 69
>2ouw_A Alkylhydroperoxidase AHPD core; YP_425393.1, carboxymuconolactone decarboxylase family, structural genomics, joint for structural genomics; 1.95A {Rhodospirillum rubrum} SCOP: a.152.1.4
Probab=59.55 E-value=42 Score=23.82 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=44.3
Q ss_pred hcccCChhHHh--hhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhh-hhchHHHHHHHHH-------H
Q psy10447 43 LIPLMDAEYAN--YYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKD-EILPPFFKNFWNH-------R 112 (166)
Q Consensus 43 IIPLMD~eyA~--yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~-~i~~~FF~~FW~r-------R 112 (166)
-||..+++-+. =..+++..-+.+.|.+| -.|..++. .--|+.|+.||.. .
T Consensus 4 ri~~~~~~~a~~~~~~~~~~~~~~~~~g~g--------------------~vpn~~~~la~~P~~~~~~~~~~~~~~~~~ 63 (138)
T 2ouw_A 4 TVRLLDDAEISTLPEVKAVFDDIRATRGSD--------------------FVNNIWRGLANDPALLKRTWEQVKTVMVGE 63 (138)
T ss_dssp SSCCCCHHHHHTCHHHHHHHHHHHHHHSSS--------------------CCCHHHHHHTTSHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCHHhCCCCHHHHHHHHHHHHHHCCC--------------------CChHHHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence 36777777777 77777777666655432 23332221 2346777777752 3
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhCHHHHHHH
Q psy10447 113 MALDRRNYRQLVDTTVEIANKVGASEIINR 142 (166)
Q Consensus 113 ~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~ 142 (166)
.++|++ .+.+|...| |+-.||.+.+..
T Consensus 64 ~~L~~~-~~Eli~l~v--s~~n~C~yC~~~ 90 (138)
T 2ouw_A 64 GALDPL-TREMIYLAV--STANSCSYCAHS 90 (138)
T ss_dssp SSSCHH-HHHHHHHHH--HHHTTCHHHHHH
T ss_pred CCCCHH-HHHHHHHHH--HHHcCCHHHHHH
Confidence 346665 345554443 666688877754
No 70
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=57.33 E-value=5 Score=33.64 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 107 NFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 107 ~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
++|+||.|++-+.- -+. ....|.+...++.-|-+..-|+++-.||-+-.+++.
T Consensus 152 n~~VRR~Ase~~rp----W~~-~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 152 NLHTRRAATEGLRI----WTN-RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp SHHHHHHHHHHTCS----GGG-STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhHH----Hhc-cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 79999999987422 000 124467777777777777778888888888777764
No 71
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=56.61 E-value=19 Score=34.37 Aligned_cols=119 Identities=12% Similarity=0.158 Sum_probs=77.3
Q ss_pred HHHhhhcccC-ChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhh
Q psy10447 38 KAIGYLIPLM-DAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALD 116 (166)
Q Consensus 38 KaiG~IIPLM-D~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlD 116 (166)
-|+..|.|.. |.-.+-+-+...++.|++=.+|+|+..+...+..+.+++.. .-..+++++.=+ |....++.... +
T Consensus 269 ~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll~s~~--~ 344 (810)
T 3now_A 269 VAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGV-DILKRLYHSKN--D 344 (810)
T ss_dssp HHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHTTCSC--H
T ss_pred HHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHHcCCC--H
Confidence 3455556654 22334444779999999999999999999999999997665 556777766555 66666663111 1
Q ss_pred hhhhhHHHHHHHHHHHh------------h--C-HHHHHHHhhcccccc--hHHHHHHHHHHHhh
Q psy10447 117 RRNYRQLVDTTVEIANK------------V--G-ASEIINRVVDDLKDE--NEQYRKMVMESIEK 164 (166)
Q Consensus 117 r~~~~~vv~TTv~lA~K------------v--g-~~~il~~iv~~lKDe--sE~~R~M~~eti~k 164 (166)
+... .+.+-|++= + | ...++..++..|.++ +..-|+.+++++.-
T Consensus 345 ~vr~----~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLay 405 (810)
T 3now_A 345 GIRV----RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAY 405 (810)
T ss_dssp HHHH----HHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 1111 333444431 1 2 245677777777777 67789999998864
No 72
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=56.06 E-value=22 Score=28.99 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=52.0
Q ss_pred hcCCCcHH--HHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCH
Q psy10447 66 EFQSPDEE--MKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGA 136 (166)
Q Consensus 66 EF~SPDeE--MKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~ 136 (166)
++-|+++| ||.+...-+.+++..=++.+.-+ ...--+|+.|+.+..-. +.....|.-|.+-||-|+--
T Consensus 32 ~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~--~tA~~~~~RF~~~~s~~-~~~~~lva~acLfLA~K~EE 101 (285)
T 3rgf_B 32 KFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVI--ATATVYFKRFYARYSLK-SIDPVLMAPTCVFLASKVEE 101 (285)
T ss_dssp GTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHSCTT-TSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCch-hcCHHHHHHHHHHHHHhhhc
Confidence 45778777 77888999999999999988866 33446999999876543 44556667899999999853
No 73
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=52.42 E-value=22 Score=25.94 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=49.2
Q ss_pred cchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcc--cCcchhhHhhhhchHHHHH
Q psy10447 30 GKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT--DGVEAQYIKDEILPPFFKN 107 (166)
Q Consensus 30 GK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t--~gv~~~yir~~i~~~FF~~ 107 (166)
.+.+-=|++|+.-=.=|||++ +-+-.+.+.-....+ ..|+++++.+.+++.+|... .|-++ -+-.-.+++.
T Consensus 45 d~~~kC~~~C~~~K~gl~d~~--G~~~~d~~~~~~~~~-~~d~~~~~~~~~ii~~C~~~~~~~~d~----Ce~A~~~~~C 117 (137)
T 1dqe_A 45 NRETGCAIMCLSTKLNMLDPE--GNLHHGNAMEFAKKH-GADETMAQQLIDIVHGCEKSTPANDDK----CIWTLGVATC 117 (137)
T ss_dssp CHHHHHHHHHHHHHTTCBCTT--SSBCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHSCCCSSH----HHHHHHHHHH
T ss_pred CcccCcHHHHHHHHcCCcCCC--CCCcHHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCCCCCCH----HHHHHHHHHH
Confidence 345667999999989999864 223333333333556 56788999999999999875 44332 1333367777
Q ss_pred HHHH
Q psy10447 108 FWNH 111 (166)
Q Consensus 108 FW~r 111 (166)
|-..
T Consensus 118 ~~~~ 121 (137)
T 1dqe_A 118 FKAE 121 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 74
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=51.20 E-value=16 Score=29.69 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=26.9
Q ss_pred HHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHh
Q psy10447 126 TTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIE 163 (166)
Q Consensus 126 TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~ 163 (166)
....|++---+.+|+++++...+|.+..+|+..++.+.
T Consensus 274 ~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~ 311 (333)
T 3bwt_A 274 GIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVA 311 (333)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHG
T ss_pred HHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 34567777777788888888777777667776666653
No 75
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=50.43 E-value=84 Score=26.27 Aligned_cols=142 Identities=7% Similarity=0.079 Sum_probs=77.8
Q ss_pred hhHHHHHHHHh-hhcchHHHHHHHHhhhcccCChhHHhhh-HHHHHHHHHhhcCCCcH----HHHHHHHHHHHhhhc---
Q psy10447 17 VLKPLWKGIRT-HRGKGLAAFLKAIGYLIPLMDAEYANYY-TKEVMLILIREFQSPDE----EMKKIVLKVVKQCCA--- 87 (166)
Q Consensus 17 VL~plW~Gir~-hRGK~LAaFLKaiG~IIPLMD~eyA~yY-t~evm~il~rEF~SPDe----EMKkiVLkVv~qc~~--- 87 (166)
.+.||-+-+.+ .....+..-+.|++.|--.=|..-...- ....++.|++-..++++ +.++-...++.+++.
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a 250 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence 45666665443 2334555555666666432222112222 24567788888887765 588888888888774
Q ss_pred -ccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh----------hCHHHHHHHhhcccccchHHHHH
Q psy10447 88 -TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK----------VGASEIINRVVDDLKDENEQYRK 156 (166)
Q Consensus 88 -t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K----------vg~~~il~~iv~~lKDesE~~R~ 156 (166)
++.-...-+....+|+..+-.= ........+++--|++= +.-...+.-|+.-|++.++.-|+
T Consensus 251 ~~~~~~~~i~~~g~i~~Lv~lL~-------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 251 TNEDHRQILRENNCLQTLLQHLK-------SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp TCHHHHHHHHTTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHc-------CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 3332222223335555544321 11111222333223322 22223467788888999999999
Q ss_pred HHHHHHhhc
Q psy10447 157 MVMESIEKT 165 (166)
Q Consensus 157 M~~eti~kv 165 (166)
.+..|+..+
T Consensus 324 ~A~~aL~nL 332 (354)
T 3nmw_A 324 GSAAALRNL 332 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 76
>2wcj_A General odorant-binding protein 1; transport protein, olfaction, transport, disulfide bond, insect pheremone, sensory transduction; HET: M21; 1.40A {Bombyx mori} PDB: 2wc6_A* 2wch_A* 2wck_A 2wcl_A* 2wcm_A* 2wc5_A*
Probab=50.31 E-value=24 Score=25.99 Aligned_cols=75 Identities=13% Similarity=0.192 Sum_probs=49.7
Q ss_pred chHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcc--cCcchhhHhhhhchHHHHHH
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT--DGVEAQYIKDEILPPFFKNF 108 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t--~gv~~~yir~~i~~~FF~~F 108 (166)
+.+-=|++|+.-=.=|||++ +-+-.+.+.-....+ ..|+++++.+.+++.+|... +|-++ -+-.-.+++.|
T Consensus 46 ~~~KC~~~C~~~K~gl~d~~--G~~~~d~~~~~~~~~-~~d~~~~~~~~~ii~~C~~~~~~g~d~----Ce~A~~~~~C~ 118 (141)
T 2wcj_A 46 RELGCAIICMSNKFSLMDDD--VRMHHVNMDEYIKSF-PNGQVLAEKMVKLIHNCEKQFDTETDD----CTRVVKVAACF 118 (141)
T ss_dssp HHHHHHHHHHHHHTTCBCTT--SSBCHHHHHHHHHTS-TTTHHHHHHHHHHHHHHHHHTTTCCCH----HHHHHHHHHHH
T ss_pred cccCCHHHHHHHHcCCcCCC--CCCcHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCccCCCCCH----HHHHHHHHHHH
Confidence 45667999999989999864 233333333334556 55778999999999999875 44432 23334678887
Q ss_pred HHHH
Q psy10447 109 WNHR 112 (166)
Q Consensus 109 W~rR 112 (166)
-...
T Consensus 119 ~~~~ 122 (141)
T 2wcj_A 119 KEDS 122 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 77
>1qwv_A PBP, pheromone-binding protein; APOLPBP, hexahelical fold, PBP fold, transport protein; NMR {Antheraea polyphemus} SCOP: a.39.2.1 PDB: 1two_A 2jpo_A 2kph_A
Probab=49.50 E-value=12 Score=28.02 Aligned_cols=59 Identities=8% Similarity=0.170 Sum_probs=39.8
Q ss_pred chHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcc--cCcc
Q psy10447 31 KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT--DGVE 92 (166)
Q Consensus 31 K~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t--~gv~ 92 (166)
+.+-=|++|+--=.=+||++- -+-.+.+.-....+ .+|+++.+.+..++.+|... .|-+
T Consensus 46 ~~~KC~~~C~~~K~gl~d~dG--~~~~e~~~e~~k~~-~~~~~~~~~~~~ii~~C~~~~~~g~D 106 (142)
T 1qwv_A 46 RLAGCAINCLATKLDVVDPDG--NLHHGNAKDFAMKH-GADETMAQQLVDIIHGCEKSAPPNDD 106 (142)
T ss_dssp HHHHHHHTTHHHHHSCCSSSS--SCCCHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred cccCcHHHHHHHHhCCCCCCC--CCcHHHHHHHHHhc-CCcHHHHHHHHHHHHhccCcCCCCCC
Confidence 445568888888888887642 22222222333456 77899999999999999875 5443
No 78
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=46.83 E-value=28 Score=27.28 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC
Q psy10447 72 EEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG 135 (166)
Q Consensus 72 eEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg 135 (166)
..||+....-+.+++..=++.++-+ ...--+|+.|+.++. ..+.....+.-|.+-||-|+.
