Query psy10448
Match_columns 1001
No_of_seqs 570 out of 2964
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:25:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384|consensus 100.0 3E-138 7E-143 1227.0 45.3 700 134-978 280-1037(1373)
2 KOG0385|consensus 100.0 1E-113 3E-118 976.2 43.0 493 237-841 158-655 (971)
3 KOG0386|consensus 100.0 1.1E-94 2.4E-99 842.3 30.9 484 231-828 379-877 (1157)
4 PLN03142 Probable chromatin-re 100.0 1.6E-92 3.5E-97 871.9 49.4 492 234-840 158-652 (1033)
5 KOG0391|consensus 100.0 2.7E-93 5.8E-98 827.6 32.3 476 245-829 612-1428(1958)
6 KOG0389|consensus 100.0 1.2E-92 2.7E-97 808.6 36.8 471 235-813 387-914 (941)
7 KOG0387|consensus 100.0 1.6E-90 3.4E-95 792.8 37.2 479 246-832 203-701 (923)
8 KOG0388|consensus 100.0 8.2E-91 1.8E-95 778.4 28.7 463 234-811 556-1178(1185)
9 KOG0392|consensus 100.0 8.7E-84 1.9E-88 759.0 35.8 488 245-829 972-1495(1549)
10 KOG0383|consensus 100.0 3.3E-80 7.1E-85 724.7 15.9 542 75-704 153-696 (696)
11 KOG0390|consensus 100.0 5.8E-76 1.3E-80 694.0 42.4 476 245-829 235-748 (776)
12 KOG1002|consensus 100.0 4.2E-73 9.1E-78 616.9 27.5 517 245-828 181-789 (791)
13 KOG1015|consensus 100.0 1.9E-70 4.2E-75 628.6 29.6 487 246-839 666-1326(1567)
14 KOG4439|consensus 100.0 7.8E-70 1.7E-74 613.8 29.7 506 245-828 322-899 (901)
15 COG0553 HepA Superfamily II DN 100.0 1.5E-64 3.2E-69 643.7 34.7 480 245-830 335-865 (866)
16 KOG1016|consensus 100.0 3.5E-59 7.7E-64 526.7 23.9 513 246-832 252-892 (1387)
17 KOG1000|consensus 100.0 2.4E-55 5.2E-60 479.8 29.4 414 247-807 197-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 3.9E-53 8.5E-58 521.8 37.4 421 244-810 148-628 (956)
19 KOG1001|consensus 100.0 7.3E-54 1.6E-58 510.9 21.2 476 251-809 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 4.1E-43 8.9E-48 391.2 27.3 275 252-546 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 1.5E-37 3.3E-42 371.9 36.3 347 246-795 253-615 (732)
22 KOG0298|consensus 100.0 1.1E-36 2.3E-41 365.0 19.0 259 266-545 373-690 (1394)
23 PRK13766 Hef nuclease; Provisi 100.0 1.6E-33 3.5E-38 353.6 31.0 430 245-803 12-495 (773)
24 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-28 2.5E-33 275.0 34.3 446 244-807 11-501 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 2E-28 4.3E-33 286.3 32.4 367 245-799 33-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 2.1E-27 4.5E-32 282.9 34.9 326 246-740 112-444 (501)
27 PTZ00110 helicase; Provisional 99.9 3E-23 6.5E-28 249.1 29.7 307 248-738 152-474 (545)
28 PRK11776 ATP-dependent RNA hel 99.9 5.3E-23 1.2E-27 243.7 31.2 304 248-738 26-339 (460)
29 PRK04837 ATP-dependent RNA hel 99.9 7.9E-23 1.7E-27 239.6 31.2 306 248-738 30-352 (423)
30 PRK11192 ATP-dependent RNA hel 99.9 1.1E-22 2.4E-27 239.3 31.4 310 247-740 22-344 (434)
31 KOG0354|consensus 99.9 1.3E-22 2.9E-27 239.0 31.8 396 244-737 58-519 (746)
32 TIGR00614 recQ_fam ATP-depende 99.9 5.3E-23 1.1E-27 243.8 27.0 303 248-740 11-325 (470)
33 PRK10590 ATP-dependent RNA hel 99.9 1.2E-22 2.7E-27 239.8 29.7 306 248-739 23-343 (456)
34 PLN00206 DEAD-box ATP-dependen 99.9 1.2E-22 2.6E-27 243.2 29.5 306 247-738 142-465 (518)
35 PRK01297 ATP-dependent RNA hel 99.9 3.8E-22 8.2E-27 237.2 31.9 308 248-739 109-433 (475)
36 PRK11634 ATP-dependent RNA hel 99.9 3.6E-22 7.9E-27 242.1 31.3 309 247-740 27-344 (629)
37 PTZ00424 helicase 45; Provisio 99.9 5.1E-22 1.1E-26 231.3 31.0 307 248-738 50-364 (401)
38 PRK04537 ATP-dependent RNA hel 99.9 4.9E-22 1.1E-26 239.6 30.7 307 248-739 31-355 (572)
39 PRK11057 ATP-dependent DNA hel 99.9 1.7E-21 3.7E-26 237.1 29.4 301 248-740 25-335 (607)
40 TIGR01389 recQ ATP-dependent D 99.9 3.2E-21 6.8E-26 235.1 28.8 301 248-740 13-323 (591)
41 PRK11448 hsdR type I restricti 99.9 8.3E-21 1.8E-25 240.7 31.9 108 639-756 699-815 (1123)
42 TIGR00643 recG ATP-dependent D 99.9 8.8E-21 1.9E-25 231.8 28.9 160 244-428 231-399 (630)
43 KOG1123|consensus 99.9 1.9E-21 4.2E-26 214.3 19.7 342 246-791 300-657 (776)
44 KOG0331|consensus 99.9 8.4E-21 1.8E-25 218.0 23.5 311 248-738 113-438 (519)
45 PRK10917 ATP-dependent DNA hel 99.9 1.2E-20 2.6E-25 232.1 26.7 159 245-428 258-422 (681)
46 PLN03137 ATP-dependent DNA hel 99.9 1.6E-20 3.4E-25 230.8 25.2 308 247-742 459-781 (1195)
47 TIGR00580 mfd transcription-re 99.9 2.9E-20 6.3E-25 231.9 26.1 301 245-738 448-760 (926)
48 KOG0330|consensus 99.9 1.4E-20 3E-25 203.2 20.0 303 248-736 83-395 (476)
49 TIGR03817 DECH_helic helicase/ 99.8 2.9E-19 6.3E-24 220.9 30.3 316 248-740 36-378 (742)
50 PRK10689 transcription-repair 99.8 1E-19 2.2E-24 231.7 26.4 301 245-738 597-909 (1147)
51 PRK13767 ATP-dependent helicas 99.8 3E-19 6.5E-24 225.0 29.3 127 640-778 286-419 (876)
52 COG0513 SrmB Superfamily II DN 99.8 8.4E-19 1.8E-23 209.0 27.4 309 247-738 50-370 (513)
53 PRK02362 ski2-like helicase; P 99.8 1.2E-17 2.7E-22 208.3 27.2 158 247-435 22-189 (737)
54 TIGR01587 cas3_core CRISPR-ass 99.8 5.6E-17 1.2E-21 186.2 26.8 109 639-758 223-337 (358)
55 PRK01172 ski2-like helicase; P 99.8 3.9E-17 8.6E-22 202.2 26.9 158 245-434 19-186 (674)
56 TIGR00348 hsdR type I site-spe 99.8 1.3E-16 2.9E-21 195.6 30.8 157 246-428 236-405 (667)
57 COG1200 RecG RecG-like helicas 99.8 1.3E-17 2.8E-22 194.5 20.4 314 244-739 258-582 (677)
58 KOG0345|consensus 99.8 1.7E-16 3.6E-21 175.5 26.0 308 248-740 28-356 (567)
59 KOG0350|consensus 99.8 1.6E-17 3.5E-22 184.5 18.1 98 639-739 430-531 (620)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.4E-16 3E-21 194.0 27.4 95 640-739 274-381 (844)
61 KOG0328|consensus 99.7 2.6E-17 5.5E-22 171.1 16.5 304 250-739 51-364 (400)
62 COG0514 RecQ Superfamily II DN 99.7 1.3E-16 2.8E-21 186.9 22.2 301 248-740 17-329 (590)
63 COG4096 HsdR Type I site-speci 99.7 1.7E-16 3.7E-21 187.1 23.1 342 245-738 162-528 (875)
64 PRK00254 ski2-like helicase; P 99.7 5.3E-16 1.2E-20 193.2 27.1 157 248-435 23-187 (720)
65 KOG0335|consensus 99.7 3.8E-16 8.3E-21 176.9 20.4 99 639-740 338-436 (482)
66 KOG0340|consensus 99.7 5.2E-16 1.1E-20 166.4 20.0 308 248-740 29-353 (442)
67 KOG0342|consensus 99.7 1.6E-16 3.5E-21 176.9 16.4 99 639-740 331-429 (543)
68 PRK09751 putative ATP-dependen 99.7 1.4E-15 3E-20 195.1 26.8 93 640-735 246-371 (1490)
69 COG1201 Lhr Lhr-like helicases 99.7 3.4E-15 7.4E-20 181.0 28.7 309 246-736 20-350 (814)
70 TIGR03714 secA2 accessory Sec 99.7 2.5E-16 5.5E-21 189.9 18.5 93 642-740 428-529 (762)
71 KOG0333|consensus 99.7 8.4E-16 1.8E-20 171.7 20.8 334 248-740 267-616 (673)
72 KOG0348|consensus 99.7 1.5E-15 3.3E-20 169.8 21.9 98 640-740 427-546 (708)
73 KOG4284|consensus 99.7 6.6E-16 1.4E-20 175.4 18.6 344 249-782 48-402 (980)
74 PHA02653 RNA helicase NPH-II; 99.7 4.1E-15 8.9E-20 180.2 26.8 118 640-790 397-517 (675)
75 TIGR03158 cas3_cyano CRISPR-as 99.7 8.8E-15 1.9E-19 167.4 27.8 83 639-733 273-357 (357)
76 KOG0338|consensus 99.7 4.3E-16 9.4E-21 173.2 16.1 94 640-736 428-521 (691)
77 PRK09401 reverse gyrase; Revie 99.7 1E-14 2.2E-19 186.7 28.8 131 245-400 77-214 (1176)
78 KOG0343|consensus 99.7 8.3E-15 1.8E-19 164.4 24.3 310 247-740 90-414 (758)
79 PF04851 ResIII: Type III rest 99.7 4.5E-16 9.7E-21 160.3 13.0 161 247-426 2-183 (184)
80 PRK12898 secA preprotein trans 99.7 9.5E-15 2.1E-19 174.5 24.7 96 640-740 475-578 (656)
81 PRK09200 preprotein translocas 99.7 6.9E-15 1.5E-19 179.2 23.2 95 641-740 431-533 (790)
82 KOG0326|consensus 99.6 3.7E-16 8E-21 164.9 10.2 310 249-745 108-426 (459)
83 PRK14701 reverse gyrase; Provi 99.6 5.5E-14 1.2E-18 183.7 31.3 148 641-803 333-538 (1638)
84 TIGR00963 secA preprotein tran 99.6 2.8E-15 6.2E-20 179.8 15.3 93 643-740 410-509 (745)
85 PRK05580 primosome assembly pr 99.6 1.8E-14 3.8E-19 177.2 22.2 155 246-426 142-305 (679)
86 COG4889 Predicted helicase [Ge 99.6 9.9E-15 2.1E-19 170.0 16.9 174 245-425 158-350 (1518)
87 KOG0347|consensus 99.6 4.4E-14 9.5E-19 158.8 21.4 151 638-810 463-614 (731)
88 COG1205 Distinct helicase fami 99.6 5.7E-14 1.2E-18 174.9 23.4 314 247-739 69-413 (851)
89 KOG0336|consensus 99.6 2.5E-14 5.5E-19 155.3 16.7 100 637-739 464-563 (629)
90 COG1204 Superfamily II helicas 99.6 7.2E-14 1.6E-18 171.7 22.3 160 248-437 31-200 (766)
91 KOG0341|consensus 99.6 4.1E-15 8.8E-20 160.3 9.5 95 641-738 424-518 (610)
92 KOG0346|consensus 99.6 2.6E-14 5.6E-19 157.0 15.6 98 640-740 270-402 (569)
93 TIGR01054 rgy reverse gyrase. 99.6 3.3E-13 7.1E-18 173.2 27.3 133 245-401 75-213 (1171)
94 KOG0332|consensus 99.6 1.3E-13 2.7E-18 149.0 19.7 97 641-740 333-435 (477)
95 COG1197 Mfd Transcription-repa 99.5 7.1E-13 1.5E-17 163.1 26.3 299 245-736 591-901 (1139)
96 KOG0344|consensus 99.5 1.3E-13 2.8E-18 157.5 18.4 97 641-740 390-487 (593)
97 TIGR01970 DEAH_box_HrpB ATP-de 99.5 5.3E-13 1.2E-17 165.7 25.4 77 640-719 211-290 (819)
98 KOG0339|consensus 99.5 4E-13 8.7E-18 149.6 20.9 96 640-738 470-565 (731)
99 TIGR00595 priA primosomal prot 99.5 6.9E-13 1.5E-17 157.7 23.9 130 272-426 2-140 (505)
100 PRK09694 helicase Cas3; Provis 99.5 3.2E-12 6.9E-17 158.9 29.5 95 641-738 563-665 (878)
101 cd00079 HELICc Helicase superf 99.5 5.9E-14 1.3E-18 136.2 11.0 96 639-737 29-124 (131)
102 smart00487 DEXDc DEAD-like hel 99.5 1.1E-13 2.4E-18 143.1 13.7 158 246-428 6-173 (201)
103 PF00271 Helicase_C: Helicase 99.5 1.7E-14 3.7E-19 127.8 6.2 78 656-736 1-78 (78)
104 PRK11664 ATP-dependent RNA hel 99.5 3.1E-12 6.7E-17 159.3 26.2 76 641-719 215-293 (812)
105 cd00046 DEXDc DEAD-like helica 99.5 4.9E-13 1.1E-17 130.1 13.6 136 269-425 2-144 (144)
106 COG1202 Superfamily II helicas 99.5 1.6E-12 3.6E-17 146.8 18.8 304 247-736 215-539 (830)
107 KOG0327|consensus 99.4 1.4E-12 3.1E-17 142.4 15.3 106 642-750 267-372 (397)
108 TIGR00631 uvrb excinuclease AB 99.4 1.2E-11 2.5E-16 150.8 23.2 96 638-736 442-542 (655)
109 PRK12906 secA preprotein trans 99.4 1.4E-12 3E-17 158.3 13.1 93 643-740 445-545 (796)
110 PRK13104 secA preprotein trans 99.4 1.6E-11 3.5E-16 149.8 21.2 164 567-795 425-592 (896)
111 COG4098 comFA Superfamily II D 99.4 1.9E-10 4.2E-15 123.7 26.4 299 246-738 95-404 (441)
112 smart00490 HELICc helicase sup 99.4 1.3E-12 2.8E-17 115.8 7.6 81 653-736 2-82 (82)
113 KOG0351|consensus 99.4 1.2E-11 2.7E-16 153.3 18.6 307 247-740 263-584 (941)
114 PRK11131 ATP-dependent RNA hel 99.3 2.1E-10 4.6E-15 145.7 27.0 73 640-717 288-363 (1294)
115 KOG0334|consensus 99.3 3.7E-11 7.9E-16 145.7 18.8 94 640-736 615-708 (997)
116 KOG0952|consensus 99.3 6.7E-11 1.5E-15 142.2 20.7 162 262-455 121-310 (1230)
117 PRK05298 excinuclease ABC subu 99.3 2.8E-10 6E-15 139.8 26.2 95 638-735 446-545 (652)
118 PRK12904 preprotein translocas 99.3 8E-11 1.7E-15 143.7 20.3 139 643-795 435-578 (830)
119 cd00268 DEADc DEAD-box helicas 99.3 5.7E-11 1.2E-15 125.1 15.5 155 248-426 21-185 (203)
120 PF08074 CHDCT2: CHDCT2 (NUC03 99.3 1.2E-12 2.7E-17 125.9 2.1 44 940-983 130-173 (173)
121 PF00270 DEAD: DEAD/DEAH box h 99.3 4.6E-11 9.9E-16 121.6 13.7 157 251-432 2-168 (169)
122 PRK13107 preprotein translocas 99.2 2.8E-10 6E-15 138.7 18.7 152 568-781 431-587 (908)
123 TIGR01967 DEAH_box_HrpA ATP-de 99.2 1.6E-09 3.4E-14 138.4 24.9 121 640-791 281-408 (1283)
124 KOG0337|consensus 99.2 7.9E-11 1.7E-15 129.4 10.1 106 640-748 263-368 (529)
125 COG1203 CRISPR-associated heli 99.2 2.1E-09 4.5E-14 133.9 23.2 126 636-803 438-568 (733)
126 KOG0353|consensus 99.2 2.5E-09 5.4E-14 115.6 20.1 345 248-784 94-466 (695)
127 PRK12900 secA preprotein trans 99.1 1.8E-09 3.9E-14 132.3 20.6 99 637-740 597-703 (1025)
128 TIGR01407 dinG_rel DnaQ family 99.1 3.5E-09 7.7E-14 134.4 24.1 124 640-780 676-809 (850)
129 KOG0352|consensus 99.1 6.7E-09 1.5E-13 114.3 21.0 95 642-739 259-353 (641)
130 PF11496 HDA2-3: Class II hist 99.1 8.7E-10 1.9E-14 121.9 14.3 222 491-799 4-257 (297)
131 COG0556 UvrB Helicase subunit 99.0 1.4E-07 3E-12 107.4 25.6 100 634-736 442-546 (663)
132 PF06465 DUF1087: Domain of Un 98.9 5E-10 1.1E-14 92.9 3.3 56 841-896 7-62 (66)
133 PRK12899 secA preprotein trans 98.9 1.4E-07 3.1E-12 115.6 25.8 146 249-437 93-252 (970)
134 PRK12326 preprotein translocas 98.9 5.1E-08 1.1E-12 116.7 21.4 115 568-739 409-538 (764)
135 PF13872 AAA_34: P-loop contai 98.9 6.4E-08 1.4E-12 105.4 19.1 233 246-509 35-302 (303)
136 PF00385 Chromo: Chromo (CHRro 98.8 2.3E-09 5E-14 88.3 3.6 53 140-192 1-55 (55)
137 KOG0951|consensus 98.8 1.1E-07 2.3E-12 116.6 18.5 156 265-445 323-502 (1674)
138 KOG0947|consensus 98.8 3.2E-07 7E-12 110.0 21.1 144 244-425 293-444 (1248)
139 COG1110 Reverse gyrase [DNA re 98.7 1.2E-06 2.5E-11 106.7 22.9 129 245-399 79-215 (1187)
140 PRK13103 secA preprotein trans 98.7 3E-07 6.5E-12 112.8 18.3 138 245-425 79-229 (913)
141 PRK12903 secA preprotein trans 98.6 1.6E-06 3.5E-11 105.5 20.2 93 643-740 431-531 (925)
142 COG4581 Superfamily II RNA hel 98.6 7.6E-07 1.7E-11 110.8 17.3 148 244-425 115-270 (1041)
143 TIGR00604 rad3 DNA repair heli 98.6 1.6E-06 3.4E-11 108.4 20.4 72 248-319 10-82 (705)
144 PRK07246 bifunctional ATP-depe 98.5 4.2E-06 9.1E-11 105.5 21.7 122 642-780 651-778 (820)
145 COG1198 PriA Primosomal protei 98.5 7.6E-06 1.6E-10 99.9 22.6 155 247-426 197-360 (730)
146 TIGR00596 rad1 DNA repair prot 98.5 1.5E-06 3.2E-11 108.1 16.0 118 367-512 9-135 (814)
147 PRK08074 bifunctional ATP-depe 98.5 5.6E-05 1.2E-09 97.1 30.2 125 642-780 756-888 (928)
148 PRK15483 type III restriction- 98.5 1E-06 2.2E-11 109.5 13.2 148 268-426 60-239 (986)
149 TIGR03117 cas_csf4 CRISPR-asso 98.4 5.6E-05 1.2E-09 91.7 27.0 79 253-332 2-86 (636)
150 KOG0948|consensus 98.4 4.9E-06 1.1E-10 97.9 16.9 142 246-425 127-276 (1041)
151 KOG0329|consensus 98.4 1.8E-06 3.9E-11 89.8 11.1 125 249-399 65-197 (387)
152 cd00024 CHROMO Chromatin organ 98.4 4.4E-07 9.5E-12 74.5 4.5 51 138-190 2-53 (55)
153 KOG0949|consensus 98.3 3.8E-05 8.2E-10 92.9 21.5 164 247-438 510-682 (1330)
154 COG1199 DinG Rad3-related DNA 98.3 1.2E-05 2.6E-10 100.1 17.3 125 640-780 481-612 (654)
155 KOG0349|consensus 98.3 1.5E-06 3.3E-11 96.0 7.8 96 638-736 505-603 (725)
156 COG0610 Type I site-specific r 98.2 4.9E-06 1.1E-10 106.2 12.3 140 266-429 272-417 (962)
157 CHL00122 secA preprotein trans 98.2 9E-06 2E-10 99.7 13.7 61 643-707 429-490 (870)
158 PF06461 DUF1086: Domain of Un 98.2 1.2E-06 2.6E-11 84.1 4.1 46 928-984 26-71 (145)
159 PF07652 Flavi_DEAD: Flaviviru 98.2 1.3E-05 2.9E-10 78.2 10.7 129 266-426 3-137 (148)
160 KOG0950|consensus 98.1 9.1E-05 2E-09 90.3 17.7 168 248-445 223-406 (1008)
161 PRK12901 secA preprotein trans 98.1 0.00034 7.4E-09 87.0 22.4 98 636-739 626-732 (1112)
162 smart00489 DEXDc3 DEAD-like he 98.0 4E-05 8.6E-10 85.4 13.0 74 247-320 7-84 (289)
163 smart00488 DEXDc2 DEAD-like he 98.0 4E-05 8.6E-10 85.4 13.0 74 247-320 7-84 (289)
164 KOG1513|consensus 98.0 0.00013 2.9E-09 86.3 17.4 238 246-510 262-537 (1300)
165 smart00298 CHROMO Chromatin or 98.0 3.7E-06 8E-11 68.9 2.9 49 142-191 4-52 (55)
166 PF13871 Helicase_C_4: Helicas 98.0 2.1E-05 4.5E-10 85.8 9.3 100 679-810 52-151 (278)
167 KOG0920|consensus 97.9 0.0029 6.3E-08 78.9 25.9 125 639-792 414-549 (924)
168 KOG0923|consensus 97.9 0.00064 1.4E-08 79.7 18.9 102 665-792 509-611 (902)
169 PF02399 Herpes_ori_bp: Origin 97.8 0.0013 2.7E-08 80.5 19.9 91 640-739 284-380 (824)
170 KOG0922|consensus 97.8 0.0017 3.7E-08 77.0 20.3 125 641-791 261-394 (674)
171 PRK12902 secA preprotein trans 97.7 0.0014 3.1E-08 80.8 19.9 123 245-399 82-217 (939)
172 KOG0924|consensus 97.7 0.0022 4.7E-08 75.5 20.3 103 663-794 598-704 (1042)
173 COG1643 HrpA HrpA-like helicas 97.7 0.0019 4.2E-08 80.5 21.0 124 641-790 262-390 (845)
174 PF13086 AAA_11: AAA domain; P 97.6 0.00029 6.3E-09 75.2 10.3 68 248-319 1-75 (236)
175 KOG0953|consensus 97.5 0.00064 1.4E-08 78.5 11.5 85 631-719 351-436 (700)
176 COG3587 Restriction endonuclea 97.4 0.00065 1.4E-08 82.0 11.0 137 266-425 73-242 (985)
177 TIGR02562 cas3_yersinia CRISPR 97.4 0.037 8E-07 69.9 25.3 182 249-432 409-641 (1110)
178 KOG0925|consensus 97.3 0.0048 1E-07 70.3 15.6 73 693-793 315-393 (699)
179 KOG0390|consensus 97.3 0.00015 3.2E-09 88.5 3.5 31 710-740 667-697 (776)
180 PF00271 Helicase_C: Helicase 97.2 0.00012 2.6E-09 64.5 1.1 33 741-773 46-78 (78)
181 COG0653 SecA Preprotein transl 97.2 0.014 3.1E-07 72.0 18.7 116 566-738 409-535 (822)
182 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.005 1.1E-07 67.4 13.1 123 245-399 74-209 (266)
183 KOG0926|consensus 97.1 0.007 1.5E-07 72.7 14.7 108 262-398 266-383 (1172)
184 PF02562 PhoH: PhoH-like prote 97.0 0.0039 8.4E-08 65.6 9.7 153 249-430 5-160 (205)
185 PRK10536 hypothetical protein; 96.8 0.0043 9.4E-08 67.1 8.9 154 249-429 60-216 (262)
186 PRK11747 dinG ATP-dependent DN 96.7 0.0079 1.7E-07 75.2 11.0 126 638-780 534-669 (697)
187 PF13401 AAA_22: AAA domain; P 96.6 0.0035 7.7E-08 60.7 5.9 117 266-425 3-125 (131)
188 smart00490 HELICc helicase sup 96.5 0.0011 2.5E-08 58.0 1.7 33 741-773 50-82 (82)
189 PF13307 Helicase_C_2: Helicas 96.4 0.0062 1.3E-07 62.3 6.2 127 638-780 9-145 (167)
190 KOG1802|consensus 96.3 0.011 2.3E-07 69.9 8.5 75 248-330 410-485 (935)
191 PF12340 DUF3638: Protein of u 96.3 0.024 5.2E-07 60.3 10.2 73 245-320 20-92 (229)
192 KOG1131|consensus 96.2 0.02 4.4E-07 65.9 9.2 61 247-307 15-75 (755)
193 PRK14873 primosome assembly pr 96.1 0.02 4.3E-07 70.7 9.9 127 276-426 169-304 (665)
194 KOG1002|consensus 96.0 0.0033 7.1E-08 71.6 2.1 32 709-740 708-739 (791)
195 PF09848 DUF2075: Uncharacteri 95.9 0.026 5.6E-07 64.9 9.1 48 270-318 4-52 (352)
196 PF13604 AAA_30: AAA domain; P 95.9 0.071 1.5E-06 56.0 11.3 58 248-310 1-58 (196)
197 TIGR00376 DNA helicase, putati 95.8 0.038 8.2E-07 68.4 10.4 68 247-320 156-224 (637)
198 KOG1803|consensus 95.8 0.045 9.7E-07 64.7 10.1 65 246-316 183-248 (649)
199 smart00492 HELICc3 helicase su 95.8 0.047 1E-06 54.2 8.9 101 666-780 26-133 (141)
200 KOG1911|consensus 95.4 0.013 2.8E-07 64.8 3.7 56 136-193 45-100 (270)
201 COG0553 HepA Superfamily II DN 95.3 0.0081 1.8E-07 77.4 2.3 181 246-447 82-289 (866)
202 TIGR01447 recD exodeoxyribonuc 95.2 0.14 3E-06 62.7 12.1 139 251-427 148-297 (586)
203 TIGR01448 recD_rel helicase, p 95.2 0.12 2.6E-06 65.0 11.9 136 245-428 320-455 (720)
204 KOG1132|consensus 95.1 0.096 2.1E-06 64.3 10.3 41 246-286 19-59 (945)
205 cd00009 AAA The AAA+ (ATPases 95.0 0.25 5.4E-06 47.7 11.4 40 267-309 19-58 (151)
206 PRK07003 DNA polymerase III su 94.9 0.18 3.9E-06 62.2 11.8 41 253-293 21-64 (830)
207 COG3421 Uncharacterized protei 94.8 0.1 2.2E-06 61.5 8.8 106 273-399 3-124 (812)
208 smart00491 HELICc2 helicase su 94.7 0.11 2.4E-06 51.6 7.8 118 651-780 4-134 (142)
209 PRK10875 recD exonuclease V su 94.6 0.13 2.9E-06 63.0 9.8 142 249-428 153-304 (615)
210 KOG2748|consensus 94.6 0.013 2.8E-07 64.3 0.9 48 141-191 12-59 (369)
211 KOG4150|consensus 94.5 0.07 1.5E-06 62.0 6.4 94 643-739 530-631 (1034)
212 PLN03025 replication factor C 94.3 0.37 7.9E-06 54.7 12.0 41 253-293 18-60 (319)
213 PRK12723 flagellar biosynthesi 94.2 0.54 1.2E-05 54.5 13.2 131 269-442 176-314 (388)
214 KOG1001|consensus 94.2 0.0091 2E-07 73.4 -1.4 32 709-740 609-640 (674)
215 TIGR02881 spore_V_K stage V sp 94.1 0.18 3.8E-06 55.5 8.7 28 268-295 43-70 (261)
216 PRK04296 thymidine kinase; Pro 93.9 0.15 3.2E-06 53.3 7.3 34 270-306 5-38 (190)
217 PRK09112 DNA polymerase III su 93.7 0.35 7.6E-06 55.5 10.4 42 253-294 28-72 (351)
218 PRK14956 DNA polymerase III su 93.7 0.39 8.4E-06 56.9 10.8 42 253-294 23-67 (484)
219 KOG1133|consensus 93.1 0.84 1.8E-05 55.1 12.1 128 639-783 630-777 (821)
220 KOG0951|consensus 92.9 0.36 7.9E-06 61.4 9.2 110 264-404 1156-1270(1674)
221 COG1875 NYN ribonuclease and A 92.5 0.38 8.3E-06 54.1 7.9 61 246-308 225-286 (436)
222 smart00382 AAA ATPases associa 92.4 0.4 8.8E-06 45.6 7.3 44 267-313 2-45 (148)
223 PRK14949 DNA polymerase III su 92.4 0.82 1.8E-05 57.7 11.4 42 253-294 21-65 (944)
224 PRK12323 DNA polymerase III su 92.2 1.1 2.4E-05 54.7 12.1 25 269-293 40-64 (700)
225 TIGR03015 pepcterm_ATPase puta 92.0 0.69 1.5E-05 50.8 9.4 43 249-291 24-67 (269)
226 TIGR02880 cbbX_cfxQ probable R 92.0 0.38 8.3E-06 53.6 7.3 38 268-305 59-97 (284)
227 CHL00181 cbbX CbbX; Provisiona 91.7 0.48 1E-05 52.9 7.7 37 269-305 61-98 (287)
228 PRK07764 DNA polymerase III su 91.6 5.9 0.00013 50.6 18.0 24 270-293 40-63 (824)
229 PRK11747 dinG ATP-dependent DN 91.5 1.1 2.4E-05 56.3 11.6 84 246-331 23-117 (697)
230 PRK05707 DNA polymerase III su 91.2 1.1 2.3E-05 51.1 10.0 48 248-295 3-50 (328)
231 PRK12402 replication factor C 91.2 0.67 1.5E-05 52.6 8.5 41 253-293 20-62 (337)
232 PRK14960 DNA polymerase III su 91.0 1.5 3.2E-05 53.8 11.3 41 253-293 20-63 (702)
233 PRK14952 DNA polymerase III su 90.6 1.4 3E-05 54.0 10.7 41 253-293 18-61 (584)
234 PRK06526 transposase; Provisio 90.4 0.74 1.6E-05 50.4 7.5 55 254-319 89-143 (254)
235 PRK14958 DNA polymerase III su 90.4 1.9 4.2E-05 52.1 11.6 42 253-294 21-65 (509)
236 PF13177 DNA_pol3_delta2: DNA 90.1 3.2 6.9E-05 42.1 11.4 46 253-298 2-50 (162)
237 PF13245 AAA_19: Part of AAA d 90.1 0.98 2.1E-05 39.7 6.6 44 267-311 10-55 (76)
238 PHA02533 17 large terminase pr 90.1 1.8 3.9E-05 52.5 11.1 55 247-306 58-112 (534)
239 TIGR03420 DnaA_homol_Hda DnaA 89.9 1.9 4.1E-05 45.9 10.1 29 266-294 37-65 (226)
240 TIGR02928 orc1/cdc6 family rep 89.9 4.6 0.0001 46.4 14.0 48 247-294 17-67 (365)
241 PRK07994 DNA polymerase III su 89.8 2.7 5.8E-05 52.0 12.4 42 253-294 21-65 (647)
242 PRK14961 DNA polymerase III su 89.6 2.2 4.8E-05 49.3 11.0 40 253-292 21-63 (363)
243 PRK14964 DNA polymerase III su 89.6 3.2 6.9E-05 49.7 12.4 41 253-293 18-61 (491)
244 PRK05703 flhF flagellar biosyn 89.4 2.9 6.3E-05 49.3 11.9 56 387-442 299-359 (424)
245 PRK08181 transposase; Validate 89.3 4.4 9.5E-05 44.8 12.5 47 249-295 88-134 (269)
246 PRK06645 DNA polymerase III su 88.6 2.8 6E-05 50.5 11.1 42 253-294 26-70 (507)
247 PRK07940 DNA polymerase III su 88.4 2.3 5E-05 49.6 10.0 26 269-294 38-63 (394)
248 PF06733 DEAD_2: DEAD_2; Inte 88.4 0.33 7.1E-06 49.9 2.7 39 363-401 117-159 (174)
