RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10447
(166 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 70.8 bits (173), Expect = 4e-15
Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 27/162 (16%)
Query: 12 ESFDSVLKPLWKG-IRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSP 70
F ++K L G T R F + + AE L + F++
Sbjct: 125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE------------LRQYFRNL 172
Query: 71 DEEMKKIVLKVVKQCCA--TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQL--VDT 126
+ +V + +E +K EI+P F +A D ++ +L V+
Sbjct: 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF------SNLASDEQDSVRLLAVEA 226
Query: 127 TVEIANKVGASEIINRVVDDLK----DENEQYRKMVMESIEK 164
V IA + ++ V+ L+ D++ + R MV + +
Sbjct: 227 CVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268
Score = 33.1 bits (75), Expect = 0.036
Identities = 13/132 (9%), Positives = 44/132 (33%), Gaps = 5/132 (3%)
Query: 33 LAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVE 92
+ + + ++ ++ ++ ++ + ++ +++ + GVE
Sbjct: 380 RLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436
Query: 93 AQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENE 152
+ +++ +H A+ L + + + II +V+ D N
Sbjct: 437 --FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY 494
Query: 153 QYRKMVMESIEK 164
+R + I
Sbjct: 495 LHRMTTLFCINV 506
Score = 26.1 bits (57), Expect = 6.2
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 140 INRVVDDLKDENEQYRKMVMESI 162
I ++D+L++E+ Q R ++ +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKL 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 1e-04
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 53/164 (32%)
Query: 3 DIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLI 62
++ C L + T R K + FL A +D EV +
Sbjct: 263 NLSCKIL-------L---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 63 L-----IREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDR 117
L R P E+ + + A+ I+D W+
Sbjct: 307 LLKYLDCRPQDLP-REVLTTNPRRLSII-------AESIRD------GLATWD------- 345
Query: 118 RNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQ--YRKMVM 159
N++ + +K+ + II ++ L+ + + ++ +
Sbjct: 346 -NWKHVN------CDKL--TTIIESSLNVLEPAEYRKMFDRLSV 380
Score = 35.2 bits (80), Expect = 0.007
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 88 TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRV---V 144
+ E QY +IL F F ++ D ++ + + + EI + + + + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 145 DDLKDENEQYRKMVMESIEKTN 166
L + E+ + +E + + N
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRIN 90
Score = 32.1 bits (72), Expect = 0.072
Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 26/141 (18%)
Query: 6 CHTLSIESFDSVLKP---LWKGIRTHRGKGLAAFLKA-IGYLIPLMDAEYANYY------ 55
+ + ++ W + L +++ + L P AEY +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVF 381
Query: 56 ------TKEVMLILIREFQSPDEEMKKIVLKVVKQCCAT-DGVEAQY----IKDEILPPF 104
++ ++ + ++ +V K+ K E+ I E+
Sbjct: 382 PPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 105 FKNFWNHRMALDRRNYRQLVD 125
+ HR +D N + D
Sbjct: 440 ENEYALHRSIVDHYNIPKTFD 460
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.003
Identities = 21/143 (14%), Positives = 56/143 (39%), Gaps = 26/143 (18%)
Query: 33 LAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS---PDEEMKKIVLKVVKQCCATD 89
+ FL GY+ L++ + +V+ + + EF++ ++ + K++++ T
Sbjct: 61 VGKFL---GYVSSLVEPSKVGQFD-QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 90 GVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEI---------I 140
+ I KN+ R+ R ++ + G +++
Sbjct: 117 VKTKELI---------KNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQGNT 166
Query: 141 NRVVDDLKDENEQYRKMVMESIE 163
+ ++L+D + Y +V + I+
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIK 189
Score = 35.8 bits (82), Expect = 0.005
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 62/173 (35%)
Query: 32 GLAAF--LKAIGYLIPLMDA-------EY-ANYYTKEVMLILIREFQSPDEEMKKIVLKV 81
AAF LK+ G LIP EY A +VM +S +++V
Sbjct: 1740 EKAAFEDLKSKG-LIPADATFAGHSLGEYAALASLADVM-----SIES--------LVEV 1785
Query: 82 VKQCCATDGVEAQYIKDEILPPFFKNFWNHRMA----------LDRRNYRQLVDTT---- 127
V G+ Q +P N+ M + + +V+
Sbjct: 1786 VFY----RGMTMQ----VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 128 ---VEIAN------------KVGASEIINRVVDDLKDENEQYRKM-VMESIEK 164
VEI N + A + + V++ +K + ++ S+E+
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB:
2vps_A 2vpm_A
Length = 652
Score = 27.8 bits (61), Expect = 1.8
Identities = 10/77 (12%), Positives = 22/77 (28%)
Query: 34 AAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEA 93
F++ G + E E + ++ I ++ Q +D
Sbjct: 243 RLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEKLR 302
Query: 94 QYIKDEILPPFFKNFWN 110
+ E P ++ W
Sbjct: 303 LFAIPEEFWPRIRHSWK 319
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme
A, isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 27.1 bits (60), Expect = 3.0
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 26 RTHRGKGL-----AAFLKAIGYLIP 45
R + + FL IGYL+P
Sbjct: 69 RRRVIEPIDMDAYRQFLTEIGYLLP 93
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 27.0 bits (60), Expect = 3.2
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 26 RTHRGKGL-----AAFLKAIGYLIP 45
R++ G +FL+ +GYL+P
Sbjct: 69 RSNPGPVKDKAAYKSFLRELGYLVP 93
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 26.8 bits (58), Expect = 5.0
Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 37 LKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYI 96
L A+ L+ ++ E+ Y + L ++ E +V G + +
Sbjct: 629 LMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEY------QVCLAAVGLVGDLCRAL 681
Query: 97 KDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRK 156
+ I+P + + L + V + K + + + E ++Y +
Sbjct: 682 QSNIIP--------FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE 733
Query: 157 MVMESIEK 164
+V+ ++++
Sbjct: 734 VVLNTLQQ 741
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM;
2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3
Length = 720
Score = 26.2 bits (58), Expect = 6.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 1 MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLA 34
TD ESF +VL+P+ I T + +
Sbjct: 559 QTDT-------ESF-AVLEPIHDAIATGSSRTMR 584
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule
biogenesis/degradation, manganese, hydrolase,
exopolysaccharide synthesis; 1.90A {Streptococcus
pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Length = 247
Score = 25.7 bits (56), Expect = 7.9
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 1 MTDIHCHTL 9
M DIH H +
Sbjct: 5 MIDIHSHIV 13
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 25.7 bits (56), Expect = 8.8
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 4 IHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLIL 63
+H H I+ + K + IRT GK + ++ I M Y K+ I
Sbjct: 46 LHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIA 105
Query: 64 IR 65
+
Sbjct: 106 MM 107
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Arabidopsis thaliana} PDB:
2dcp_A
Length = 140
Score = 25.0 bits (54), Expect = 9.5
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 41 GYL---IPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCA 87
Y I + KE +++ + +K+ L+++K
Sbjct: 29 VYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG 78
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 25.5 bits (55), Expect = 9.8
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 4 IHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLIL 63
++ + ++ V K + +R+ GK A+ + LM A + K++ +IL
Sbjct: 39 LNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMIL 98
Query: 64 IREFQSP 70
+P
Sbjct: 99 SMMDINP 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.401
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,666,750
Number of extensions: 160573
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 34
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)