T Consensus 38 ~~~R~~~~~~i~~v~~~l~l~~~t~--~~A~~~~dRf~~~~~-~~~~~~qlv~~acL~lA~K~e 98 (258)
T 2i53_A 38 ARYRREGARFIFDVGTRLGLHYDTL--ATGIIYFHRFYMFHS-FKQFPRYVTGACCLFLAGKVE 98 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHTTTSC-TTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHH--HHHHHHHHHHHHhCC-hhhcCHHHHHHHHHHHHHccc
Confidence 3688999999999999999988776 334459999997764 344456666689999999986
No 79
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=45.05 E-value=26 Score=26.88 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhh
Q psy10447 57 KEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQY 95 (166)
Q Consensus 57 ~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~y 95 (166)
.|||..|-+.|+..+...|--.|++++-||... .+.+
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G--s~~f 84 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS--GSEF 84 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS--CHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC--CHHH
Confidence 799999999999999999999999999998643 3544
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=44.95 E-value=33 Score=29.52 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=57.8
Q ss_pred HhhcCCCcHHHHH---HHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh--CHHH
Q psy10447 64 IREFQSPDEEMKK---IVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKV--GASE 138 (166)
Q Consensus 64 ~rEF~SPDeEMKk---iVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kv--g~~~ 138 (166)
.|.|++|.-+-|| ++-|++- ..+.|-. +=..+.-.=||. =+.=++++.-..|++++-....=.|. .+--
T Consensus 31 ~r~fn~~~~~~~kc~~~l~kll~--l~~~G~~--f~~~e~t~lf~~--v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iL 104 (355)
T 3tjz_B 31 ARVFNETPINPRKCAHILTKILY--LINQGEH--LGTTEATEAFFA--MTKLFQSNDPTLRRMCYLTIKEMSCIAEDVII 104 (355)
T ss_dssp GGGTTSSSCCHHHHHHHHHHHHH--HHHHTCC--CCHHHHHHHHHH--HHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGG
T ss_pred HHHhcCCCCcHHHHHHHHHHHHH--HHHCCCC--CchhHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5899998433332 6777776 3344421 111233333442 12334555556666765544433233 3345
Q ss_pred HHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 139 IINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 139 il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
++..|..|+.|.|+-+|-+|+.|+.+|
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I 131 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQI 131 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcC
Confidence 678888999999999999999998876
No 81
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=44.78 E-value=31 Score=28.06 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=47.0
Q ss_pred hhhhhhhHHHHHHHHh-----hhcc-hHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcC--CCcHHHHHHHHHHHH
Q psy10447 12 ESFDSVLKPLWKGIRT-----HRGK-GLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQ--SPDEEMKKIVLKVVK 83 (166)
Q Consensus 12 EsFd~VL~plW~Gir~-----hRGK-~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~--SPDeEMKkiVLkVv~ 83 (166)
++|=+-+.-|...+|+ |-|+ .|++|||.||.= ..|++..-..+|. +||.--|+. -==|+
T Consensus 16 ~~fPpCM~~l~~~Lr~~~hL~h~gR~ql~lFLkgiGls------------~ee~l~f~r~~F~k~~~d~F~K~y-~Y~Ir 82 (194)
T 3lgb_A 16 SNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLS------------ADEALKFWSEAFTNMTMEKFNKEY-RYSFR 82 (194)
T ss_dssp TTCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHSTTSCHHHHHHHT-HHHHH
T ss_pred ccCcHHHHHHHHHHHcCCCCCchhHHHHHHHHHhCCCC------------HHHHHHHHHHHcccCChhhhccce-eeeee
Confidence 6788888999999997 6676 699999999953 3567777777887 555444443 33456
Q ss_pred hhhcccC
Q psy10447 84 QCCATDG 90 (166)
Q Consensus 84 qc~~t~g 90 (166)
-+-+-+|
T Consensus 83 H~yG~eG 89 (194)
T 3lgb_A 83 HNYGLEG 89 (194)
T ss_dssp HHTTCST
T ss_pred eecCCCC
Confidence 6666666
No 82
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=44.56 E-value=7.2 Score=30.21 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCccccCCcchhhhhhhhHHHHHHHHhhhcchHHHHHHHHhhh
Q psy10447 1 MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYL 43 (166)
Q Consensus 1 ~~~~as~PYGIEsFd~VL~plW~Gir~hRGK~LAaFLKaiG~I 43 (166)
|.+||.+-|-.+.|..|++-||+-+..+.||.=-.-+||+--|
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lL 74 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLL 74 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHH
Confidence 4578888899999999999999999999888777778887655
No 83
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=44.14 E-value=1.1e+02 Score=23.89 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcccCChhHHhhh---HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccC
Q psy10447 34 AAFLKAIGYLIPLMDAEYANYY---TKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDG 90 (166)
Q Consensus 34 AaFLKaiG~IIPLMD~eyA~yY---t~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~g 90 (166)
-.+++|+..| |+-.+.--+ ..+.+..|..-+.||...+|+.|+.++--.|...+
T Consensus 72 ~~~l~CLkal---mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 72 HEIIRCLKAF---MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp HHHHHHHHHH---TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHH---hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 3456666655 554432221 12356788899999999999999999987776654
No 84
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=42.24 E-value=23 Score=25.36 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=39.4
Q ss_pred cch--hhhhhhhHHHHHHHHhhhcch-----HHHHHHHHhhhcccCChhHHhhhHHH
Q psy10447 9 LSI--ESFDSVLKPLWKGIRTHRGKG-----LAAFLKAIGYLIPLMDAEYANYYTKE 58 (166)
Q Consensus 9 YGI--EsFd~VL~plW~Gir~hRGK~-----LAaFLKaiG~IIPLMD~eyA~yYt~e 58 (166)
+|| +-|+.+-+.|-..++.+=|.. .+|+-++++.|.-.|-..|..-|...
T Consensus 88 ~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~~~~~y~~~ 144 (146)
T 2vhb_A 88 AGVAAAHYPIVGQELLGAIKEVLGDAATDDILDAWGKAYGVIADVFIQVEADLYAQA 144 (146)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555 678888888888888887743 78889999999888877777777653
No 85
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=41.48 E-value=4.2 Score=37.18 Aligned_cols=40 Identities=35% Similarity=0.664 Sum_probs=34.2
Q ss_pred hhcccCChhHHhhhHHHHHHHHHhhcCCCcH----HHHHHHHHHHHhhhcccC
Q psy10447 42 YLIPLMDAEYANYYTKEVMLILIREFQSPDE----EMKKIVLKVVKQCCATDG 90 (166)
Q Consensus 42 ~IIPLMD~eyA~yYt~evm~il~rEF~SPDe----EMKkiVLkVv~qc~~t~g 90 (166)
..+||+|++.- .|-=.|.+++| |||+.+||=---||.|+|
T Consensus 372 ~~lPLvd~~~~---------lLPVHFl~~~E~g~e~~~~~ll~~~ld~~~t~~ 415 (454)
T 3zrh_A 372 TFLPLVDSERK---------LLHVHFLSAQELGNEEQQEKLLREWLDCCVTEG 415 (454)
T ss_dssp EEEESBCTTCC---------BCCBTTCCTTTCCCHHHHHHHHHHHSCEEECTT
T ss_pred eeeccccCcCC---------ccceeecchhhhhhhhHHHHHHHHHHHHhcccC
Confidence 46999999872 46668999988 999999999999999995
No 86
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein, all alpha, structural genomi NPPSFA; 1.90A {Thermus thermophilus} SCOP: a.152.1.4
Probab=41.12 E-value=9.4 Score=28.10 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=34.8
Q ss_pred hcccC-cchhhHhh--hhchHHHH--HHH-----HHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcc
Q psy10447 86 CATDG-VEAQYIKD--EILPPFFK--NFW-----NHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDD 146 (166)
Q Consensus 86 ~~t~g-v~~~yir~--~i~~~FF~--~FW-----~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~ 146 (166)
-..-| -.|+.++. +.-|++++ .|. .++.+||++ .+.+|..++..++ ||.+.+..=+..
T Consensus 33 ~~~~G~~vpn~~~~l~~~~P~~l~~~~~~~~~~~~~~g~Ld~k-~reLI~lavs~~n--gC~~Cl~~H~~~ 100 (137)
T 2cwq_A 33 AENLGEGLPRAIPLLAEKAPGLLLEHGRSWTYAMPEKGALDEK-TRTLILLGIALAT--GSEACVKAMAHR 100 (137)
T ss_dssp HHHHGGGCCTHHHHHHHHCHHHHHHHHHHHHHHSCTTCSSCHH-HHHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHCHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 33444 44555543 46788887 332 234568876 6777777776665 788777554433
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=41.05 E-value=1.5e+02 Score=24.46 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=80.4
Q ss_pred HHHHHhhhc--chHHHHHHHHhhhcccCCh-hH-Hhhh-HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhH
Q psy10447 22 WKGIRTHRG--KGLAAFLKAIGYLIPLMDA-EY-ANYY-TKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYI 96 (166)
Q Consensus 22 W~Gir~hRG--K~LAaFLKaiG~IIPLMD~-ey-A~yY-t~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yi 96 (166)
|-++|-+=. +++..-|..+..++-.|.. +| -+-| ..-+.|.|+--...+.|..|..+-.++++.+.. ..|.++
T Consensus 91 w~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v--~~~~~v 168 (266)
T 2of3_A 91 WCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV--VGPLKM 168 (266)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH--HCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH--CCHHHH
Confidence 666655421 3444445555555555522 22 2233 467889999999999999999999999887643 344443
Q ss_pred hhhhchHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHhhCH--HHHH---HHhhcccccchHHHHHHHHHHHhh
Q psy10447 97 KDEILPPFFKNFWNHRMALDRRNYRQLVDT---TVEIANKVGA--SEII---NRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 97 r~~i~~~FF~~FW~rR~AlDr~~~~~vv~T---Tv~lA~Kvg~--~~il---~~iv~~lKDesE~~R~M~~eti~k 164 (166)
=+-++..+ -.+|.|+-.+. -..+=++.|. .-.+ ..|...+-|.+..-|..|+.|+..