249 PRK14955 DNA polymerase III su 88.4 3.3 7.1E-05 48.5 11.4 41 253-293 21-64 (397)
250 KOG0991|consensus 88.3 1.2 2.5E-05 47.3 6.6 29 265-293 46-74 (333)
251 KOG1805|consensus 88.1 1.7 3.7E-05 54.4 8.9 162 247-427 668-831 (1100)
252 PRK09111 DNA polymerase III su 87.9 2.9 6.2E-05 51.5 10.8 42 253-294 29-73 (598)
253 PRK14954 DNA polymerase III su 87.8 3 6.6E-05 51.4 11.0 41 253-293 21-64 (620)
254 PRK08451 DNA polymerase III su 87.7 3.1 6.8E-05 50.3 10.7 42 253-294 19-63 (535)
255 PRK14957 DNA polymerase III su 87.5 3.6 7.9E-05 49.9 11.2 41 253-293 21-64 (546)
256 PRK07471 DNA polymerase III su 87.4 3.9 8.5E-05 47.3 11.0 43 253-295 24-69 (365)
257 PRK11889 flhF flagellar biosyn 87.4 5.6 0.00012 46.1 11.9 125 269-439 243-376 (436)
258 PRK08691 DNA polymerase III su 87.1 7.2 0.00016 48.4 13.4 41 253-293 21-64 (709)
259 PRK14951 DNA polymerase III su 86.6 4.3 9.4E-05 50.0 11.3 42 253-294 21-65 (618)
260 PRK14962 DNA polymerase III su 86.6 3.5 7.6E-05 49.4 10.3 24 270-293 39-62 (472)
261 PRK14963 DNA polymerase III su 86.5 4 8.7E-05 49.3 10.9 43 253-295 19-64 (504)
262 PRK08769 DNA polymerase III su 86.5 4.9 0.00011 45.6 10.9 48 248-295 4-54 (319)
263 PRK00440 rfc replication facto 86.3 6.3 0.00014 44.2 11.9 39 254-292 23-63 (319)
264 PHA02544 44 clamp loader, smal 86.0 6 0.00013 44.6 11.5 41 387-427 100-142 (316)
265 PRK08058 DNA polymerase III su 85.8 3.7 8.1E-05 46.8 9.7 44 252-295 10-56 (329)
266 PRK08084 DNA replication initi 85.7 4.6 0.0001 43.6 10.0 27 267-293 45-71 (235)
267 PRK06871 DNA polymerase III su 85.6 5.2 0.00011 45.4 10.6 48 248-295 2-52 (325)
268 PRK14974 cell division protein 85.5 6.8 0.00015 44.7 11.5 47 269-318 142-192 (336)
269 PF05621 TniB: Bacterial TniB 85.4 6.3 0.00014 44.0 10.7 50 234-289 29-83 (302)
270 KOG0387|consensus 84.8 0.45 9.7E-06 58.0 1.6 47 741-811 612-658 (923)
271 TIGR02768 TraA_Ti Ti-type conj 84.8 5.1 0.00011 50.8 11.1 60 246-311 350-409 (744)
272 PRK08116 hypothetical protein; 84.7 6.7 0.00015 43.3 10.7 42 267-311 114-155 (268)
273 PF14061 Mtf2_C: Polycomb-like 84.2 1.2 2.6E-05 35.1 3.1 26 141-166 24-49 (50)
274 PRK14969 DNA polymerase III su 84.2 7.2 0.00016 47.4 11.6 41 253-293 21-64 (527)
275 COG3267 ExeA Type II secretory 83.7 7.2 0.00016 42.3 9.9 38 269-310 53-90 (269)
276 PRK14948 DNA polymerase III su 83.6 5.9 0.00013 49.1 10.7 42 253-294 21-65 (620)
277 cd01121 Sms Sms (bacterial rad 83.6 6.3 0.00014 45.7 10.3 50 267-319 82-131 (372)
278 PF13173 AAA_14: AAA domain 83.5 6.4 0.00014 38.0 8.9 26 267-292 2-27 (128)
279 PRK00411 cdc6 cell division co 82.8 19 0.00042 41.8 14.3 46 250-295 35-83 (394)
280 PRK06090 DNA polymerase III su 82.8 11 0.00024 42.7 11.6 49 247-295 2-53 (319)
281 PF00448 SRP54: SRP54-type pro 82.8 3.9 8.5E-05 42.9 7.5 134 270-441 4-141 (196)
282 KOG0330|consensus 82.7 6 0.00013 45.0 9.1 127 665-798 279-416 (476)
283 cd01120 RecA-like_NTPases RecA 82.4 11 0.00024 37.1 10.4 34 270-306 2-35 (165)
284 PRK06647 DNA polymerase III su 82.4 6.6 0.00014 48.1 10.3 42 253-294 21-65 (563)
285 TIGR00678 holB DNA polymerase 82.4 27 0.00059 36.0 13.7 26 269-294 16-41 (188)
286 PRK00149 dnaA chromosomal repl 82.3 7.2 0.00016 46.5 10.5 28 268-295 149-176 (450)
287 PRK07993 DNA polymerase III su 82.2 7.6 0.00016 44.4 10.1 48 248-295 2-52 (334)
288 KOG0989|consensus 82.0 3.8 8.2E-05 45.4 7.1 43 251-293 39-83 (346)
289 TIGR00362 DnaA chromosomal rep 81.5 8.6 0.00019 45.1 10.6 27 269-295 138-164 (405)
290 PRK14950 DNA polymerase III su 81.5 12 0.00026 46.2 12.3 40 253-292 21-63 (585)
291 PRK11192 ATP-dependent RNA hel 81.3 1.1 2.3E-05 53.2 3.0 41 741-781 308-348 (434)
292 PRK14953 DNA polymerase III su 81.1 10 0.00022 45.7 11.1 40 253-292 21-63 (486)
293 PRK14965 DNA polymerase III su 81.0 4.8 0.0001 49.5 8.6 42 253-294 21-65 (576)
294 KOG0952|consensus 81.0 1.6 3.4E-05 55.1 4.3 112 265-402 941-1061(1230)
295 PRK08727 hypothetical protein; 81.0 6.8 0.00015 42.3 8.8 26 269-294 43-68 (233)
296 PRK14959 DNA polymerase III su 80.9 11 0.00024 46.4 11.4 40 254-293 22-64 (624)
297 PRK13889 conjugal transfer rel 80.6 11 0.00024 49.0 11.7 61 245-311 343-403 (988)
298 PRK05896 DNA polymerase III su 80.5 14 0.0003 45.4 12.0 42 253-294 21-65 (605)
299 PF05876 Terminase_GpA: Phage 80.4 2.1 4.5E-05 52.4 5.1 164 246-436 14-190 (557)
300 COG0470 HolB ATPase involved i 80.3 6.2 0.00014 44.3 8.7 30 267-296 23-53 (325)
301 PF00580 UvrD-helicase: UvrD/R 80.3 3.5 7.6E-05 45.9 6.6 56 249-310 1-57 (315)
302 PLN00206 DEAD-box ATP-dependen 80.2 1.2 2.7E-05 54.0 3.0 45 741-787 431-475 (518)
303 PF06862 DUF1253: Protein of u 80.0 17 0.00037 42.9 12.1 92 637-730 299-391 (442)
304 PRK14722 flhF flagellar biosyn 79.9 11 0.00024 43.7 10.4 40 266-306 136-175 (374)
305 PRK04837 ATP-dependent RNA hel 79.8 1.1 2.3E-05 53.1 2.2 44 741-786 318-361 (423)
306 PRK14087 dnaA chromosomal repl 79.4 12 0.00026 44.6 11.0 43 268-311 142-184 (450)
307 PRK05563 DNA polymerase III su 79.4 20 0.00042 44.1 13.0 25 270-294 41-65 (559)
308 PRK01297 ATP-dependent RNA hel 79.3 1.4 3.1E-05 52.8 3.2 45 741-787 398-442 (475)
309 TIGR03345 VI_ClpV1 type VI sec 79.1 10 0.00022 49.0 10.8 41 253-293 192-234 (852)
310 PTZ00110 helicase; Provisional 79.0 2 4.2E-05 52.6 4.3 45 741-787 440-484 (545)
311 TIGR00614 recQ_fam ATP-depende 78.9 1.5 3.2E-05 52.6 3.2 41 741-781 289-329 (470)
312 PF00004 AAA: ATPase family as 78.8 5 0.00011 38.3 6.3 34 271-310 2-35 (132)
313 PHA03368 DNA packaging termina 78.6 4.8 0.0001 49.3 7.1 106 269-401 256-366 (738)
314 PRK07133 DNA polymerase III su 78.3 14 0.0003 46.4 11.2 42 253-294 23-67 (725)
315 PRK04195 replication factor C 78.3 16 0.00035 44.0 11.7 43 248-291 17-63 (482)
316 PRK13342 recombination factor 78.2 11 0.00023 44.5 10.0 24 268-291 37-60 (413)
317 PRK00771 signal recognition pa 77.8 16 0.00035 43.3 11.1 36 269-306 97-132 (437)
318 PRK04132 replication factor C 76.9 8 0.00017 49.3 8.8 52 387-438 630-682 (846)
319 PRK06305 DNA polymerase III su 76.1 20 0.00043 42.8 11.4 42 253-294 22-66 (451)
320 COG1435 Tdk Thymidine kinase [ 75.9 12 0.00025 39.1 8.1 108 271-424 8-118 (201)
321 PTZ00112 origin recognition co 75.6 21 0.00047 45.4 11.6 54 239-293 750-807 (1164)
322 PRK06893 DNA replication initi 75.3 20 0.00042 38.6 10.3 26 270-295 42-67 (229)
323 PRK05642 DNA replication initi 75.0 21 0.00046 38.5 10.5 26 268-293 46-71 (234)
324 PRK06964 DNA polymerase III su 74.9 13 0.00027 42.7 9.0 47 249-295 2-49 (342)
325 TIGR03346 chaperone_ClpB ATP-d 74.9 14 0.00031 47.7 10.6 41 253-293 178-220 (852)
326 PRK05986 cob(I)alamin adenolsy 74.8 18 0.00039 37.8 9.3 145 266-440 21-172 (191)
327 PRK11776 ATP-dependent RNA hel 74.6 2.1 4.6E-05 51.1 2.9 45 741-787 305-349 (460)
328 PRK14088 dnaA chromosomal repl 74.1 17 0.00037 43.2 10.3 36 269-305 132-167 (440)
329 PRK13826 Dtr system oriT relax 73.3 23 0.0005 46.6 11.7 60 246-311 379-438 (1102)
330 COG1484 DnaC DNA replication p 73.1 12 0.00027 40.9 8.1 64 252-318 90-153 (254)
331 PRK14086 dnaA chromosomal repl 72.9 26 0.00056 43.2 11.4 26 269-294 316-341 (617)
332 PRK14971 DNA polymerase III su 72.3 38 0.00083 42.0 13.0 40 253-292 22-64 (614)
333 PRK10865 protein disaggregatio 72.0 18 0.0004 46.7 10.5 38 256-293 186-225 (857)
334 PRK12422 chromosomal replicati 71.8 15 0.00033 43.6 9.1 35 268-305 142-176 (445)
335 PRK12727 flagellar biosynthesi 71.8 47 0.001 40.2 13.0 28 267-294 350-377 (559)
336 PTZ00424 helicase 45; Provisio 71.7 2.3 5E-05 49.6 2.2 45 741-787 330-374 (401)
337 PF01695 IstB_IS21: IstB-like 71.4 5.9 0.00013 40.9 4.9 47 265-318 45-91 (178)
338 TIGR02397 dnaX_nterm DNA polym 71.3 22 0.00048 40.6 10.2 42 253-294 19-63 (355)
339 TIGR01389 recQ ATP-dependent D 71.1 2.9 6.3E-05 51.7 3.0 40 741-780 287-326 (591)
340 PRK10590 ATP-dependent RNA hel 71.1 2.5 5.4E-05 50.5 2.3 44 741-786 308-351 (456)
341 CHL00095 clpC Clp protease ATP 71.1 22 0.00048 45.8 11.0 28 266-293 199-226 (821)
342 COG1474 CDC6 Cdc6-related prot 70.7 70 0.0015 37.1 13.9 50 247-296 19-71 (366)
343 PRK04537 ATP-dependent RNA hel 70.5 3.1 6.7E-05 51.2 3.0 44 741-786 320-363 (572)
344 KOG0298|consensus 70.3 1.1 2.4E-05 57.4 -0.9 124 636-803 1219-1342(1394)
345 PRK08699 DNA polymerase III su 70.0 29 0.00063 39.5 10.5 46 249-294 2-48 (325)
346 PRK03992 proteasome-activating 69.7 11 0.00024 44.0 7.2 40 266-311 164-203 (389)
347 PRK11057 ATP-dependent DNA hel 69.5 3.8 8.3E-05 50.8 3.5 40 741-780 299-338 (607)
348 COG0552 FtsY Signal recognitio 69.4 31 0.00066 39.1 10.0 124 270-431 142-275 (340)
349 COG4626 Phage terminase-like p 69.2 26 0.00057 42.1 10.1 65 243-307 56-127 (546)
350 COG3973 Superfamily I DNA and 68.7 8.3 0.00018 46.4 5.7 62 248-314 212-276 (747)
351 PRK11823 DNA repair protein Ra 68.7 19 0.00042 42.8 9.1 52 266-320 79-130 (446)
352 TIGR02639 ClpA ATP-dependent C 68.4 19 0.00041 45.8 9.4 29 266-294 202-230 (731)
353 PTZ00293 thymidine kinase; Pro 68.4 32 0.00068 36.6 9.5 34 271-307 8-41 (211)
354 COG1419 FlhF Flagellar GTP-bin 68.1 87 0.0019 36.5 13.6 135 267-443 203-341 (407)
355 PRK07952 DNA replication prote 68.0 21 0.00044 39.0 8.3 62 251-319 79-144 (244)
356 COG0593 DnaA ATPase involved i 68.0 22 0.00048 41.5 9.0 41 387-427 175-221 (408)
357 CHL00206 ycf2 Ycf2; Provisiona 67.7 16 0.00035 50.0 8.6 43 265-313 1628-1670(2281)
358 KOG0740|consensus 67.6 10 0.00022 44.4 6.1 47 268-320 187-233 (428)
359 TIGR02640 gas_vesic_GvpN gas v 67.4 14 0.0003 40.6 7.0 49 251-305 5-53 (262)
360 KOG0384|consensus 67.3 1.6 3.4E-05 55.9 -0.4 22 156-177 226-247 (1373)
361 cd03115 SRP The signal recogni 67.3 48 0.001 33.6 10.6 35 270-306 3-37 (173)
362 PRK11054 helD DNA helicase IV; 67.2 13 0.00029 46.6 7.6 69 247-321 195-265 (684)
363 PHA03372 DNA packaging termina 66.5 13 0.00028 45.2 6.8 107 266-401 202-313 (668)
364 PRK14970 DNA polymerase III su 66.5 43 0.00092 38.7 11.2 40 253-292 22-64 (367)
365 TIGR00603 rad25 DNA repair hel 66.4 3.4 7.3E-05 51.7 2.2 63 741-803 555-620 (732)
366 PTZ00454 26S protease regulato 66.4 15 0.00031 43.2 7.3 42 266-313 178-219 (398)
367 PRK07399 DNA polymerase III su 66.1 60 0.0013 36.8 11.9 43 253-295 9-54 (314)
368 COG2256 MGS1 ATPase related to 65.6 35 0.00075 39.5 9.6 23 268-290 49-71 (436)
369 PHA03333 putative ATPase subun 65.4 39 0.00085 41.9 10.6 57 252-311 173-230 (752)
370 cd01124 KaiC KaiC is a circadi 65.0 17 0.00038 37.1 6.9 48 270-320 2-49 (187)
371 TIGR01074 rep ATP-dependent DN 64.8 36 0.00077 42.8 10.9 66 249-320 2-69 (664)
372 cd00561 CobA_CobO_BtuR ATP:cor 64.4 26 0.00056 35.6 7.7 58 380-437 88-149 (159)
373 PRK06731 flhF flagellar biosyn 64.3 86 0.0019 34.7 12.4 46 268-316 76-125 (270)
374 PRK10919 ATP-dependent DNA hel 63.6 12 0.00027 46.9 6.4 57 248-310 2-59 (672)
375 TIGR01242 26Sp45 26S proteasom 63.4 16 0.00034 42.3 6.8 25 267-291 156-180 (364)
376 cd01128 rho_factor Transcripti 63.4 16 0.00034 40.0 6.4 24 265-288 14-37 (249)
377 PF01393 Chromo_shadow: Chromo 63.4 7.5 0.00016 32.4 3.0 26 140-166 3-28 (58)
378 TIGR03689 pup_AAA proteasome A 63.2 26 0.00055 42.4 8.6 27 266-292 215-241 (512)
379 TIGR03499 FlhF flagellar biosy 62.7 33 0.00072 38.2 9.0 26 269-294 196-221 (282)
380 TIGR00416 sms DNA repair prote 62.3 40 0.00086 40.3 10.0 52 266-320 93-144 (454)
381 CHL00176 ftsH cell division pr 62.1 36 0.00078 42.4 9.9 25 267-291 216-240 (638)
382 TIGR00708 cobA cob(I)alamin ad 61.9 20 0.00043 36.9 6.4 58 380-437 90-151 (173)
383 PRK06067 flagellar accessory p 61.9 38 0.00083 36.3 9.1 52 266-320 24-75 (234)
384 PRK11034 clpA ATP-dependent Cl 61.8 24 0.00053 44.8 8.5 28 266-293 206-233 (758)
385 cd00034 ChSh Chromo Shadow Dom 61.4 7.9 0.00017 31.7 2.7 31 141-174 1-31 (54)
386 KOG1133|consensus 61.2 15 0.00032 45.0 5.9 47 246-292 13-59 (821)
387 PRK11634 ATP-dependent RNA hel 61.0 6.3 0.00014 49.0 3.1 41 741-781 308-348 (629)
388 PRK13766 Hef nuclease; Provisi 60.3 4.9 0.00011 51.4 2.1 29 741-769 436-464 (773)
389 TIGR00595 priA primosomal prot 60.0 50 0.0011 40.0 10.5 72 643-718 30-102 (505)
390 PRK06835 DNA replication prote 59.6 28 0.00061 39.7 7.8 49 247-295 159-211 (329)
391 TIGR01243 CDC48 AAA family ATP 58.5 16 0.00035 46.4 6.3 42 266-313 486-527 (733)
392 PRK07276 DNA polymerase III su 58.0 41 0.00089 37.6 8.6 47 248-295 2-50 (290)
393 COG0464 SpoVK ATPases of the A 57.0 16 0.00034 44.1 5.6 67 248-320 249-323 (494)
394 PRK13709 conjugal transfer nic 57.0 75 0.0016 44.1 12.2 64 246-311 965-1029(1747)
395 PRK13341 recombination factor 57.0 38 0.00082 42.9 8.9 23 268-290 53-75 (725)
396 TIGR01547 phage_term_2 phage t 57.0 29 0.00062 40.6 7.6 37 270-306 4-40 (396)
397 KOG0739|consensus 56.6 32 0.00069 38.2 7.0 48 268-321 167-214 (439)
398 PRK10867 signal recognition pa 56.5 84 0.0018 37.3 11.2 36 270-306 103-138 (433)
399 TIGR01243 CDC48 AAA family ATP 56.3 40 0.00086 42.9 9.2 26 266-291 211-236 (733)
400 PRK06995 flhF flagellar biosyn 56.2 72 0.0016 38.3 10.6 25 270-294 259-283 (484)
401 TIGR03817 DECH_helic helicase/ 55.8 12 0.00027 47.5 4.5 53 741-795 342-394 (742)
402 PRK05580 primosome assembly pr 55.4 72 0.0016 40.2 11.1 72 643-718 195-267 (679)
403 TIGR01425 SRP54_euk signal rec 55.1 1.3E+02 0.0028 35.6 12.4 33 270-305 103-135 (429)
404 PRK14712 conjugal transfer nic 54.9 70 0.0015 43.9 11.2 63 247-311 834-897 (1623)
405 cd01125 repA Hexameric Replica 54.8 81 0.0018 33.9 10.2 38 269-306 3-49 (239)
406 PRK12724 flagellar biosynthesi 54.5 89 0.0019 36.9 10.8 22 270-291 226-247 (432)
407 PRK10917 ATP-dependent DNA hel 54.3 63 0.0014 40.8 10.4 74 643-719 315-393 (681)
408 KOG1807|consensus 53.8 39 0.00084 41.9 7.8 83 247-335 377-463 (1025)
409 PLN03137 ATP-dependent DNA hel 53.7 10 0.00022 49.5 3.2 42 741-782 743-784 (1195)
410 PF00308 Bac_DnaA: Bacterial d 53.5 73 0.0016 34.0 9.4 28 269-296 36-63 (219)
411 PRK10416 signal recognition pa 53.2 1.3E+02 0.0028 34.2 11.6 33 270-305 117-149 (318)
412 PRK05564 DNA polymerase III su 53.1 94 0.002 35.0 10.7 24 270-293 29-52 (313)
413 PRK14723 flhF flagellar biosyn 52.7 81 0.0018 40.0 10.7 24 270-293 188-211 (767)
414 PF01443 Viral_helicase1: Vira 52.5 28 0.0006 37.0 6.0 40 387-429 62-101 (234)
415 COG2812 DnaX DNA polymerase II 52.2 27 0.00059 42.0 6.3 42 253-294 21-65 (515)
416 PRK14721 flhF flagellar biosyn 51.8 1.1E+02 0.0024 36.1 11.1 55 387-442 269-328 (420)
417 TIGR01241 FtsH_fam ATP-depende 51.8 28 0.00061 42.1 6.5 24 267-290 88-111 (495)
418 COG1066 Sms Predicted ATP-depe 51.7 69 0.0015 37.3 9.0 88 270-402 96-183 (456)
419 PHA00012 I assembly protein 51.6 27 0.00059 39.4 5.7 25 271-295 5-29 (361)
420 PRK05973 replicative DNA helic 51.4 39 0.00085 36.6 6.9 53 263-318 60-112 (237)
421 PF06745 KaiC: KaiC; InterPro 51.2 35 0.00077 36.3 6.6 53 266-321 18-71 (226)
422 PRK09376 rho transcription ter 50.8 66 0.0014 37.6 8.8 29 266-294 168-196 (416)
423 TIGR01075 uvrD DNA helicase II 50.7 25 0.00053 44.7 6.0 67 248-320 4-72 (715)
424 PRK11773 uvrD DNA-dependent he 50.7 27 0.00059 44.3 6.4 56 248-309 9-65 (721)
425 TIGR00959 ffh signal recogniti 50.7 96 0.0021 36.7 10.5 37 269-306 101-137 (428)
426 PRK09087 hypothetical protein; 50.0 53 0.0012 35.3 7.7 36 389-424 89-125 (226)
427 KOG0780|consensus 50.0 38 0.00082 38.9 6.5 57 270-329 104-160 (483)
428 PRK12726 flagellar biosynthesi 49.6 1.2E+02 0.0025 35.5 10.5 46 268-316 207-256 (407)
429 CHL00195 ycf46 Ycf46; Provisio 49.4 28 0.0006 42.0 5.8 36 266-307 258-293 (489)
430 TIGR00767 rho transcription te 49.3 72 0.0016 37.4 8.9 28 265-292 166-193 (415)
431 PF06068 TIP49: TIP49 C-termin 49.1 23 0.0005 40.7 4.8 51 253-307 32-86 (398)
432 TIGR00150 HI0065_YjeE ATPase, 49.0 34 0.00074 33.6 5.4 32 260-291 15-46 (133)
433 TIGR02782 TrbB_P P-type conjug 48.7 35 0.00076 38.3 6.2 35 258-292 123-157 (299)
434 PRK08939 primosomal protein Dn 48.6 57 0.0012 36.8 7.9 40 256-295 143-184 (306)
435 TIGR02760 TraI_TIGR conjugativ 48.5 1.1E+02 0.0023 43.5 12.0 61 246-311 427-487 (1960)
436 PF12846 AAA_10: AAA-like doma 48.0 37 0.00081 37.3 6.4 44 267-313 1-44 (304)
437 PRK13833 conjugal transfer pro 47.0 41 0.00088 38.3 6.4 42 248-292 128-169 (323)
438 TIGR02760 TraI_TIGR conjugativ 46.3 89 0.0019 44.3 10.7 61 246-310 1017-1080(1960)
439 PRK12377 putative replication 45.3 73 0.0016 34.8 7.8 29 267-295 101-129 (248)
440 TIGR02655 circ_KaiC circadian 45.0 89 0.0019 37.7 9.3 52 266-320 262-313 (484)
441 TIGR00064 ftsY signal recognit 43.8 2E+02 0.0043 31.9 11.1 33 270-305 75-107 (272)
442 PF00437 T2SE: Type II/IV secr 43.7 32 0.00069 37.8 4.9 35 258-292 118-152 (270)
443 TIGR00643 recG ATP-dependent D 43.1 1.1E+02 0.0025 38.1 10.1 73 643-718 289-366 (630)
444 PF05970 PIF1: PIF1-like helic 42.9 56 0.0012 37.8 6.9 60 249-311 2-63 (364)
445 PF03237 Terminase_6: Terminas 42.9 1E+02 0.0022 34.8 9.2 34 368-402 79-112 (384)
446 KOG0386|consensus 42.5 22 0.00049 45.2 3.6 101 649-771 713-819 (1157)
447 PRK12608 transcription termina 42.4 1.4E+02 0.0031 34.6 9.8 38 256-294 123-160 (380)
448 PRK06921 hypothetical protein; 42.1 1E+02 0.0022 34.0 8.5 29 266-294 116-144 (266)
449 PHA00673 acetyltransferase dom 41.9 35 0.00077 34.4 4.4 44 388-431 88-134 (154)
450 KOG1015|consensus 41.8 12 0.00026 47.1 1.1 17 741-757 1231-1247(1567)
451 PRK13894 conjugal transfer ATP 41.7 55 0.0012 37.2 6.4 40 249-291 133-172 (319)
452 COG0513 SrmB Superfamily II DN 41.0 28 0.0006 42.3 4.2 57 741-800 336-392 (513)
453 PRK08533 flagellar accessory p 40.7 82 0.0018 33.9 7.4 49 266-317 23-71 (230)
454 PF01580 FtsK_SpoIIIE: FtsK/Sp 40.6 42 0.00092 35.1 5.1 41 266-306 37-77 (205)
455 TIGR02785 addA_Gpos recombinat 40.6 64 0.0014 43.6 7.8 60 249-314 2-61 (1232)
456 TIGR00365 monothiol glutaredox 39.8 1.1E+02 0.0024 28.0 7.1 54 637-690 10-69 (97)
457 PHA02558 uvsW UvsW helicase; P 39.4 18 0.00039 43.8 2.2 48 741-788 408-456 (501)
458 COG1200 RecG RecG-like helicas 39.2 1.6E+02 0.0036 36.5 10.1 63 650-715 327-390 (677)
459 PF00158 Sigma54_activat: Sigm 39.1 1.3E+02 0.0027 30.8 8.1 51 260-313 15-65 (168)
460 PRK11331 5-methylcytosine-spec 39.1 58 0.0013 38.7 6.2 34 259-292 186-219 (459)
461 COG3265 GntK Gluconate kinase 38.9 82 0.0018 31.6 6.2 33 301-334 70-102 (161)
462 PRK09302 circadian clock prote 38.8 80 0.0017 38.3 7.7 52 266-320 272-323 (509)
463 COG0541 Ffh Signal recognition 38.8 98 0.0021 36.4 7.8 57 270-329 103-159 (451)
464 PF03354 Terminase_1: Phage Te 38.6 45 0.00097 40.1 5.4 55 251-306 1-62 (477)
465 COG1224 TIP49 DNA helicase TIP 38.4 39 0.00083 38.6 4.3 27 265-291 63-89 (450)
466 PF01935 DUF87: Domain of unkn 38.4 49 0.0011 35.2 5.2 38 268-307 24-61 (229)
467 COG0467 RAD55 RecA-superfamily 38.2 85 0.0018 34.3 7.2 40 266-308 22-61 (260)
468 TIGR03880 KaiC_arch_3 KaiC dom 38.2 92 0.002 33.0 7.3 51 267-320 16-66 (224)
469 COG2842 Uncharacterized ATPase 38.2 1E+02 0.0023 34.3 7.6 37 387-426 165-203 (297)
470 TIGR01073 pcrA ATP-dependent D 38.0 52 0.0011 41.8 6.1 54 248-307 4-58 (726)
471 TIGR03877 thermo_KaiC_1 KaiC d 37.8 86 0.0019 33.7 7.0 51 266-319 20-70 (237)
472 TIGR03881 KaiC_arch_4 KaiC dom 37.7 88 0.0019 33.3 7.0 51 266-319 19-69 (229)
473 PRK13531 regulatory ATPase Rav 37.7 45 0.00098 39.9 5.1 39 253-291 25-63 (498)
474 PF13481 AAA_25: AAA domain; P 37.4 87 0.0019 32.1 6.8 56 266-321 31-93 (193)
475 PF02724 CDC45: CDC45-like pro 37.4 3E+02 0.0065 34.4 12.3 77 641-723 2-90 (622)
476 KOG0737|consensus 37.1 41 0.00088 38.5 4.3 49 266-320 126-174 (386)
477 PF02456 Adeno_IVa2: Adenoviru 37.1 66 0.0014 36.1 5.7 116 270-413 90-222 (369)
478 KOG0326|consensus 37.1 18 0.00039 40.2 1.5 36 741-776 385-420 (459)
479 PRK14873 primosome assembly pr 36.9 1.3E+02 0.0028 37.9 9.1 80 568-702 170-251 (665)
480 cd03028 GRX_PICOT_like Glutare 36.8 1.4E+02 0.003 26.9 7.1 47 637-683 6-58 (90)
481 cd03418 GRX_GRXb_1_3_like Glut 36.8 1.6E+02 0.0035 24.9 7.3 48 640-687 1-49 (75)
482 cd01129 PulE-GspE PulE/GspE Th 36.5 59 0.0013 35.8 5.5 41 249-291 64-104 (264)
483 PF06564 YhjQ: YhjQ protein; 36.1 91 0.002 33.9 6.7 37 271-310 6-44 (243)
484 PRK08903 DnaA regulatory inact 36.1 96 0.0021 32.9 7.0 29 265-293 40-68 (227)
485 PF05729 NACHT: NACHT domain 35.7 54 0.0012 32.3 4.7 29 270-298 3-31 (166)
486 KOG0385|consensus 35.4 19 0.00042 44.5 1.5 89 650-757 475-569 (971)
487 PRK09183 transposase/IS protei 34.9 39 0.00085 37.1 3.8 38 253-294 92-129 (259)
488 COG3598 RepA RecA-family ATPas 34.8 1.7E+02 0.0037 33.1 8.5 27 265-291 87-113 (402)
489 PLN03142 Probable chromatin-re 34.1 21 0.00045 46.8 1.7 29 741-772 553-581 (1033)
490 PRK02362 ski2-like helicase; P 34.0 40 0.00087 42.9 4.2 73 664-739 305-386 (737)
491 KOG1942|consensus 33.9 63 0.0014 35.8 4.9 31 261-291 58-88 (456)
492 COG1618 Predicted nucleotide k 33.8 1.4E+02 0.0029 30.6 6.9 120 269-418 7-132 (179)
493 PHA00350 putative assembly pro 33.7 1.2E+02 0.0025 35.6 7.5 25 271-295 5-30 (399)
494 PRK10646 ADP-binding protein; 33.7 89 0.0019 31.5 5.7 39 262-300 23-61 (153)
495 KOG0388|consensus 33.5 31 0.00066 42.3 2.7 90 649-757 1031-1124(1185)
496 KOG0738|consensus 33.4 52 0.0011 37.9 4.4 47 268-320 246-292 (491)
497 PF07726 AAA_3: ATPase family 33.1 24 0.00053 34.4 1.6 23 269-291 1-23 (131)
498 KOG2543|consensus 32.6 75 0.0016 36.7 5.5 140 246-427 7-160 (438)
499 COG1198 PriA Primosomal protei 32.6 1.4E+02 0.0031 37.7 8.4 111 495-701 195-306 (730)
500 cd00984 DnaB_C DnaB helicase C 32.5 68 0.0015 34.4 5.2 41 264-306 10-50 (242)
No 1
>KOG0384|consensus
Probab=100.00 E-value=3e-138 Score=1227.05 Aligned_cols=700 Identities=46% Similarity=0.759 Sum_probs=593.3
Q ss_pred CCCCCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhcccCC-CCcccccccccccCC
Q psy10448 134 GIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSKGR-GKTKTKELQEDEDGA 212 (1001)
Q Consensus 134 ~~~~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~~~~~-~k~~~~~~~~~~~~~ 212 (1001)
.+.|+|.+|||||++....+ .+|||||+||||++||||+.....+..+..++.|..+..++. |....
