RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10447
(166 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 32.1 bits (72), Expect = 0.024
Identities = 15/135 (11%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 28 HRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCA 87
H A +AI +I + + Q + ++ + L+ + +
Sbjct: 294 HSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFL---QHRETNLRYLALESMCTLAS 350
Query: 88 TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDL 147
++ + +K I +++ ++ VD + ++ A +I+ ++ L
Sbjct: 351 SEFSH-EAVKTHIETVINALKTERDVSV----RQRAVDLLYAMCDRSNAQQIVAEMLSYL 405
Query: 148 KDENEQYRKMVMESI 162
+ + R+ ++ +
Sbjct: 406 ETADYSIREEIVLKV 420
Score = 27.1 bits (59), Expect = 1.2
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 31 KGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPD----EEMKKIVLKVVKQCC 86
+GLA F+ I KE+ I +F+ KK V K++
Sbjct: 3 RGLAVFISDIRNCKSK--EAEIKRINKELANIR-SKFKGDKALDGYSKKKYVCKLL--FI 57
Query: 87 ATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYR---QLVDTTVEIANKVGASEIINRV 143
G + + E + ++R + Y LV++ E+ I N +
Sbjct: 58 FLLGHDIDFGHMEAV----NLLSSNRYTEKQIGYLFISVLVNSNSELIR-----LINNAI 108
Query: 144 VDDLKDENEQYRKMVMESI 162
+DL N + + + I
Sbjct: 109 KNDLASRNPTFMGLALHCI 127
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 28.9 bits (63), Expect = 0.33
Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 21/163 (12%)
Query: 9 LSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQ 68
L++ +++L L + + ++ + A+ + I + K + ++ +
Sbjct: 955 LTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLE 1013
Query: 69 SPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRR----NYRQLV 124
PD ++++ L + + D +LP + N R L R ++ V
Sbjct: 1014 DPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY-NETKVRKELIREVEMGPFKHTV 1072
Query: 125 DTTVEI---------------ANKVGASEIINRVVDDLKDENE 152
D ++I +++ E +N V D LKD +
Sbjct: 1073 DDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYD 1115
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId:
562]}
Length = 101
Score = 27.4 bits (61), Expect = 0.40
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 129 EIANKVGAS-EIINRVVDDLKDENEQYRKMVMESIEKTN 166
E+ N++GA I R + LK + R+ + E + K++
Sbjct: 63 ELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 101
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 28.2 bits (61), Expect = 0.58
Identities = 16/128 (12%), Positives = 45/128 (35%), Gaps = 15/128 (11%)
Query: 39 AIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKD 98
A+ L+ ++ E+ Y + I + ++ + +V C D
Sbjct: 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD 690
Query: 99 EILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMV 158
E++ +N L + V + K + + + E ++Y ++V
Sbjct: 691 EVMQLLLEN---------------LGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVV 735
Query: 159 MESIEKTN 166
+ ++++ +
Sbjct: 736 LNTLQQAS 743
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 27.1 bits (58), Expect = 1.3
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 56 TKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVE-----AQYIKDEILPP------- 103
T E +L SPD+ ++ +K+ + ++ +Q + DE
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAA 62
Query: 104 -FFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESI 162
KN + ++ + + Q T V K ++I + L + + I
Sbjct: 63 LTLKNELVSKDSVKTQQFAQRWITQVSPEAK---NQIKTNALTALVSIEPRIANAAAQLI 119
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase
{Porphyromonas gingivalis [TaxId: 837]}
Length = 339
Score = 25.8 bits (56), Expect = 3.1
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 109 WNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIE 163
W H ++ V IA + E + V D K + +
Sbjct: 18 WPHDRTDWAYMLDEVETCFVRIATAILRHERLIVVCPDRKRVFGLLPPELHHRLY 72
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 364
Score = 24.7 bits (53), Expect = 7.3
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 109 WNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIE 163
W R R + + + +A + +N VV + + R+ + I
Sbjct: 30 WPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQ--QQFQNCRRQLPPEIT 82
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 24.5 bits (53), Expect = 7.4
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 107 NFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
+++ + D + +L DT E V EI+++ ++ K + +Y + V +++EK
Sbjct: 431 DYYR-SLPADEKE--RLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVKKALEK 485
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.401
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,985
Number of extensions: 30736
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 26
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)