T Consensus 169 ~~~l~~g~-----------ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 169 TPMLLDAL-----------KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233 (266)
T ss_dssp HHHHHHGG-----------GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33333322 22344443332 3333345553 3345 778899999999999999998864
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=40.57 E-value=1.7e+02 Score=24.96 Aligned_cols=94 Identities=14% Similarity=0.225 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHH-HHHHHHHHhhC
Q psy10447 57 KEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLV-DTTVEIANKVG 135 (166)
Q Consensus 57 ~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv-~TTv~lA~Kvg 135 (166)
.+++.-+++=|+|+|-+.||.|.--++.++.+. .+=| ++-..|++ |-+....++ --++--=-++-
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~e~i---Lv~Nsl~k--------Dl~~~N~~iR~lALRtL~~I~ 132 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA---EDVI---IVTSSLTK--------DMTGKEDSYRGPAVRALCQIT 132 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS---SCGG---GGHHHHHH--------HHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH---HHHH---HHHHHHHh--------hcCCCcHhHHHHHHHHHhcCC
Confidence 356677889999999999999999999988771 2111 23333332 222111122 11222222344
Q ss_pred HHHHHHHhh----cccccchHHHHHHHHHHHhh
Q psy10447 136 ASEIINRVV----DDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 136 ~~~il~~iv----~~lKDesE~~R~M~~eti~k 164 (166)
..++++.+. .-|.|.+..-||-|+=++-+
T Consensus 133 ~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 133 DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLH 165 (355)
T ss_dssp CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 444455444 44559999999999877655
No 89
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=40.06 E-value=40 Score=28.67 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC
Q psy10447 72 EEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG 135 (166)
Q Consensus 72 eEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg 135 (166)
..||++...-+.+++..=++.++-+ ...--||+.|+.+..- .+.....|.-|.+-||-|+-
T Consensus 35 ~~~R~~~v~wI~ev~~~l~L~~~t~--~tAv~~~dRFl~~~sv-~~~~~qlva~acLfLA~K~E 95 (358)
T 2pk2_A 35 LSYRQQAANLLQDMGQRLNVSQLTI--NTAIVYMHRFYMIQSF-TRFPGNSVAPAALFLAAKVE 95 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHH--HHHHHHHHHHTTTSCT-TTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHhcCCc-ccccHHHHHHHHHHHHHhhc
Confidence 4688999999999999999988766 4444699999977643 44456677799999999985
No 90
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=38.77 E-value=1.8e+02 Score=24.76 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=36.3
Q ss_pred HHHHHHhhhcccCChhHHhhh---HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccC
Q psy10447 35 AFLKAIGYLIPLMDAEYANYY---TKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDG 90 (166)
Q Consensus 35 aFLKaiG~IIPLMD~eyA~yY---t~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~g 90 (166)
.+++|+..| |.-.+.-.+ ..+.+..|.+-..|+..-+|+.+++++--.|.-.+
T Consensus 139 ~~l~CLkal---mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~ 194 (383)
T 3eg5_B 139 EIIRCLKAF---MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 194 (383)
T ss_dssp HHHHHHHHH---TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHH---hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC
Confidence 456666655 443321111 12356788889999999999999999998777654
No 91
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=38.42 E-value=45 Score=26.20 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCH
Q psy10447 73 EMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGA 136 (166)
Q Consensus 73 EMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~ 136 (166)
.||++...-+.+++..=++.++-+ ...--+|+.|+.+..- .+.....+.-|.+-||-|+.-
T Consensus 29 ~~R~~~~~~i~~v~~~l~l~~~t~--~~A~~~~dRf~~~~~~-~~~~~qlv~~acL~lA~K~EE 89 (257)
T 2ivx_A 29 SCRQQAANLIQEMGQRLNVSQLTI--NTAIVYMHRFYMHHSF-TKFNKNIISSTALFLAAKVEE 89 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHTTTSCT-TTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHhhCCh-hhhCHHHHHHHHHHHHhcccc
Confidence 588899999999999999988765 4444699999977643 344566667899999999853
No 92
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=37.44 E-value=1.2e+02 Score=22.02 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCcchhhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhH--------HHHHHHHH-hhcCCCcHHHHHH
Q psy10447 7 HTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYT--------KEVMLILI-REFQSPDEEMKKI 77 (166)
Q Consensus 7 ~PYGIEsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt--------~evm~il~-rEF~SPDeEMKki 77 (166)
.++..+.+...++-++..+..|.. |-.|.-|+=..++.+||. ..|-.-|. +++.|++ |...-
T Consensus 15 ~~~~~~~l~~~~~~il~~l~~~~~--------s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D 85 (135)
T 3mb3_A 15 QSYDIQAWKKQCEELLNLIFQCED--------SEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPM-ELCKD 85 (135)
T ss_dssp --CCSSTHHHHHHHHHHHHHHSGG--------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHhCCC--------ChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHH-HHHHH
Confidence 345677888889999999999876 445555553345677775 23333333 4566664 68888
Q ss_pred HHHHHHhhhcccCc--chhhHhhhhchHHHHHHHHHHh
Q psy10447 78 VLKVVKQCCATDGV--EAQYIKDEILPPFFKNFWNHRM 113 (166)
Q Consensus 78 VLkVv~qc~~t~gv--~~~yir~~i~~~FF~~FW~rR~ 113 (166)
|-.+..+|..--+- +.-|---..+..+|..-|..-.
T Consensus 86 ~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~ 123 (135)
T 3mb3_A 86 VRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVL 123 (135)
T ss_dssp HHHHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987765 4444445678888888886543
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=37.01 E-value=1.5e+02 Score=26.89 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHh--hhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcC-----CCcHHHHHH
Q psy10447 14 FDSVLKPLWKGIRT--HRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQ-----SPDEEMKKI 77 (166)
Q Consensus 14 Fd~VL~plW~Gir~--hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~-----SPDeEMKki 77 (166)
+++++.-|-.-+.+ ..-+....+++|+|.++--+.++...-|...+|..+...++ .+|++-++.
T Consensus 566 ~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 636 (963)
T 2x19_B 566 AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLA 636 (963)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34444444444443 12357788999999999777656666677888887776663 246777664
No 94
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=36.93 E-value=1.4e+02 Score=26.18 Aligned_cols=142 Identities=7% Similarity=0.083 Sum_probs=75.4
Q ss_pred hhHHHHHHHHh-hhcchHHHHHHHHhhhcccCChhHHhhh-HHHHHHHHHhhcCCCcH----HHHHHHHHHHHhhhc---
Q psy10447 17 VLKPLWKGIRT-HRGKGLAAFLKAIGYLIPLMDAEYANYY-TKEVMLILIREFQSPDE----EMKKIVLKVVKQCCA--- 87 (166)
Q Consensus 17 VL~plW~Gir~-hRGK~LAaFLKaiG~IIPLMD~eyA~yY-t~evm~il~rEF~SPDe----EMKkiVLkVv~qc~~--- 87 (166)
.+.||.+-+.+ .....+..=+.|++.|--.-|..-...- ....++.|++-..++++ +.++-...++.+++.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 45566665433 2234444555666666332111111111 23456777777777765 588888888888774
Q ss_pred -ccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH----------hhCHHHHHHHhhcccccchHHHHH
Q psy10447 88 -TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN----------KVGASEIINRVVDDLKDENEQYRK 156 (166)
Q Consensus 88 -t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~----------Kvg~~~il~~iv~~lKDesE~~R~ 156 (166)
++.....-+....+|+..+-.- ........+++--|++ .+.-...+.-|++-|++.++.-|+
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~-------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLK-------SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSS-------CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHH
T ss_pred CCHHHHHHHHHcccHHHHHHHHc-------CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 3333333333445665544321 0111111122222221 122234566778888899999999
Q ss_pred HHHHHHhhc
Q psy10447 157 MVMESIEKT 165 (166)
Q Consensus 157 M~~eti~kv 165 (166)
.+..|+..+
T Consensus 440 ~Aa~AL~nL 448 (458)
T 3nmz_A 440 GSAAALRNL 448 (458)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 95
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=36.85 E-value=78 Score=26.68 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=56.3
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhhhcc-cCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH------
Q psy10447 60 MLILIREFQSPDEEMKKIVLKVVKQCCAT-DGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIAN------ 132 (166)
Q Consensus 60 m~il~rEF~SPDeEMKkiVLkVv~qc~~t-~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~------ 132 (166)
++.|++-.+|+|++.+......+++.+.. +.....-.....+|++-+-.-. -|......-+.+-..||.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~~k 79 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHH
Confidence 34566667788999999999999987643 3333344455556655543210 011111111112122221
Q ss_pred -hhCHHHHHHHhhcccc-cchHHHHHHHHHHHhh
Q psy10447 133 -KVGASEIINRVVDDLK-DENEQYRKMVMESIEK 164 (166)
Q Consensus 133 -Kvg~~~il~~iv~~lK-DesE~~R~M~~eti~k 164 (166)
.+.-...+..++..|+ +.++..+..++.++..
T Consensus 80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~n 113 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWN 113 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 1112233566777777 7788999999888754
No 96
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=36.66 E-value=27 Score=25.54 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHH
Q psy10447 73 EMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHR 112 (166)
Q Consensus 73 EMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR 112 (166)
+|+.-+.++..+|....||+.+-+ .. |++||.-.
T Consensus 7 ~~~~~~~~~~~~C~~E~gvs~e~i-----~~-~~~~~~~~ 40 (137)
T 1dqe_A 7 NLSLNFGKALDECKKEMTLTDAIN-----ED-FYNFWKEG 40 (137)
T ss_dssp HHHHHHHTTHHHHHHHTTCCTHHH-----HH-HHTTTSTT
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHH-----HH-HHHhcccc
Confidence 677778899999999999998655 22 45677655
No 97
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=35.98 E-value=86 Score=25.36 Aligned_cols=92 Identities=11% Similarity=0.185 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHH--HHHHHhhcccc
Q psy10447 71 DEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGAS--EIINRVVDDLK 148 (166)
Q Consensus 71 DeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~--~il~~iv~~lK 148 (166)
+..||.++..-+.+.+..-++.++-+ ...-.+|..|-.+.....++....+.-|.+-||-|+.-. --++.++.-..
T Consensus 46 ~~~~R~~lv~wl~~v~~~~~l~~~tl--~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~ 123 (283)
T 1w98_B 46 QPKMRAILLDWLMEVCEVYKLHRETF--YLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD 123 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBHHHH--HHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc
Confidence 45899999998888888888888765 333346667766533455666667778999999998421 11344432221
Q ss_pred c--chHHHHHHHHHHHhh
Q psy10447 149 D--ENEQYRKMVMESIEK 164 (166)
Q Consensus 149 D--esE~~R~M~~eti~k 164 (166)
+ ..+.+.+|=..-++.
T Consensus 124 ~~~~~~ei~~mE~~IL~~ 141 (283)
T 1w98_B 124 GACSGDEILTMELMIMKA 141 (283)
T ss_dssp TSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 1 245566664444433
No 98
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=35.65 E-value=78 Score=27.37 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=48.0
Q ss_pred HHHHHHhhhcchHHHHHHHHhhhc-cc----CChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccC
Q psy10447 21 LWKGIRTHRGKGLAAFLKAIGYLI-PL----MDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDG 90 (166)
Q Consensus 21 lW~Gir~hRGK~LAaFLKaiG~II-PL----MD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~g 90 (166)
.-+.++..|-+.-.+.-+ ++.-+ .+ |+.-..+.+-+++-.-+.++|++ |+.+|+..+..++|.+++.+
T Consensus 140 arke~~r~rr~ierAl~~-~~~~~~~~ri~~fSdf~~~p~Yr~l~~~v~~af~t-d~~FR~aC~~Ms~~vL~~r~ 212 (289)
T 2x9q_A 140 AVKNIRGVRAKITTTVNE-LDPAGARLCVRPMSEFQSNEAYRELHADLLTRLKD-DEDMRAVCQDLVRRFLSTKV 212 (289)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCTTCSSEEEEEGGGGGGCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH-hCCCccccceeeHHHhccCHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhcCC
Confidence 345566666665555444 66665 54 45444666667788889999987 88999999999999987765
No 99
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=35.40 E-value=71 Score=25.08 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHh
Q psy10447 107 NFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIE 163 (166)
Q Consensus 107 ~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~ 163 (166)
+.|.||.|..-.... ..+-+....+.-+...++|+..-.|+++--+++
T Consensus 144 ~~w~rR~ai~~~l~~---------~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr 191 (232)
T 3jxy_A 144 NIWLQRAAILFQLKY---------KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLR 191 (232)
T ss_dssp CHHHHHHHHHTTTTC---------GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH---------HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 689999998765332 234556666666666777777777777665554
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=34.15 E-value=41 Score=27.95 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=54.9
Q ss_pred hhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHH---HHHHhhcCCCcHHHHHHHHHHHHhhhcccC
Q psy10447 14 FDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVM---LILIREFQSPDEEMKKIVLKVVKQCCATDG 90 (166)
Q Consensus 14 Fd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm---~il~rEF~SPDeEMKkiVLkVv~qc~~t~g 90 (166)
...|.+.+-+|++.-=.|.-+.+|..++++|+.--..... .. +-+..-+++||.+.|..-|.++-.|-..-|
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~-----~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK-----SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGG-----GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccc-----cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3456666667776666788999999999999886433222 34 668889999999999999999988765544
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=33.53 E-value=1.1e+02 Score=30.05 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCc
Q psy10447 32 GLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPD 71 (166)
Q Consensus 32 ~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPD 71 (166)
.+-|-+=|||+|-=-|+++.-+-+--+||+.|.+=.+.|-
T Consensus 495 ~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~ 534 (1073)
T 3gjx_A 495 NLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKR 534 (1073)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccccc
Confidence 4777888999998899988888899999999987665553
No 102
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=33.53 E-value=63 Score=27.39 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=62.7
Q ss_pred cccCCcchhhhhhhhHHHHHHHH----hhhcchHHHHHHHH-hhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHH
Q psy10447 4 IHCHTLSIESFDSVLKPLWKGIR----THRGKGLAAFLKAI-GYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIV 78 (166)
Q Consensus 4 ~as~PYGIEsFd~VL~plW~Gir----~hRGK~LAaFLKai-G~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiV 78 (166)
++..|||=-....+|+-.-..-+ ..|=..+...+.+| ++..+|.--.|+||=..-++ +..+|.|+-|..+
T Consensus 177 la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL-----~~~~~~e~~r~~i 251 (382)
T 3v71_A 177 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVI-----KSSGIMEMYRDTI 251 (382)
T ss_dssp HHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHH-----TCCSTHHHHHHHH
T ss_pred HhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHH-----hcCCCcHHHHHHH
Confidence 45667775555555553210000 01111222333333 45566775678888554443 2445545555444
Q ss_pred H-H-----------------HHHhhhcccCcchhhHhhhhchHHHHHH---------HHHHhhhhhhhhhHHHHHHHHHH
Q psy10447 79 L-K-----------------VVKQCCATDGVEAQYIKDEILPPFFKNF---------WNHRMALDRRNYRQLVDTTVEIA 131 (166)
Q Consensus 79 L-k-----------------Vv~qc~~t~gv~~~yir~~i~~~FF~~F---------W~rR~AlDr~~~~~vv~TTv~lA 131 (166)
+ + ||++|....+ ++ .|+.|+.+++..+ -...++.|. --+-||.+.++.+
T Consensus 252 i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~--~~-~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~-ygNyVvQ~~L~~~ 327 (382)
T 3v71_A 252 IDKCLLRNLLSMSQDKYASHVIEGAFLFAP--PA-LLHEMMEEIFSGYVKDVESNRDALDILLFHQ-YGNYVVQQMISIC 327 (382)
T ss_dssp HHHTTTTCHHHHTTSTTHHHHHHHHHHHCC--HH-HHHHHHHHHCC--CCCSSSCCCHHHHHHTCT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHhHHHHHHHHhCC--HH-HHHHHHHHHHhhccccccccchHHHHHHCCC-CccHHHHHHHHHc
Confidence 4 3 7888876543 34 4788888888643 334566663 4555666666666
Q ss_pred H
Q psy10447 132 N 132 (166)
Q Consensus 132 ~ 132 (166)
.