T Consensus 280 ~~~~dy~~VdRIia~~~~~d--~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~---------- 347 (1373)
T KOG0384|consen 280 DLNKDYVIVDRIIAEQTSKD--PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGC---------- 347 (1373)
T ss_pred hhhhhhhhhhhhhhcccCCC--ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCcc----------
Confidence 34699999999999987666 999999999999999999988766778888999987754332 11111
Q ss_pred CCCCCCCCCCCCCCCChhhhhhhhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 213 SGSKPRRYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
.+ .|..+-+.++++||+|+. |.+||+||++|+|||.+.|+++.+||||||||||||+|+|+||.+++
T Consensus 348 ------~~-----~~~rp~~~Kle~qp~~~~--g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~ 414 (1373)
T KOG0384|consen 348 ------KY-----RPQRPRFRKLEKQPEYKG--GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLF 414 (1373)
T ss_pred ------cc-----CccchhHHHhhcCccccc--cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHH
Confidence 11 122234678999999994 69999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEec
Q psy10448 293 KEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTS 372 (1001)
Q Consensus 293 ~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItT 372 (1001)
......||||||||+|++.+|++||..|+ ++++++|+|+..+|.++++++++.... ....+|+++|||
T Consensus 415 ~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~-----------~~~lkf~~lltT 482 (1373)
T KOG0384|consen 415 HSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSN-----------TKKLKFNALLTT 482 (1373)
T ss_pred HhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCC-----------ccccccceeehh
Confidence 99999999999999999999999999999 999999999999999999999976432 245689999999
Q ss_pred HHHHHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHH
Q psy10448 373 YELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQ 452 (1001)
Q Consensus 373 Ye~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~ 452 (1001)
|+++.++...|..++|.+++|||||+|||..|+++..|..++..+|||+||||+||++.|||+||+||.|+.|.+..+|.
T Consensus 483 ye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~ 562 (1373)
T KOG0384|consen 483 YEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFL 562 (1373)
T ss_pred hHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHH
Q psy10448 453 AEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNI 532 (1001)
Q Consensus 453 ~~f~~~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~ 532 (1001)
..| +...+.++..|+..|.|+||||+|+||.+.||++.|.++.|+||+.|+++|++|+++|+..|.++..+...+++|+
T Consensus 563 ~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNi 641 (1373)
T KOG0384|consen 563 EEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNI 641 (1373)
T ss_pred Hhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHH
Confidence 999 7788899999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHhcCCCCCchhhhcCCcCC----ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhccccccc
Q psy10448 533 MMDLKKCCNHPYLFPAAAEEAPVQG----GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLR 608 (1001)
Q Consensus 533 l~~LRk~c~HP~L~~~~~~~~~~~~----~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~ 608 (1001)
||.||||||||||+.++++...... ....++.++.+|||+++|+++|.+|++.||+||
T Consensus 642 mmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVL------------------ 703 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVL------------------ 703 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEE------------------
Confidence 9999999999999988776543222 245788999999999999999999999999998
Q ss_pred CCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCC
Q psy10448 609 DGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPG 688 (1001)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~ 688 (1001)
|||||++|||||++||..+||+|.||||++.++.|+++||+||+++
T Consensus 704 ----------------------------------IFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~ 749 (1373)
T KOG0384|consen 704 ----------------------------------IFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPD 749 (1373)
T ss_pred ----------------------------------EhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhh
Q psy10448 689 ASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSR 768 (1001)
Q Consensus 689 ~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~R 768 (1001)
++.|||||||||||+||||++||||||||+||||+ +|+||++|
T Consensus 750 SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQ-------------------------------------NDLQAqAR 792 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQ-------------------------------------NDLQAQAR 792 (1373)
T ss_pred CCceEEEEecccCcccccccccceEEEeCCCCCcc-------------------------------------hHHHHHHH
Confidence 99999999999999999999999999999999999 99999999
Q ss_pred hhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCC----CcCCCCCHHHHHHHHhcChhhhhccccCCc-
Q psy10448 769 AHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMG----GKQANFTKQELDDILRFGTEELFKEEEEQP- 843 (1001)
Q Consensus 769 ahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~----~~~~~~~~~el~~ll~~g~~~lf~~~~~~~- 843 (1001)
||||||++.|.||||||++||||.|++++++||.|+++|++.+.. .+...|+++||.+||+|||+++|+++++++
T Consensus 793 aHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s 872 (1373)
T KOG0384|consen 793 AHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEES 872 (1373)
T ss_pred HHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccc
Confidence 999999999999999999999999999999999999999986542 345689999999999999999999976542
Q ss_pred ----cchHHHHhhhh-------------------------cCC--------hhHHHHHhHhHhhhhhhhHH-----hhhC
Q psy10448 844 ----ENTEIIKQEAE-------------------------NQD--------PAYWVKLLRHHYEQHQEDVS-----RTLG 881 (1001)
Q Consensus 844 ----~~~~~~~~~~~-------------------------~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~ 881 (1001)
.+.+.|.+.++ ..| .--|..+.++.....-++.. ..+-
T Consensus 873 ~~~e~DIDeIL~rae~~~t~~~~~~~a~e~ls~fkvad~~~dd~~~~~~~~didwd~iipe~~r~~~~eeer~ke~ee~~ 952 (1373)
T KOG0384|consen 873 KFCEMDIDEILERAETRITEESDFMKASELLSQFKVADIKADDPADLEAERDIDWDRIIPEEERERIEEEERLKELEELY 952 (1373)
T ss_pred cccccCHHHHHhhcccccccccccchhHHHHhhccccccccCChhhhhhhccCChhhhCCHHHHhcchhhhhHHHHHhhc
Confidence 22222322111 111 12566666654332111111 0111
Q ss_pred CCcccc--ccC--CCCC--CcccccccCCCCccccccccccchhhhhcCCCCCcchhccCCceeeccchHHHHHHHhhhh
Q psy10448 882 KGKRVR--KQT--DDEN--DDDDFDEKNDGDLTGRRSAKKKEMSKQERDRPLPPLLARVGGNIEVLNQLEELLSDMKSDV 955 (1001)
Q Consensus 882 ~~~~~r--~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 955 (1001)
...|.| ++. +++. .+.+.+++..+..++++.+-... ..-++.++.|.+.++|.+++
T Consensus 953 ~~~rer~~k~~~~~~~~~~~~~~~~e~~~~~~~~~r~r~~~~------------------~g~~~~~~~e~eir~~~ra~ 1014 (1373)
T KOG0384|consen 953 SEPRERERKKNRLNDSHGRAESRSVEKSLGKKGKGRWREILK------------------RGEEKGGFTEKEIRRFYRAY 1014 (1373)
T ss_pred cchhhhhhhccccCcccccccccccccccccccccccccccc------------------cchhhcCCCHHHHHHHHHHH
Confidence 111221 121 1111 11222222222211111110000 01136889999999999999
Q ss_pred ccccccccCCChhhhhcccchHH
Q psy10448 956 SRLPATLARIPPVAQRLHMSERS 978 (1001)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~ 978 (1001)
.+||+++.|+..+++++++++.+
T Consensus 1015 ~kfg~~~~r~d~~~~~a~l~~~s 1037 (1373)
T KOG0384|consen 1015 LKFGLPLERLDEIIKDAELVDKS 1037 (1373)
T ss_pred HHhccHHHHHHHHHhhceeeccC
Confidence 99999999999999999999877
No 2
>KOG0385|consensus
Probab=100.00 E-value=1.4e-113 Score=976.22 Aligned_cols=493 Identities=49% Similarity=0.830 Sum_probs=460.6
Q ss_pred cCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHH
Q psy10448 237 KQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 237 ~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E 316 (1001)
.+|.++ .+++|+|||++|++||+..|.++.|||||||||||||+|+|+++.++.......||+||+||+|++.||.+|
T Consensus 158 ~sP~~v--~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~E 235 (971)
T KOG0385|consen 158 DSPSYV--KGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNE 235 (971)
T ss_pred CCchhh--cCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHH
Confidence 378887 578999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCc
Q psy10448 317 FETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEA 396 (1001)
Q Consensus 317 ~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEA 396 (1001)
|.+|+|++++++|+|++..|..++...+ ....|+|+||||+++.++...|..++|.++|||||
T Consensus 236 f~rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEa 298 (971)
T KOG0385|consen 236 FKRFTPSLNVVVYHGDKEERAALRRDIM-----------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEA 298 (971)
T ss_pred HHHhCCCcceEEEeCCHHHHHHHHHHhh-----------------ccCCCceEeehHHHHHhhHHHHhcCCceEEEechh
Confidence 9999999999999999999988765533 22389999999999999999999999999999999
Q ss_pred cccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccc---cHHHHHHHHHhhcCC
Q psy10448 397 HRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADI---SKEEQVKRLHDLLGP 473 (1001)
Q Consensus 397 H~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~---~~~~~~~~L~~lL~~ 473 (1001)
|||||.+|++++.++.+.+.+||||||||+|||+.|||+||+||-|+.|++.+.|..+|... ...+.+.+||.+|+|
T Consensus 299 HRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~p 378 (971)
T KOG0385|consen 299 HRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRP 378 (971)
T ss_pred hhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999642 334578999999999
Q ss_pred eeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcC
Q psy10448 474 HMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEA 553 (1001)
Q Consensus 474 ~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~ 553 (1001)
|+|||+|.+|.+.|||+.+.+++|.||.+|+++|++++.+....++..+.+....++|++|+|||||||||||.+.+...
T Consensus 379 FlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~ 458 (971)
T KOG0385|consen 379 FLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGP 458 (971)
T ss_pred HHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999988777778899999999999999999999865444
Q ss_pred CcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 554 PVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 554 ~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
+.. ..+.++..|||+.+|+++|.+|++.||+|+
T Consensus 459 pyt----tdehLv~nSGKm~vLDkLL~~Lk~~GhRVL------------------------------------------- 491 (971)
T KOG0385|consen 459 PYT----TDEHLVTNSGKMLVLDKLLPKLKEQGHRVL------------------------------------------- 491 (971)
T ss_pred CCC----cchHHHhcCcceehHHHHHHHHHhCCCeEE-------------------------------------------
Confidence 433 347889999999999999999999999998
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
|||||++|||||++|+..+||.|+||||+|+.++|..+|+.||++++..||||+||||||+||||++||||
T Consensus 492 ---------IFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtV 562 (971)
T KOG0385|consen 492 ---------IFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTV 562 (971)
T ss_pred ---------EeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHH
Q psy10448 714 IIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERV 793 (1001)
Q Consensus 714 Ii~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I 793 (1001)
|+||+||||+ +|+||++|||||||+|+|.||||||.+||||+|
T Consensus 563 IlyDSDWNPQ-------------------------------------~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~I 605 (971)
T KOG0385|consen 563 ILYDSDWNPQ-------------------------------------VDLQAMDRAHRIGQKKPVVVYRLITENTVEEKI 605 (971)
T ss_pred EEecCCCCch-------------------------------------hhhHHHHHHHhhCCcCceEEEEEeccchHHHHH
Confidence 9999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCCCC--CcCCCCCHHHHHHHHhcChhhhhccccC
Q psy10448 794 TQVAKRKMMLTHLVVRPGMG--GKQANFTKQELDDILRFGTEELFKEEEE 841 (1001)
Q Consensus 794 ~~~~~~K~~l~~~vv~~~~~--~~~~~~~~~el~~ll~~g~~~lf~~~~~ 841 (1001)
+.++..|+.|.+.|++.|.. .......+.++-+|+++|+..+|...+.
T Consensus 606 veRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es 655 (971)
T KOG0385|consen 606 VERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKES 655 (971)
T ss_pred HHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhccc
Confidence 99999999999999988722 2233478999999999999999877654
No 3
>KOG0386|consensus
Probab=100.00 E-value=1.1e-94 Score=842.31 Aligned_cols=484 Identities=45% Similarity=0.749 Sum_probs=437.9
Q ss_pred hhhhhhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH
Q psy10448 231 LRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 231 ~~~~~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll 310 (1001)
....+.+||+.+ .|++|++||+.|+.||...++++-+||||||||||||+|+|+++.++++.....||+|||||++++
T Consensus 379 I~E~v~~Qps~l--~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL 456 (1157)
T KOG0386|consen 379 IKENVAKQPSSL--QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTL 456 (1157)
T ss_pred hhhccccCcchh--cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccccc
Confidence 345678899998 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeE
Q psy10448 311 INWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAV 390 (1001)
Q Consensus 311 ~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~ 390 (1001)
.||..||.+|+|++..+.|.|.+..|..+... -...+|+|++|||+.+.++...|..+.|..
T Consensus 457 ~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W~y 518 (1157)
T KOG0386|consen 457 VNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------QRHGKFNVLLTTYEYIIKDKALLSKISWKY 518 (1157)
T ss_pred CCchhhccccccceeeeeeeCCHHHHhhHHHH------------------HhcccceeeeeeHHHhcCCHHHHhccCCcc
Confidence 99999999999999999999999999877533 123689999999999999999999999999
Q ss_pred EEEcCccccCCcccHHHHHHh-cccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcccc----------
Q psy10448 391 LVVDEAHRLKSNQSKFFKFLS-GYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADIS---------- 459 (1001)
Q Consensus 391 VIiDEAH~lKN~~Sk~~~al~-~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~---------- 459 (1001)
+||||+|++||..+++...+. .+.+.+|+||||||+||++.|||+||+|+-|.+|++...|..||..+-
T Consensus 519 MIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLt 598 (1157)
T KOG0386|consen 519 MIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELT 598 (1157)
T ss_pred eeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccccc
Confidence 999999999999999999999 679999999999999999999999999999999999999999996432
Q ss_pred HHH---HHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCC-CCCCccchHHHHHHH
Q psy10448 460 KEE---QVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNP-KGGGQQVSLLNIMMD 535 (1001)
Q Consensus 460 ~~~---~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~-~~~~~~~~ll~~l~~ 535 (1001)
.++ .+.+||++|+||++||.|++|...||.+++.++.|.||..|+.+|+.+.....-.... .+.+...+++|.+|.
T Consensus 599 eEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imq 678 (1157)
T KOG0386|consen 599 EEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQ 678 (1157)
T ss_pred chHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHH
Confidence 222 3789999999999999999999999999999999999999999999987654433222 244556789999999
Q ss_pred HHHHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchh
Q psy10448 536 LKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYL 615 (1001)
Q Consensus 536 LRk~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~ 615 (1001)
|||||||||++........... ....+++.|||+.+|+++|++|++.||+|+
T Consensus 679 LRKiCNHP~lf~~ve~~~~~~~---~~~dL~R~sGKfELLDRiLPKLkatgHRVL------------------------- 730 (1157)
T KOG0386|consen 679 LRKLCNHPYLFANVENSYTLHY---DIKDLVRVSGKFELLDRILPKLKATGHRVL------------------------- 730 (1157)
T ss_pred HHHhcCCchhhhhhcccccccc---ChhHHHHhccHHHHHHhhhHHHHhcCcchh-------------------------
Confidence 9999999999966544332222 226889999999999999999999999999
Q ss_pred hcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEE
Q psy10448 616 VKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFL 695 (1001)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~L 695 (1001)
.|+||+++++++++||...+++|.|+||+++.++|...++.||.|++++|+||
T Consensus 731 ---------------------------lF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fl 783 (1157)
T KOG0386|consen 731 ---------------------------LFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFL 783 (1157)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCC
Q psy10448 696 LSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQ 775 (1001)
Q Consensus 696 lStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~ 775 (1001)
+||+|||+|+|||+||||||||++|||+ .|+||.+|||||||+
T Consensus 784 lstragglglNlQtadtviifdsdwnp~-------------------------------------~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 784 LSTRAGGLGLNLQTADTVIIFDSDWNPH-------------------------------------QDLQAQDRAHRIGQK 826 (1157)
T ss_pred eeecccccccchhhcceEEEecCCCCch-------------------------------------hHHHHHHHHHHhhch
Confidence 9999999999999999999999999999 999999999999999
Q ss_pred CeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHH
Q psy10448 776 NKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDIL 828 (1001)
Q Consensus 776 k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll 828 (1001)
+.|.|+|+++.++|||+|+..+..|+.++..|++.|.-.. .-|.+|-+.+|
T Consensus 827 ~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn--~st~~eR~~~L 877 (1157)
T KOG0386|consen 827 KEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDN--KSTAEEREMFL 877 (1157)
T ss_pred hheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccC--CCcHHHHHHHH
Confidence 9999999999999999999999999999999998765322 23444444433
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.6e-92 Score=871.93 Aligned_cols=492 Identities=46% Similarity=0.764 Sum_probs=445.8
Q ss_pred hhhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 234 KYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 234 ~~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
.+..+|.++. .+|+|||++||+||+..+.++.|||||||||||||+|+|+++.++.......+|+|||||++++.||
T Consensus 158 ~l~~qP~~i~---~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW 234 (1033)
T PLN03142 158 RLLVQPSCIK---GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNW 234 (1033)
T ss_pred eeccCChHhc---cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHH
Confidence 3456788773 6999999999999999999999999999999999999999999988777778899999999999999
Q ss_pred HHHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEE
Q psy10448 314 EREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVV 393 (1001)
Q Consensus 314 ~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIi 393 (1001)
.+||.+|+|.+.+++|+|+...+..+....+ ...+++|+||||+++.++...|..+.|++|||
T Consensus 235 ~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIv 297 (1033)
T PLN03142 235 MNEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------VAGKFDVCVTSFEMAIKEKTALKRFSWRYIII 297 (1033)
T ss_pred HHHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------cccCCCcceecHHHHHHHHHHhccCCCCEEEE
Confidence 9999999999999999999887766543322 12368999999999999999999999999999
Q ss_pred cCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccc---cHHHHHHHHHhh
Q psy10448 394 DEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADI---SKEEQVKRLHDL 470 (1001)
Q Consensus 394 DEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~---~~~~~~~~L~~l 470 (1001)
||||++||..|+++++++.+++.+||+|||||++|++.|||+||+||.|+.|++...|..+|... .....+..|+.+
T Consensus 298 DEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~ 377 (1033)
T PLN03142 298 DEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKV 377 (1033)
T ss_pred cCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999753 234568899999
Q ss_pred cCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhh
Q psy10448 471 LGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAA 550 (1001)
Q Consensus 471 L~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~ 550 (1001)
++|+|+||+|++|...|||+.+.+++|.||+.|+.+|+.++.+....++.. +....+++++|.||+||+||+|+....
T Consensus 378 L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g--~~~~~LlnilmqLRk~cnHP~L~~~~e 455 (1033)
T PLN03142 378 LRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG--GERKRLLNIAMQLRKCCNHPYLFQGAE 455 (1033)
T ss_pred hhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHhCCHHhhhccc
Confidence 999999999999999999999999999999999999999999887777543 344568999999999999999987654
Q ss_pred hcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 551 EEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 551 ~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
...+. .....++..|+|+.+|.++|..+...|++|+
T Consensus 456 p~~~~----~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVL---------------------------------------- 491 (1033)
T PLN03142 456 PGPPY----TTGEHLVENSGKMVLLDKLLPKLKERDSRVL---------------------------------------- 491 (1033)
T ss_pred ccCcc----cchhHHhhhhhHHHHHHHHHHHHHhcCCeEE----------------------------------------
Confidence 33222 2235678899999999999999999888777
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
|||||+.++++|+++|...|+.|++|||+++..+|+.+|++||++++..+|||+||+|||+||||+.|
T Consensus 492 ------------IFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~A 559 (1033)
T PLN03142 492 ------------IFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATA 559 (1033)
T ss_pred ------------eehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhC
Confidence 99999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHH
Q psy10448 711 DTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVE 790 (1001)
Q Consensus 711 d~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiE 790 (1001)
|+||+||++|||+ .+.||+||||||||+++|.||||++.||||
T Consensus 560 d~VIiyD~dWNP~-------------------------------------~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 560 DIVILYDSDWNPQ-------------------------------------VDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CEEEEeCCCCChH-------------------------------------HHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHhcChhhhhcccc
Q psy10448 791 ERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTEELFKEEE 840 (1001)
Q Consensus 791 E~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~~g~~~lf~~~~ 840 (1001)
|+|++++.+|+.|...|++.|.......++++||.+|+++|++.+|+..+
T Consensus 603 EkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~ 652 (1033)
T PLN03142 603 EKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD 652 (1033)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccC
Confidence 99999999999999999987654444678999999999999999997554
No 5
>KOG0391|consensus
Probab=100.00 E-value=2.7e-93 Score=827.56 Aligned_cols=476 Identities=43% Similarity=0.714 Sum_probs=416.3
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDF 324 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 324 (1001)
+.+.||.||..|++||...|.++.|||||||||||||||+|+++.+|..+....||.|||||.+++.||+.||++|||++
T Consensus 612 LrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPgl 691 (1958)
T KOG0391|consen 612 LRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGL 691 (1958)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
+++.|+|+...|+..|+. | ..-..|||+||||..+..+...|...+|.++|+||||++||..|
T Consensus 692 KILTYyGs~kErkeKRqg---W--------------~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfks 754 (1958)
T KOG0391|consen 692 KILTYYGSHKERKEKRQG---W--------------AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKS 754 (1958)
T ss_pred eEeeecCCHHHHHHHhhc---c--------------cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhH
Confidence 999999999988876643 1 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcccc----------HHHHHHHHHhhcCCe
Q psy10448 405 KFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADIS----------KEEQVKRLHDLLGPH 474 (1001)
Q Consensus 405 k~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~----------~~~~~~~L~~lL~~~ 474 (1001)
+.|++|..+++.+||||||||+||++.|||+|++||.|..|.+...|..||.++. ....+.+||++++||
T Consensus 755 qrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPf 834 (1958)
T KOG0391|consen 755 QRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPF 834 (1958)
T ss_pred HHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999998643 245688999999999
Q ss_pred eeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchh-----
Q psy10448 475 MLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAA----- 549 (1001)
Q Consensus 475 ~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~----- 549 (1001)
+|||+|.||.++||.|.|++|+|.||..|+.+|+.++.+....- ....++.++++|++|+||||||||.||...
T Consensus 835 iLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKe-tLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ss 913 (1958)
T KOG0391|consen 835 ILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKE-TLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSS 913 (1958)
T ss_pred HHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhh-HhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 99999999999999999999999999999999999987543211 123567889999999999999999886000
Q ss_pred --------------------------------------------------------------------------------
Q psy10448 550 -------------------------------------------------------------------------------- 549 (1001)
Q Consensus 550 -------------------------------------------------------------------------------- 549 (1001)
T Consensus 914 fV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~ 993 (1958)
T KOG0391|consen 914 FVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQT 993 (1958)
T ss_pred cccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCcccccccccc
Confidence
Q ss_pred ----------hh--------------------------------------------------------------------
Q psy10448 550 ----------AE-------------------------------------------------------------------- 551 (1001)
Q Consensus 550 ----------~~-------------------------------------------------------------------- 551 (1001)
.+
T Consensus 994 ~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~a 1073 (1958)
T KOG0391|consen 994 SAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRA 1073 (1958)
T ss_pred chhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccC
Confidence 00
Q ss_pred ------------------------------------------------------------------------cCCcCCCh
Q psy10448 552 ------------------------------------------------------------------------EAPVQGGQ 559 (1001)
Q Consensus 552 ------------------------------------------------------------------------~~~~~~~~ 559 (1001)
.+++-...
T Consensus 1074 p~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e 1153 (1958)
T KOG0391|consen 1074 PGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRE 1153 (1958)
T ss_pred CCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchh
Confidence 00000000
Q ss_pred h-------------------------------------------------------------------------------
Q psy10448 560 Y------------------------------------------------------------------------------- 560 (1001)
Q Consensus 560 ~------------------------------------------------------------------------------- 560 (1001)
+
T Consensus 1154 ~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~ 1233 (1958)
T KOG0391|consen 1154 LLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELA 1233 (1958)
T ss_pred hhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhc
Confidence 0
Q ss_pred -----------------hHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCc
Q psy10448 561 -----------------EIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPY 623 (1001)
Q Consensus 561 -----------------~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1001)
+...+--.|||+..|.-+|.+|+..||||+
T Consensus 1234 p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvL--------------------------------- 1280 (1958)
T KOG0391|consen 1234 PYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVL--------------------------------- 1280 (1958)
T ss_pred cccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEE---------------------------------
Confidence 000000134555556666666666666655
Q ss_pred CccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccc
Q psy10448 624 DKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGL 703 (1001)
Q Consensus 624 ~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~ 703 (1001)
||+||+.|||+|+.||..+||-|+|+||+++.++||.++++||.+ ...|||++||++||+
T Consensus 1281 -------------------IfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD-~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1281 -------------------IFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNAD-RRIFCFILSTRSGGV 1340 (1958)
T ss_pred -------------------ehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCC-CceEEEEEeccCCcc
Confidence 999999999999999999999999999999999999999999995 567999999999999
Q ss_pred ccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEE
Q psy10448 704 GINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRF 783 (1001)
Q Consensus 704 GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrl 783 (1001)
||||+.||||||||+||||. .|.||++|||||||++.|+||||
T Consensus 1341 GiNLtgADTVvFYDsDwNPt-------------------------------------MDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPT-------------------------------------MDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred ccccccCceEEEecCCCCch-------------------------------------hhhHHHHHHHhhcCccceEEEEe
Confidence 99999999999999999999 99999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHh
Q psy10448 784 VTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILR 829 (1001)
Q Consensus 784 vt~~TiEE~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~ 829 (1001)
|+.+||||+|+..+..|..|.+.++++| +.....|++..+.+||.
T Consensus 1384 ISe~TIEeniLkkanqKr~L~evaiqgg-dfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1384 ISERTIEENILKKANQKRMLDEVAIQGG-DFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred eccchHHHHHHhhhhHHHHHHHHhhccC-CccHHHHhhhhHHHHhc
Confidence 9999999999999999999999999865 34556788888888874
No 6
>KOG0389|consensus
Probab=100.00 E-value=1.2e-92 Score=808.61 Aligned_cols=471 Identities=41% Similarity=0.659 Sum_probs=408.9
Q ss_pred hhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHH
Q psy10448 235 YEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 314 (1001)
Q Consensus 235 ~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~ 314 (1001)
...||+.+. .+++|+|||+-|||||.-.+.++-+||||||||||||+|+|||+.+|.+.+. .||.|||||.|++.||.
T Consensus 387 ~~~qp~~l~-s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWl 464 (941)
T KOG0389|consen 387 ITEQPKLLS-SGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWL 464 (941)
T ss_pred cccCccccC-CCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHH
Confidence 345788775 6899999999999999999999999999999999999999999999988876 89999999999999999
Q ss_pred HHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHh---hHhhhcCCceeEE
Q psy10448 315 REFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITN---DVALLGSIEWAVL 391 (1001)
Q Consensus 315 ~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~---d~~~L~~~~w~~V 391 (1001)
+||.+|||.+.|..|+|+...|..+|...- .....|+|++|||..+.. +..+|...+|++|
T Consensus 465 rEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~v 528 (941)
T KOG0389|consen 465 REFAKWCPSLKVEPYYGSQDERRELRERIK----------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYV 528 (941)
T ss_pred HHHHHhCCceEEEeccCcHHHHHHHHHHHh----------------ccCCCccEEEEEeecccCChHHHHHHHhccccEE
Confidence 999999999999999999999998875521 334489999999999975 5678999999999
Q ss_pred EEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCCh-hHHHHHHcccc-----------
Q psy10448 392 VVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDL-TSFQAEFADIS----------- 459 (1001)
Q Consensus 392 IiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~-~~F~~~f~~~~----------- 459 (1001)
|.||||.|||..|.+|+.|..+++.+||||||||+|||+.||++||.|+.|..|.+. .++..-|....
T Consensus 529 iyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l 608 (941)
T KOG0389|consen 529 IYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALL 608 (941)
T ss_pred EecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999764 45555554322
Q ss_pred HHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHH
Q psy10448 460 KEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKC 539 (1001)
Q Consensus 460 ~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~ 539 (1001)
..+++.+.+.++.||+|||.|.+|+++||||..++.+|+|+..|+.+|..+++.....++.........-.+++|+|||+
T Consensus 609 ~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~ 688 (941)
T KOG0389|consen 609 SQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKA 688 (941)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHH
Confidence 24578999999999999999999999999999999999999999999999987764333322222111116799999999
Q ss_pred hcCCCCCchhhhc-------------CCc--CCChh-----------h----------------HHHHHHhhchHHHHHH
Q psy10448 540 CNHPYLFPAAAEE-------------APV--QGGQY-----------E----------------IQALTRAAGKLVLLSK 577 (1001)
Q Consensus 540 c~HP~L~~~~~~~-------------~~~--~~~~~-----------~----------------~~~l~~~S~Kl~~L~k 577 (1001)
.|||.|+...... ... .+..+ + ...++-.|||...|.+
T Consensus 689 AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~ 768 (941)
T KOG0389|consen 689 ANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKE 768 (941)
T ss_pred hcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHH
Confidence 9999997321100 000 00000 0 1123457899999999
Q ss_pred HHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHH
Q psy10448 578 MLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDY 657 (1001)
Q Consensus 578 lL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~ 657 (1001)
+|++++..|+||+ |||||+.|||||+-+
T Consensus 769 LLp~~k~~G~RVL----------------------------------------------------iFSQFTqmLDILE~~ 796 (941)
T KOG0389|consen 769 LLPKIKKKGDRVL----------------------------------------------------IFSQFTQMLDILEVV 796 (941)
T ss_pred HHHHHhhcCCEEE----------------------------------------------------EeeHHHHHHHHHHHH
Confidence 9999999999988 999999999999999
Q ss_pred HhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccC
Q psy10448 658 LDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 658 L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq 737 (1001)
|...|+.|.|+||+|....||.+|+.||.+. ..||||+||+|||.||||+.||+|||+|.++||.
T Consensus 797 L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~-difVFLLSTKAGG~GINLt~An~VIihD~dFNP~-------------- 861 (941)
T KOG0389|consen 797 LDTLGYKYLRLDGSTQVNDRQDLIDEFNTDK-DIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY-------------- 861 (941)
T ss_pred HHhcCceEEeecCCccchHHHHHHHhhccCC-ceEEEEEeeccCcceecccccceEEEeecCCCCc--------------
Confidence 9999999999999999999999999999965 5689999999999999999999999999999999
Q ss_pred ccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCC
Q psy10448 738 QNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMG 813 (1001)
Q Consensus 738 ~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~ 813 (1001)
+|.||.+||||+||+|+|+|||||+++||||.|+++++.|+.|...+-+.+.+
T Consensus 862 -----------------------dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 862 -----------------------DDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred -----------------------ccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 99999999999999999999999999999999999999999999988766543
No 7
>KOG0387|consensus
Probab=100.00 E-value=1.6e-90 Score=792.76 Aligned_cols=479 Identities=36% Similarity=0.600 Sum_probs=404.6
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCe
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFY 325 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 325 (1001)
...|+|||.+||+||+..++++.||||+||||||||||+|+||..+...+...+|+|||||.+++.||.+||++|+|.++
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceE
Confidence 35799999999999999999999999999999999999999999999887777999999999999999999999999999
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCc-cccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPC-RIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~-~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
|.+|+|+......- .+.. ..++.. ..+.....-+|+||||+.+......+..+.|++||+||+|+|||++|
T Consensus 283 v~ilh~t~s~~r~~-~~~~-------~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 283 VFILHGTGSGARYD-ASHS-------SHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred EEEEecCCcccccc-cchh-------hhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCcc
Confidence 99999976532100 0000 000000 01122334579999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccH---------------HHHHHHHHh
Q psy10448 405 KFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISK---------------EEQVKRLHD 469 (1001)
Q Consensus 405 k~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~---------------~~~~~~L~~ 469 (1001)
+++.+|+.+++.+|++|||||+|||+.|||+|++|+.|+.+++...|.+.|..+.. ......|+.
T Consensus 355 ~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~ 434 (923)
T KOG0387|consen 355 KISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRD 434 (923)
T ss_pred HHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999965321 122456999
Q ss_pred hcCCeeeeeeHhHHhh-cCCCceEEEEEEcCCHHHHHHHHHHHHHhh--hhhCCCCCCccchHHHHHHHHHHHhcCCCCC
Q psy10448 470 LLGPHMLRRLKADVLK-NMPSKSEFIVRVELSPMQKKYYKYILTRNF--EALNPKGGGQQVSLLNIMMDLKKCCNHPYLF 546 (1001)
Q Consensus 470 lL~~~~lRR~K~dv~~-~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~--~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~ 546 (1001)
++.||+|||+|+||.. .||.|.+.+++|.||+.|+.+|+.++.... ..++. ....+..+.-||++||||-|+
T Consensus 435 lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng-----~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 435 LISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG-----KRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC-----CccceechHHHHhhcCCcccc
Confidence 9999999999999998 899999999999999999999999987532 22221 122345566799999999998
Q ss_pred chhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcc
Q psy10448 547 PAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKA 626 (1001)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1001)
....+.... ...+ ......|||+..+.+++..+..+|++++
T Consensus 510 ~~~~~~~~~-~~D~--~g~~k~sGKm~vl~~ll~~W~kqg~rvl------------------------------------ 550 (923)
T KOG0387|consen 510 DRRDEDEKQ-GPDY--EGDPKRSGKMKVLAKLLKDWKKQGDRVL------------------------------------ 550 (923)
T ss_pred cCccccccc-CCCc--CCChhhcchHHHHHHHHHHHhhCCCEEE------------------------------------
Confidence 774322111 1111 1456789999999999999999999888
Q ss_pred ccccccccCCCCceeEEEeccHHHHHHHHHHHh-hCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccc
Q psy10448 627 TWEDENEDIPGLKESIEFYNMTKMLDILEDYLD-GEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGI 705 (1001)
Q Consensus 627 ~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~-~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GI 705 (1001)
+|||...|||+|+.+|. ..||.|+|+||+++...|+.+|++||++.+ .+|||++|++||+|+
T Consensus 551 ----------------lFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s-~~VFLLTTrvGGLGl 613 (923)
T KOG0387|consen 551 ----------------LFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDES-IFVFLLTTRVGGLGL 613 (923)
T ss_pred ----------------EehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCc-eEEEEEEeccccccc
Confidence 99999999999999999 689999999999999999999999998654 579999999999997
Q ss_pred ccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEe
Q psy10448 706 NLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVT 785 (1001)
Q Consensus 706 NL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt 785 (1001)
||+.||.||||||+|||+ +|.||..|||||||+|.|.||||++
T Consensus 614 NLTgAnRVIIfDPdWNPS-------------------------------------tD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 614 NLTGANRVIIFDPDWNPS-------------------------------------TDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred ccccCceEEEECCCCCCc-------------------------------------cchHHHHHHHhhcCccceEEEEEec
Confidence 666666666666665555 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHhcCh
Q psy10448 786 RNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGT 832 (1001)
Q Consensus 786 ~~TiEE~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~~g~ 832 (1001)
.+||||+||.+|-.|..|.+.++...+ ....|...+|.+||.++.
T Consensus 657 ~gTIEEkiY~rQI~Kq~Ltn~il~~p~--q~RfF~~~dl~dLFsl~~ 701 (923)
T KOG0387|consen 657 AGTIEEKIYHRQIFKQFLTNRILKNPE--QRRFFKGNDLHDLFSLKD 701 (923)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCHH--HhhhcccccHHHHhCCCC
Confidence 999999999999999999999996432 234678889999998765
No 8
>KOG0388|consensus
Probab=100.00 E-value=8.2e-91 Score=778.38 Aligned_cols=463 Identities=43% Similarity=0.725 Sum_probs=416.3
Q ss_pred hhhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 234 KYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 234 ~~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
....||..+ .++|+.||+.|++||..++.+|.+||||||||||||+|+|+++.+|.+.....||||||+|.|++.||
T Consensus 556 ~tV~qPkil---~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NW 632 (1185)
T KOG0388|consen 556 RTVPQPKIL---KCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNW 632 (1185)
T ss_pred eeccCchhh---hhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHH
Confidence 345788876 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEE
Q psy10448 314 EREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVV 393 (1001)
Q Consensus 314 ~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIi 393 (1001)
..||.+|+|.++++.|.|+...|.+++.. |.. ..+......|||+||||+++..|...|.+++|.++|+
T Consensus 633 aqEisrFlP~~k~lpywGs~~eRkiLrKf---w~r--------KnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMIL 701 (1185)
T KOG0388|consen 633 AQEISRFLPSFKVLPYWGSPSERKILRKF---WNR--------KNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMIL 701 (1185)
T ss_pred HHHHHHhCccceeecCcCChhhhHHHHHh---cch--------hhhhccCCCceEEEEeeeeeechHHHHHhhhhhheeh
Confidence 99999999999999999999999998864 211 1223456789999999999999999999999999999
Q ss_pred cCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccc----------cHHHH
Q psy10448 394 DEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADI----------SKEEQ 463 (1001)
Q Consensus 394 DEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~----------~~~~~ 463 (1001)
|||+-||+..|.+++.|.++++..||||||||+||+..|||+||+|+.|..|.+..+|.+||..- .++++
T Consensus 702 DEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqq 781 (1185)
T KOG0388|consen 702 DEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQ 781 (1185)
T ss_pred hHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999642 34678
Q ss_pred HHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCC
Q psy10448 464 VKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHP 543 (1001)
Q Consensus 464 ~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP 543 (1001)
+.+||.+|+||||||.|++|...|..+++..|.|.||..|+.+|+.|-.+.. .....+++|+||++||||
T Consensus 782 L~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------~~E~~~~vmQlrKVCNHP 851 (1185)
T KOG0388|consen 782 LQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------SMEMENLVMQLRKVCNHP 851 (1185)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHhcCCh
Confidence 9999999999999999999999999999999999999999999998865442 223457999999999999
Q ss_pred CCCchhhh------------------------------------------------------------------------
Q psy10448 544 YLFPAAAE------------------------------------------------------------------------ 551 (1001)
Q Consensus 544 ~L~~~~~~------------------------------------------------------------------------ 551 (1001)
-||.....
T Consensus 852 dLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e 931 (1185)
T KOG0388|consen 852 DLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLE 931 (1185)
T ss_pred HHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceee
Confidence 87500000
Q ss_pred ----------------------------------------------------------------cCCcCC----------
Q psy10448 552 ----------------------------------------------------------------EAPVQG---------- 557 (1001)
Q Consensus 552 ----------------------------------------------------------------~~~~~~---------- 557 (1001)
++..+.
T Consensus 932 ~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pL 1011 (1185)
T KOG0388|consen 932 FKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPL 1011 (1185)
T ss_pred eccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCccc
Confidence 000000
Q ss_pred ----ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 558 ----GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 558 ----~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
....++.++..|||+..|+.+|.++++.||+|+
T Consensus 1012 n~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL------------------------------------------- 1048 (1185)
T KOG0388|consen 1012 NTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVL------------------------------------------- 1048 (1185)
T ss_pred ccceecCcHHhhhccccceeeHHHHHHHhhcCCceEE-------------------------------------------
Confidence 001134557788999999999999999999988
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
+|.||++|+|+|++||..+||.|.|+||+.+..+|..++..|+. ++.||||+||+|||+||||++||||
T Consensus 1049 ---------~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTV 1117 (1185)
T KOG0388|consen 1049 ---------MYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTV 1117 (1185)
T ss_pred ---------ehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEecccCcccccccccceE
Confidence 99999999999999999999999999999999999999999999 6789999999999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHH
Q psy10448 714 IIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERV 793 (1001)
Q Consensus 714 Ii~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I 793 (1001)
||||++|||. .|.||++||||+||++.|.||||++++||||+|
T Consensus 1118 iFYdSDWNPT-------------------------------------~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~ 1160 (1185)
T KOG0388|consen 1118 IFYDSDWNPT-------------------------------------ADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 1160 (1185)
T ss_pred EEecCCCCcc-------------------------------------hhhHHHHHHHhccCccceeeeeecccccHHHHH
Confidence 9999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCC
Q psy10448 794 TQVAKRKMMLTHLVVRPG 811 (1001)
Q Consensus 794 ~~~~~~K~~l~~~vv~~~ 811 (1001)
+.++.+|..+...|+.++
T Consensus 1161 l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1161 LERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred HHHhhhHHHHHHHHHcCC
Confidence 999999999999998653
No 9
>KOG0392|consensus
Probab=100.00 E-value=8.7e-84 Score=759.02 Aligned_cols=488 Identities=33% Similarity=0.533 Sum_probs=406.7
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC------CCCCcEEEEeCcchHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG------HCKGPFLVSAPLSTIINWEREFE 318 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~------~~~~p~LIV~P~sll~qW~~E~~ 318 (1001)
...+||.||.+|||||.+...-+-+|||||+||||||+|+|+++..-.-.. ....|.|||||.+|..+|+.|+.
T Consensus 972 I~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 972 ISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVK 1051 (1549)
T ss_pred hhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHH
Confidence 457899999999999999998899999999999999999999987543221 12457999999999999999999
Q ss_pred HHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccc
Q psy10448 319 TWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 319 k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~ 398 (1001)
+|+|-++|+.|.|....|..+|. ...+.+|+||+|+.+++|...+..+.|.++|+||+|-
T Consensus 1052 kf~pfL~v~~yvg~p~~r~~lR~--------------------q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHV 1111 (1549)
T KOG0392|consen 1052 KFFPFLKVLQYVGPPAERRELRD--------------------QYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHV 1111 (1549)
T ss_pred HhcchhhhhhhcCChHHHHHHHh--------------------hccccceEEeeHHHHHHHHHHHHhcccceEEecCcce
Confidence 99999999999999999887763 3446789999999999999999999999999999999
Q ss_pred cCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcccc---------------HHHH
Q psy10448 399 LKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADIS---------------KEEQ 463 (1001)
Q Consensus 399 lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~---------------~~~~ 463 (1001)
+||..++++++++++.+.||++|||||+|||+.|||+|++||.|+.+|+...|.+.|..+. ..-.
T Consensus 1112 ikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lA 1191 (1549)
T KOG0392|consen 1112 IKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLA 1191 (1549)
T ss_pred ecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999997542 1124
Q ss_pred HHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhC---CC---CCC-ccchHHHHHHHH
Q psy10448 464 VKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALN---PK---GGG-QQVSLLNIMMDL 536 (1001)
Q Consensus 464 ~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~---~~---~~~-~~~~ll~~l~~L 536 (1001)
++.||+..=|||+||+|.||+++||||..+..+|+|++.|+++|+.+..+...... .. ..+ ....++..+..+
T Consensus 1192 leaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYl 1271 (1549)
T KOG0392|consen 1192 LEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYL 1271 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999887221111 00 111 245678999999
Q ss_pred HHHhcCCCCCchhhhc--CCc-CCChhhHHHH--HHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCc
Q psy10448 537 KKCCNHPYLFPAAAEE--APV-QGGQYEIQAL--TRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGS 611 (1001)
Q Consensus 537 Rk~c~HP~L~~~~~~~--~~~-~~~~~~~~~l--~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~ 611 (1001)
||.|+||.|+....-. ... ..-......+ +..|+|+.+|..+|..+--.....-
T Consensus 1272 rKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~--------------------- 1330 (1549)
T KOG0392|consen 1272 RKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDS--------------------- 1330 (1549)
T ss_pred HHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcc---------------------
Confidence 9999999998653100 000 0001111223 5789999999999876542211110
Q ss_pred cchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhC---CCeEEEEEccCCHHHHHHHHHHhcCCC
Q psy10448 612 TIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGE---GYKYERIDGNITGSMRQESIDRFNAPG 688 (1001)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~---gi~~~ridG~~s~~eRq~~Id~Fn~~~ 688 (1001)
..........+|++||||+..|+|++++-|-+. .+.|.|+||++++.+|++++.+||+++
T Consensus 1331 -----------------~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp 1393 (1549)
T KOG0392|consen 1331 -----------------EVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP 1393 (1549)
T ss_pred -----------------cccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC
Confidence 000001135679999999999999999988765 667999999999999999999999987
Q ss_pred CCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhh
Q psy10448 689 ASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSR 768 (1001)
Q Consensus 689 ~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~R 768 (1001)
+.. |+|++|.+||+|+||+.||||||++-||||+ .|.|||+|
T Consensus 1394 tID-vLlLTThVGGLGLNLTGADTVVFvEHDWNPM-------------------------------------rDLQAMDR 1435 (1549)
T KOG0392|consen 1394 TID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNPM-------------------------------------RDLQAMDR 1435 (1549)
T ss_pred cee-EEEEeeeccccccccCCCceEEEEecCCCch-------------------------------------hhHHHHHH
Confidence 655 9999999999999999999999999999998 99999999
Q ss_pred hhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHh
Q psy10448 769 AHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILR 829 (1001)
Q Consensus 769 ahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~ 829 (1001)
||||||+|.|.||||||+||+||+|+..|+.|+..++.||+..- .....|.-++|-++|.
T Consensus 1436 AHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN-asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1436 AHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN-ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred HHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc-ccccccCHHHHHHHhc
Confidence 99999999999999999999999999999999999999997532 2234566677776664
No 10
>KOG0383|consensus
Probab=100.00 E-value=3.3e-80 Score=724.67 Aligned_cols=542 Identities=56% Similarity=0.881 Sum_probs=491.4
Q ss_pred chhhhhhhhHHHHHHHhhCCCCCCCCCCCCCCchHHHHHHhhhcCCCChhHHHHhhhhcCCCCCceeeeEEEeecccCCC
Q psy10448 75 SFLEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRHNINDEELEKKYYRYGIKPEWLIANRVINSKTLRDG 154 (1001)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 154 (1001)
..++.++-.+.++|.+++ +++.||.++.+. .+++.++ ..+++++++||.|+++|+|..+.|||+++....+
T Consensus 153 ~~~q~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~k~-~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~ 223 (696)
T KOG0383|consen 153 LLLQNPLNTLPVELQRKH--DTDQKPEAEIGV------TRDKGKL-VPYADLEERFLLYGIKPEWMPIARIINRRSSQKG 223 (696)
T ss_pred HHhhhhcccchHhhhhhh--hcccCccccccc------cccCccc-cccccchhhhhheeccccccccchhhhhhccccc
Confidence 346678888999999999 999999998761 1222223 3366689999999999999999999999988899
Q ss_pred cEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhcccCCCCcccccccccccCCCCCCCCCCCCCCCCCChhhhhh
Q psy10448 155 STIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSKGRGKTKTKELQEDEDGASGSKPRRYTPPPEKPTTDLRKK 234 (1001)
Q Consensus 155 ~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1001)
.+.|+|||+.|+|++++|+.++.+++++..+++.|+.........+.++ ....+....
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~~~~k~~~----------------------~~~~~~~v~ 281 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKPTVSKDLK----------------------SNTVDDPVP 281 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCccccccccc----------------------ccccCCCCC
Confidence 9999999999999999999999899999999998875433211100000 001233456
Q ss_pred hhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHH
Q psy10448 235 YEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 314 (1001)
Q Consensus 235 ~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~ 314 (1001)
+..||.++...+..|++||.+|+||++..|..+..+|||||||+|||++++.|+..++......+|+||++|.+++.+|.
T Consensus 282 ~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe 361 (696)
T KOG0383|consen 282 YEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWE 361 (696)
T ss_pred cccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCC
Confidence 67899999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCC-ccc-cCCCccccEEEecHHHHHhhHhhhcCCceeEEE
Q psy10448 315 REFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKP-CRI-RSSTVKFHVLLTSYELITNDVALLGSIEWAVLV 392 (1001)
Q Consensus 315 ~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~-~~~-~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VI 392 (1001)
+|+..|+|++.++.|.|+...|..++++++++.+...+.+.. .+. .....+++|.+++|+++..+...+.++.|.++|
T Consensus 362 ~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~li 441 (696)
T KOG0383|consen 362 REFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLI 441 (696)
T ss_pred CchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeE
Confidence 999999999999999999999999999999999887665532 222 246678999999999999999999999999999
Q ss_pred EcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC
Q psy10448 393 VDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG 472 (1001)
Q Consensus 393 iDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~ 472 (1001)
+||+|+++|..|++++.+......++++|||||+|||++||+++|+||.|+.|++...|.+.|.++...++++.|+.++.
T Consensus 442 vde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~ 521 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLC 521 (696)
T ss_pred eechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhc
Q psy10448 473 PHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEE 552 (1001)
Q Consensus 473 ~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~ 552 (1001)
|+|+||.|.|+++++|+|++.++.+.|++.|+++|+.++++++..+.. ++.+.+++|++|+|||+|+|||++.. .+
T Consensus 522 p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--~~~~~s~~n~~mel~K~~~hpy~~~~--~e 597 (696)
T KOG0383|consen 522 PHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--GVHQYSLLNIVMELRKQCNHPYLSPL--EE 597 (696)
T ss_pred chhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--cchhHHHHHHHHHHHHhhcCcccCcc--cc
Confidence 999999999999999999999999999999999999999999999987 67788999999999999999999988 34
Q ss_pred CCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccccc
Q psy10448 553 APVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDEN 632 (1001)
Q Consensus 553 ~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1001)
.....+.+....++.+|+|+.+|.+|++++++.||||+
T Consensus 598 ~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl------------------------------------------ 635 (696)
T KOG0383|consen 598 PLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVL------------------------------------------ 635 (696)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH------------------------------------------
Confidence 44466778889999999999999999999999999999
Q ss_pred ccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccc
Q psy10448 633 EDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLG 704 (1001)
Q Consensus 633 ~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~G 704 (1001)
||+||+.++|+|++++...+ .|.|+||..+..+||++|++||++++..||||+||+|||+|
T Consensus 636 ----------~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 636 ----------IFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ----------HHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999 99999999999999999999999999999999999999998
No 11
>KOG0390|consensus
Probab=100.00 E-value=5.8e-76 Score=693.97 Aligned_cols=476 Identities=33% Similarity=0.526 Sum_probs=387.3
Q ss_pred CCCcccHHHHHHHHHHHHhhc------CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC-----CCcEEEEeCcchHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWG------QNIDTILADEMGLGKTIQTITFLYSLFKEGHC-----KGPFLVSAPLSTIINW 313 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~------~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~-----~~p~LIV~P~sll~qW 313 (1001)
....|||||.||++||+.+.. ..+|||+||+||+|||+|+|+||+++++..+. ++ .|||||.+|+.||
T Consensus 235 l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k-~lVV~P~sLv~nW 313 (776)
T KOG0390|consen 235 LKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINK-PLVVAPSSLVNNW 313 (776)
T ss_pred HhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccc-cEEEccHHHHHHH
Confidence 456899999999999987754 44689999999999999999999999999888 55 5999999999999
Q ss_pred HHHHHHHCC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEE
Q psy10448 314 EREFETWAP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVL 391 (1001)
Q Consensus 314 ~~E~~k~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~V 391 (1001)
++||.+|.. .+....++|.... ..+....+.. +.......-|++.+|+++..+...+....+++|
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~------------~~~~~~~~~vli~sye~~~~~~~~il~~~~glL 380 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILF------------LGYKQFTTPVLIISYETASDYCRKILLIRPGLL 380 (776)
T ss_pred HHHHHHhccccccceeeeecccch-hhhhhHHHHH------------hhhhheeEEEEeccHHHHHHHHHHHhcCCCCeE
Confidence 999999985 4666666666554 1111111100 002233456999999999999999999999999
Q ss_pred EEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcccc------------
Q psy10448 392 VVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADIS------------ 459 (1001)
Q Consensus 392 IiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~------------ 459 (1001)
|+||+|++||..|.++++|..+++++|++|||||+||++.|+|++|+|++|+.+++...|...|..+.
T Consensus 381 VcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~ 460 (776)
T KOG0390|consen 381 VCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEED 460 (776)
T ss_pred EECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred --HHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHH
Q psy10448 460 --KEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLK 537 (1001)
Q Consensus 460 --~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LR 537 (1001)
.++.+++|..+...|++||+-....+.||++.+++|.|.+++.|..+|+.++....... .....+..+..|+
T Consensus 461 ~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~------~~~~~l~~~~~L~ 534 (776)
T KOG0390|consen 461 REREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRT------LKGYALELITKLK 534 (776)
T ss_pred hhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhh------hhcchhhHHHHHH
Confidence 13458889999999999999988889999999999999999999999999987631110 0112577888999
Q ss_pred HHhcCCCCCchhhhcCC---cCC-------ChhhH-HHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhccccc
Q psy10448 538 KCCNHPYLFPAAAEEAP---VQG-------GQYEI-QALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKT 606 (1001)
Q Consensus 538 k~c~HP~L~~~~~~~~~---~~~-------~~~~~-~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~ 606 (1001)
++|+||+|+.-...... ... ..... ..-..-|+|+..|..++...++...
T Consensus 535 k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~------------------- 595 (776)
T KOG0390|consen 535 KLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLL------------------- 595 (776)
T ss_pred HHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcc-------------------
Confidence 99999999852111110 000 00001 1112358899999999866654332
Q ss_pred ccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcC
Q psy10448 607 LRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNA 686 (1001)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~ 686 (1001)
.++++.++++.++++++..+..+|+.++++||+|+..+|+.+|+.||+
T Consensus 596 --------------------------------~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~ 643 (776)
T KOG0390|consen 596 --------------------------------VKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFND 643 (776)
T ss_pred --------------------------------eEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccC
Confidence 456688999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHh
Q psy10448 687 PGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAF 766 (1001)
Q Consensus 687 ~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~ 766 (1001)
+.+..||||+|++|||+|| ||++|||||+|||+|||++|.|||
T Consensus 644 p~~~~~vfLlSsKAgg~Gi-------------------------------------nLiGAsRlil~D~dWNPa~d~QAm 686 (776)
T KOG0390|consen 644 PESPSFVFLLSSKAGGEGL-------------------------------------NLIGASRLILFDPDWNPAVDQQAM 686 (776)
T ss_pred CCCCceEEEEecccccCce-------------------------------------eecccceEEEeCCCCCchhHHHHH
Confidence 9999899999999999995 555666666666666666999999
Q ss_pred hhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHh
Q psy10448 767 SRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILR 829 (1001)
Q Consensus 767 ~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~ 829 (1001)
+||||.||+|+|+||||++.||+||+||+++..|..|...|++...+.. ..+..+++..++.
T Consensus 687 aR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~-~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 687 ARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVE-KHFFTEDLKTLFD 748 (776)
T ss_pred HHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccc-cccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999998765433 3344455655543
No 12
>KOG1002|consensus
Probab=100.00 E-value=4.2e-73 Score=616.93 Aligned_cols=517 Identities=26% Similarity=0.413 Sum_probs=385.6
Q ss_pred CCCcccHHHHHHHHHHHHhhc-CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHC-C
Q psy10448 245 TGMQLHAYQLEGINWLRYSWG-QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA-P 322 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~-~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~-p 322 (1001)
+-+.|.|||++|+.|+..... .-.|||||||||+|||+|+|+++.. .....|+|||||..-+.||.+||.+++ +
T Consensus 181 lii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~nEI~~~T~g 256 (791)
T KOG1002|consen 181 LIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKNEIERHTSG 256 (791)
T ss_pred ceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHHHHHHhccC
Confidence 357899999999999976665 6679999999999999999999876 344668999999999999999999998 5
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh-----------------HhhhcC
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND-----------------VALLGS 385 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d-----------------~~~L~~ 385 (1001)
.+++.+|+|.+..... .....||||+|||..+.+. ...|++
T Consensus 257 slkv~~YhG~~R~~ni----------------------kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHs 314 (791)
T KOG1002|consen 257 SLKVYIYHGAKRDKNI----------------------KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHS 314 (791)
T ss_pred ceEEEEEecccccCCH----------------------HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhh
Confidence 6899999997644322 2456799999999998653 246888
Q ss_pred CceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChh---------H--H---
Q psy10448 386 IEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLT---------S--F--- 451 (1001)
Q Consensus 386 ~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~---------~--F--- 451 (1001)
++|.+||+||||.+|+..|...+++..+.+.+||+|||||+||.+.|||+|+.||+..+|.-+- + |
T Consensus 315 i~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr 394 (791)
T KOG1002|consen 315 IKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDR 394 (791)
T ss_pred ceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeeccc
Confidence 9999999999999999999999999999999999999999999999999999999988774210 0 1
Q ss_pred ----------------HHHH-cc--------ccHHHHHHHHHhhcCCeeeeeeHhHHhh--cCCCceEEEEEEcCCHHHH
Q psy10448 452 ----------------QAEF-AD--------ISKEEQVKRLHDLLGPHMLRRLKADVLK--NMPSKSEFIVRVELSPMQK 504 (1001)
Q Consensus 452 ----------------~~~f-~~--------~~~~~~~~~L~~lL~~~~lRR~K~dv~~--~LP~k~e~~v~v~Ls~~Q~ 504 (1001)
...| .. -.........|.++..+|+||+|-.-.. .|||+...+..--++..+.
T Consensus 395 ~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~ 474 (791)
T KOG1002|consen 395 MHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEK 474 (791)
T ss_pred ccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHH
Confidence 0000 00 0122345578889999999999865443 4899998888889999999
Q ss_pred HHHHHHHHHhhhhhCCCC-----CCccchHHHHHHHHHHHhcCCCCCchhhhcCC-cCC--------ChhhHHHHHHhhc
Q psy10448 505 KYYKYILTRNFEALNPKG-----GGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAP-VQG--------GQYEIQALTRAAG 570 (1001)
Q Consensus 505 ~~Y~~il~~~~~~l~~~~-----~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~-~~~--------~~~~~~~l~~~S~ 570 (1001)
.+|+.++......++... -.+...++.++.++||...||+|+........ ..+ .....+..+..+.