T Consensus 328 ~ 328 (382)
T 3v71_A 328 T 328 (382)
T ss_dssp H
T ss_pred c
Confidence 5
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=33.43 E-value=49 Score=29.87 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred ChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy10447 48 DAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTT 127 (166)
Q Consensus 48 D~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TT 127 (166)
|++-++==++.+.++|.. .+|||.+-|.-.+..+.+.+....-..-.+++.++++-....
T Consensus 25 ~~~~~~~~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~l------------------- 84 (684)
T 4gmo_A 25 DPELAKLREDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTET------------------- 84 (684)
T ss_dssp CHHHHHHHHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTT-------------------
T ss_pred cccccccchhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHH-------------------
Q ss_pred HHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 128 VEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 128 v~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
|-|.+..-|.-+..|++.+
T Consensus 85 -------------------L~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 85 -------------------LTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp -------------------TTCSCHHHHHHHHHHHHHH
T ss_pred -------------------cCCCCHHHHHHHHHHHHHH
No 104
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=33.27 E-value=2.8e+02 Score=25.26 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=88.4
Q ss_pred cCCcchhhh--hhhhHHHHHHHHhh-hcchHHHHHHHHhhhcccCChhHHhh---hH--HHHHHHHHhhcCCCcHHHHHH
Q psy10447 6 CHTLSIESF--DSVLKPLWKGIRTH-RGKGLAAFLKAIGYLIPLMDAEYANY---YT--KEVMLILIREFQSPDEEMKKI 77 (166)
Q Consensus 6 s~PYGIEsF--d~VL~plW~Gir~h-RGK~LAaFLKaiG~IIPLMD~eyA~y---Yt--~evm~il~rEF~SPDeEMKki 77 (166)
..|-|+|.+ -.++.+|-.-++.. +-..+.+-..||.++--= +..++.+ .. ....+.|++=..+++++.++.
T Consensus 296 ~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag-~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~ 374 (584)
T 3l6x_A 296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAG-RWTYGRYIRSALRQEKALSAIADLLTNEHERVVKA 374 (584)
T ss_dssp CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHH
T ss_pred cCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 467888876 24566666666542 334555555555555210 1111111 11 355889999999999999999
Q ss_pred HHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhH-HHHHH----------HHHHHhhCHHHHHHHhhcc
Q psy10447 78 VLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQ-LVDTT----------VEIANKVGASEIINRVVDD 146 (166)
Q Consensus 78 VLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~-vv~TT----------v~lA~Kvg~~~il~~iv~~ 146 (166)
....+.+++...+. .+-|....+|++-+-.=.---...+..... +..++ -+-++.+.-...|..|+.-
T Consensus 375 A~~aL~nLs~~~~~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~L 453 (584)
T 3l6x_A 375 ASGALRNLAVDARN-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLI 453 (584)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhCChhH-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH
Confidence 99999999987664 345566677766532210000000001111 11222 2223344445567777777
Q ss_pred cccc--hHHHHHHHHHHHh
Q psy10447 147 LKDE--NEQYRKMVMESIE 163 (166)
Q Consensus 147 lKDe--sE~~R~M~~eti~ 163 (166)
|++. ++.-++-|..++.
T Consensus 454 L~s~~~~~~v~k~Aa~vL~ 472 (584)
T 3l6x_A 454 NKSGNRSEKEVRAAALVLQ 472 (584)
T ss_dssp HTCSSSCHHHHHHHHHHHH
T ss_pred HhCCCCChHHHHHHHHHHH
Confidence 7775 7777777766654
No 105
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=33.11 E-value=1.2e+02 Score=21.07 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhH----------HHHHHHHHhhcCCCcH--HHHHHHHHHHH
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYT----------KEVMLILIREFQSPDE--EMKKIVLKVVK 83 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt----------~evm~il~rEF~SPDe--EMKkiVLkVv~ 83 (166)
.+++-.|..+..+-......|+.-+-.. +|+...|+. +-+|.-|..=+.++|+ ++...+-++-+
T Consensus 7 ~~v~~sw~~v~~~~~~~~~~fy~rlf~~----~P~~~~~F~~~~~~~~~q~~~~~~~l~~~v~~ld~~~~l~~~l~~l~~ 82 (140)
T 2wy4_A 7 QIIKDCVPILQKNGEDLTNEFYKIMFND----YPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAI 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----CGGGGGGSCHHHHHTSHHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH----ChHHHHhcCcCcccHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3567788888887777777777765544 566656553 2333333333334433 34444444444
Q ss_pred hhhcccCcchhhH
Q psy10447 84 QCCATDGVEAQYI 96 (166)
Q Consensus 84 qc~~t~gv~~~yi 96 (166)
+-+. -||+|++.
T Consensus 83 ~H~~-~gv~p~~f 94 (140)
T 2wy4_A 83 THVN-LGVKEEHY 94 (140)
T ss_dssp HHHH-TTCCGGGH
T ss_pred HHHH-cCCCHHHH
Confidence 4443 46666553
No 106
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=32.86 E-value=65 Score=26.80 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=52.7
Q ss_pred hhcCCCcHH--HHHHHHHHHHhhhcccC--cchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHH-HH
Q psy10447 65 REFQSPDEE--MKKIVLKVVKQCCATDG--VEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGAS-EI 139 (166)
Q Consensus 65 rEF~SPDeE--MKkiVLkVv~qc~~t~g--v~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~-~i 139 (166)
..+-||++| +++.....+.+.+..=+ +.+.-+ ...--||+.|+.+..-.+ .....|.-|++-||-|+--. -=
T Consensus 45 ~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~--~tA~~~~~RF~~~~s~~~-~~~~lva~acLfLA~K~EE~~~~ 121 (323)
T 1jkw_A 45 PVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVV--GTACMYFKRFYLNNSVME-YHPRIIMLTCAFLACKVDEFNVS 121 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHGGGSCTTT-SCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHhhhCChhh-cCHHHHHHHHHHHHHhhhcCCCC
Confidence 457778766 45666677888877777 666544 334459999997765443 45566778999999997532 12
Q ss_pred HHHhhcccc
Q psy10447 140 INRVVDDLK 148 (166)
Q Consensus 140 l~~iv~~lK 148 (166)
++.++..++
T Consensus 122 l~d~v~~~~ 130 (323)
T 1jkw_A 122 SPQFVGNLR 130 (323)
T ss_dssp HHHHGGGSS
T ss_pred HHHHHHHhc
Confidence 344554454
No 107
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=32.25 E-value=1.7e+02 Score=23.33 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=59.5
Q ss_pred CCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHH--HHHHHhhcc
Q psy10447 69 SPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGAS--EIINRVVDD 146 (166)
Q Consensus 69 SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~--~il~~iv~~ 146 (166)
.-+..||.++..-+.+.+..-++.++-+ ...-.+|..|-.++. ..++....+.-|.+-||-|+--. --++.++.-
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl--~lAv~~lDRfl~~~~-v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~ 108 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETM--YMTVSIIDRFMQNNS-VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFV 108 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHTTSC-CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHhcCCC-CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHH
Confidence 4578999999999988888888888765 334456777765553 55666777779999999998321 113444432
Q ss_pred ccc--chHHHHHHHHHHHh
Q psy10447 147 LKD--ENEQYRKMVMESIE 163 (166)
Q Consensus 147 lKD--esE~~R~M~~eti~ 163 (166)
..+ ..+.+.+|=..-++
T Consensus 109 ~~~~~~~~eI~~mE~~IL~ 127 (269)
T 2b9r_A 109 TDNTYTKHQIRQMEMKILR 127 (269)
T ss_dssp TCSSSCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHH
Confidence 221 34556665444433
No 108
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.08 E-value=60 Score=23.35 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHHhhhhhh--hhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHH
Q psy10447 110 NHRMALDRR--NYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMES 161 (166)
Q Consensus 110 ~rR~AlDr~--~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~et 161 (166)
.||.||+-. -++.|-+-.- -++.-+..||-+|+.+|.+|-++
T Consensus 36 ~RR~AL~eaL~EN~~Lh~~ie----------~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 36 KRRKALYEALKENEKLHKEIE----------QKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888752 2333332221 25556678899999999988765
No 109
>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} SCOP: a.39.2.1 PDB: 3b6x_A 2gte_A* 1oof_A 1ooi_X 1t14_A 1oog_A* 3b7a_A 3b86_A* 3b87_A* 3b88_A* 2qdi_A*
Probab=31.57 E-value=44 Score=22.80 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHHHhhhcccCcchhhH
Q psy10447 70 PDEEMKKIVLKVVKQCCATDGVEAQYI 96 (166)
Q Consensus 70 PDeEMKkiVLkVv~qc~~t~gv~~~yi 96 (166)
+++++++.+-.+...|...-|++.+.+
T Consensus 4 t~~~~~~~~~~~~~~C~~e~~v~~~~~ 30 (126)
T 1ooh_A 4 TMEQFLTSLDMIRSGCAPKFKLKTEDL 30 (126)
T ss_dssp CHHHHHHHHHHHHHTTGGGSCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccCCCHHHH
Confidence 578999999999999999999998765
No 110
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=31.48 E-value=37 Score=24.88 Aligned_cols=34 Identities=15% Similarity=0.447 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHhhCH-------HHHHHHhhcccccc
Q psy10447 117 RRNYRQLVDTTVEIANKVGA-------SEIINRVVDDLKDE 150 (166)
Q Consensus 117 r~~~~~vv~TTv~lA~Kvg~-------~~il~~iv~~lKDe 150 (166)
+--...+|+.+|+||+++|. --||.++...++.+
T Consensus 99 ~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~ 139 (141)
T 3d3b_A 99 DVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 139 (141)
T ss_dssp TSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCTT
T ss_pred CCCchhhHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhhc
Confidence 33456778889999999873 33555555544443
No 111
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=31.31 E-value=15 Score=29.28 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=36.0
Q ss_pred CCccccCCcchhhhhhhhHHHHHHHHhhhcchHHHHHHHHhhh
Q psy10447 1 MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYL 43 (166)
Q Consensus 1 ~~~~as~PYGIEsFd~VL~plW~Gir~hRGK~LAaFLKaiG~I 43 (166)
|.+||.+-|..+.|..|+.-||+-+-...||.=---+||+--|
T Consensus 55 m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LL 97 (176)
T 1xgw_A 55 MGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLL 97 (176)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 4578888888999999999999998777788877788887655
No 112
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=30.50 E-value=2.9e+02 Score=25.19 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHh--hhcchHHHHHHHHhhhcccCChhHHhhhHHH----HHHHHHhhcCCC--cHHHHHHHH
Q psy10447 14 FDSVLKPLWKGIRT--HRGKGLAAFLKAIGYLIPLMDAEYANYYTKE----VMLILIREFQSP--DEEMKKIVL 79 (166)
Q Consensus 14 Fd~VL~plW~Gir~--hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~e----vm~il~rEF~SP--DeEMKkiVL 79 (166)
+++++.-|-+-+.+ ..-+.....+.|||.++-.+.++...-|... ++..+..--+++ |++.+..+.
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 655 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTI 655 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 34444444555554 2236778889999999876653333333333 333333333343 555554333
No 113
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=30.10 E-value=99 Score=24.48 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=49.0
Q ss_pred CCcchhhhhhhhHHHHHHHHh-------hhcchHHHHHHHHhhhcccCC-------h--------hHHhhhHHHHHHHHH
Q psy10447 7 HTLSIESFDSVLKPLWKGIRT-------HRGKGLAAFLKAIGYLIPLMD-------A--------EYANYYTKEVMLILI 64 (166)
Q Consensus 7 ~PYGIEsFd~VL~plW~Gir~-------hRGK~LAaFLKaiG~IIPLMD-------~--------eyA~yYt~evm~il~ 64 (166)
.|=.-+ |..+|.||=+-|.. +||.-+--.|+|++==||.+. | +-|.|||..|+.
T Consensus 53 KP~~~~-~~~lL~pl~~~i~~i~~~re~nR~s~~fNHLsavsEgi~aLgWV~v~~~P~~~V~e~~dsA~Fy~NrVLk--- 128 (176)
T 1s0p_A 53 KPSQET-LLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVEPTPGPHVAEMRGSAEFYTNRILK--- 128 (176)
T ss_dssp CCCHHH-HHHHTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHTSGGGGGGGGCCSCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCchh-HHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHhhhhceeeccCCCchhHHHHHHHHHHHHHHHHHH---
Confidence 565434 99999999877654 888889999999998888763 2 579999988765
Q ss_pred hhcCCCcHHH
Q psy10447 65 REFQSPDEEM 74 (166)
Q Consensus 65 rEF~SPDeEM 74 (166)
||..-|+..
T Consensus 129 -e~K~kd~~h 137 (176)
T 1s0p_A 129 -EFKGVNQDQ 137 (176)
T ss_dssp -HHTTTCHHH
T ss_pred -HHhhcChhH
Confidence 888778753
No 114
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=29.81 E-value=1.3e+02 Score=23.81 Aligned_cols=62 Identities=10% Similarity=0.199 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC
Q psy10447 71 DEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG 135 (166)
Q Consensus 71 DeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg 135 (166)
+..||.++..-+.+.+..-++.++-+ ...-.+|..|-.++ ...++....+.-|.+-||-|+.
T Consensus 35 ~~~~R~~lvdwl~~v~~~~~l~~~tl--~lAv~~lDRfls~~-~v~~~~lqlv~~acl~iA~K~e 96 (260)
T 2cch_B 35 TNSMRAILVDWLVEVGEEYKLQNETL--HLAVNYIDRFLSSM-SVLRGKLQLVGTAAMLLASKFE 96 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHhccC-CCCHHHHhHHHHHHHHHHHHhc
Confidence 57899999999999999989888766 33334666666554 3455566667789999999974
No 115
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=29.20 E-value=75 Score=24.23 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=58.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHh------hhhhhhhhHHHHHHHHHHHhh
Q psy10447 68 QSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRM------ALDRRNYRQLVDTTVEIANKV 134 (166)
Q Consensus 68 ~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~------AlDr~~~~~vv~TTv~lA~Kv 134 (166)
+|.+.+-=..+|+-+.+.....|+.+.-.+..++-.--+.|=.|-. ..|+.....+-.-+.+||++|
T Consensus 21 ~s~~~~~~~~ll~~i~~ll~~~~I~~~~vQ~qmL~sHl~Amv~Rs~~GE~LPeVd~sLF~EIS~es~~LA~~V 93 (119)
T 3nuf_A 21 QSSDAQAATALVNYVIKLAAAAEIHFTDLQLQVLTNHLIEMLGRSKSGEQLPAVDPTMFAEVSQKSLDLADQV 93 (119)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGGTTSCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccCCcCCccCHHHHHHcCHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999976654 358888888888889999854
No 116
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=29.00 E-value=1.5e+02 Score=25.62 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=24.0
Q ss_pred cccCCcchhhhhhhhHHHHHHHHhhhcchHHHHHHHH---hhhcccCChhHHhhhHHHHHH
Q psy10447 4 IHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAI---GYLIPLMDAEYANYYTKEVML 61 (166)
Q Consensus 4 ~as~PYGIEsFd~VL~plW~Gir~hRGK~LAaFLKai---G~IIPLMD~eyA~yYt~evm~ 61 (166)
++..+||=.....+++ .+.. .-....++++ |.+..||--.++||=...++.
T Consensus 117 L~~~~~GsrvvQk~le----~~~~---~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le 170 (412)
T 3k62_A 117 MCLDKFACRVIQSSLQ----NMDL---SLACKLVQALPRDARLIAICVDQNANHVIQKVVA 170 (412)
T ss_dssp HHHSTTHHHHHHHHHH----HSCH---HHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHH
T ss_pred HHcChhhhHHHHHHHH----hCCH---HHHHHHHHHHhccccHHHHHhCccccHHHHHHHH
Confidence 4455666544444443 2221 1223344555 566666644556664444433
No 117
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=27.79 E-value=1.3e+02 Score=24.77 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Q psy10447 72 EEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKV 134 (166)
Q Consensus 72 eEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kv 134 (166)
..||.++..-+.+.+..-++.++-+- ..-.+|..|-.++ ...+....++--|.+-||-|+
T Consensus 68 ~~~R~~lvdwl~ev~~~~~l~~~t~~--lAv~~lDRfls~~-~v~~~~lqLv~~tcL~lAsK~ 127 (306)
T 3g33_B 68 PHMRKMLAYWMLEVCEEQRCEEEVFP--LAMNYLDRYLSCV-PTRKAQLQLLGAVCMLLASKL 127 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTHHH--HHHHHHHHHHHHC-CCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHhHHH--HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHh
Confidence 58999999999999988888887652 3335666666554 455666667778999999997
No 118
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=27.64 E-value=13 Score=34.89 Aligned_cols=83 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhh
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQY 95 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~y 95 (166)
.--+-||..|.+.|...|+.||-|+| ||-.-+.-| ..|.+.|.|-+.=+.-. +.++...+||.+.-
T Consensus 508 ksa~nLl~aIe~sk~~~l~r~L~aLG--Ip~VG~~~a--------k~La~~Fgsle~L~~As----~eeL~~I~GIG~~~ 573 (615)
T 3sgi_A 508 ANGKRLLVNLDKAKAAPLWRVLVALS--IRHVGPTAA--------RALATEFGSLDAIAAAS----TDQLAAVEGVGPTI 573 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHcC--CCCCCHHHH--------HHHHHHcCCHHHHHhCC----HHHHhhCCCCCHHH
Confidence 33456889999999999999999999 676544333 24677787766433332 36677888998863
Q ss_pred HhhhhchHHHHHHHHHHhh
Q psy10447 96 IKDEILPPFFKNFWNHRMA 114 (166)
Q Consensus 96 ir~~i~~~FF~~FW~rR~A 114 (166)
-+.|. .||++=||+.+.
T Consensus 574 -A~sI~-~ff~~~~n~~~i 590 (615)
T 3sgi_A 574 -AAAVT-EWFAVDWHREIV 590 (615)
T ss_dssp -------------------
T ss_pred -HHHHH-HHHcCHHHHHHH
Confidence 34444 799998887653
No 119
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=27.58 E-value=2e+02 Score=24.56 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhH-----hhhhchHHHHHH
Q psy10447 35 AFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYI-----KDEILPPFFKNF 108 (166)
Q Consensus 35 aFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yi-----r~~i~~~FF~~F 108 (166)
.|.+-|..+|=--|-..-.-|.+++-......|..-+++-|..++.++-+|+--.+++..+- -+.+..+||+.-
T Consensus 182 ~~r~~ii~~ILATDm~~Hf~~~~~~~~~~~~~~~~~~~~~r~lll~~lik~aDiSn~~rp~~v~~~Wa~~l~eEFf~Qg 260 (345)
T 3itu_A 182 RMLDLMRDIILATDLAHHLRIFKDLQKMAEVGYDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQG 260 (345)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHTGGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHhH
Confidence 35555555554446433233455555555667888889999999999999998888876652 234566666553
No 120
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=27.48 E-value=1e+02 Score=24.33 Aligned_cols=61 Identities=10% Similarity=0.259 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Q psy10447 71 DEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKV 134 (166)
Q Consensus 71 DeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kv 134 (166)
+..||.++..-+.+.+..-++.++-+ .+.-.+|..|-.++ ...++....+--|.+-||-|+
T Consensus 47 ~~~~R~~lvdwl~ev~~~~~l~~etl--~lAv~~~DRfls~~-~v~~~~lqLv~~acl~iA~K~ 107 (257)
T 1g3n_C 47 TSHMRKLLGTWMFSVCQEYNLEPNVV--ALALNLLDRLLLIK-QVSKEHFQKTGSACLLVASKL 107 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHH--HHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999989888765 33345666666554 455556666668999999997
No 121
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=27.21 E-value=1.1e+02 Score=28.95 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=52.7
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhH
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYI 96 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yi 96 (166)
-.+-|+++|...|.+.|..||-|+| ||-.-+..|. .|.+.|.|=|. +.-.-..++...+||.+.-
T Consensus 487 sa~nLl~aIe~sk~~~l~R~L~alG--I~~VG~~~Ak--------~La~~Fgsl~~----l~~As~eeL~~I~GIG~~~- 551 (667)
T 1dgs_A 487 SAQNLLRQIEESKHRGLERLLYALG--LPGVGEVLAR--------NLARRFGTMDR----LLEASLEELIEVEEVGELT- 551 (667)
T ss_dssp THHHHHHHHHHGGGCCHHHHHHHTT--CSSCCHHHHH--------HHHHTTSBHHH----HTTCCHHHHHTSTTCCHHH-
T ss_pred hHHHHHHHHHHHhcCcHHHhhHhhc--cCCccHHHHH--------HHHHHcCCHHH----HHhCCHHHHHhccCcCHHH-
Confidence 3567889999999999999999998 6776654432 45555655221 1111123556778888863
Q ss_pred hhhhchHHHHHHHHHHhh
Q psy10447 97 KDEILPPFFKNFWNHRMA 114 (166)
Q Consensus 97 r~~i~~~FF~~FW~rR~A 114 (166)
-+.| -.||.+=||+.+.
T Consensus 552 A~sI-~~ff~~~~~~~~i 568 (667)
T 1dgs_A 552 ARAI-LETLKDPAFRDLV 568 (667)
T ss_dssp HHHH-HHHHHCHHHHHHH
T ss_pred HHHH-HHHHhhHHHHHHH
Confidence 3444 4688877776543
No 122
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=26.77 E-value=1.6e+02 Score=22.86 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=39.0
Q ss_pred cCCcch--hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhh-cccC--------ChhHHhhhHHHHHHHHHhhcCCCcHHH
Q psy10447 6 CHTLSI--ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYL-IPLM--------DAEYANYYTKEVMLILIREFQSPDEEM 74 (166)
Q Consensus 6 s~PYGI--EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~I-IPLM--------D~eyA~yYt~evm~il~rEF~SPDeEM 74 (166)
|.|+|= +.+-.-..|+|+.+.+| .|++.++.= +|.= |-.|-..|.+-+...+. .+||.+.
T Consensus 3 ~~p~g~f~~~L~~~~~~~w~~~~~H------PFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~a---ka~~~~~ 73 (226)
T 3mvu_A 3 SEPYGKAFSLMRAEAEPAWRAYTHH------AFVEGLKAGTLPREAFLHYLQQDYVFLIHFSRAWALAVV---KSETHSE 73 (226)
T ss_dssp CSTTCHHHHHHHHHTTTHHHHHHTC------HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---TCCSHHH
T ss_pred CCCCCcHHHHHHHhCHHHHHHHHCC------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHH
Confidence 678881 22233446899999888 366655431 1110 23344455555555544 3677666
Q ss_pred HHHHHHHHHhhh
Q psy10447 75 KKIVLKVVKQCC 86 (166)
Q Consensus 75 KkiVLkVv~qc~ 86 (166)
++..++.+..+.