T Consensus 475 D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~C 554 (791)
T KOG1002|consen 475 DLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSC 554 (791)
T ss_pred HHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhh
Confidence 999999876655554322 22456789999999999999999855321110 000 0111222233332
Q ss_pred hHHHHH----HHHHHHHHcCCccccchhhhHhhhhcccccc---------cCCc---cchhhcccCCCcCccccccc--c
Q psy10448 571 KLVLLS----KMLKKLKEDGHRYGIKPEWLIANRVINSKTL---------RDGS---TIYLVKWRDLPYDKATWEDE--N 632 (1001)
Q Consensus 571 Kl~~L~----klL~~l~~~g~rvli~~e~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~--~ 632 (1001)
.-.+.. +.+...-+... +-|+.+.....+-.++.. +..+ .+....|+.+.+..+..+.. .
T Consensus 555 hH~FCrlCi~eyv~~f~~~~n--vtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l 632 (791)
T KOG1002|consen 555 HHKFCRLCIKEYVESFMENNN--VTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFL 632 (791)
T ss_pred hHHHHHHHHHHHHHhhhcccC--CCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHH
Confidence 222222 22233222222 233333322222111111 1111 11122333333322221111 1
Q ss_pred ccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 633 EDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 633 ~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
......-|.||||||++|||+|+-.|...|+.++.+.|+|++..|...|+.|.++..+ .|||+|.+|||+.
T Consensus 633 ~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c-~vfLvSLkAGGVA-------- 703 (791)
T KOG1002|consen 633 RERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDC-RVFLVSLKAGGVA-------- 703 (791)
T ss_pred HHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCe-EEEEEEeccCceE--------
Confidence 1223445899999999999999999999999999999999999999999999986554 4999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHH
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEER 792 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~ 792 (1001)
|||+.|++||+|||||||+++.||++|+|||||.++|.|.||+.++|||++
T Consensus 704 -----------------------------LNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~k 754 (791)
T KOG1002|consen 704 -----------------------------LNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEK 754 (791)
T ss_pred -----------------------------eeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHH
Confidence 788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHH
Q psy10448 793 VTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDIL 828 (1001)
Q Consensus 793 I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll 828 (1001)
|++++++|..++++.++.+.... ..++.++++-||
T Consensus 755 IieLQeKKa~mihaTi~qde~Ai-~kLt~eDmqfLF 789 (791)
T KOG1002|consen 755 IIELQEKKANMIHATIGQDEEAI-SKLTEEDMQFLF 789 (791)
T ss_pred HHHHHHHHhhhhhhhcCCcHHHH-HhcCHHHHHHHh
Confidence 99999999999999997654322 367888887765
No 13
>KOG1015|consensus
Probab=100.00 E-value=1.9e-70 Score=628.58 Aligned_cols=487 Identities=29% Similarity=0.451 Sum_probs=380.0
Q ss_pred CCcccHHHHHHHHHHHHhh---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-CCCcEEEEeCcchHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSW---------GQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLSTIINWER 315 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~---------~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-~~~p~LIV~P~sll~qW~~ 315 (1001)
-..|.|||..||+||+.+. ..|.|||||+.||||||+|+|+|+.+++.... ....+|||||++++.||..
T Consensus 666 v~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~ 745 (1567)
T KOG1015|consen 666 VIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMN 745 (1567)
T ss_pred HhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHH
Confidence 3579999999999996543 45779999999999999999999998775432 3456999999999999999
Q ss_pred HHHHHCCCCeEE----EEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH-----------
Q psy10448 316 EFETWAPDFYVV----TYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV----------- 380 (1001)
Q Consensus 316 E~~k~~p~~~vv----~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~----------- 380 (1001)
||.+|.+++... +|.-..-.+..-|.+ -...| ...-.|+|+.|++++...
T Consensus 746 EFekWm~~~e~~~~leV~eL~~vkr~e~R~~--~L~~W-------------~~~ggVmIiGYdmyRnLa~gr~vk~rk~k 810 (1567)
T KOG1015|consen 746 EFEKWMEGLEDDEKLEVSELATVKRPEERSY--MLQRW-------------QEDGGVMIIGYDMYRNLAQGRNVKSRKLK 810 (1567)
T ss_pred HHHHhcccccccccceeehhhhccChHHHHH--HHHHH-------------HhcCCEEEEehHHHHHHhcccchhhhHHH
Confidence 999999863221 221111111000000 01111 122259999999998632
Q ss_pred ----hhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHc
Q psy10448 381 ----ALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFA 456 (1001)
Q Consensus 381 ----~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~ 456 (1001)
..+..-..++||+||||.|||..|.+++++..+++.+|++|||||+|||+.|+|++++|+.|+.+++..+|.+.|.
T Consensus 811 e~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFv 890 (1567)
T KOG1015|consen 811 EIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFV 890 (1567)
T ss_pred HHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhc
Confidence 1233446899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccHH---------------HHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCC-
Q psy10448 457 DISKE---------------EQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNP- 520 (1001)
Q Consensus 457 ~~~~~---------------~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~- 520 (1001)
++... .....|+++|..++-|+...-+-+.|||+++++|.|.||+.|..+|.++++.....-+.
T Consensus 891 NpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~ 970 (1567)
T KOG1015|consen 891 NPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDS 970 (1567)
T ss_pred CccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCcc
Confidence 76542 23456899999999999999999999999999999999999999999999833222221
Q ss_pred -CCCCccchHHHHHHHHHHHhcCCCCCchhhh-------------cCCc-------------------------------
Q psy10448 521 -KGGGQQVSLLNIMMDLKKCCNHPYLFPAAAE-------------EAPV------------------------------- 555 (1001)
Q Consensus 521 -~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~-------------~~~~------------------------------- 555 (1001)
++.+....++.-...|+++-+|||.+..... ....
T Consensus 971 eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Des 1050 (1567)
T KOG1015|consen 971 EGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDES 1050 (1567)
T ss_pred ccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccccccccc
Confidence 1223445688888999999999997510000 0000
Q ss_pred -----CCC---------------------------h-----------------------------hhHHHHHHhhchHHH
Q psy10448 556 -----QGG---------------------------Q-----------------------------YEIQALTRAAGKLVL 574 (1001)
Q Consensus 556 -----~~~---------------------------~-----------------------------~~~~~l~~~S~Kl~~ 574 (1001)
..+ . .........||||.+
T Consensus 1051 ss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiL 1130 (1567)
T KOG1015|consen 1051 SSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMIL 1130 (1567)
T ss_pred ccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceeh
Confidence 000 0 000112456778888
Q ss_pred HHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHH
Q psy10448 575 LSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDIL 654 (1001)
Q Consensus 575 L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL 654 (1001)
|..+|....+-|.++| ||||....||+|
T Consensus 1131 LleIL~mceeIGDKlL----------------------------------------------------VFSQSL~SLdLI 1158 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLL----------------------------------------------------VFSQSLISLDLI 1158 (1567)
T ss_pred HHHHHHHHHHhcceeE----------------------------------------------------EeecccchhHHH
Confidence 8888777777666555 999999999999
Q ss_pred HHHHhh----------------------CCCeEEEEEccCCHHHHHHHHHHhcCCCCC-cEEEEEeccccccccccccCC
Q psy10448 655 EDYLDG----------------------EGYKYERIDGNITGSMRQESIDRFNAPGAS-QFVFLLSTRSGGLGINLATAD 711 (1001)
Q Consensus 655 ~~~L~~----------------------~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~-~~v~LlStragg~GINL~~Ad 711 (1001)
++||.. .|..|.||||+++..+|+++.++||++.+- ..+|||||+||++||||-+||
T Consensus 1159 e~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAAN 1238 (1567)
T KOG1015|consen 1159 EDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAAN 1238 (1567)
T ss_pred HHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecc
Confidence 999963 367799999999999999999999997553 458999999999997777666
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHH
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEE 791 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE 791 (1001)
.|||||-.|||. .|.|+|-|+||+||+|||+||||++.||+|+
T Consensus 1239 RVIIfDasWNPS-------------------------------------yDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1239 RVIIFDASWNPS-------------------------------------YDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred eEEEEecccCCc-------------------------------------cchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 666666666666 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHhcChhhhhccc
Q psy10448 792 RVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTEELFKEE 839 (1001)
Q Consensus 792 ~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~~g~~~lf~~~ 839 (1001)
+||.++-.|..+.-.||+.. .-...++..||-+|+.|... +|+..
T Consensus 1282 KIYkRQVTKqsls~RVVDeq--Qv~Rhy~~neLteLy~fep~-~ddp~ 1326 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQ--QVERHYTMNELTELYTFEPD-LDDPN 1326 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHH--HHHHHhhHhhhHHHhhcCCc-cCCcc
Confidence 99999999999999999753 23457899999999998765 55443
No 14
>KOG4439|consensus
Probab=100.00 E-value=7.8e-70 Score=613.79 Aligned_cols=506 Identities=27% Similarity=0.422 Sum_probs=377.0
Q ss_pred CCCcccHHHHHHHHHHHHhhcC-CCCeEEEcCCCCCHHHHHHHHHHHHHHc-------CCCCCcEEEEeCcchHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQ-NIDTILADEMGLGKTIQTITFLYSLFKE-------GHCKGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~-~~g~ILADemGLGKTiqaIa~l~~l~~~-------~~~~~p~LIV~P~sll~qW~~E 316 (1001)
..+.|.|||..|+.||..+..+ +.||||||+||||||.+.|+++.+-... +....++|||||.|++.||..|
T Consensus 322 ~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~E 401 (901)
T KOG4439|consen 322 LKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAE 401 (901)
T ss_pred ceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHH
Confidence 4678999999999999877654 5689999999999999999999865432 2223369999999999999999
Q ss_pred HHHHC--CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHh----------hHhhhc
Q psy10448 317 FETWA--PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITN----------DVALLG 384 (1001)
Q Consensus 317 ~~k~~--p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~----------d~~~L~ 384 (1001)
+++-. ..+.|++|+|... |. +.. ....+||||||||..+.+ ....|.
T Consensus 402 v~~rl~~n~LsV~~~HG~n~-r~-i~~-------------------~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~ 460 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNK-RE-ISA-------------------KELRKYDVVITTYNLVANKPDDELEEGKNSSPLA 460 (901)
T ss_pred HHHHHhhcceEEEEecCCcc-cc-CCH-------------------HHHhhcceEEEeeeccccCCchhhhcccCccHHH
Confidence 98765 3578999999874 11 110 234589999999999987 235678
Q ss_pred CCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHH
Q psy10448 385 SIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQV 464 (1001)
Q Consensus 385 ~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~ 464 (1001)
.+.|.+||+||||.+||+.++.+.+++.+.+.+||+|||||+||++-|+|+|+.||+..+|++...|.+.....+. ...
T Consensus 461 ~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~-~g~ 539 (901)
T KOG4439|consen 461 RIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSK-GGA 539 (901)
T ss_pred HhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccc-cch
Confidence 8999999999999999999999999999999999999999999999999999999999999999999888765432 345
Q ss_pred HHHHhhcCCeeeeeeHhHHhh-----cCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCC----------CCC------
Q psy10448 465 KRLHDLLGPHMLRRLKADVLK-----NMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNP----------KGG------ 523 (1001)
Q Consensus 465 ~~L~~lL~~~~lRR~K~dv~~-----~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~----------~~~------ 523 (1001)
.+|.-+.++.||||+|..... .||++...++.++|+..+...|+-+++.....+.. .++
T Consensus 540 ~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~ 619 (901)
T KOG4439|consen 540 NRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNR 619 (901)
T ss_pred hhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccch
Confidence 677778899999999998766 69999999999999999999998776543322210 000
Q ss_pred -------------------------CccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHH
Q psy10448 524 -------------------------GQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKM 578 (1001)
Q Consensus 524 -------------------------~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~kl 578 (1001)
.....++..|++|||||+||.+.....+........ ...+..+ ..=...
T Consensus 620 ~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g-----~~~sde~-~~e~~~ 693 (901)
T KOG4439|consen 620 FIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNG-----GDDSDEE-QLEEDN 693 (901)
T ss_pred hccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcC-----cchhhhh-hhhhhH
Confidence 011236888999999999997765543321110000 0000000 000111
Q ss_pred HHHHHHcCCccccchh-----hhHhhhhcccccccCCccchhhcccCCCcCccccccccc-cCCCCceeEEEeccHHHHH
Q psy10448 579 LKKLKEDGHRYGIKPE-----WLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE-DIPGLKESIEFYNMTKMLD 652 (1001)
Q Consensus 579 L~~l~~~g~rvli~~e-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~KvIIFsq~~~~ld 652 (1001)
+..+............ .......+.. .+.+.+....+..... .....+|+||-|||+.+|+
T Consensus 694 l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~-------------~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLn 760 (901)
T KOG4439|consen 694 LAELEKNDETDCSDDNCEDLPTAFPDQAFEP-------------DRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLN 760 (901)
T ss_pred HHhhhhcccccccccccccccccchhhhccc-------------ccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHH
Confidence 1111111000000000 0000000100 0111111111111111 2455679999999999999
Q ss_pred HHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhh
Q psy10448 653 ILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRA 732 (1001)
Q Consensus 653 iL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi 732 (1001)
++...|...|+.|..++|.+...+|+.+++.||..+.+..|+|+|..|||+||||..|+|+|++|..|||+
T Consensus 761 iv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPa--------- 831 (901)
T KOG4439|consen 761 IVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPA--------- 831 (901)
T ss_pred HHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHH---------
Confidence 99999999999999999999999999999999998887779999999999996666666665555555555
Q ss_pred hhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCC
Q psy10448 733 HRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGM 812 (1001)
Q Consensus 733 ~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~ 812 (1001)
.|.||.+|+||+||+|.|+||||++.||||++|...+..|..++..|+.+..
T Consensus 832 ----------------------------LEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~ 883 (901)
T KOG4439|consen 832 ----------------------------LEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSA 883 (901)
T ss_pred ----------------------------HHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcc
Confidence 9999999999999999999999999999999999999999999999997433
Q ss_pred CCcCCCCCHHHHHHHH
Q psy10448 813 GGKQANFTKQELDDIL 828 (1001)
Q Consensus 813 ~~~~~~~~~~el~~ll 828 (1001)
.-....+|..+|..||
T Consensus 884 tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 884 TRKMNKLTLADLKKLF 899 (901)
T ss_pred ccccccccHHHHHHHh
Confidence 3356678999998886
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-64 Score=643.72 Aligned_cols=480 Identities=41% Similarity=0.660 Sum_probs=407.3
Q ss_pred CCCcccHHHHHHHHHHH-HhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC-CCcEEEEeCcchHHHHHHHHHHHCC
Q psy10448 245 TGMQLHAYQLEGINWLR-YSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSAPLSTIINWEREFETWAP 322 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~-~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~-~~p~LIV~P~sll~qW~~E~~k~~p 322 (1001)
....|+|||.+|++||. ..+....||||||+||||||+|+|+++.+++..... .+|+|||||.+++.||.+|+.+|.|
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~ 414 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCc
Confidence 45789999999999999 788899999999999999999999999986666555 5799999999999999999999999
Q ss_pred CCe-EEEEeCCchh----hhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHh---hHhhhcCCceeEEEEc
Q psy10448 323 DFY-VVTYVGDKDC----RIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITN---DVALLGSIEWAVLVVD 394 (1001)
Q Consensus 323 ~~~-vv~y~g~~~~----r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~---d~~~L~~~~w~~VIiD 394 (1001)
.+. +.+++|.... +..+..... .+ . ...+++++|||+.+.. +...+..+.|+.+|+|
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~------~-~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~D 479 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLK--------LH------L-VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLD 479 (866)
T ss_pred cccceeeeeCCcccccHHHHHHHHHhh--------hc------c-cceeeEEechHHHHHHhhhhHHHHhhceeeeeehh
Confidence 999 9999998753 333221100 00 0 2348999999999999 9999999999999999
Q ss_pred CccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhh-ccCCCCCC-ChhHHHHHHccccH-----------H
Q psy10448 395 EAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLN-FLTPEKFN-DLTSFQAEFADISK-----------E 461 (1001)
Q Consensus 395 EAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~-fL~p~~f~-~~~~F~~~f~~~~~-----------~ 461 (1001)
|||++||..|..+++++.+++.++++|||||++|++.|||++++ |+.|..++ +...|...|..+.. .
T Consensus 480 Ea~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 559 (866)
T COG0553 480 EAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARE 559 (866)
T ss_pred hHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHH
Confidence 99999999999999999999999999999999999999999999 99999999 56889998865421 2
Q ss_pred HHHHHHHhhcCCeeeeeeHhH--HhhcCCCceEEEEEEcCCHHHHHHHHHHHH---HhhhhhCCCCCC---------ccc
Q psy10448 462 EQVKRLHDLLGPHMLRRLKAD--VLKNMPSKSEFIVRVELSPMQKKYYKYILT---RNFEALNPKGGG---------QQV 527 (1001)
Q Consensus 462 ~~~~~L~~lL~~~~lRR~K~d--v~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~---~~~~~l~~~~~~---------~~~ 527 (1001)
..+..|+.+++|+++||+|.+ +...||++.+.++.|+++..|..+|...+. .+...+...... ...
T Consensus 560 ~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (866)
T COG0553 560 LGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSEL 639 (866)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhh
Confidence 344558899999999999999 888999999999999999999999999988 555444322111 256
Q ss_pred hHHHHHHHHHHHhcCCCCCchhh-hcCCc--------CCChhhHHHHHHhh-chHHHHHHHH-HHHHHcCC--ccccchh
Q psy10448 528 SLLNIMMDLKKCCNHPYLFPAAA-EEAPV--------QGGQYEIQALTRAA-GKLVLLSKML-KKLKEDGH--RYGIKPE 594 (1001)
Q Consensus 528 ~ll~~l~~LRk~c~HP~L~~~~~-~~~~~--------~~~~~~~~~l~~~S-~Kl~~L~klL-~~l~~~g~--rvli~~e 594 (1001)
.+++.++.+|++|+||.++.... ..... .........++..| +|+..+.+++ ..+...|+ +++
T Consensus 640 ~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvl---- 715 (866)
T COG0553 640 NILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVL---- 715 (866)
T ss_pred HHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEE----
Confidence 78999999999999999987652 11110 01112234566778 9999999999 78888887 666
Q ss_pred hhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCH
Q psy10448 595 WLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITG 674 (1001)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~ 674 (1001)
||+||+.++++|+.+|...++.|+++||+++.
T Consensus 716 ------------------------------------------------ifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~ 747 (866)
T COG0553 716 ------------------------------------------------IFSQFTPVLDLLEDYLKALGIKYVRLDGSTPA 747 (866)
T ss_pred ------------------------------------------------EEeCcHHHHHHHHHHHHhcCCcEEEEeCCCCh
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeec
Q psy10448 675 SMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYD 754 (1001)
Q Consensus 675 ~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~D 754 (1001)
..|+.+|++|+++ ...+||++|++|||.|+||+.|++||+||++|||+
T Consensus 748 ~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~------------------------------- 795 (866)
T COG0553 748 KRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPA------------------------------- 795 (866)
T ss_pred hhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChH-------------------------------
Confidence 9999999999997 44569999999999998887777777777776666
Q ss_pred CCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccC-CCCCcCCCCCHHHHHHHHhc
Q psy10448 755 SDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRP-GMGGKQANFTKQELDDILRF 830 (1001)
Q Consensus 755 p~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~-~~~~~~~~~~~~el~~ll~~ 830 (1001)
.+.||++|||||||+++|.||||++++|+||+|+.++..|+.+...+++. +. +....++.+++..++..
T Consensus 796 ------~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 865 (866)
T COG0553 796 ------VELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGE-KELSKLSIEDLLDLFSL 865 (866)
T ss_pred ------HHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcc-cchhhccHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999985 32 23456788888887753
No 16
>KOG1016|consensus
Probab=100.00 E-value=3.5e-59 Score=526.74 Aligned_cols=513 Identities=27% Similarity=0.434 Sum_probs=369.6
Q ss_pred CCcccHHHHHHHHHHHHh---------hcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYS---------WGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~---------~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E 316 (1001)
...+.|||+-||.||+.+ -..+.|||||+.||||||+|+|+|+.-+++....+ .+|+|+|..++.||..|
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AK-tVL~ivPiNTlQNWlsE 330 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAK-TVLVIVPINTLQNWLSE 330 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccc-eEEEEEehHHHHHHHHH
Confidence 457899999999998433 35678999999999999999999999888776554 59999999999999999
Q ss_pred HHHHCCCC-----------eEEEEeCCc---hhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH--
Q psy10448 317 FETWAPDF-----------YVVTYVGDK---DCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV-- 380 (1001)
Q Consensus 317 ~~k~~p~~-----------~vv~y~g~~---~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~-- 380 (1001)
|..|.|.. .|.+..... +.|..+ ..+| ...-.|+++.|++++-..
T Consensus 331 fnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakv------i~~W-------------v~~GGVlLvGYemfRLL~lk 391 (1387)
T KOG1016|consen 331 FNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKV------IEQW-------------VQTGGVLLVGYEMFRLLILK 391 (1387)
T ss_pred hhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHH------HHHH-------------hccCCEEEehHHHHHHHHHh
Confidence 99999851 222221110 111111 0111 122349999999886421
Q ss_pred ------------------------------------hhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecC
Q psy10448 381 ------------------------------------ALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGT 424 (1001)
Q Consensus 381 ------------------------------------~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGT 424 (1001)
..|-.-..++||+||+|+|||..+.++.+|..+++++|+.|||-
T Consensus 392 ~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGY 471 (1387)
T KOG1016|consen 392 TLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGY 471 (1387)
T ss_pred cccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEecc
Confidence 11222347899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHH---------------HHHHHHHhhcCCeeeeeeHhHHhhcCCC
Q psy10448 425 PLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKE---------------EQVKRLHDLLGPHMLRRLKADVLKNMPS 489 (1001)
Q Consensus 425 PlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~---------------~~~~~L~~lL~~~~lRR~K~dv~~~LP~ 489 (1001)
|+|||+-|+|++++|++|..+++..+|.+.|..+... ....-||.+|..|+.||+..-+...||.
T Consensus 472 PLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~ 551 (1387)
T KOG1016|consen 472 PLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPE 551 (1387)
T ss_pred ccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhccc
Confidence 9999999999999999999999999999999765432 2245699999999999999888888999
Q ss_pred ceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHh---cCCCCCchhhhcCCcC-CChhhHHHH
Q psy10448 490 KSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCC---NHPYLFPAAAEEAPVQ-GGQYEIQAL 565 (1001)
Q Consensus 490 k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c---~HP~L~~~~~~~~~~~-~~~~~~~~l 565 (1001)
+.|+++-|.+|..|+++|+.++......+... ....+|-|+.+.-|| |||-++....+..... ......+.+
T Consensus 552 k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~----~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~ 627 (1387)
T KOG1016|consen 552 KKEYVILVRKSQIQRQLYRNFMLDAKREIAAN----NDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEM 627 (1387)
T ss_pred ccceEEEEeHHHHHHHHHHHHHHHHHHhhccc----cccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHH
Confidence 99999999999999999999886554443222 122355566666666 8997653322211100 000000000
Q ss_pred H--------------HhhchHHHHHHHHHHHHH---------------cCCccccchhhhHhhh-hcccccccCCccchh
Q psy10448 566 T--------------RAAGKLVLLSKMLKKLKE---------------DGHRYGIKPEWLIANR-VINSKTLRDGSTIYL 615 (1001)
Q Consensus 566 ~--------------~~S~Kl~~L~klL~~l~~---------------~g~rvli~~e~~~~~~-~~~~~~~~~~~~~~~ 615 (1001)
. .+.....+...+-++... ++..++-..+|..... ....
T Consensus 628 ~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~----------- 696 (1387)
T KOG1016|consen 628 KFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQE----------- 696 (1387)
T ss_pred hhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhc-----------
Confidence 0 000011111111122221 1111111111110000 0000
Q ss_pred hcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhC------------------CCeEEEEEccCCHHHH
Q psy10448 616 VKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGE------------------GYKYERIDGNITGSMR 677 (1001)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~------------------gi~~~ridG~~s~~eR 677 (1001)
.-+...+.....+....+....++|+|||||....||.|+.+|..+ ...|.++||.+++.+|
T Consensus 697 gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~r 776 (1387)
T KOG1016|consen 697 GVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADR 776 (1387)
T ss_pred ccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchH
Confidence 0011222233344555566778899999999999999999999864 2448999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCC
Q psy10448 678 QESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDW 757 (1001)
Q Consensus 678 q~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~W 757 (1001)
.++|++||++.+..+.|||||++|..||||-.|+.| ++||..|
T Consensus 777 ekLinqfN~e~~lsWlfllstrag~lGinLIsanr~-------------------------------------~ifda~w 819 (1387)
T KOG1016|consen 777 EKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRC-------------------------------------IIFDACW 819 (1387)
T ss_pred HHHHHhccCCCCceeeeeehhccccccceeeccceE-------------------------------------EEEEeec
Confidence 999999999888888999999999999655555555 4555555
Q ss_pred CCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHhcCh
Q psy10448 758 NPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGT 832 (1001)
Q Consensus 758 NP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~~g~ 832 (1001)
||..+.||++|++|.||+|+++|||||+.+|+|.+||.++-.|..+.+.||+.- .-..++|.+||+.|+.+..
T Consensus 820 npchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~--np~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 820 NPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDA--NPDANISQKELENLLMYDE 892 (1387)
T ss_pred CccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhccc--CccccccHHHHHHHhhhhh
Confidence 555999999999999999999999999999999999999999999999999753 3456899999999997543
No 17
>KOG1000|consensus
Probab=100.00 E-value=2.4e-55 Score=479.85 Aligned_cols=414 Identities=24% Similarity=0.335 Sum_probs=322.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeE
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v 326 (1001)
-.|.|||++||+|.+ ..++.++||||||||||+|||+++.++..+ +|.|||||.++...|.+++.+|.|....
T Consensus 197 s~LlPFQreGv~faL---~RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFAL---ERGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HhhCchhhhhHHHHH---hcCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhcccccc
Confidence 369999999998764 577889999999999999999999888654 5899999999999999999999987544
Q ss_pred -EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcccH
Q psy10448 327 -VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSK 405 (1001)
Q Consensus 327 -v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk 405 (1001)
.+..+..+.-. .......|.|+||+.+......|..-.|.+||+||+|.||+..++
T Consensus 270 i~vv~~~~D~~~-----------------------~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktk 326 (689)
T KOG1000|consen 270 IFVVDKSSDPLP-----------------------DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTK 326 (689)
T ss_pred eEEEecccCCcc-----------------------ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchh
Confidence 22223222110 011223599999999999999999999999999999999999999
Q ss_pred HHHHHhcc--cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccc---------cHHHHHHHHHhhcC-C
Q psy10448 406 FFKFLSGY--SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADI---------SKEEQVKRLHDLLG-P 473 (1001)
Q Consensus 406 ~~~al~~l--~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~---------~~~~~~~~L~~lL~-~ 473 (1001)
..+++..+ .+.|.+||||||--..+.|||.++..+++..|.+..+|-..|++. ..-.+..+|+-+|. .
T Consensus 327 r~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~ 406 (689)
T KOG1000|consen 327 RTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKR 406 (689)
T ss_pred hhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHH
Confidence 99998876 678999999999999999999999999999999999999999863 23345677877765 4
Q ss_pred eeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcC
Q psy10448 474 HMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEA 553 (1001)
Q Consensus 474 ~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~ 553 (1001)
.|+||+|.+|+.+|||| ...|.+.....+-..-+.+.......-+ .+. |+-.+.| ++
T Consensus 407 lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~----------~~~-~e~~~~~----l~------- 463 (689)
T KOG1000|consen 407 LMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTK----------VNS-MERKHES----LL------- 463 (689)
T ss_pred HHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcch----------hhh-hhhhhHH----HH-------
Confidence 69999999999999999 4455555555555544444433222000 000 0000000 00
Q ss_pred CcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 554 PVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 554 ~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
..--...-.|+..+.+.+.. |..+
T Consensus 464 --------l~y~~tgiaK~~av~eyi~~-----~~~l------------------------------------------- 487 (689)
T KOG1000|consen 464 --------LFYSLTGIAKAAAVCEYILE-----NYFL------------------------------------------- 487 (689)
T ss_pred --------HHHHHhcccccHHHHHHHHh-----Cccc-------------------------------------------
Confidence 00000011122222222211 0000
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
...+..|++||+.+..+||-|+.++..+++.+.||||++++.+|+.+++.|+..+.. .|-++|..|+|.||+|++|+.|
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev-~VAvlsItA~gvGLt~tAa~~V 566 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEV-RVAVLSITAAGVGLTLTAASVV 566 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccce-EEEEEEEeecccceeeeccceE
Confidence 124567899999999999999999999999999999999999999999999986554 4899999999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHH
Q psy10448 714 IIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERV 793 (1001)
Q Consensus 714 Ii~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I 793 (1001)
||.+.+|||. .-+||.+|+||+||+..|.||+||+++|+|+.+
T Consensus 567 VFaEL~wnPg-------------------------------------vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~ 609 (689)
T KOG1000|consen 567 VFAELHWNPG-------------------------------------VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYM 609 (689)
T ss_pred EEEEecCCCc-------------------------------------eEEechhhhhhccccceeeEEEEEecCchHHHH
Confidence 9999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q psy10448 794 TQVAKRKMMLTHLV 807 (1001)
Q Consensus 794 ~~~~~~K~~l~~~v 807 (1001)
|....+|+.....+
T Consensus 610 Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 610 WPMLQQKLDVLGSV 623 (689)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876654
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.9e-53 Score=521.76 Aligned_cols=421 Identities=21% Similarity=0.262 Sum_probs=314.0
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCC
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPD 323 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~ 323 (1001)
+.+..|.|||+..+.++... ...++|||||||||||++|++++..++..+. .+|+|||||.+|+.||..|+.+|+ +
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~-~~rvLIVvP~sL~~QW~~El~~kF-~ 223 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-AERVLILVPETLQHQWLVEMLRRF-N 223 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-CCcEEEEcCHHHHHHHHHHHHHHh-C
Confidence 35678999999999776543 3567999999999999999999998877664 457999999999999999998776 4
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH---hhhcCCceeEEEEcCccccC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV---ALLGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~---~~L~~~~w~~VIiDEAH~lK 400 (1001)
+.+.++.+...... .. .+. .....++++|+||+.+.++. ..+....|++|||||||+++
T Consensus 224 l~~~i~~~~~~~~~-~~------------~~~-----~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 224 LRFSLFDEERYAEA-QH------------DAD-----NPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred CCeEEEcCcchhhh-cc------------ccc-----CccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 55555554331110 00 000 22335789999999998753 45667799999999999999
Q ss_pred Cc---ccHHHHHHhcc--cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcccc---------------H
Q psy10448 401 SN---QSKFFKFLSGY--SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADIS---------------K 460 (1001)
Q Consensus 401 N~---~Sk~~~al~~l--~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~---------------~ 460 (1001)
|. .|+.++.+..+ +++++++|||||+||+..|+|++|+||+|+.|+++..|........ .
T Consensus 286 ~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~ 365 (956)
T PRK04914 286 WSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLS 365 (956)
T ss_pred cCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCC
Confidence 53 56778888877 5789999999999999999999999999999999999986543200 0
Q ss_pred HHHHHHHHhh------------------------------------cCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHH
Q psy10448 461 EEQVKRLHDL------------------------------------LGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQK 504 (1001)
Q Consensus 461 ~~~~~~L~~l------------------------------------L~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~ 504 (1001)
......|..+ ...+|+|+++++|. .+|++..+.+.+++.+...
T Consensus 366 ~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~ 444 (956)
T PRK04914 366 DDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQ 444 (956)
T ss_pred HHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHH
Confidence 1111112111 23689999999975 6999999999999976544
Q ss_pred HHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHH
Q psy10448 505 KYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKE 584 (1001)
Q Consensus 505 ~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~ 584 (1001)
..+..... ..+++ +.+|-.+..... ........+.|+..|.++++...
T Consensus 445 ~~~~~~~~---------------------~~~~~-~l~pe~~~~~~~---------~~~~~~~~d~Ki~~L~~~L~~~~- 492 (956)
T PRK04914 445 TAIKVSLE---------------------ARARD-MLYPEQIYQEFE---------DNATWWNFDPRVEWLIDFLKSHR- 492 (956)
T ss_pred HHHHHhHH---------------------HHHHh-hcCHHHHHHHHh---------hhhhccccCHHHHHHHHHHHhcC-
Confidence 33321000 01111 112100000000 00001223457777776665421
Q ss_pred cCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHH-hhCCC
Q psy10448 585 DGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYL-DGEGY 663 (1001)
Q Consensus 585 ~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L-~~~gi 663 (1001)
.+|+||||++..+++.|.+.| ...|+
T Consensus 493 -----------------------------------------------------~~KvLVF~~~~~t~~~L~~~L~~~~Gi 519 (956)
T PRK04914 493 -----------------------------------------------------SEKVLVICAKAATALQLEQALREREGI 519 (956)
T ss_pred -----------------------------------------------------CCeEEEEeCcHHHHHHHHHHHhhccCe
Confidence 256779999999999999999 56799
Q ss_pred eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCcccccc
Q psy10448 664 KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYIN 743 (1001)
Q Consensus 664 ~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LN 743 (1001)
++..|+|+++..+|+++++.|++++... .+||||.+||+|+||+.|++||+||+||||.
T Consensus 520 ~~~~ihG~~s~~eR~~~~~~F~~~~~~~-~VLIsTdvgseGlNlq~a~~VInfDlP~nP~-------------------- 578 (956)
T PRK04914 520 RAAVFHEGMSIIERDRAAAYFADEEDGA-QVLLCSEIGSEGRNFQFASHLVLFDLPFNPD-------------------- 578 (956)
T ss_pred eEEEEECCCCHHHHHHHHHHHhcCCCCc-cEEEechhhccCCCcccccEEEEecCCCCHH--------------------
Confidence 9999999999999999999999854222 4789999999999999999999999999999
Q ss_pred ccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccC
Q psy10448 744 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRP 810 (1001)
Q Consensus 744 L~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~ 810 (1001)
...|++||+||+||++.|.||.+++++|++++|++....|+.+++.++..
T Consensus 579 -----------------~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 579 -----------------LLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred -----------------HHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 55566666777778889999999999999999999999999888877754
No 19
>KOG1001|consensus
Probab=100.00 E-value=7.3e-54 Score=510.86 Aligned_cols=476 Identities=27% Similarity=0.416 Sum_probs=354.8
Q ss_pred HHHHHHHHHHHHh-hcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC------CCCcEEEEeCcchHHHHHHHHHHHCC-
Q psy10448 251 AYQLEGINWLRYS-WGQNIDTILADEMGLGKTIQTITFLYSLFKEGH------CKGPFLVSAPLSTIINWEREFETWAP- 322 (1001)
Q Consensus 251 pyQ~egv~wL~~~-~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~------~~~p~LIV~P~sll~qW~~E~~k~~p- 322 (1001)
.+|..+-.|+... +..-.|||+||+||+|||+++|+++........ ..+.+|||||.+++.||..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5566555555322 334568999999999999999999876544433 44569999999999999999966653
Q ss_pred -CCeEEEEeC-CchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccC
Q psy10448 323 -DFYVVTYVG-DKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 323 -~~~vv~y~g-~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lK 400 (1001)
.+.+.+|+| .++. ....+++||||||.++.. ..+..+.|.+||+||||.++
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ik 267 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIK 267 (674)
T ss_pred cceEEEEeccccccc-------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccC
Confidence 577888888 2111 345578899999999986 56677999999999999999
Q ss_pred CcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccH----HHHHHHHHhhcCCeee
Q psy10448 401 SNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISK----EEQVKRLHDLLGPHML 476 (1001)
Q Consensus 401 N~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~----~~~~~~L~~lL~~~~l 476 (1001)
|.+++.++++..+.+.+||.|||||+||++.|+|+++.|+.-+++.....|...+..+.. .+....++.+|..+|+
T Consensus 268 n~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~l 347 (674)
T KOG1001|consen 268 NKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVML 347 (674)
T ss_pred CcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888876432 3557788999999999
Q ss_pred eeeHhHH-----hhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCC-----CCCccchHHHHHHHHHHHhcCCCCC
Q psy10448 477 RRLKADV-----LKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPK-----GGGQQVSLLNIMMDLKKCCNHPYLF 546 (1001)
Q Consensus 477 RR~K~dv-----~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~-----~~~~~~~ll~~l~~LRk~c~HP~L~ 546 (1001)
||+|..- +..+||+...++.+.++..++.+|+.+........... .......++..+.++|++|+||+++
T Consensus 348 rrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv 427 (674)
T KOG1001|consen 348 RRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLV 427 (674)
T ss_pred cccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhh
Confidence 9999732 34699999999999999999999999877655443221 1224456788889999999999998
Q ss_pred chhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchh--------------------------------
Q psy10448 547 PAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPE-------------------------------- 594 (1001)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e-------------------------------- 594 (1001)
............... ...+ ++..+... +-+.++.+
T Consensus 428 ~~~~~~~~~~~~~~~--~~~~----------~i~~l~~~-~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~ 494 (674)
T KOG1001|consen 428 MYEMDSLGDSGSAAA--LIIR----------LIVDLSVS-HWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPL 494 (674)
T ss_pred hhhhhccccccccch--HHHH----------HHHHHhhc-cccccccccccceeecccchHHHHHHHhccccccCCCCcH
Confidence 654332221111000 0000 22222211 11111111
Q ss_pred ---hhHhhhhcccccccCCccchhhcccCCCcCc---cccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEE
Q psy10448 595 ---WLIANRVINSKTLRDGSTIYLVKWRDLPYDK---ATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERI 668 (1001)
Q Consensus 595 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ri 668 (1001)
.+.................... .+.... ..+. ..+.... .|+|||||++.++++++..|...++.+.++
T Consensus 495 cr~~l~~~~l~s~~~~~~~~~~~~~---~s~ki~~~~~~l~-~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~ 569 (674)
T KOG1001|consen 495 CRNVLKEKKLLSANPLPSIINDLLP---ESSKIYAFLKILQ-AKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRY 569 (674)
T ss_pred HHHHHHHHHHhhcccccchhhhccc---hhhhhHHHHHHHh-hccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchh
Confidence 0000000000000000000000 000000 0000 1111122 399999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccc
Q psy10448 669 DGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATAD 748 (1001)
Q Consensus 669 dG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~ 748 (1001)
+|.++...|.+.+..|+.+... .|+++|.+|||.| |||++|+
T Consensus 570 ~g~~~~~~r~~s~~~~~~~~~~-~vll~Slkag~~g-------------------------------------lnlt~a~ 611 (674)
T KOG1001|consen 570 DGEMLMKIRTKSFTDFPCDPLV-TALLMSLKAGKVG-------------------------------------LNLTAAS 611 (674)
T ss_pred hhhhHHHHHHhhhcccccCccH-HHHHHHHHHhhhh-------------------------------------hchhhhh
Confidence 9999999999999999965544 4899999999999 7888899
Q ss_pred eeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhcc
Q psy10448 749 TVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVR 809 (1001)
Q Consensus 749 ~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~ 809 (1001)
+||++||||||+.+.||++||||+||+++|.|+||++++|+||+|+.++++|..+...+++
T Consensus 612 ~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 612 HVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999887764
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=4.1e-43 Score=391.19 Aligned_cols=275 Identities=40% Similarity=0.665 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCC--cEEEEeCcchHHHHHHHHHHH
Q psy10448 252 YQLEGINWLRYSW---------GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKG--PFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 252 yQ~egv~wL~~~~---------~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~--p~LIV~P~sll~qW~~E~~k~ 320 (1001)
||++||.||+..+ ...+|||||||||+|||+++++++..+.......+ ++|||||.+++.||..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78889999999999999999999998877665443 699999999999999999999
Q ss_pred C-C-CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHH-----hhHhhhcCCceeEEEE
Q psy10448 321 A-P-DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELIT-----NDVALLGSIEWAVLVV 393 (1001)
Q Consensus 321 ~-p-~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~-----~d~~~L~~~~w~~VIi 393 (1001)
+ | ..++++|.|....+.... .....++++||||+++. .....+..++|++||+
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~~--------------------~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIv 140 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLSK--------------------NQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIV 140 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTTS--------------------SSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEE
T ss_pred cccccccccccccccccccccc--------------------cccccceeeeccccccccccccccccccccccceeEEE
Confidence 9 4 678888888762222211 33457889999999999 6677888899999999
Q ss_pred cCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcc---ccHHHHHHHHHhh
Q psy10448 394 DEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFAD---ISKEEQVKRLHDL 470 (1001)
Q Consensus 394 DEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~---~~~~~~~~~L~~l 470 (1001)
||||++||..+..++++..+.+.++|+|||||++|++.|+|++++||.|+.+.+...|.+.|.. .........|..+
T Consensus 141 DEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~ 220 (299)
T PF00176_consen 141 DEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLREL 220 (299)
T ss_dssp TTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred ecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998843 3456778899999
Q ss_pred cCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCC---CCccchHHHHHHHHHHHhcCCCCC
Q psy10448 471 LGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKG---GGQQVSLLNIMMDLKKCCNHPYLF 546 (1001)
Q Consensus 471 L~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~---~~~~~~ll~~l~~LRk~c~HP~L~ 546 (1001)
++++++||+++++..++|+..+.++.|+||+.|+.+|+.+.......+.... ......++..+++||++|+||+|+
T Consensus 221 l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 221 LSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred cchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 9999999999999889999999999999999999999999988877766543 234457899999999999999874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-37 Score=371.88 Aligned_cols=347 Identities=19% Similarity=0.293 Sum_probs=249.4
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHC--C
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWA--P 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~--p 322 (1001)
..+|||||.++++++... ...++|||.++||+|||+++++++..+ .+++|||||.+ ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 478999999999877421 122579999999999999999988765 35799999966 5899999999997 3
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh----------HhhhcCCceeEEE
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND----------VALLGSIEWAVLV 392 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d----------~~~L~~~~w~~VI 392 (1001)
...+..|.|..... .....+|+||||+++.+. ...+....|.+||
T Consensus 326 ~~~I~~~tg~~k~~-------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII 380 (732)
T TIGR00603 326 DSQICRFTSDAKER-------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLIL 380 (732)
T ss_pred CceEEEEecCcccc-------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEE
Confidence 45566666643211 011356999999998643 2345567899999
Q ss_pred EcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC
Q psy10448 393 VDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG 472 (1001)
Q Consensus 393 iDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~ 472 (1001)
+||||++.+ ....+.+..+.+.+||+|||||++++- .+.. |..+++
T Consensus 381 ~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~------------------------------L~~LiG 426 (732)
T TIGR00603 381 LDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITD------------------------------LNFLIG 426 (732)
T ss_pred EEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhh------------------------------hhhhcC
Confidence 999999953 344456777899999999999998752 1222 233444
Q ss_pred CeeeeeeHhHHhh--cCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhh
Q psy10448 473 PHMLRRLKADVLK--NMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAA 550 (1001)
Q Consensus 473 ~~~lRR~K~dv~~--~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~ 550 (1001)
|.+.+-.-.+... .|.+.....|+|+|++.....|- ..... .+...
T Consensus 427 P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl---~~~~~-------------------~k~~l---------- 474 (732)
T TIGR00603 427 PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYL---RENSR-------------------KRMLL---------- 474 (732)
T ss_pred CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHH---Hhcch-------------------hhhHH----------
Confidence 5444444444442 47777888899999987644442 11100 00000
Q ss_pred hcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 551 EEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 551 ~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
......|+..+..++......++
T Consensus 475 --------------~~~np~K~~~~~~Li~~he~~g~------------------------------------------- 497 (732)
T TIGR00603 475 --------------YVMNPNKFRACQFLIRFHEQRGD------------------------------------------- 497 (732)
T ss_pred --------------hhhChHHHHHHHHHHHHHhhcCC-------------------------------------------
Confidence 00123577777777765444444
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
|+||||+++..++.+...| +. ..|+|+++..+|.+++++|+.++.. .+|++|++|++|||++.|
T Consensus 498 ---------kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i--~vLv~SkVgdeGIDlP~a 561 (732)
T TIGR00603 498 ---------KIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKV--NTIFLSKVGDTSIDLPEA 561 (732)
T ss_pred ---------eEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCc--cEEEEecccccccCCCCC
Confidence 4559999999988888877 33 4589999999999999999864332 367778999999999999
Q ss_pred CEEEEecCCC-CcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCH
Q psy10448 711 DTVIIYDSDW-NPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSV 789 (1001)
Q Consensus 711 d~VIi~D~~W-NP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~Ti 789 (1001)
++||++++++ |+.+++||+||++|.+..+. + -.-..++|.||+++|.
T Consensus 562 ~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~----------------------------~----~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 562 NVLIQISSHYGSRRQEAQRLGRILRAKKGSD----------------------------A----EEYNAFFYSLVSKDTQ 609 (732)
T ss_pred CEEEEeCCCCCCHHHHHHHhcccccCCCCCc----------------------------c----ccccceEEEEecCCch
Confidence 9999999986 99999999999998875432 0 0124899999999999
Q ss_pred HHHHHH
Q psy10448 790 EERVTQ 795 (1001)
Q Consensus 790 EE~I~~ 795 (1001)
|+..-.
T Consensus 610 E~~~s~ 615 (732)
T TIGR00603 610 EMYYST 615 (732)
T ss_pred HHHHHH
Confidence 987754
No 22
>KOG0298|consensus
Probab=100.00 E-value=1.1e-36 Score=365.03 Aligned_cols=259 Identities=24% Similarity=0.410 Sum_probs=201.2
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH------------Hc---CCCCCcEEEEeCcchHHHHHHHHHHHCCCC-eEEEE
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLF------------KE---GHCKGPFLVSAPLSTIINWEREFETWAPDF-YVVTY 329 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~------------~~---~~~~~p~LIV~P~sll~qW~~E~~k~~p~~-~vv~y 329 (1001)
.+..+++|||||+|||...++....-. .. -...|.+|||||.+++.||-.||.+++++. +|..|
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEE
Confidence 344579999999999998887655321 11 122467999999999999999999999877 99999
Q ss_pred eCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH----------------------hhhcCCc
Q psy10448 330 VGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV----------------------ALLGSIE 387 (1001)
Q Consensus 330 ~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~----------------------~~L~~~~ 387 (1001)
.|-...-.... .....+|||+|||++++.+. ..|..+.
T Consensus 453 ~Girk~~~~~~--------------------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~ 512 (1394)
T KOG0298|consen 453 FGIRKTFWLSP--------------------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVN 512 (1394)
T ss_pred echhhhcccCc--------------------hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHH
Confidence 98654321111 34568999999999999864 2455678
Q ss_pred eeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccH-HHHHHH
Q psy10448 388 WAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISK-EEQVKR 466 (1001)
Q Consensus 388 w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~-~~~~~~ 466 (1001)
|.+||+|||+.+....|..++.+..+.+.++|++||||+|+ +.+|+.||.||...+|.....|.+....... ......
T Consensus 513 wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~ra~~~~ 591 (1394)
T KOG0298|consen 513 WWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLRAKCEP 591 (1394)
T ss_pred HHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999 9999999999999999999998876543221 123456
Q ss_pred HHhhcCCeeeeeeHhHHhhc--CCCceEEEEEEcCCHHHHHHHHHHHH----Hhhh---hhC----CCCC-------Ccc
Q psy10448 467 LHDLLGPHMLRRLKADVLKN--MPSKSEFIVRVELSPMQKKYYKYILT----RNFE---ALN----PKGG-------GQQ 526 (1001)
Q Consensus 467 L~~lL~~~~lRR~K~dv~~~--LP~k~e~~v~v~Ls~~Q~~~Y~~il~----~~~~---~l~----~~~~-------~~~ 526 (1001)
+.+++...+-|+.|.+|... +||..+.+.+..+++.+-.+|+.... .... .+. .... ...
T Consensus 592 ~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~ 671 (1394)
T KOG0298|consen 592 LLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLL 671 (1394)
T ss_pred HHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhH
Confidence 78889999999999998764 79999999999999988888865422 1111 111 0001 012
Q ss_pred chHHHHHHHHHHHhcCCCC
Q psy10448 527 VSLLNIMMDLKKCCNHPYL 545 (1001)
Q Consensus 527 ~~ll~~l~~LRk~c~HP~L 545 (1001)
..+++.+.+||++|+||-.
T Consensus 672 a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 672 AIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 3578999999999999964
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.6e-33 Score=353.57 Aligned_cols=430 Identities=22% Similarity=0.230 Sum_probs=258.8
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 323 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 323 (1001)
...++|+||.+.+..+. . .++|++++||+|||++++.++..++. ...+++|||||. .++.||..++.+++..
T Consensus 12 ~~~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 12 NTIEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CcCCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 45789999999987664 2 28999999999999999988887764 234679999996 7889999999988632
Q ss_pred --CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH--hhhcCCceeEEEEcCcccc
Q psy10448 324 --FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV--ALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 324 --~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~--~~L~~~~w~~VIiDEAH~l 399 (1001)
..++.+.|......... .....+|+|+|++.+..+. ..+....|++|||||||++
T Consensus 85 ~~~~v~~~~g~~~~~~r~~---------------------~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~ 143 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAE---------------------LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRA 143 (773)
T ss_pred CCceEEEEeCCCCHHHHHH---------------------HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccc
Confidence 47777887654322110 1123579999999998765 2333456899999999999
Q ss_pred CCcccHHHHHHh---cccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHH----HHHHc-------cccHHHHHH
Q psy10448 400 KSNQSKFFKFLS---GYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSF----QAEFA-------DISKEEQVK 465 (1001)
Q Consensus 400 KN~~Sk~~~al~---~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F----~~~f~-------~~~~~~~~~ 465 (1001)
.+..+..+.+-. ..+..++++|||||.++ ...+..+++-|..........| ...+. ...-.....
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~ 222 (773)
T PRK13766 144 VGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELK 222 (773)
T ss_pred cccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHH
Confidence 876554332221 22456689999999876 4556666655543221111111 00000 011122233
Q ss_pred HHHhhcCCeeeeeeHhHHhhc-CCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcC--
Q psy10448 466 RLHDLLGPHMLRRLKADVLKN-MPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNH-- 542 (1001)
Q Consensus 466 ~L~~lL~~~~lRR~K~dv~~~-LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~H-- 542 (1001)
.++..+..++.++.+...... .++........++...++.+++.+..... .......+...++.++.+...
T Consensus 223 ~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~l~~~~~~l~ 296 (773)
T PRK13766 223 EIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS------EGYEAISILAEAMKLRHAVELLE 296 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433322111 11111111111112222222211110000 000000111111122211100
Q ss_pred --------CCCCchhhhcCCcCCChhh----------------HHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHh
Q psy10448 543 --------PYLFPAAAEEAPVQGGQYE----------------IQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIA 598 (1001)
Q Consensus 543 --------P~L~~~~~~~~~~~~~~~~----------------~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~ 598 (1001)
.|+-... ........... ........+|+..|.++|......
T Consensus 297 ~~~~~~~~~y~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~------------- 362 (773)
T PRK13766 297 TQGVEALRRYLERLR-EEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK------------- 362 (773)
T ss_pred HhCHHHHHHHHHHHH-hhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc-------------
Confidence 0000000 00000000000 001112234555555555443311
Q ss_pred hhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEcc-------
Q psy10448 599 NRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGN------- 671 (1001)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~------- 671 (1001)
....|+||||++..+++.|.++|...|+++.+++|.
T Consensus 363 -------------------------------------~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 363 -------------------------------------NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred -------------------------------------CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 234678899999999999999999999999999997
Q ss_pred -CCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCcccccccccccee
Q psy10448 672 -ITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTV 750 (1001)
Q Consensus 672 -~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~V 750 (1001)
++..+|+.++++|+.+.. .+|++|.++++|+|++.|++||+||++||+.+++||+||++|.|
T Consensus 406 ~~~~~~r~~~~~~F~~g~~---~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-------------- 468 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEF---NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-------------- 468 (773)
T ss_pred CCCHHHHHHHHHHHHcCCC---CEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC--------------
Confidence 888899999999998654 38999999999999999999999999999999999888877766
Q ss_pred EeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy10448 751 IIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMML 803 (1001)
Q Consensus 751 il~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l 803 (1001)
++.||.|++.+|+||.++....+|...
T Consensus 469 --------------------------~~~v~~l~~~~t~ee~~y~~~~~ke~~ 495 (773)
T PRK13766 469 --------------------------EGRVVVLIAKGTRDEAYYWSSRRKEKK 495 (773)
T ss_pred --------------------------CCEEEEEEeCCChHHHHHHHhhHHHHH
Confidence 367899999999999988766554443
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.1e-28 Score=274.96 Aligned_cols=446 Identities=20% Similarity=0.193 Sum_probs=275.7
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC-
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA- 321 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~- 321 (1001)
....+.|.||..-+.-.+ ..|++++.++|||||+.|+.++...+..... .+|+++| ..|+.|-...+.+.+
T Consensus 11 p~~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 11 PNTIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred cccccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhC
Confidence 356789999999876443 2389999999999999999999987776543 5999999 789999999999887
Q ss_pred -CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccc
Q psy10448 322 -PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 322 -p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~ 398 (1001)
|...++.+.|.-...... ....+..|+++|++++.+|.. .+..-++.+||+|||||
T Consensus 84 ip~~~i~~ltGev~p~~R~---------------------~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR 142 (542)
T COG1111 84 IPEDEIAALTGEVRPEERE---------------------ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR 142 (542)
T ss_pred CChhheeeecCCCChHHHH---------------------HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhh
Confidence 557788888864332211 112345699999999999863 45556789999999999
Q ss_pred cCCcccH--HHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee
Q psy10448 399 LKSNQSK--FFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM 475 (1001)
Q Consensus 399 lKN~~Sk--~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~ 475 (1001)
.-...+- ..+..... +..+.++|||||- ++.+.+...++-|.. .. +
T Consensus 143 AvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgI-----------------------------e~-v 191 (542)
T COG1111 143 AVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGI-----------------------------EK-V 191 (542)
T ss_pred ccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCc-----------------------------ce-E
Confidence 7655443 33333333 4447899999994 223333332222222 22 2
Q ss_pred eeeeH--hHHhhcCCCceEEEEEEcCCHHHHHHHH---HHHHHhhhhhCCCC---CC---ccchHHHHHHHHHHHhcCCC
Q psy10448 476 LRRLK--ADVLKNMPSKSEFIVRVELSPMQKKYYK---YILTRNFEALNPKG---GG---QQVSLLNIMMDLKKCCNHPY 544 (1001)
Q Consensus 476 lRR~K--~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~---~il~~~~~~l~~~~---~~---~~~~ll~~l~~LRk~c~HP~ 544 (1001)
.-|+- .||-..+-.+....+.|+|+++-.++-+ .++......+...+ .. ....++... ..+. ...+.
T Consensus 192 evrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~-~~~~-~~a~~ 269 (542)
T COG1111 192 EVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELR-QIRL-IMAKN 269 (542)
T ss_pred EEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHH-HHHH-HhccC
Confidence 23332 2456667778888999999987665443 33444333333211 11 112222222 1111 11111
Q ss_pred CCchhhhcCCcCCChhhHHHHHHhhchHHHHH------------HHHHHHHHcCCccccchhhhHhhhhcccccccCCcc
Q psy10448 545 LFPAAAEEAPVQGGQYEIQALTRAAGKLVLLS------------KMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGST 612 (1001)
Q Consensus 545 L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~------------klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~ 612 (1001)
- ....+..-......-|+.... ..|.++.+....-.... ...............
T Consensus 270 ~----------~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~----a~~l~~d~~~~~al~ 335 (542)
T COG1111 270 E----------DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA----AKSLLADPYFKRALR 335 (542)
T ss_pred c----------cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHH----HHHHhcChhhHHHHH
Confidence 0 000111111111111221111 11222222111100000 000000000000000
Q ss_pred c---hhhcccCCCcCccccccccccC--CCCceeEEEeccHHHHHHHHHHHhhCCCeEE-EEEc--------cCCHHHHH
Q psy10448 613 I---YLVKWRDLPYDKATWEDENEDI--PGLKESIEFYNMTKMLDILEDYLDGEGYKYE-RIDG--------NITGSMRQ 678 (1001)
Q Consensus 613 ~---~~~~~~~~~~~~~~~~~~~~~~--~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~-ridG--------~~s~~eRq 678 (1001)
. ........|+.........+.. .+..++|||++|..+++.|.++|...|.... ++-| +|++.+..
T Consensus 336 ~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~ 415 (542)
T COG1111 336 LLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQK 415 (542)
T ss_pred HHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHH
Confidence 0 0011112222222222222222 4557999999999999999999999988876 7766 48889999
Q ss_pred HHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCC
Q psy10448 679 ESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWN 758 (1001)
Q Consensus 679 ~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WN 758 (1001)
++|++|+.+.-+ +|+||.+|.+|||++++|.||+|||.-+|.+.+||.||.+|.-
T Consensus 416 eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r---------------------- 470 (542)
T COG1111 416 EIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKR---------------------- 470 (542)
T ss_pred HHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCC----------------------
Confidence 999999997655 8999999999999999999999999999999999999998853
Q ss_pred CcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHh
Q psy10448 759 PHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLV 807 (1001)
Q Consensus 759 P~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~v 807 (1001)
+-.||-|+++||-|+.-+..+.+|..-....
T Consensus 471 ------------------~Grv~vLvt~gtrdeayy~~s~rke~~m~e~ 501 (542)
T COG1111 471 ------------------KGRVVVLVTEGTRDEAYYYSSRRKEQKMIES 501 (542)
T ss_pred ------------------CCeEEEEEecCchHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999998888886544443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2e-28 Score=286.27 Aligned_cols=367 Identities=19% Similarity=0.244 Sum_probs=263.8
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD 323 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~ 323 (1001)
...+|+|||.+++.-+...+...+.|++...+|.|||+.++.++..+.. .+||||| ..++.||.+.+.+++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 4678999999999766655555888999999999999999999987732 3999999 56789999888888743
Q ss_pred C-eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh--HhhhcCCceeEEEEcCccccC
Q psy10448 324 F-YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND--VALLGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 324 ~-~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d--~~~L~~~~w~~VIiDEAH~lK 400 (1001)
. .+-.+.|.... ... ..|.|+||+++.+. ...+..-.|++||+||||++.
T Consensus 107 ~~~~g~~~~~~~~--------------------------~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~ 159 (442)
T COG1061 107 NDEIGIYGGGEKE--------------------------LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP 159 (442)
T ss_pred ccccceecCceec--------------------------cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC
Confidence 3 33333332210 001 46999999999986 344445579999999999986
Q ss_pred CcccHHHHHHhcccccc-eEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeee
Q psy10448 401 SNQSKFFKFLSGYSIQN-KLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRL 479 (1001)
Q Consensus 401 N~~Sk~~~al~~l~~~~-rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~ 479 (1001)
.... ...+..+...+ +|+|||||...+-. ....+...+++.+....
T Consensus 160 a~~~--~~~~~~~~~~~~~LGLTATp~R~D~~-------------------------------~~~~l~~~~g~~vy~~~ 206 (442)
T COG1061 160 APSY--RRILELLSAAYPRLGLTATPEREDGG-------------------------------RIGDLFDLIGPIVYEVS 206 (442)
T ss_pred cHHH--HHHHHhhhcccceeeeccCceeecCC-------------------------------chhHHHHhcCCeEeecC
Confidence 4332 23344445555 99999999644311 23344555666666666
Q ss_pred HhHHhh--cCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 480 KADVLK--NMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 480 K~dv~~--~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
..+.+. .|.|.....+.+.++..+...|..........+..... ....
T Consensus 207 ~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----------------------- 256 (442)
T COG1061 207 LKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-------LRAE----------------------- 256 (442)
T ss_pred HHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-------hhHH-----------------------
Confidence 666544 58899999999999999999998776555443322111 0000
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
............++..+..++.... .+
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------------------------------------- 283 (442)
T COG1061 257 -NEARRIAIASERKIAAVRGLLLKHA-RG--------------------------------------------------- 283 (442)
T ss_pred -HHHHHHhhccHHHHHHHHHHHHHhc-CC---------------------------------------------------
Confidence 0001111223345555555554433 33
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
.+++||+........+...+...|+ +..++|.++..+|.+++++|..+.. .+|++++++++|+|++.|+++|+..
T Consensus 284 -~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~---~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 284 -DKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGI---KVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred -CcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCC---CEEEEeeeccceecCCCCcEEEEeC
Confidence 3455999999999999999999988 8999999999999999999999663 5899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHH
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVA 797 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~ 797 (1001)
+.-++..++||+||+.|....+. .-.+..|-++...+.+..+....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKE----------------------------------DTLALDYSLVPDDLGEEDIARRR 404 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCC----------------------------------ceEEEEEEeecCcccccchhhhh
Confidence 99999999999999999422111 11377788888888888776544
Q ss_pred HH
Q psy10448 798 KR 799 (1001)
Q Consensus 798 ~~ 799 (1001)
..
T Consensus 405 ~~ 406 (442)
T COG1061 405 RL 406 (442)
T ss_pred hh
Confidence 43
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=2.1e-27 Score=282.89 Aligned_cols=326 Identities=14% Similarity=0.162 Sum_probs=214.6
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC--
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP-- 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p-- 322 (1001)
...|+|||.+++.-+. .+.++|+...||+|||++++.++..+.... .+++||+|| ..|+.||.++|.+|..
T Consensus 112 ~~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 4789999999996554 456789999999999999877665544433 336999999 5788999999999862
Q ss_pred CCeE-EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCC
Q psy10448 323 DFYV-VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 323 ~~~v-v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN 401 (1001)
...+ .++.|... ....+|+|+|++.+.+....+. -.+++||+||||++..