T Consensus 74 ~~~~~~~~~~~~ 85 (226)
T 3mvu_A 74 MLAAVGTVNALV 85 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555554443
No 123
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=26.31 E-value=47 Score=26.28 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=12.3
Q ss_pred CCcHHHHHHHHHHHHhhhc
Q psy10447 69 SPDEEMKKIVLKVVKQCCA 87 (166)
Q Consensus 69 SPDeEMKkiVLkVv~qc~~ 87 (166)
+||++++..+++ +|||..
T Consensus 30 n~~pealeA~~e-LKqCvD 47 (153)
T 1zkr_A 30 KALPVVLENARI-LKNCVD 47 (153)
T ss_dssp CCCHHHHHHHHH-HHHHHH
T ss_pred CCCHHHHHHHHH-HHhccc
Confidence 466777777766 477766
No 124
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=26.27 E-value=1.8e+02 Score=22.76 Aligned_cols=91 Identities=10% Similarity=0.173 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCH--HHHHHHhhcccc
Q psy10447 71 DEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGA--SEIINRVVDDLK 148 (166)
Q Consensus 71 DeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~--~~il~~iv~~lK 148 (166)
+..||.++..-+.+.+..-+..++-+ .+.-.+|..|-.++ ...++....+--|.+-||-|+.- .--++.++.-..
T Consensus 48 ~~~~R~~lvdwl~~v~~~~~l~~etl--~lAv~~~DRfls~~-~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~ 124 (254)
T 2f2c_A 48 TVDNRTILLTWMHLLCESFELDKSVF--PLSVSILDRYLCKK-QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC 124 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTHH--HHHHHHHHHHTTTS-CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-
T ss_pred CHHHHHHHHHHHHHHHHHHCCCchHH--HHHHHHHHHHHccC-CcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhC
Confidence 47899999999999998888887755 33334566665544 35555666666899999999831 222444443322
Q ss_pred c--chHHHHHHHHHHHhh
Q psy10447 149 D--ENEQYRKMVMESIEK 164 (166)
Q Consensus 149 D--esE~~R~M~~eti~k 164 (166)
+ ..+.+.+|=..-++.
T Consensus 125 ~~~~~~~i~~mE~~IL~~ 142 (254)
T 2f2c_A 125 DCFTNLELINQEKDILEA 142 (254)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 2 345666665544443
No 125
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=26.18 E-value=1.7e+02 Score=20.60 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhH
Q psy10447 17 VLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYT 56 (166)
Q Consensus 17 VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt 56 (166)
++.-.|.-+..+....-..|+.-+=.. +|+...|+.
T Consensus 9 ~v~~sw~~v~~~~~~~g~~~y~rlF~~----~P~~~~~F~ 44 (141)
T 2w72_C 9 NVKAAWGKVGAHAGEYGAEAYERMFLS----FPTTKTYFP 44 (141)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHH----CGGGGGGCT
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHH----ChhHHHHHH
Confidence 567788888766554444555444333 566666655
No 126
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=26.12 E-value=1.1e+02 Score=28.23 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcc
Q psy10447 35 AFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT 88 (166)
Q Consensus 35 aFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t 88 (166)
..+.|||.|+-..+|+-..-|-..+|+++.+-+++...+..--++.++.+|...
T Consensus 618 ~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 618 YTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 478999999988888887888899999998888777667777788887776643
No 127
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=26.10 E-value=67 Score=29.72 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHH
Q psy10447 69 SPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFW 109 (166)
Q Consensus 69 SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW 109 (166)
|.+++--+.+|.-++.-....-+ -...+|.||++|=
T Consensus 25 ~~~~~~y~~Il~~~kg~~k~K~L-----aaQ~I~kffk~FP 60 (507)
T 3u0r_A 25 GQHKDAYQVILDGVKGGTKEKRL-----AAQFIPKFFKHFP 60 (507)
T ss_dssp GGGHHHHHHHHHGGGSCHHHHHH-----HHHHHHHHGGGCG
T ss_pred cccHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHHhhCh
Confidence 34566667777665544333333 4455799999996
No 128
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} PDB: 3q36_A*
Probab=25.81 E-value=45 Score=27.11 Aligned_cols=31 Identities=39% Similarity=0.727 Sum_probs=24.1
Q ss_pred hhhhhhhHHHHHHHHh-----hhcc-hHHHHHHHHhh
Q psy10447 12 ESFDSVLKPLWKGIRT-----HRGK-GLAAFLKAIGY 42 (166)
Q Consensus 12 EsFd~VL~plW~Gir~-----hRGK-~LAaFLKaiG~ 42 (166)
++|=+-+.-|...+|+ |-|+ .|++|||.||.
T Consensus 13 ~~fPpCM~~l~~~Lr~~~hL~h~gR~ql~lFLkgiGl 49 (195)
T 3l9q_A 13 KSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGL 49 (195)
T ss_dssp HHSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTE
T ss_pred ccCCHHHHHHHHHHHcCCCCCchhHHHHHHHHHhCCC
Confidence 4566667778888886 5666 69999999996
No 129
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=25.78 E-value=3.3e+02 Score=23.70 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=59.9
Q ss_pred HHHHHHhh-cCCCcHHHHHHHHHHHHhhhc-ccCcchhhH-hhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHH---H-
Q psy10447 59 VMLILIRE-FQSPDEEMKKIVLKVVKQCCA-TDGVEAQYI-KDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEI---A- 131 (166)
Q Consensus 59 vm~il~rE-F~SPDeEMKkiVLkVv~qc~~-t~gv~~~yi-r~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~l---A- 131 (166)
.++.|++- ..+++++.++..+..+.+++. +++.-++.. ..-.+|+.-+-.-. ..|........+++--| |
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~---~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY---RSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC---CCSSSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC---CCCcchHHHHHHHHHHHHHHHh
Confidence 45677775 577899999999999999887 545444443 33455544332210 01110001112222212 2
Q ss_pred ---------HhhCHHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447 132 ---------NKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164 (166)
Q Consensus 132 ---------~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~k 164 (166)
+.+.-...+..|+..|++.++..++-+..|+..
T Consensus 364 ~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 364 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 112222357788999999999999999988864
No 130
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=25.78 E-value=2.9e+02 Score=22.97 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=60.0
Q ss_pred HHHHHHhh-cCCCcHHHHHHHHHHHHhhhc-ccCcchhhH-hhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHH---H-
Q psy10447 59 VMLILIRE-FQSPDEEMKKIVLKVVKQCCA-TDGVEAQYI-KDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEI---A- 131 (166)
Q Consensus 59 vm~il~rE-F~SPDeEMKkiVLkVv~qc~~-t~gv~~~yi-r~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~l---A- 131 (166)
.++.|++- ..++|++.++..+..+.+++. +++.-+... ..-.+|+.-+-.- ...|+.....+.+++--| |
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~---~~~~~~~~~v~~~A~~aL~nLs~ 247 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT---YRSQTNTLAIIESGGGILRNVSS 247 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT---CCCSSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc---cCCCcccHHHHHHHHHHHHHHHh
Confidence 45667765 467899999999999998887 545444443 3445554433321 011110001111222111 1
Q ss_pred ---------HhhCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447 132 ---------NKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165 (166)
Q Consensus 132 ---------~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~kv 165 (166)
+.+.-...+..|+..|++.+...++-+..|+..+
T Consensus 248 ~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1111223578888999999999999999888653
No 131
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=25.19 E-value=1.5e+02 Score=24.27 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=28.2
Q ss_pred ccccCCcchhhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHH
Q psy10447 3 DIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVML 61 (166)
Q Consensus 3 ~~as~PYGIEsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~ 61 (166)
+++..|||-.....+|+-.- ...|-..+... .+.+.+|+--.|+||=..-++.
T Consensus 174 ~ls~~~~G~~Vvq~~le~~~---~~~~~~ii~~l---~~~~~~L~~d~~Gn~ViQ~~l~ 226 (351)
T 3gvo_A 174 VLSTHPYGCRVIQRILEHCT---AEQTLPILEEL---HQHTEQLVQDQYGNYVIQHVLE 226 (351)
T ss_dssp HHHTSTTHHHHHHHHHHHSC---HHHHHHHHHHH---HTTHHHHHTSTTHHHHHHHHHH
T ss_pred HHHhCcHhHHHHHHHHHHCC---HHHHHHHHHHH---hhhHHhcCCCchHHHHHHHHHH
Confidence 35667788766666655321 12232333332 2456666655778876555543
No 132
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=25.10 E-value=2.4e+02 Score=28.19 Aligned_cols=127 Identities=20% Similarity=0.381 Sum_probs=70.7
Q ss_pred HHHHHH---HHhhhcchHHHHHHHHhh-----------------------hcccCChhHHhhhHHHHHHHHHhhcCCCcH
Q psy10447 19 KPLWKG---IRTHRGKGLAAFLKAIGY-----------------------LIPLMDAEYANYYTKEVMLILIREFQSPDE 72 (166)
Q Consensus 19 ~plW~G---ir~hRGK~LAaFLKaiG~-----------------------IIPLMD~eyA~yYt~evm~il~rEF~SPDe 72 (166)
+-||+- +.+|--++|..||+|+-. -+.|+|+.|++-..++...-..+ +-|||
T Consensus 578 ~llW~~R~~~~~~~p~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d~~VR~yAV~~L~--~~~d~ 655 (1092)
T 2y3a_A 578 DLIWTLRQDCRENFPQSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPDQYVREYAVGCLR--QMSDE 655 (1092)
T ss_dssp HHHHHTHHHHHHHCGGGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCCTTHHHHHHHHHH--SSCHH
T ss_pred HHHHHhHHHHHhcCcHHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHHHHhcCccCCCHHHHHHHHHHHH--cCCHH
Confidence 458873 334447899999987522 24556666666666655544444 37889
Q ss_pred HHHHHHHHHHHhhhcc---cCcchhhHh-----hhhchHHHHHHHHHHhhhhh----hhhhHHHHHH--------HHHHH
Q psy10447 73 EMKKIVLKVVKQCCAT---DGVEAQYIK-----DEILPPFFKNFWNHRMALDR----RNYRQLVDTT--------VEIAN 132 (166)
Q Consensus 73 EMKkiVLkVv~qc~~t---~gv~~~yir-----~~i~~~FF~~FW~rR~AlDr----~~~~~vv~TT--------v~lA~ 132 (166)
|.---++.+||-+.-- ++--.+||- +..+..|| ||+=+.-++. ..+..++++- -.+.+
T Consensus 656 ~l~~yLpQLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l--~W~L~~e~~~~~~~~r~~~lle~~~~~~~~~~~~l~~ 733 (1092)
T 2y3a_A 656 ELSQYLLQLVQVLKYEPFLDCALSRFLLERALDNRRIGQFL--FWHLRSEVHTPAVSVQFGVILEAYCRGSVGHMKVLSK 733 (1092)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCHHHHHHHHHHTSCSSHHHHH--HHHHHHHHTSHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHhhChHHHHHH--HHHeeecccCchHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 9999999888744322 111133431 12233333 7876665532 1233444432 23445
Q ss_pred hhCHHHHHHHhhccccc
Q psy10447 133 KVGASEIINRVVDDLKD 149 (166)
Q Consensus 133 Kvg~~~il~~iv~~lKD 149 (166)
.+.+...|..|...+|.
T Consensus 734 Q~~~~~~L~~is~~ik~ 750 (1092)
T 2y3a_A 734 QVEALNKLKTLNSLIKL 750 (1092)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55566666666666663
No 133
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=24.71 E-value=1.7e+02 Score=23.34 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=59.0
Q ss_pred hhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcc
Q psy10447 13 SFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVE 92 (166)
Q Consensus 13 sFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~ 92 (166)
-|+.|.+-+.. ..|-.+|++ |+.=..|=|| =|++..|-+.+|...+. |-++=..++++++.......+.