T Consensus 186 ~~~~~~i~~g~~~----------------------------~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~ 236 (501)
T PHA02558 186 REAMHKIYSGTAK----------------------------DTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTG 236 (501)
T ss_pred ccceeEEecCccc----------------------------CCCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccc
Confidence 2222 22222210 1235799999999876543221 3688999999999864
Q ss_pred cccHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeeeH
Q psy10448 402 NQSKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLK 480 (1001)
Q Consensus 402 ~~Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K 480 (1001)
. .....+..+ ++.++++|||||....... ..+.. +++++..+-..
T Consensus 237 ~--~~~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~-------------------------------~fG~i~~~v~~ 282 (501)
T PHA02558 237 K--SLTSIITKLDNCKFKFGLTGSLRDGKANI-LQYVG-------------------------------LFGDIFKPVTT 282 (501)
T ss_pred h--hHHHHHHhhhccceEEEEeccCCCccccH-HHHHH-------------------------------hhCCceEEecH
Confidence 3 344455566 5778999999995432111 11111 12222222122
Q ss_pred hHHhh--cCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCC
Q psy10448 481 ADVLK--NMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGG 558 (1001)
Q Consensus 481 ~dv~~--~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~ 558 (1001)
.+..+ .+.+.....+.+..++.....+. ... ...
T Consensus 283 ~~li~~g~l~~~~~~~v~~~~~~~~~~~~~--------------~~~---~~~--------------------------- 318 (501)
T PHA02558 283 SQLMEEGQVTDLKINSIFLRYPDEDRVKLK--------------GED---YQE--------------------------- 318 (501)
T ss_pred HHHHhCCCcCCceEEEEeccCCHHHhhhhc--------------ccc---hHH---------------------------
Confidence 22221 12233333444444432211000 000 000
Q ss_pred hhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCC
Q psy10448 559 QYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGL 638 (1001)
Q Consensus 559 ~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1001)
....+.....+..++.+++..+.+.+.+++
T Consensus 319 --~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~l------------------------------------------------ 348 (501)
T PHA02558 319 --EIKYITSHTKRNKWIANLALKLAKKGENTF------------------------------------------------ 348 (501)
T ss_pred --HHHHHhccHHHHHHHHHHHHHHHhcCCCEE------------------------------------------------
Confidence 001112223344555566655555555544
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+... +++.|++..|+|+|++.+|+||+++|
T Consensus 349 ----V~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~--vLvaT~~~l~eG~Dip~ld~vIl~~p 422 (501)
T PHA02558 349 ----VMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGI--IIVASYGVFSTGISIKNLHHVIFAHP 422 (501)
T ss_pred ----EEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCe--EEEEEcceeccccccccccEEEEecC
Confidence 888999999999999999999999999999999999999999875432 45555599999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCccc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+.+...++||+||++|.+..+.
T Consensus 423 ~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 423 SKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred CcchhhhhhhhhccccCCCCCc
Confidence 9999989999998888875543
No 27
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=3e-23 Score=249.14 Aligned_cols=307 Identities=19% Similarity=0.206 Sum_probs=201.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHH-HHHHHHcC---CCCCc-EEEEeC-cchHHHHHHHHHHHC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITF-LYSLFKEG---HCKGP-FLVSAP-LSTIINWEREFETWA 321 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~-l~~l~~~~---~~~~p-~LIV~P-~sll~qW~~E~~k~~ 321 (1001)
++.|+|.+++..+. .+++.|+..++|+|||++.+.- +..+.... ...+| +||||| ..|+.|+..++.++.
T Consensus 152 ~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 59999999987665 7889999999999999987543 33333221 11233 799999 567799999999987
Q ss_pred CC--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCcc
Q psy10448 322 PD--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAH 397 (1001)
Q Consensus 322 p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH 397 (1001)
.. +.+.+.+|.......... .....+|+|+|++.+...... +.-....+|||||||
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~--------------------l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd 287 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYA--------------------LRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD 287 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHH--------------------HHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH
Confidence 43 444444444332222111 112468999999988765421 222346799999999
Q ss_pred ccCCcc--cHHHHHHhcccc-cceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC--
Q psy10448 398 RLKSNQ--SKFFKFLSGYSI-QNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG-- 472 (1001)
Q Consensus 398 ~lKN~~--Sk~~~al~~l~~-~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~-- 472 (1001)
++-... ..+.+.+..+.. ...+++|||.- .++..+.. .++.
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~------------------------------~l~~~~ 333 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR------------------------------DLCKEE 333 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH------------------------------HHhccC
Confidence 986543 233444444533 45688999952 11111110 0110
Q ss_pred CeeeeeeHhHHhhcCCCceEE-EEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhh
Q psy10448 473 PHMLRRLKADVLKNMPSKSEF-IVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAE 551 (1001)
Q Consensus 473 ~~~lRR~K~dv~~~LP~k~e~-~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~ 551 (1001)
+..+..-..++ ........ ++.+
T Consensus 334 ~v~i~vg~~~l--~~~~~i~q~~~~~------------------------------------------------------ 357 (545)
T PTZ00110 334 PVHVNVGSLDL--TACHNIKQEVFVV------------------------------------------------------ 357 (545)
T ss_pred CEEEEECCCcc--ccCCCeeEEEEEE------------------------------------------------------
Confidence 11000000000 00000000 0000
Q ss_pred cCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccc
Q psy10448 552 EAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 631 (1001)
Q Consensus 552 ~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1001)
....|...|..++..+...+
T Consensus 358 ---------------~~~~k~~~L~~ll~~~~~~~--------------------------------------------- 377 (545)
T PTZ00110 358 ---------------EEHEKRGKLKMLLQRIMRDG--------------------------------------------- 377 (545)
T ss_pred ---------------echhHHHHHHHHHHHhcccC---------------------------------------------
Confidence 01123333444444333222
Q ss_pred cccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC
Q psy10448 632 NEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD 711 (1001)
Q Consensus 632 ~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad 711 (1001)
.++|||++....++.|...|...|+....++|.++..+|..+++.|+++... +|++|.++++|||++.++
T Consensus 378 -------~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~---ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 378 -------DKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP---IMIATDVASRGLDVKDVK 447 (545)
T ss_pred -------CeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc---EEEEcchhhcCCCcccCC
Confidence 3566999999999999999999999999999999999999999999986654 899999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCc
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
+||+||+|+++..|+||+||++|.|..
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~ 474 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAK 474 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCC
Confidence 999999999999999999999998854
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.92 E-value=5.3e-23 Score=243.67 Aligned_cols=304 Identities=19% Similarity=0.264 Sum_probs=206.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC---CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA---PD 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~---p~ 323 (1001)
++.|+|.+++..+. ++.+.|+..++|+|||...+..+...+........+||+|| ..|..||.+++..++ ++
T Consensus 26 ~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 58899999998776 77889999999999998866555554443322224899999 567799999998764 46
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN 401 (1001)
..+..++|.......... .....+|+|+|++.+...... +.-..+.+||+||||++-+
T Consensus 102 ~~v~~~~Gg~~~~~~~~~--------------------l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~ 161 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDS--------------------LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD 161 (460)
T ss_pred cEEEEEECCCChHHHHHH--------------------hcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhC
Confidence 777777776544332221 123568999999998765432 2223578999999999754
Q ss_pred cc--cHHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC-Ceeee
Q psy10448 402 NQ--SKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG-PHMLR 477 (1001)
Q Consensus 402 ~~--Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~-~~~lR 477 (1001)
.. ..+...+..+. ....+++|||+-. .+..+ .. .++. +..+.
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~l---~~------------------------------~~~~~~~~i~ 207 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPE-GIAAI---SQ------------------------------RFQRDPVEVK 207 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcH-HHHHH---HH------------------------------HhcCCCEEEE
Confidence 32 23344444443 3356999999731 11111 10 0011 11111
Q ss_pred eeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 478 RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 478 R~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
-... ...+......+.+. .
T Consensus 208 ~~~~---~~~~~i~~~~~~~~--~-------------------------------------------------------- 226 (460)
T PRK11776 208 VEST---HDLPAIEQRFYEVS--P-------------------------------------------------------- 226 (460)
T ss_pred ECcC---CCCCCeeEEEEEeC--c--------------------------------------------------------
Confidence 0000 00111111111110 0
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
..|+..+..++... .
T Consensus 227 -----------~~k~~~l~~ll~~~------------------------------------------------------~ 241 (460)
T PRK11776 227 -----------DERLPALQRLLLHH------------------------------------------------------Q 241 (460)
T ss_pred -----------HHHHHHHHHHHHhc------------------------------------------------------C
Confidence 01333333333211 1
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
..++||||+....++.+.+.|...|+.+..++|+++..+|+.+++.|.++... +|++|.++++|||++.+++||+||
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS---VLVATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEecccccccchhcCCeEEEec
Confidence 13456999999999999999999999999999999999999999999986654 899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCc
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~ 738 (1001)
.|.++..|+||+||++|.|+.
T Consensus 319 ~p~~~~~yiqR~GRtGR~g~~ 339 (460)
T PRK11776 319 LARDPEVHVHRIGRTGRAGSK 339 (460)
T ss_pred CCCCHhHhhhhcccccCCCCc
Confidence 999999999999999998854
No 29
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=7.9e-23 Score=239.63 Aligned_cols=306 Identities=15% Similarity=0.196 Sum_probs=201.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-------CCCcEEEEeC-cchHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-------CKGPFLVSAP-LSTIINWEREFET 319 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-------~~~p~LIV~P-~sll~qW~~E~~k 319 (1001)
.+.|.|.+++.-++ ++.++|+..++|+|||+..+..+...+.... ....+||+|| ..|+.||.+++..
T Consensus 30 ~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 57899999997665 7889999999999999987765544332211 1123899999 5677999888887
Q ss_pred HCC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcC
Q psy10448 320 WAP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDE 395 (1001)
Q Consensus 320 ~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDE 395 (1001)
+.. ++.+..++|......... .....++|+|+|++.+..... .+.-..+.+|||||
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~--------------------~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLK--------------------VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHH--------------------HhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 753 466666666543322211 111246899999999876542 23334578999999
Q ss_pred ccccCCcc--cHHHHHHhccc---ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhh
Q psy10448 396 AHRLKSNQ--SKFFKFLSGYS---IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDL 470 (1001)
Q Consensus 396 AH~lKN~~--Sk~~~al~~l~---~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~l 470 (1001)
||++-... ..+...+..+. ....+++|||.-. .+.++.. . .+
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~--~------------------------------~~ 212 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELAF--E------------------------------HM 212 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHHH--H------------------------------HC
Confidence 99985433 22233333343 2335889999631 1111100 0 00
Q ss_pred cCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhh
Q psy10448 471 LGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAA 550 (1001)
Q Consensus 471 L~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~ 550 (1001)
-.|..+.-.... ....... +.+.+.
T Consensus 213 ~~p~~i~v~~~~---~~~~~i~-------------------------------------------------~~~~~~--- 237 (423)
T PRK04837 213 NNPEYVEVEPEQ---KTGHRIK-------------------------------------------------EELFYP--- 237 (423)
T ss_pred CCCEEEEEcCCC---cCCCcee-------------------------------------------------EEEEeC---
Confidence 011111000000 0000000 000000
Q ss_pred hcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 551 EEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 551 ~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
....|+.+|..++...
T Consensus 238 ----------------~~~~k~~~l~~ll~~~------------------------------------------------ 253 (423)
T PRK04837 238 ----------------SNEEKMRLLQTLIEEE------------------------------------------------ 253 (423)
T ss_pred ----------------CHHHHHHHHHHHHHhc------------------------------------------------
Confidence 0012333444443220
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
...++|||++....++.+...|...|+++..++|.++.++|..+++.|+++... +|++|.++++|||++.+
T Consensus 254 ------~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 254 ------WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD---ILVATDVAARGLHIPAV 324 (423)
T ss_pred ------CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc---EEEEechhhcCCCcccc
Confidence 113567999999999999999999999999999999999999999999987654 89999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhhccCc
Q psy10448 711 DTVIIYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 711 d~VIi~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
++||+||+|+++..|+||+||++|.|+.
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~ 352 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGAS 352 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCC
Confidence 9999999999999999999999998854
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=1.1e-22 Score=239.30 Aligned_cols=310 Identities=16% Similarity=0.189 Sum_probs=202.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC----CCCCcEEEEeC-cchHHHHHHHHHHHC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG----HCKGPFLVSAP-LSTIINWEREFETWA 321 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~----~~~~p~LIV~P-~sll~qW~~E~~k~~ 321 (1001)
.++.++|.+++..+. .+.++|+...+|.|||..++..+...+... .....+||++| ..|+.|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 358899999997765 677899999999999998766554433221 11234899999 457788888887775
Q ss_pred C--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCcc
Q psy10448 322 P--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 322 p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH 397 (1001)
. +..+..+.|......... .....++|+|+|++.+..... .+....+.+|||||||
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~--------------------~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah 157 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAE--------------------VFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 157 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHH--------------------HhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH
Confidence 3 466777777543322111 112346899999998876532 2233456789999999
Q ss_pred ccCCcc--cHHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCe
Q psy10448 398 RLKSNQ--SKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPH 474 (1001)
Q Consensus 398 ~lKN~~--Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~ 474 (1001)
++-... ..+...+..+. ....+++|||+-...+.++... +. -.+.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~------------------~~--------------~~~~ 205 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAER------------------LL--------------NDPV 205 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHH------------------Hc--------------cCCE
Confidence 986432 22222233332 2356899999743222221110 00 0011
Q ss_pred eeeeeHhHHhhcCCCceEEE-EEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcC
Q psy10448 475 MLRRLKADVLKNMPSKSEFI-VRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEA 553 (1001)
Q Consensus 475 ~lRR~K~dv~~~LP~k~e~~-v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~ 553 (1001)
.+.-.... .......+. +.++
T Consensus 206 ~i~~~~~~---~~~~~i~~~~~~~~------------------------------------------------------- 227 (434)
T PRK11192 206 EVEAEPSR---RERKKIHQWYYRAD------------------------------------------------------- 227 (434)
T ss_pred EEEecCCc---ccccCceEEEEEeC-------------------------------------------------------
Confidence 10000000 000000000 0000
Q ss_pred CcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 554 PVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 554 ~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
....|..+|..++.. .
T Consensus 228 -------------~~~~k~~~l~~l~~~----~----------------------------------------------- 243 (434)
T PRK11192 228 -------------DLEHKTALLCHLLKQ----P----------------------------------------------- 243 (434)
T ss_pred -------------CHHHHHHHHHHHHhc----C-----------------------------------------------
Confidence 001233333333321 0
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
...++|||++....++.|...|...|+.+..++|+++..+|..+++.|+++... +|++|.++++|||++.+++|
T Consensus 244 ---~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~---vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 244 ---EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN---VLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred ---CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc---EEEEccccccCccCCCCCEE
Confidence 124567999999999999999999999999999999999999999999986554 89999999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 714 IIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 714 Ii~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|+||+|+++..|+||+||++|.|....
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ 344 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGT 344 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCce
Confidence 999999999999999999999886543
No 31
>KOG0354|consensus
Probab=99.91 E-value=1.3e-22 Score=238.97 Aligned_cols=396 Identities=19% Similarity=0.215 Sum_probs=226.5
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP 322 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 322 (1001)
...+.||+||.+-+.-.+ +.|+|+|-.||+|||+.|+.++...++..+. +.+++.||. .|+.|-...|..++-
T Consensus 58 p~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred cCcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccC
Confidence 356899999999886442 7789999999999999999999998887765 569999994 577887788888774
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcC---CceeEEEEcCcccc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGS---IEWAVLVVDEAHRL 399 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~---~~w~~VIiDEAH~l 399 (1001)
...+....|+...+.... ......+|+++|.+++.++...... ..|.++||||||+.
T Consensus 132 ~~~~T~~l~~~~~~~~r~--------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 132 PYSVTGQLGDTVPRSNRG--------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRT 191 (746)
T ss_pred cccceeeccCccCCCchh--------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccc
Confidence 455555555433322111 1233568999999999998654332 34899999999996
Q ss_pred C-Cc-ccHHHHHHhccc--ccceEeeecCCCCCCHHHHHHhhhccCCCCCC--ChhHHHHHHccc------------cHH
Q psy10448 400 K-SN-QSKFFKFLSGYS--IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFN--DLTSFQAEFADI------------SKE 461 (1001)
Q Consensus 400 K-N~-~Sk~~~al~~l~--~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~--~~~~F~~~f~~~------------~~~ 461 (1001)
. |. .+...+.+...+ ..+.|+|||||- ++.+...+.+.=|... +. ....-...|... ...
T Consensus 192 ~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~ 269 (746)
T KOG0354|consen 192 SKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCER 269 (746)
T ss_pred cccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhh
Confidence 4 32 245554554443 336799999998 6666665555444332 11 111112222110 011
Q ss_pred HHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcC--CHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHH--
Q psy10448 462 EQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVEL--SPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLK-- 537 (1001)
Q Consensus 462 ~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~L--s~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LR-- 537 (1001)
.....|..++.|+|.+-... +|.+.....-.-+. ...++..+ . .........+..+..+.
T Consensus 270 ~~~~~f~~~i~p~l~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~q~~~f~~~~~~~~~ 333 (746)
T KOG0354|consen 270 DIEDPFGMIIEPLLQQLQEE----GLIEISDKSTSYEQWVVQAEKAAA-----------P-NGPENQRNCFYALHLRKYN 333 (746)
T ss_pred hhhhhHHHHHHHHHHHHHhc----Cccccccccccccchhhhhhhhhc-----------c-CCCccchhhHHHHHHHHHH
Confidence 12233444444443221111 11111000000000 00000000 0 00000000000000000
Q ss_pred --HHhcCCCCCchhhhcC--CcCCChh---------------------hHHHHH----HhhchHHHHHHHHHHHHHcCCc
Q psy10448 538 --KCCNHPYLFPAAAEEA--PVQGGQY---------------------EIQALT----RAAGKLVLLSKMLKKLKEDGHR 588 (1001)
Q Consensus 538 --k~c~HP~L~~~~~~~~--~~~~~~~---------------------~~~~l~----~~S~Kl~~L~klL~~l~~~g~r 588 (1001)
...+|-.-+....... ....... +...+. ...+|+..|.+.+....+
T Consensus 334 ~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~---- 409 (746)
T KOG0354|consen 334 LALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE---- 409 (746)
T ss_pred HHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh----
Confidence 0011110000000000 0000000 000000 012233333333322221
Q ss_pred cccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhh---CCCeE
Q psy10448 589 YGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDG---EGYKY 665 (1001)
Q Consensus 589 vli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~---~gi~~ 665 (1001)
.....++|||+.++..++.|..+|.. .|++.
T Consensus 410 ----------------------------------------------~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 410 ----------------------------------------------QNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred ----------------------------------------------cCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 23456889999999999999999883 26676
Q ss_pred EEEEc--------cCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccC
Q psy10448 666 ERIDG--------NITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 666 ~ridG--------~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq 737 (1001)
..+-| +|+..+.+++|+.|++|... +|++|.+|.+|||+..||.||.||..-||.+++||+|| +|..+
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~n 519 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARN 519 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccC
Confidence 66666 57788999999999997665 89999999999999999999999999999999999999 77653
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=5.3e-23 Score=243.81 Aligned_cols=303 Identities=20% Similarity=0.181 Sum_probs=202.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
.++|+|.+++.-+. .++++++..+||.|||+..+..+.. ..+.+|||+| .+|+.+|.+.+... +..+
T Consensus 11 ~~r~~Q~~ai~~~l----~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 11 SFRPVQLEVINAVL----LGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 68999999998766 6778999999999999876544322 1346899999 57778899988875 3445
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH---hhh-cCCceeEEEEcCccccCCc
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV---ALL-GSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~---~~L-~~~~w~~VIiDEAH~lKN~ 402 (1001)
....+.........-. .. ....+++++++|++.+.... ..+ ......+|||||||.+...
T Consensus 79 ~~l~~~~~~~~~~~i~----~~------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~ 142 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVL----TD------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQW 142 (470)
T ss_pred EEEeCCCCHHHHHHHH----HH------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcc
Confidence 5555443322111000 00 11235789999999986543 233 3456889999999998543
Q ss_pred cc-------HHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee
Q psy10448 403 QS-------KFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM 475 (1001)
Q Consensus 403 ~S-------k~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~ 475 (1001)
.. .+......+.....++|||||-.....++...+.+-.|..+..
T Consensus 143 g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---------------------------- 194 (470)
T TIGR00614 143 GHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---------------------------- 194 (470)
T ss_pred ccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC----------------------------
Confidence 32 1112223344556899999997655555555444332211100
Q ss_pred eeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 476 LRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 476 lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
. . +-|.. ...+.-..
T Consensus 195 ---s---~--~r~nl-~~~v~~~~-------------------------------------------------------- 209 (470)
T TIGR00614 195 ---S---F--DRPNL-YYEVRRKT-------------------------------------------------------- 209 (470)
T ss_pred ---C---C--CCCCc-EEEEEeCC--------------------------------------------------------
Confidence 0 0 00000 00000000
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
...+..+...+.+ ...+
T Consensus 210 -------------~~~~~~l~~~l~~-~~~~------------------------------------------------- 226 (470)
T TIGR00614 210 -------------PKILEDLLRFIRK-EFKG------------------------------------------------- 226 (470)
T ss_pred -------------ccHHHHHHHHHHH-hcCC-------------------------------------------------
Confidence 0000001111111 0011
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII 715 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi 715 (1001)
++.|||+.....++.+...|...|+.+..++|+++.++|..+++.|..+... +|++|.+.|.|||++.+++||+
T Consensus 227 ---~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~ 300 (470)
T TIGR00614 227 ---KSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIH 300 (470)
T ss_pred ---CceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEEEechhhccCCcccceEEEE
Confidence 2346999999999999999999999999999999999999999999986554 8999999999999999999999
Q ss_pred ecCCCCcchhhhhhhhhhhccCccc
Q psy10448 716 YDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 716 ~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
||+|.++..|+||+||++|.|+.+.
T Consensus 301 ~~~P~s~~~y~Qr~GRaGR~G~~~~ 325 (470)
T TIGR00614 301 YSLPKSMESYYQESGRAGRDGLPSE 325 (470)
T ss_pred eCCCCCHHHHHhhhcCcCCCCCCce
Confidence 9999999999999999999997655
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=1.2e-22 Score=239.85 Aligned_cols=306 Identities=17% Similarity=0.219 Sum_probs=201.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC------CCcEEEEeC-cchHHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC------KGPFLVSAP-LSTIINWEREFETW 320 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~------~~p~LIV~P-~sll~qW~~E~~k~ 320 (1001)
.+.|+|.+++.-+. .+.++|+...+|+|||+..+..+...+..... ...+||||| ..|+.||.+++..+
T Consensus 23 ~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 68899999997765 67889999999999999977665554432211 113899999 56779999999987
Q ss_pred CC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCc
Q psy10448 321 AP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEA 396 (1001)
Q Consensus 321 ~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEA 396 (1001)
.. .+.+....|......... .....++|+|+|++.+..... .+.-....+||||||
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~--------------------~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMM--------------------KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHH--------------------HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 64 345555555443222111 112356899999999876432 222345789999999
Q ss_pred cccCCcc--cHHHHHHhcccc-cceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC-
Q psy10448 397 HRLKSNQ--SKFFKFLSGYSI-QNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG- 472 (1001)
Q Consensus 397 H~lKN~~--Sk~~~al~~l~~-~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~- 472 (1001)
|++-... ..+...+..+.. ...+++|||+-. .+.++.. .++.
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~~---------------------------------~~~~~ 204 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALAE---------------------------------KLLHN 204 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHHH---------------------------------HHcCC
Confidence 9985433 223334444533 346999999632 1111111 0110
Q ss_pred CeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhc
Q psy10448 473 PHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEE 552 (1001)
Q Consensus 473 ~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~ 552 (1001)
+..+.-..... ..+......+.++
T Consensus 205 ~~~i~~~~~~~--~~~~i~~~~~~~~------------------------------------------------------ 228 (456)
T PRK10590 205 PLEIEVARRNT--ASEQVTQHVHFVD------------------------------------------------------ 228 (456)
T ss_pred CeEEEEecccc--cccceeEEEEEcC------------------------------------------------------
Confidence 11110000000 0000000000000
Q ss_pred CCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccccc
Q psy10448 553 APVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDEN 632 (1001)
Q Consensus 553 ~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1001)
...|..++..++. .+
T Consensus 229 ---------------~~~k~~~l~~l~~----~~---------------------------------------------- 243 (456)
T PRK10590 229 ---------------KKRKRELLSQMIG----KG---------------------------------------------- 243 (456)
T ss_pred ---------------HHHHHHHHHHHHH----cC----------------------------------------------
Confidence 0011112222221 11
Q ss_pred ccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 633 EDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 633 ~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
...++|||++....++.|...|...|+.+..++|.++..+|..+++.|.++... +|++|.++++|||++.+++
T Consensus 244 ----~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~ 316 (456)
T PRK10590 244 ----NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR---VLVATDIAARGLDIEELPH 316 (456)
T ss_pred ----CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEccHHhcCCCcccCCE
Confidence 113567999999999999999999999999999999999999999999986554 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCcc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
||+||+|.++..|+||+||++|.|...
T Consensus 317 VI~~~~P~~~~~yvqR~GRaGR~g~~G 343 (456)
T PRK10590 317 VVNYELPNVPEDYVHRIGRTGRAAATG 343 (456)
T ss_pred EEEeCCCCCHHHhhhhccccccCCCCe
Confidence 999999999999999999999988543
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.91 E-value=1.2e-22 Score=243.18 Aligned_cols=306 Identities=19% Similarity=0.208 Sum_probs=200.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHH-HHHc------CCCCCcEEEEeC-cchHHHHHHHHH
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS-LFKE------GHCKGPFLVSAP-LSTIINWEREFE 318 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~-l~~~------~~~~~p~LIV~P-~sll~qW~~E~~ 318 (1001)
..+.|+|.+++..+. .++++|+..++|+|||+..+..+.. +... ......+|||+| ..|+.|+.+++.
T Consensus 142 ~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 369999999997765 7889999999999999987765443 2211 111234899999 557788998888
Q ss_pred HHCCC--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEc
Q psy10448 319 TWAPD--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVD 394 (1001)
Q Consensus 319 k~~p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiD 394 (1001)
.+... +.+....|.......+. .....++|+|+|++.+..... .+.-....+||+|
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~--------------------~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViD 277 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLY--------------------RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLD 277 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHH--------------------HhcCCCCEEEECHHHHHHHHHcCCccchheeEEEee
Confidence 87643 34444444332221111 112246899999998865432 2223356799999
Q ss_pred CccccCCc--ccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC
Q psy10448 395 EAHRLKSN--QSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG 472 (1001)
Q Consensus 395 EAH~lKN~--~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~ 472 (1001)
|||++-.. .....+.+..+.....+++|||.-. .+..+ ... ++.
T Consensus 278 Ead~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~l---~~~------------------------------~~~ 323 (518)
T PLN00206 278 EVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVEKF---ASS------------------------------LAK 323 (518)
T ss_pred cHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHHHH---HHH------------------------------hCC
Confidence 99998543 2344455566666788999999632 11111 110 111
Q ss_pred C-eeeeeeHhHHhhcCCCce--EEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchh
Q psy10448 473 P-HMLRRLKADVLKNMPSKS--EFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAA 549 (1001)
Q Consensus 473 ~-~~lRR~K~dv~~~LP~k~--e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~ 549 (1001)
. ..+..... ..|... ...+.++-
T Consensus 324 ~~~~i~~~~~----~~~~~~v~q~~~~~~~-------------------------------------------------- 349 (518)
T PLN00206 324 DIILISIGNP----NRPNKAVKQLAIWVET-------------------------------------------------- 349 (518)
T ss_pred CCEEEEeCCC----CCCCcceeEEEEeccc--------------------------------------------------
Confidence 1 11110000 011110 01111110
Q ss_pred hhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccc
Q psy10448 550 AEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWE 629 (1001)
Q Consensus 550 ~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1001)
..|...|..++.......
T Consensus 350 -------------------~~k~~~l~~~l~~~~~~~------------------------------------------- 367 (518)
T PLN00206 350 -------------------KQKKQKLFDILKSKQHFK------------------------------------------- 367 (518)
T ss_pred -------------------hhHHHHHHHHHHhhcccC-------------------------------------------
Confidence 011112222222111111
Q ss_pred cccccCCCCceeEEEeccHHHHHHHHHHHhh-CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccc
Q psy10448 630 DENEDIPGLKESIEFYNMTKMLDILEDYLDG-EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLA 708 (1001)
Q Consensus 630 ~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~-~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~ 708 (1001)
.++|||++....++.|...|.. .|+++..++|+++..+|..+++.|.++... +|++|.++++|||++
T Consensus 368 ---------~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~---ILVaTdvl~rGiDip 435 (518)
T PLN00206 368 ---------PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP---VIVATGVLGRGVDLL 435 (518)
T ss_pred ---------CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEEecHhhccCCcc
Confidence 2466999999999999999975 699999999999999999999999987654 899999999999999
Q ss_pred cCCEEEEecCCCCcchhhhhhhhhhhccCc
Q psy10448 709 TADTVIIYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 709 ~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
.+++||+||+|.++..|+||+||++|.|..
T Consensus 436 ~v~~VI~~d~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 436 RVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred cCCEEEEeCCCCCHHHHHHhccccccCCCC
Confidence 999999999999999999999999998854
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=3.8e-22 Score=237.17 Aligned_cols=308 Identities=17% Similarity=0.234 Sum_probs=202.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC-------CCcEEEEeC-cchHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC-------KGPFLVSAP-LSTIINWEREFET 319 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~-------~~p~LIV~P-~sll~qW~~E~~k 319 (1001)
.+.++|.+++..+. .+.++|++..+|+|||+..+..+...+..... ...+|||+| ..|..||.+++..
T Consensus 109 ~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 58999999998765 78899999999999998876554443322211 224899999 6777999998888
Q ss_pred HCC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcC
Q psy10448 320 WAP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDE 395 (1001)
Q Consensus 320 ~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDE 395 (1001)
+.. +..+..++|..+.....+.. ....++|+|+|++.+..... .+.-....+|||||
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~-------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQL-------------------EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHH-------------------hCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 753 45677777764433222211 12346899999999965432 11223467999999
Q ss_pred ccccCCcc--cHHHHHHhccc---ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhh
Q psy10448 396 AHRLKSNQ--SKFFKFLSGYS---IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDL 470 (1001)
Q Consensus 396 AH~lKN~~--Sk~~~al~~l~---~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~l 470 (1001)
||++.+.. ..+.+.+..+. ....+++|||... ++.++... | .
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~~------------------~--------------~ 292 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNLAKQ------------------W--------------T 292 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHHHHH------------------h--------------c
Confidence 99986543 22333444432 2457999999532 12111110 0 0
Q ss_pred cCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhh
Q psy10448 471 LGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAA 550 (1001)
Q Consensus 471 L~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~ 550 (1001)
..+..+.-....+ ..+.....+.+
T Consensus 293 ~~~~~v~~~~~~~---~~~~~~~~~~~----------------------------------------------------- 316 (475)
T PRK01297 293 TDPAIVEIEPENV---ASDTVEQHVYA----------------------------------------------------- 316 (475)
T ss_pred cCCEEEEeccCcC---CCCcccEEEEE-----------------------------------------------------
Confidence 0111110000000 00000000000
Q ss_pred hcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 551 EEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 551 ~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
+..+.|..+|..++.. .