T Consensus 12 yf~~It~a~~~---~~r~~aL~s-L~~D~gL~~L-lPyf~~fI~~~v~~nl~------~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 12 YFDKILSMIKS---DMKDIAIEC-LEKESGLQQL-VPYFIQHISELILKSFK------EAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp HHHHHHHHHTS---TTHHHHHHH-HHHCSSCTTT-HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHh---HHHHHHHHH-HhcCCChhhh-HHHHHHHHHHHHHhccC------CHHHHHHHHHHHHHHHcCCCCC
Confidence 46666666654 334344333 2322333333 26777888888766443 8889999999999999999987
Q ss_pred hhhHhhhhchHHHHHHHHHHhhh
Q psy10447 93 AQYIKDEILPPFFKNFWNHRMAL 115 (166)
Q Consensus 93 ~~yir~~i~~~FF~~FW~rR~Al 115 (166)
-+.--..++|+-..+-=.+++..
T Consensus 81 lepYlH~LipsvLtCll~k~l~~ 103 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVD 103 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCC
T ss_pred hHHHHHHHHHHHHHHHHhcccCH
Confidence 66445678888776655444433
No 134
>1vke_A Carboxymuconolactone decarboxylase family protein; TM1620, structural genomics, JC protein structure initiative, PSI; 1.56A {Thermotoga maritima} SCOP: a.152.1.2
Probab=24.57 E-value=24 Score=26.17 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=28.4
Q ss_pred CcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhh
Q psy10447 90 GVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVV 144 (166)
Q Consensus 90 gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv 144 (166)
...|+.++ -+-.|+...| .|..||++ .+.+|.-.+..++ ||.+.+..=+
T Consensus 31 ~~~P~~~~--a~~~l~~~i~-~~~~Ld~k-~rELI~Lavs~~n--gC~yCl~~H~ 79 (133)
T 1vke_A 31 SRGTLNTK--RFFNLDSAVY-RPGKLDVK-TKELMGLVASTVL--RCDDCIRYHL 79 (133)
T ss_dssp CCSCHHHH--HHHHHHHHTT-SCSSSCHH-HHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HhCHHHHH--HHHHHHHHHH-ccCCCCHH-HHHHHHHHHHHHc--CCHHHHHHHH
Confidence 35566542 2235677777 46788887 4556655554444 6776665433
No 135
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=24.16 E-value=2.6e+02 Score=23.96 Aligned_cols=73 Identities=8% Similarity=0.129 Sum_probs=47.6
Q ss_pred HHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhH-----hhhhchHHHHHH
Q psy10447 36 FLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYI-----KDEILPPFFKNF 108 (166)
Q Consensus 36 FLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yi-----r~~i~~~FF~~F 108 (166)
|.+-|-.+|=--|-..-.-+.+.+-..+...|+.-+++-|..+++++-+|+--.+++..+- -+.+..+||+.=
T Consensus 203 ~r~~ii~~ILATDm~~Hf~~l~~~~~~~~~~~~~~~~~~r~lll~~lik~ADis~~~rp~~~~~~W~~~l~eEF~~Qg 280 (359)
T 2r8q_A 203 AYRALIDCVLATDMAKHADALSRFTELATSGFEKDNDTHRRLVMETLIKAGDVSNVTKPFETSRMWAMAVTEEFYRQG 280 (359)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHTGGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHhhcccCcCcHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHH
Confidence 4444444444445433333455555556678888899999999999999999888887651 234555555543
No 136
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=23.90 E-value=71 Score=24.78 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhH--HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhc
Q psy10447 16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEY--ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCA 87 (166)
Q Consensus 16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~ey--A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~ 87 (166)
.+++.+..|+..--.|..++.|.++..++.-..+.. ..-..+.++..|..-++++|.+.|..-..++-.+-.
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 345555556655556667777777776665432221 223445677778888888888888887777655443
No 137
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=23.60 E-value=36 Score=26.57 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=28.9
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHh
Q psy10447 107 NFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIE 163 (166)
Q Consensus 107 ~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~ 163 (166)
+.|.||.|..-.. .-.++-+...+++-+-..+.|+..--|+++--+++
T Consensus 137 ~~w~rR~ai~~~l---------~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr 184 (220)
T 2b6c_A 137 NFWNRRVALNLQL---------MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLR 184 (220)
T ss_dssp SHHHHHHHHHTTT---------TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---------HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 5899999987432 22334455555554444667777777777655554
No 138
>3s0a_A OBP14; all helical protein, unknown odorant molecules, antennae, TR protein; 1.15A {Apis mellifera} PDB: 3rzs_A 3s0b_A* 3s0d_A* 3s0e_A* 3s0f_A 3s0g_A
Probab=23.43 E-value=55 Score=22.89 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHhhhcccCcchhhH
Q psy10447 71 DEEMKKIVLKVVKQCCATDGVEAQYI 96 (166)
Q Consensus 71 DeEMKkiVLkVv~qc~~t~gv~~~yi 96 (166)
.||||..+..+...|...-||+.+-+
T Consensus 3 ~ee~~~~~~~~~~~C~~e~gvs~e~i 28 (119)
T 3s0a_A 3 IEELKTRLHTEQSVCKTETGIDQQKA 28 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 47999999999999999999998764
No 139
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.65 E-value=1.5e+02 Score=23.61 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhccc---------------CcchhhHhhhhchHHHHHHHHH
Q psy10447 51 YANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATD---------------GVEAQYIKDEILPPFFKNFWNH 111 (166)
Q Consensus 51 yA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~---------------gv~~~yir~~i~~~FF~~FW~r 111 (166)
.--.|...++.-+.+.|++....++.-|.+...+..... ...++-+|.-|+| -.+.||++
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP-~l~~~~~~ 179 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIRE-HAEEYKRT 179 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhc-CHHHHHHH
Confidence 566788889999999999999999999998888765543 2445667777775 45777743
No 140
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=22.63 E-value=4.5e+02 Score=24.13 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=67.8
Q ss_pred hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCC----------hhHHhhhHHHHHHHHHhhcCCC--------c-H
Q psy10447 12 ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMD----------AEYANYYTKEVMLILIREFQSP--------D-E 72 (166)
Q Consensus 12 EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD----------~eyA~yYt~evm~il~rEF~SP--------D-e 72 (166)
+.+.++|.-+-.++...--++-.+--.|+..++-..| .++-.=|...+|..|..-++.. + |
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 4456666666665543211223444466777666544 3444456778888777766663 1 3
Q ss_pred HHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHhhC
Q psy10447 73 EMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNH-RMALDRRNYRQLVDTTVEIANKVG 135 (166)
Q Consensus 73 EMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~r-R~AlDr~~~~~vv~TTv~lA~Kvg 135 (166)
.+=+++-.|+..+ .+.+.| |. +.+++..+..+..- ....|+.....+.++--.|++..|
T Consensus 572 ~l~~al~~vv~~~--~~~~~p-~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~ 631 (960)
T 1wa5_C 572 FLMRSIFRVLQTS--EDSIQP-LF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ 631 (960)
T ss_dssp HHHHHHHHHHHHH--TTTTGG-GH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHH--HHhhhh-HH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 3334444454433 478888 64 57777666544421 234466655567788777777644
No 141
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=22.34 E-value=31 Score=26.55 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=29.5
Q ss_pred HHHHHhhhcchHHHHHHHH--hhhcccCChhHHhhhHHHHHHHHHhhcCCC
Q psy10447 22 WKGIRTHRGKGLAAFLKAI--GYLIPLMDAEYANYYTKEVMLILIREFQSP 70 (166)
Q Consensus 22 W~Gir~hRGK~LAaFLKai--G~IIPLMD~eyA~yYt~evm~il~rEF~SP 70 (166)
|.-+..++.+.-..+-+.+ ..+.+.|-+-|+.+||.|=+.-|+.=|+||
T Consensus 45 ~~~~~~~~~k~~~~~~k~~s~~~l~~~~~~iY~~~fT~~El~~l~~FY~sp 95 (147)
T 3oao_A 45 KAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSP 95 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCH
Confidence 3333344445555555555 456666667777777777666676666666
No 142
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=21.90 E-value=41 Score=27.48 Aligned_cols=29 Identities=14% Similarity=-0.047 Sum_probs=24.9
Q ss_pred CccccCCcchhhhhhhhHHHHHHHHhhhc
Q psy10447 2 TDIHCHTLSIESFDSVLKPLWKGIRTHRG 30 (166)
Q Consensus 2 ~~~as~PYGIEsFd~VL~plW~Gir~hRG 30 (166)
.|-+-.|||..+.|.+.+-+++.++.-..
T Consensus 39 ~D~a~~PYG~~~~~~i~~~~~~~~~~L~~ 67 (268)
T 3out_A 39 GDIARIPYGTKSRATIQKFAAQTAKFLID 67 (268)
T ss_dssp ECTTTCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999998876543
No 143
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.37 E-value=1.3e+02 Score=28.34 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=54.9
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHh
Q psy10447 18 LKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIK 97 (166)
Q Consensus 18 L~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir 97 (166)
-+-|+++|...|...|..||-|+| ||-.-+.-|. .|.+.|.|=|.=|.. -..++...+||.+.- -
T Consensus 493 a~nLl~aIe~sk~~~l~R~L~alg--i~~VG~~~Ak--------~La~~Fgsl~~l~~A----s~eeL~~i~GIG~~~-A 557 (671)
T 2owo_A 493 AQNVVNALEKAKETTFARFLYALG--IREVGEATAA--------GLAAYFGTLEALEAA----SIEELQKVPDVGIVV-A 557 (671)
T ss_dssp HHHHHHHHHHHTBCCHHHHHHHTT--CTTCCHHHHH--------HHHHHHCSHHHHHTC----CHHHHTTSTTCCHHH-H
T ss_pred HHHHHHHHHHHhcCChhheehhhc--ccCccHHHHH--------HHHHHcCCHHHHHhC----CHHHHhhcCCCCHHH-H
Confidence 456789999999999999999988 6777654433 466667664332211 234677788998863 3
Q ss_pred hhhchHHHHHHHHHHhh
Q psy10447 98 DEILPPFFKNFWNHRMA 114 (166)
Q Consensus 98 ~~i~~~FF~~FW~rR~A 114 (166)
+.|. .||.+=||+.+.
T Consensus 558 ~sI~-~ff~~~~~~~~i 573 (671)
T 2owo_A 558 SHVH-NFFAEESNRNVI 573 (671)
T ss_dssp HHHH-HHHTCHHHHHHH
T ss_pred HHHH-HHHHhHHHHHHH
Confidence 4444 788877776554
No 144
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=21.20 E-value=1.7e+02 Score=24.35 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=60.2
Q ss_pred hhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHH-------HHHHHHHhhhhhhhhh
Q psy10447 49 AEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFF-------KNFWNHRMALDRRNYR 121 (166)
Q Consensus 49 ~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF-------~~FW~rR~AlDr~~~~ 121 (166)
+-+.++=..+++.+..+=+++|-++-|-.-...+-|. .+ .+ ++++ |. .+|=+|-++.+.
T Consensus 62 ~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---~~-----~~L~-~ir~~va~D~~WrVre~lA~a---- 127 (240)
T 3l9t_A 62 TDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---DK-----EILI-FMRDEVSKDNNWRVQEVLAKA---- 127 (240)
T ss_dssp HHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---SH-----HHHH-HHHHTGGGCSCHHHHHHHHHH----
T ss_pred HHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---cH-----HHHH-HHHHHhCCCCCccHHHHHHHH----
Confidence 4555555677778777788888888886666666655 21 11 2221 22 222244443322
Q ss_pred HHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHH
Q psy10447 122 QLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESI 162 (166)
Q Consensus 122 ~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti 162 (166)
--+++...|....+..+..-++|+|+-.||.|.|..
T Consensus 128 -----~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 128 -----FDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp -----HHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHT
T ss_pred -----HHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 223444556666788889999999999999999985
No 145
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=21.14 E-value=1.5e+02 Score=23.46 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHHhhhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhC
Q psy10447 70 PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVG 135 (166)
Q Consensus 70 PDeEMKkiVLkVv~qc~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg 135 (166)
....||.++..-+.+....-++.++-+ ...-.+|..|-.+. ...++....+.-|.+-||-|+-
T Consensus 52 i~~~~R~~lv~wl~~v~~~~~l~~~tl--~lAv~~lDRfls~~-~v~~~~lqlv~~acL~iAsK~E 114 (271)
T 2w96_A 52 VLPSMRKIVATWMLEVCEEQKCEEEVF--PLAMNYLDRFLSLE-PVKKSRLQLLGATCMFVASKMK 114 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCTTHH--HHHHHHHHHHHTTS-CCCTTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCchhHH--HHHHHHHHHhCCcC-CcCHHHHHHHHHHHHHHHHHHh
Confidence 357899999998888877777776644 23334666666554 3455566667789999999973
No 146
>3q8i_A Odorant binding protein; 2.00A {Anopheles gambiae}
Probab=21.07 E-value=97 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHhhhcccCcchhhH
Q psy10447 71 DEEMKKIVLKVVKQCCATDGVEAQYI 96 (166)
Q Consensus 71 DeEMKkiVLkVv~qc~~t~gv~~~yi 96 (166)
.|+||+.+-.+..+|...-||+.+.+
T Consensus 3 ~~~~~~~~~~~~~~C~~e~gv~~~~~ 28 (124)
T 3q8i_A 3 MKQLTNSMDMMRQACAPKFKVEEAEL 28 (124)
T ss_dssp HHHHHHHHHHHHHHHGGGSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHH
Confidence 48999999999999999999998765
No 147
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=21.05 E-value=1.8e+02 Score=28.02 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=37.7
Q ss_pred hhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhccccc-----ch--HHHHHHHHHHHhhc
Q psy10447 99 EILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKD-----EN--EQYRKMVMESIEKT 165 (166)
Q Consensus 99 ~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKD-----es--E~~R~M~~eti~kv 165 (166)
++++++++.+= -++++......+-.--.|.| .|...++..|...+.. ++ ...|..|+.|+.++
T Consensus 436 ~~v~~i~~~l~---~~~~~~~~~~~~~~LkaLGN-~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~ 505 (1056)
T 1lsh_A 436 ELLQPLHDLLS---QSSDRAKEEEIVLALKALGN-AGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI 505 (1056)
T ss_dssp GGTHHHHHHHH---HHHHTTCHHHHHHHHHHHHH-HTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHH---HHHhcCChHHHHHHHHHhhc-cCChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHh
Confidence 34555555432 34444444444444455666 8888888777777642 33 34667788888765
No 148
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=20.75 E-value=2.9e+02 Score=21.18 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHhhhcchHHHHHHHHhhh-ccc--------CChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q psy10447 14 FDSVLKPLWKGIRTHRGKGLAAFLKAIGYL-IPL--------MDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQ 84 (166)
Q Consensus 14 Fd~VL~plW~Gir~hRGK~LAaFLKaiG~I-IPL--------MD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~q 84 (166)
.-+-..|+|+.+.+|. |++.++.= +|. =|-.|-..|.+-+...+. .+||.+.++..++.+..
T Consensus 15 l~~~~~~~w~~~~~HP------Fv~~l~~GtL~~~~f~~YL~QDy~yl~~f~r~~a~~~~---ka~~~~~~~~l~~~~~~ 85 (221)
T 2gm8_A 15 LRRRADGIWQRILAHP------FVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAAS---RAPSVDLMKTALELAYG 85 (221)
T ss_dssp HHHHTHHHHHHHHTCH------HHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---TCSSHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHCCH------HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHH
Confidence 4455679999998883 44444221 110 033445555665555554 37888877777776655
Q ss_pred h-----------hcccCcchhhHh
Q psy10447 85 C-----------CATDGVEAQYIK 97 (166)
Q Consensus 85 c-----------~~t~gv~~~yir 97 (166)
+ +..-||+++-+.
T Consensus 86 ~i~~E~~lh~~~~~~~Gi~~~~~~ 109 (221)
T 2gm8_A 86 TVTGEMANYEALLKEVGLSLRDAA 109 (221)
T ss_dssp HHHTHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHh
Confidence 3 344577665443
No 149
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=20.70 E-value=98 Score=26.21 Aligned_cols=61 Identities=16% Similarity=0.376 Sum_probs=34.5
Q ss_pred HHHhhhcccCcchhhHhhhhchH-HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhc
Q psy10447 81 VVKQCCATDGVEAQYIKDEILPP-FFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVD 145 (166)
Q Consensus 81 Vv~qc~~t~gv~~~yir~~i~~~-FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~ 145 (166)
||+.|....+..+.+ |+.|+.. |-.+++ .++.+| -.--||+..++.|..---..|++.|+.
T Consensus 233 VIQ~iL~~~~~~e~~-r~~ii~~~l~~~~~--~Ls~~k-~gS~Vvek~l~~~~~~~r~~ii~el~~ 294 (382)
T 3v71_A 233 VIQYVIKSSGIMEMY-RDTIIDKCLLRNLL--SMSQDK-YASHVIEGAFLFAPPALLHEMMEEIFS 294 (382)
T ss_dssp HHHHHHTCCSTHHHH-HHHHHHHTTTTCHH--HHTTST-THHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCcHHH-HHHHHHHHHHHHHH--HHhcCc-hHhHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455555444443334 6777765 444443 566676 455677877776654444556666654
No 150
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=20.56 E-value=2.3e+02 Score=19.98 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=59.5
Q ss_pred hhhhhhhhHHHHHHHHhhhc---chHHHHHHHHhhhcccCChhHHhhhH--------HHHHHHHH-hhcCCCcHHHHHHH
Q psy10447 11 IESFDSVLKPLWKGIRTHRG---KGLAAFLKAIGYLIPLMDAEYANYYT--------KEVMLILI-REFQSPDEEMKKIV 78 (166)
Q Consensus 11 IEsFd~VL~plW~Gir~hRG---K~LAaFLKaiG~IIPLMD~eyA~yYt--------~evm~il~-rEF~SPDeEMKkiV 78 (166)
-+.+...++.+|..|+++.. +-+| -.|.-|.=..++.+||. ..|-.-|. +++.|+ +|...-|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s-----~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~-~~f~~D~ 79 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLIS-----ELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSI-HAMAKDI 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTT-----GGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCccc-----HHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCH-HHHHHHH
Confidence 46677889999999998754 3333 12223432336778886 45554444 456665 5788999
Q ss_pred HHHHHhhhcccCcchhhH-hhhhchHHHHHHH
Q psy10447 79 LKVVKQCCATDGVEAQYI-KDEILPPFFKNFW 109 (166)
Q Consensus 79 LkVv~qc~~t~gv~~~yi-r~~i~~~FF~~FW 109 (166)
..++.+|..=-|-...+. --..+..+|..=|
T Consensus 80 ~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~ 111 (120)
T 3ljw_A 80 DLLAKNAKTYNEPGSQVFKDANSIKKIFYMKK 111 (120)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998777655443 3345555665544
No 151
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.55 E-value=90 Score=22.43 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHhhhhh--hhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHH
Q psy10447 110 NHRMALDR--RNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMES 161 (166)
Q Consensus 110 ~rR~AlDr--~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~et 161 (166)
.||.||+- .-+.++-+..- -++.-+..||-+|+.+|.+|-++
T Consensus 28 ~Rr~AL~eaL~EN~~Lh~~ie----------~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 28 QRRKALYEALKENEKLHKEIE----------QKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888865 23344433322 22444667899999999988764
No 152
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.51 E-value=1.1e+02 Score=20.26 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcc
Q psy10447 102 PPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDD 146 (166)
Q Consensus 102 ~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~ 146 (166)
-.|+...| ++..||++ .+.+|...+. .-.||.+.+..=+..
T Consensus 20 ~~l~~~~~-~~~~L~~~-~reLi~l~vs--~~ngc~~c~~~H~~~ 60 (96)
T 3bey_A 20 KNFREAVR-SEGKLTER-EKLLISVACS--VAVRCDACTRRHAEE 60 (96)
T ss_dssp HHHHHHHH-TCSSSCHH-HHHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCCHH-HHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence 35666667 46778887 5555555553 445788777554433
No 153
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=20.44 E-value=2.1e+02 Score=22.77 Aligned_cols=27 Identities=4% Similarity=0.112 Sum_probs=17.5
Q ss_pred HHHHHhhcCCCcH--HHHHHHHHHHHhhh
Q psy10447 60 MLILIREFQSPDE--EMKKIVLKVVKQCC 86 (166)
Q Consensus 60 m~il~rEF~SPDe--EMKkiVLkVv~qc~ 86 (166)
++.|++-.+|+|+ +.+......++.++
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~ 38 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHEC 38 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 3456777777777 66666666666544
No 154
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=20.29 E-value=5.2e+02 Score=24.40 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=57.9
Q ss_pred HhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcch------------------hhH-hhhhchHHH-----HH
Q psy10447 52 ANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEA------------------QYI-KDEILPPFF-----KN 107 (166)
Q Consensus 52 A~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~------------------~yi-r~~i~~~FF-----~~ 107 (166)
+..=-+-++.+|.+. .-|.|+=|.||-.+-+....++-+. .++ +.+-++..+ ..
T Consensus 58 g~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d 135 (651)
T 3grl_A 58 GIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD 135 (651)
T ss_dssp HHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC
T ss_pred hhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc
Confidence 333345566666665 3788999999988865443332211 111 111122222 35
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHh--hCHHHHHHHhhcccccchHHHHHHHHHHHh
Q psy10447 108 FWNHRMALDRRNYRQLVDTTVEIANK--VGASEIINRVVDDLKDENEQYRKMVMESIE 163 (166)
Q Consensus 108 FW~rR~AlDr~~~~~vv~TTv~lA~K--vg~~~il~~iv~~lKDesE~~R~M~~eti~ 163 (166)
||+|..|+-- -..+..+--+-.++ +.+..=+.+||..|+|.+|+.|--++-.+.
T Consensus 136 f~vR~~alql--L~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~ 191 (651)
T 3grl_A 136 FHVRWPGVKL--LTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQ 191 (651)
T ss_dssp HHHHHHHHHH--HHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7888777521 22222111111111 112345678999999999999998776554
No 155
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=20.27 E-value=8.1 Score=30.55 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=21.4
Q ss_pred CcchhhhhhhhH--HHHHHHHhhhcchHHHHHHHH
Q psy10447 8 TLSIESFDSVLK--PLWKGIRTHRGKGLAAFLKAI 40 (166)
Q Consensus 8 PYGIEsFd~VL~--plW~Gir~hRGK~LAaFLKai 40 (166)
-|+|+-+..-=. -.|.|+|+|+.+. ||+++
T Consensus 13 ~~Siddl~~~~~~~~~WdGVRNyqArN---~mr~M 44 (155)
T 1zce_A 13 KWSWEMQKAKGETGEEWTGVRNYQARN---NMRAM 44 (155)
T ss_dssp TSCHHHHHHHGGGCEECCCCCCHHHHH---HHHTC
T ss_pred cCCHHHHHhcCcccceecCcccHHHHH---HHHhc
Confidence 377777765222 2399999999987 99853
No 156
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=20.04 E-value=3.3e+02 Score=23.15 Aligned_cols=62 Identities=24% Similarity=0.432 Sum_probs=45.9
Q ss_pred HHHHHhhhcchHHHHHH-----HHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchhhH
Q psy10447 22 WKGIRTHRGKGLAAFLK-----AIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYI 96 (166)
Q Consensus 22 W~Gir~hRGK~LAaFLK-----aiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~yi 96 (166)
|.-++.--.+.||.||+ -+..|+--++|+.|+.. +. .| |++--..+++|+ ...++|+|+-+
T Consensus 110 ~~~L~~~dp~~la~~i~~EhPQtiAlILs~L~p~~AA~v----L~----~L--p~~~r~ev~~Ri----a~l~~v~p~~l 175 (329)
T 3hjl_A 110 LKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEI----IQ----NL--PEELKKEVVKRI----ATLENVNVQYV 175 (329)
T ss_dssp HHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHH----HH----TS--CHHHHHHHHHHH----HHCSCCCHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHH----HH----hC--CHHHHHHHHHHH----HccCCCCHHHH
Confidence 99999999999999996 58889999999998742 22 22 444444444554 45889999876
Q ss_pred h
Q psy10447 97 K 97 (166)
Q Consensus 97 r 97 (166)
+
T Consensus 176 ~ 176 (329)
T 3hjl_A 176 K 176 (329)
T ss_dssp H
T ss_pred H
Confidence 4
Done!