T Consensus 317 ---------------~~~~~k~~~l~~ll~~----~-------------------------------------------- 333 (475)
T PRK01297 317 ---------------VAGSDKYKLLYNLVTQ----N-------------------------------------------- 333 (475)
T ss_pred ---------------ecchhHHHHHHHHHHh----c--------------------------------------------
Confidence 0011223333333321 0
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
...++|||++....++.|...|...|+.+..++|.++..+|.++++.|+++... +|++|.++++|||++.+
T Consensus 334 ------~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v 404 (475)
T PRK01297 334 ------PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR---VLVATDVAGRGIHIDGI 404 (475)
T ss_pred ------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc---EEEEccccccCCcccCC
Confidence 113567999999999999999999999999999999999999999999987654 89999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhhccCcc
Q psy10448 711 DTVIIYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 711 d~VIi~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
++||+||.|+++..|+||+||++|.|+..
T Consensus 405 ~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g 433 (475)
T PRK01297 405 SHVINFTLPEDPDDYVHRIGRTGRAGASG 433 (475)
T ss_pred CEEEEeCCCCCHHHHHHhhCccCCCCCCc
Confidence 99999999999999999999999988653
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.91 E-value=3.6e-22 Score=242.09 Aligned_cols=309 Identities=17% Similarity=0.240 Sum_probs=205.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC---C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA---P 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~---p 322 (1001)
.++.|+|.+++..+. .+..+|+...+|+|||.+.+..+...+........+||+|| ..|+.||.+++.++. +
T Consensus 27 ~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 368999999998776 67789999999999999875544443333322334899999 567799999988764 5
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccC
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lK 400 (1001)
+..++.++|.......++. .....+|+|+|++.+..... .+.-....+|||||||.+-
T Consensus 103 ~i~v~~~~gG~~~~~q~~~--------------------l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml 162 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRA--------------------LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML 162 (629)
T ss_pred CceEEEEECCcCHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHh
Confidence 6777777776544332221 12246899999999876543 2223356789999999875
Q ss_pred Ccc--cHHHHHHhcccc-cceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeee
Q psy10448 401 SNQ--SKFFKFLSGYSI-QNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLR 477 (1001)
Q Consensus 401 N~~--Sk~~~al~~l~~-~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lR 477 (1001)
+.. ..+...+..+.. ...+++|||.- ..+.++. ..|. -.+..+.
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------~~~l--------------~~~~~i~ 209 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRIT------------------RRFM--------------KEPQEVR 209 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHHH------------------HHHc--------------CCCeEEE
Confidence 433 334445555543 34688999952 1111111 0000 0010000
Q ss_pred eeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 478 RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 478 R~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
.. ... ...|......+.+
T Consensus 210 i~-~~~-~~~~~i~q~~~~v------------------------------------------------------------ 227 (629)
T PRK11634 210 IQ-SSV-TTRPDISQSYWTV------------------------------------------------------------ 227 (629)
T ss_pred cc-Ccc-ccCCceEEEEEEe------------------------------------------------------------
Confidence 00 000 0000000000000
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
....|...|..++... .
T Consensus 228 ---------~~~~k~~~L~~~L~~~------------------------------------------------------~ 244 (629)
T PRK11634 228 ---------WGMRKNEALVRFLEAE------------------------------------------------------D 244 (629)
T ss_pred ---------chhhHHHHHHHHHHhc------------------------------------------------------C
Confidence 0011333333333210 1
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
..++||||.....++.|...|...|+....++|.++..+|..++++|..+... +||+|.+++.|||++.+++||+||
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~---ILVATdv~arGIDip~V~~VI~~d 321 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD---ILIATDVAARGLDVERISLVVNYD 321 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---EEEEcchHhcCCCcccCCEEEEeC
Confidence 13466999999999999999999999999999999999999999999987654 899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccc
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+|.++..|+||+||++|.|....
T Consensus 322 ~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 322 IPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CCCCHHHHHHHhccccCCCCcce
Confidence 99999999999999999986543
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.90 E-value=5.1e-22 Score=231.34 Aligned_cols=307 Identities=20% Similarity=0.260 Sum_probs=198.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC--C
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD--F 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~--~ 324 (1001)
.+.|+|..++..+. .+.+.|+..++|+|||+.++..+...+........+||++| ..|+.|+.+.+...+.. .
T Consensus 50 ~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 68999999998776 77889999999999999877665555443323345899999 56678888877776533 3
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+....|....+.... ......+|+|+|++.+..... .+.-.++++|||||||++...
T Consensus 126 ~~~~~~g~~~~~~~~~--------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 126 RCHACVGGTVVRDDIN--------------------KLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred eEEEEECCcCHHHHHH--------------------HHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc
Confidence 3444445433222111 011235799999998865432 223345789999999998542
Q ss_pred --ccHHHHHHhcccc-cceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeee
Q psy10448 403 --QSKFFKFLSGYSI-QNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRL 479 (1001)
Q Consensus 403 --~Sk~~~al~~l~~-~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~ 479 (1001)
.......+..+.. ...+++|||+-. ...++. ..|. ..+..+. .
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~------------------~~~~--------------~~~~~~~-~ 231 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPN-EILELT------------------TKFM--------------RDPKRIL-V 231 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCH-HHHHHH------------------HHHc--------------CCCEEEE-e
Confidence 2344555555543 457999999632 111110 0000 0010000 0
Q ss_pred HhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCCh
Q psy10448 480 KADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQ 559 (1001)
Q Consensus 480 K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~ 559 (1001)
+.+.. .+.......+.+ ...
T Consensus 232 ~~~~~-~~~~~~~~~~~~--~~~--------------------------------------------------------- 251 (401)
T PTZ00424 232 KKDEL-TLEGIRQFYVAV--EKE--------------------------------------------------------- 251 (401)
T ss_pred CCCCc-ccCCceEEEEec--ChH---------------------------------------------------------
Confidence 00000 000000000000 000
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 560 YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 560 ~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
..+...+..++... ...
T Consensus 252 ---------~~~~~~l~~~~~~~------------------------------------------------------~~~ 268 (401)
T PTZ00424 252 ---------EWKFDTLCDLYETL------------------------------------------------------TIT 268 (401)
T ss_pred ---------HHHHHHHHHHHHhc------------------------------------------------------CCC
Confidence 00111111111110 013
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||+.....++.+...|...++.+..++|+++..+|+.+++.|+++... +|++|.++++|||++.+++||+||++
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEcccccCCcCcccCCEEEEECCC
Confidence 567999999999999999999999999999999999999999999986654 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~ 738 (1001)
.++..|+||+||++|.|..
T Consensus 346 ~s~~~y~qr~GRagR~g~~ 364 (401)
T PTZ00424 346 ASPENYIHRIGRSGRFGRK 364 (401)
T ss_pred CCHHHEeecccccccCCCC
Confidence 9999999999999998754
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=4.9e-22 Score=239.56 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=201.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-------CCCcEEEEeC-cchHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-------CKGPFLVSAP-LSTIINWEREFET 319 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-------~~~p~LIV~P-~sll~qW~~E~~k 319 (1001)
.+.|.|..++..++ .+.++|+..++|+|||+..+..+...+.... ....+||||| ..|+.|+.+++.+
T Consensus 31 ~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 68899999998776 7889999999999999988766554332111 1234899999 5677999999998
Q ss_pred HCCC--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEEc
Q psy10448 320 WAPD--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVVD 394 (1001)
Q Consensus 320 ~~p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIiD 394 (1001)
|... +.+..++|......... .....++|+|+|.+.+...... +......+||||
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~--------------------~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRE--------------------LLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHH--------------------HHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 8743 45666666543322111 0112468999999998765432 233356789999
Q ss_pred CccccCCcc--cHHHHHHhccc---ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHh
Q psy10448 395 EAHRLKSNQ--SKFFKFLSGYS---IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHD 469 (1001)
Q Consensus 395 EAH~lKN~~--Sk~~~al~~l~---~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~ 469 (1001)
|||++-... ..+...+..+. ....+++|||.-. .+.++.. .++
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l~~--~~l----------------------------- 214 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLELAY--EHM----------------------------- 214 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccH-HHHHHHH--HHh-----------------------------
Confidence 999985422 22233333343 3456899999521 1111110 000
Q ss_pred hcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchh
Q psy10448 470 LLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAA 549 (1001)
Q Consensus 470 lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~ 549 (1001)
-.+..+......+ .+....+.+.+.
T Consensus 215 -~~p~~i~v~~~~~---~~~~i~q~~~~~--------------------------------------------------- 239 (572)
T PRK04537 215 -NEPEKLVVETETI---TAARVRQRIYFP--------------------------------------------------- 239 (572)
T ss_pred -cCCcEEEeccccc---cccceeEEEEec---------------------------------------------------
Confidence 0010000000000 000000000000
Q ss_pred hhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccc
Q psy10448 550 AEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWE 629 (1001)
Q Consensus 550 ~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1001)
....|+..|..++.. ..
T Consensus 240 -----------------~~~~k~~~L~~ll~~--~~-------------------------------------------- 256 (572)
T PRK04537 240 -----------------ADEEKQTLLLGLLSR--SE-------------------------------------------- 256 (572)
T ss_pred -----------------CHHHHHHHHHHHHhc--cc--------------------------------------------
Confidence 001122233333221 01
Q ss_pred cccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc
Q psy10448 630 DENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT 709 (1001)
Q Consensus 630 ~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~ 709 (1001)
..++|||++....++.|.+.|...|+.+..++|+++..+|..+++.|.++... +||+|.++++|||++.
T Consensus 257 --------~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~---VLVaTdv~arGIDip~ 325 (572)
T PRK04537 257 --------GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE---ILVATDVAARGLHIDG 325 (572)
T ss_pred --------CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEehhhhcCCCccC
Confidence 23566999999999999999999999999999999999999999999986554 8999999999999999
Q ss_pred CCEEEEecCCCCcchhhhhhhhhhhccCcc
Q psy10448 710 ADTVIIYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 710 Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
+++||+||.|+++..|+||+||++|.|...
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G 355 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEG 355 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCc
Confidence 999999999999999999999999988654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=1.7e-21 Score=237.05 Aligned_cols=301 Identities=20% Similarity=0.184 Sum_probs=201.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
.++|+|.+++.-+. .+.++++..+||.|||+.....+.. . .+.+|||+| .+|+.+|.+.+... +..+
T Consensus 25 ~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lpal~--~----~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIPALV--L----DGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHH--c----CCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 68999999997665 7788999999999999876544332 1 345899999 67778898888875 3444
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh--HhhhcCCceeEEEEcCccccCCccc
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND--VALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d--~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
....+........... .. ......+++++|++.+... ...+...++.+|||||||.+-....
T Consensus 93 ~~~~s~~~~~~~~~~~----~~------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 93 ACLNSTQTREQQLEVM----AG------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred EEEcCCCCHHHHHHHH----HH------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccC
Confidence 4444433221111000 00 1123567999999988743 3445556788999999999854321
Q ss_pred ---HHHHHH----hcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeee
Q psy10448 405 ---KFFKFL----SGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLR 477 (1001)
Q Consensus 405 ---k~~~al----~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lR 477 (1001)
..++.+ ..+.....++||||+-.....++...+.+-.|.. ..
T Consensus 157 ~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-------------------------------~~ 205 (607)
T PRK11057 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI-------------------------------QI 205 (607)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE-------------------------------EE
Confidence 122222 2334556799999986655555544443322210 00
Q ss_pred eeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 478 RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 478 R~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
.. . +-|.....++ +
T Consensus 206 ~~---~--~r~nl~~~v~--~----------------------------------------------------------- 219 (607)
T PRK11057 206 SS---F--DRPNIRYTLV--E----------------------------------------------------------- 219 (607)
T ss_pred CC---C--CCCcceeeee--e-----------------------------------------------------------
Confidence 00 0 0000000000 0
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
...++..+...+ ... .
T Consensus 220 ----------~~~~~~~l~~~l---~~~---------------------------------------------------~ 235 (607)
T PRK11057 220 ----------KFKPLDQLMRYV---QEQ---------------------------------------------------R 235 (607)
T ss_pred ----------ccchHHHHHHHH---Hhc---------------------------------------------------C
Confidence 000000011111 100 1
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|..+... +|++|.+.|.|||++.++.||+||
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEechhhccCCCCCcCEEEEeC
Confidence 23456999999999999999999999999999999999999999999986554 899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccc
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+|.+...|+|++||++|.|..+.
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999997654
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=3.2e-21 Score=235.09 Aligned_cols=301 Identities=20% Similarity=0.238 Sum_probs=206.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
+++|+|.+++.-+. .+.+++++.+||.|||+.+...+. .. .+.++||+| .+|+.++.+.+... +..+
T Consensus 13 ~fr~~Q~~~i~~il----~g~dvlv~~PTG~GKTl~y~lpal--~~----~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVL----DGRDVLVVMPTGGGKSLCYQVPAL--LL----KGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCccHhHHHHHHHH--Hc----CCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 58999999998766 677899999999999998764443 21 346899999 67888899988875 4555
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh--HhhhcCCceeEEEEcCccccCCccc
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND--VALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d--~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
..++++.......... . .......+++++|++.+... ...+......+|||||||.+.....
T Consensus 81 ~~~~s~~~~~~~~~~~----~------------~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~ 144 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIE----K------------ALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGH 144 (591)
T ss_pred EEEeCCCCHHHHHHHH----H------------HHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccC
Confidence 5555544322211100 0 01123568999999998653 3445666789999999999854221
Q ss_pred -------HHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeee
Q psy10448 405 -------KFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLR 477 (1001)
Q Consensus 405 -------k~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lR 477 (1001)
.+......+.....++||||+-.....++...+.+-.+..+.. .|
T Consensus 145 ~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~---------------------- 196 (591)
T TIGR01389 145 DFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF---------------------- 196 (591)
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC----------------------
Confidence 2222333444455899999987665555555443322211100 00
Q ss_pred eeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 478 RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 478 R~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
+-|.....++. .
T Consensus 197 --------~r~nl~~~v~~-~----------------------------------------------------------- 208 (591)
T TIGR01389 197 --------DRPNLRFSVVK-K----------------------------------------------------------- 208 (591)
T ss_pred --------CCCCcEEEEEe-C-----------------------------------------------------------
Confidence 00100000000 0
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
..+...+...+... .+
T Consensus 209 -----------~~~~~~l~~~l~~~--~~--------------------------------------------------- 224 (591)
T TIGR01389 209 -----------NNKQKFLLDYLKKH--RG--------------------------------------------------- 224 (591)
T ss_pred -----------CCHHHHHHHHHHhc--CC---------------------------------------------------
Confidence 00111111122110 01
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
.+.||||......+.+...|...|+++..+||+++.++|..+++.|..+.. .+|++|.+.|.|||+++++.||+||
T Consensus 225 -~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~---~vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 225 -QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV---KVMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred -CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEechhhccCcCCCCCEEEEcC
Confidence 245699999999999999999999999999999999999999999988654 4899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccc
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+|.|...|.|++||++|.|..+.
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G~~~~ 323 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDGLPAE 323 (591)
T ss_pred CCCCHHHHhhhhccccCCCCCce
Confidence 99999999999999999997655
No 41
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.88 E-value=8.3e-21 Score=240.70 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=87.5
Q ss_pred ceeEEEeccHHHHHHHHHHHhhC------CC---eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGE------GY---KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT 709 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~------gi---~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~ 709 (1001)
.|+||||.....++.+.+.|... ++ .+..++|+++ +++.+|++|.++... .+++|++..++|+|++.
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCccc
Confidence 58889999999988888777642 22 3467899875 578899999886544 68999999999999999
Q ss_pred CCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCC
Q psy10448 710 ADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSD 756 (1001)
Q Consensus 710 Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~ 756 (1001)
+++||+++++-++..|+|++||+.|..... +-....++|..
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~------~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEI------GKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccC------CCceEEEEehH
Confidence 999999999999999999999999987520 23456666653
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=8.8e-21 Score=231.84 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=110.4
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHH
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETW 320 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~ 320 (1001)
..+++|.++|.+++..+....... .+.+|..++|+|||+.++..+......+ ..++|++|. .|..||.+++.++
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g---~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG---YQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEECCHHHHHHHHHHHHHHH
Confidence 456789999999999887655333 3689999999999999876666555443 358999995 5669999999999
Q ss_pred CC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccc
Q psy10448 321 AP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 321 ~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~ 398 (1001)
++ +..+.+++|+..........+ .......+|+|+|+..+..... + .+..+|||||+|+
T Consensus 308 ~~~~gi~v~lltg~~~~~~r~~~~~----------------~i~~g~~~IiVgT~~ll~~~~~-~--~~l~lvVIDEaH~ 368 (630)
T TIGR00643 308 LAPLGIEVALLTGSLKGKRRKELLE----------------TIASGQIHLVVGTHALIQEKVE-F--KRLALVIIDEQHR 368 (630)
T ss_pred hcccCcEEEEEecCCCHHHHHHHHH----------------HHhCCCCCEEEecHHHHhcccc-c--cccceEEEechhh
Confidence 86 477888888654332111000 0122357899999998864322 2 3467999999999
Q ss_pred cCCcccHHHHHHh-ccc---ccceEeeecCCCCC
Q psy10448 399 LKSNQSKFFKFLS-GYS---IQNKLLLTGTPLQN 428 (1001)
Q Consensus 399 lKN~~Sk~~~al~-~l~---~~~rllLTGTPlqN 428 (1001)
+.- .....+. ... ..+.+++||||+..
T Consensus 369 fg~---~qr~~l~~~~~~~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 369 FGV---EQRKKLREKGQGGFTPHVLVMSATPIPR 399 (630)
T ss_pred ccH---HHHHHHHHhcccCCCCCEEEEeCCCCcH
Confidence 742 2222222 222 56789999999764
No 43
>KOG1123|consensus
Probab=99.87 E-value=1.9e-21 Score=214.32 Aligned_cols=342 Identities=23% Similarity=0.348 Sum_probs=225.3
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHCC--
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAP-- 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-- 322 (1001)
..++||||...++.|. .-...+.||+.-.+|.|||+..++.+... ++.+||+|..+ -+.||..+|..|..
T Consensus 300 st~iRpYQEksL~KMF-GNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMF-GNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred ccccCchHHHHHHHHh-CCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 4579999999998774 11123368999999999999988877654 34589999855 47999999999972
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHh----------hHhhhcCCceeEEE
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITN----------DVALLGSIEWAVLV 392 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~----------d~~~L~~~~w~~VI 392 (1001)
+-.+..+..+...+ ......|+||||.++.. -...+....|.++|
T Consensus 373 d~~i~rFTsd~Ke~-------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGlll 427 (776)
T KOG1123|consen 373 DDQICRFTSDAKER-------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLL 427 (776)
T ss_pred ccceEEeecccccc-------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEE
Confidence 34555555443221 22345699999999964 24678888999999
Q ss_pred EcCccccCCcccHHHH-HHhcccccceEeeecCCCCCCHHHHHHhhhcc-CCCCCCChhHHHHHHccccHHHHHHHHHhh
Q psy10448 393 VDEAHRLKSNQSKFFK-FLSGYSIQNKLLLTGTPLQNNLEELFHLLNFL-TPEKFNDLTSFQAEFADISKEEQVKRLHDL 470 (1001)
Q Consensus 393 iDEAH~lKN~~Sk~~~-al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL-~p~~f~~~~~F~~~f~~~~~~~~~~~L~~l 470 (1001)
+||.|-+ .++.++ .+.-+.++.+|+||||-+..+ |=..=|+|| .|..+.- .|.+ |.+
T Consensus 428 lDEVHvv---PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA--nWmd-------------L~~- 486 (776)
T KOG1123|consen 428 LDEVHVV---PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMD-------------LQK- 486 (776)
T ss_pred eehhccc---hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc--cHHH-------------HHh-
Confidence 9999987 345554 445568899999999988753 122224554 3433211 0110 100
Q ss_pred cCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhh
Q psy10448 471 LGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAA 550 (1001)
Q Consensus 471 L~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~ 550 (1001)
.. .+..-.--.|+|+||+.- |+..+..+...- .++.
T Consensus 487 -kG------------hIA~VqCaEVWCpMt~eF---y~eYL~~~t~kr---------~lLy------------------- 522 (776)
T KOG1123|consen 487 -KG------------HIAKVQCAEVWCPMTPEF---YREYLRENTRKR---------MLLY------------------- 522 (776)
T ss_pred -CC------------ceeEEeeeeeecCCCHHH---HHHHHhhhhhhh---------heee-------------------
Confidence 00 122233456899999764 444443221100 0000
Q ss_pred hcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 551 EEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 551 ~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
+-...|+....-+++.....|
T Consensus 523 ---------------vMNP~KFraCqfLI~~HE~Rg-------------------------------------------- 543 (776)
T KOG1123|consen 523 ---------------VMNPNKFRACQFLIKFHERRG-------------------------------------------- 543 (776)
T ss_pred ---------------ecCcchhHHHHHHHHHHHhcC--------------------------------------------
Confidence 001234444444454444433
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
+|+||||..+-.|.... -..|-+ .|.|.++..+|-++++.|+..+....+|| +++|...|+|+.|
T Consensus 544 --------DKiIVFsDnvfALk~YA---ikl~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFl--SKVgDtSiDLPEA 608 (776)
T KOG1123|consen 544 --------DKIIVFSDNVFALKEYA---IKLGKP--FIYGPTSQNERMKILQNFQTNPKVNTIFL--SKVGDTSIDLPEA 608 (776)
T ss_pred --------CeEEEEeccHHHHHHHH---HHcCCc--eEECCCchhHHHHHHHhcccCCccceEEE--eeccCccccCCcc
Confidence 56779998877665443 333444 47899999999999999997555443444 7899999999999
Q ss_pred CEEEEecCCCCc-chhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCH
Q psy10448 711 DTVIIYDSDWNP-HNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSV 789 (1001)
Q Consensus 711 d~VIi~D~~WNP-~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~Ti 789 (1001)
+.+|-..+.... .+..||.||+.|.-..++ ..-.++.|-||+.+|.
T Consensus 609 nvLIQISSH~GSRRQEAQRLGRILRAKk~~d---------------------------------e~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 609 NVLIQISSHGGSRRQEAQRLGRILRAKKRND---------------------------------EEFNAFFYSLVSKDTQ 655 (776)
T ss_pred cEEEEEcccccchHHHHHHHHHHHHHhhcCc---------------------------------cccceeeeeeeecchH
Confidence 999999988544 556788888888664332 1225899999999998
Q ss_pred HH
Q psy10448 790 EE 791 (1001)
Q Consensus 790 EE 791 (1001)
|-
T Consensus 656 EM 657 (776)
T KOG1123|consen 656 EM 657 (776)
T ss_pred HH
Confidence 74
No 44
>KOG0331|consensus
Probab=99.87 E-value=8.4e-21 Score=217.97 Aligned_cols=311 Identities=21% Similarity=0.241 Sum_probs=214.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHH-HHHHHHc----CCCCCc-EEEEeCcc-hHHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITF-LYSLFKE----GHCKGP-FLVSAPLS-TIINWEREFETW 320 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~-l~~l~~~----~~~~~p-~LIV~P~s-ll~qW~~E~~k~ 320 (1001)
.+.|-|..+.-.++ .++.+|....+|+|||+.-+.- +.++... ....+| +||++|.. |..|-..++.++
T Consensus 113 ~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 57788888765554 7889999999999999986543 3333331 223355 89999954 667888899998
Q ss_pred CCCCe--EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCc
Q psy10448 321 APDFY--VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEA 396 (1001)
Q Consensus 321 ~p~~~--vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEA 396 (1001)
+..+. .++.+|.......++ ......+|+|+|...+..... .+.-.+..++|+|||
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~--------------------~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLR--------------------DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHH--------------------HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 86554 555555544443333 233457899999999987653 344456789999999
Q ss_pred cccC--CcccHHHHHHhcc-cccc-eEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC
Q psy10448 397 HRLK--SNQSKFFKFLSGY-SIQN-KLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG 472 (1001)
Q Consensus 397 H~lK--N~~Sk~~~al~~l-~~~~-rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~ 472 (1001)
.++- ....++.+.+..+ +... .++-|||=- .++.. |..
T Consensus 249 DrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp----~~v~~---------------lA~------------------- 290 (519)
T KOG0331|consen 249 DRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWP----KEVRQ---------------LAE------------------- 290 (519)
T ss_pred HhhhccccHHHHHHHHHhcCCCcccEEEEeeecc----HHHHH---------------HHH-------------------
Confidence 9985 3557778888888 4443 577777731 11100 000
Q ss_pred CeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhc
Q psy10448 473 PHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEE 552 (1001)
Q Consensus 473 ~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~ 552 (1001)
+.+. .| ....+... . +. .....+.++-..
T Consensus 291 ---------~fl~-~~-~~i~ig~~---~-~~-----------------------~a~~~i~qive~------------- 319 (519)
T KOG0331|consen 291 ---------DFLN-NP-IQINVGNK---K-EL-----------------------KANHNIRQIVEV------------- 319 (519)
T ss_pred ---------HHhc-Cc-eEEEecch---h-hh-----------------------hhhcchhhhhhh-------------
Confidence 0000 00 00000000 0 00 000001111111
Q ss_pred CCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccccc
Q psy10448 553 APVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDEN 632 (1001)
Q Consensus 553 ~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1001)
+....|...|.++|..... +
T Consensus 320 -------------~~~~~K~~~l~~lL~~~~~-~---------------------------------------------- 339 (519)
T KOG0331|consen 320 -------------CDETAKLRKLGKLLEDISS-D---------------------------------------------- 339 (519)
T ss_pred -------------cCHHHHHHHHHHHHHHHhc-c----------------------------------------------
Confidence 1134566667777766651 1
Q ss_pred ccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 633 EDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 633 ~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
...|+||||+....++.|+..|...+++...|||..++.+|..+++.|.++... +|++|++++.|||++..++
T Consensus 340 ----~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~---vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 340 ----SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP---VLVATDVAARGLDVPDVDL 412 (519)
T ss_pred ----CCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---eEEEcccccccCCCccccE
Confidence 124677999999999999999999999999999999999999999999987665 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
||+||+|-|...|++|+||.+|.|++
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~ 438 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKK 438 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCC
Confidence 99999999999999999999997755
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=1.2e-20 Score=232.12 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=110.3
Q ss_pred CCCcccHHHHHHHHHHHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 321 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~ 321 (1001)
.+++|.++|..++.-+...+... .+.+|..++|+|||+.++..+......+ ..+||++|. .|..|+.+.+.+++
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g---~q~lilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG---YQAALMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEeccHHHHHHHHHHHHHHH
Confidence 56789999999998887655433 3689999999999999887776555432 348999995 56689999999988
Q ss_pred CC--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc
Q psy10448 322 PD--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 322 p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l 399 (1001)
+. ..+.+++|+........... .......+|+|+|+..+..... + .+..+|||||+|++
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~----------------~l~~g~~~IvVgT~~ll~~~v~-~--~~l~lvVIDE~Hrf 395 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILE----------------AIASGEADIVIGTHALIQDDVE-F--HNLGLVIIDEQHRF 395 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHH----------------HHhCCCCCEEEchHHHhcccch-h--cccceEEEechhhh
Confidence 64 67778888654322111000 0112357899999988854321 2 24678999999997
Q ss_pred CCcccHHHHHHhcc-cccceEeeecCCCCC
Q psy10448 400 KSNQSKFFKFLSGY-SIQNKLLLTGTPLQN 428 (1001)
Q Consensus 400 KN~~Sk~~~al~~l-~~~~rllLTGTPlqN 428 (1001)
. ......+... ...+.+++||||+..
T Consensus 396 g---~~qr~~l~~~~~~~~iL~~SATp~pr 422 (681)
T PRK10917 396 G---VEQRLALREKGENPHVLVMTATPIPR 422 (681)
T ss_pred h---HHHHHHHHhcCCCCCEEEEeCCCCHH
Confidence 3 2333344433 346789999999753
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.86 E-value=1.6e-20 Score=230.80 Aligned_cols=308 Identities=20% Similarity=0.151 Sum_probs=201.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCe
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFY 325 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~ 325 (1001)
-.++|+|.+++..++ .++.+|+...+|.|||+....-+... .+.+|||+| .+|+.++...+... ++.
T Consensus 459 ~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~~--GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQA--NIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHhC--CCe
Confidence 479999999998765 78899999999999999865544321 356899999 56766565665543 455
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh------Hhhhc-CCceeEEEEcCccc
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND------VALLG-SIEWAVLVVDEAHR 398 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d------~~~L~-~~~w~~VIiDEAH~ 398 (1001)
+....+........... . .+......++++++|++.+... ...+. .....+|||||||.
T Consensus 527 Aa~L~s~~s~~eq~~il----r----------~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHc 592 (1195)
T PLN03137 527 AASLSAGMEWAEQLEIL----Q----------ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHC 592 (1195)
T ss_pred EEEEECCCCHHHHHHHH----H----------HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchh
Confidence 55555543322211100 0 0001124678999999987642 11222 12367899999999
Q ss_pred cCCccc---HHHHH----HhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhc
Q psy10448 399 LKSNQS---KFFKF----LSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLL 471 (1001)
Q Consensus 399 lKN~~S---k~~~a----l~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL 471 (1001)
+-.... .-++. ...+.....++||||.......++...|.+..+.
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~---------------------------- 644 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCV---------------------------- 644 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcE----------------------------
Confidence 854321 11222 2234455679999998766666665544432221
Q ss_pred CCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhh
Q psy10448 472 GPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAE 551 (1001)
Q Consensus 472 ~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~ 551 (1001)
+++..- +-|.....++ + . ....
T Consensus 645 ---vfr~Sf-----~RpNL~y~Vv--~-k--~kk~--------------------------------------------- 666 (1195)
T PLN03137 645 ---VFRQSF-----NRPNLWYSVV--P-K--TKKC--------------------------------------------- 666 (1195)
T ss_pred ---Eeeccc-----CccceEEEEe--c-c--chhH---------------------------------------------
Confidence 111000 0111111111 0 0 0000
Q ss_pred cCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccc
Q psy10448 552 EAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 631 (1001)
Q Consensus 552 ~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1001)
+..+.+++. . .+
T Consensus 667 --------------------le~L~~~I~---~-~~-------------------------------------------- 678 (1195)
T PLN03137 667 --------------------LEDIDKFIK---E-NH-------------------------------------------- 678 (1195)
T ss_pred --------------------HHHHHHHHH---h-cc--------------------------------------------
Confidence 000111111 0 00
Q ss_pred cccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC
Q psy10448 632 NEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD 711 (1001)
Q Consensus 632 ~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad 711 (1001)
.....||||.....++.+...|...|+++..+||+++.++|..++++|..+... +|++|.|.|.|||++.++
T Consensus 679 -----~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR 750 (1195)
T PLN03137 679 -----FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVR 750 (1195)
T ss_pred -----cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCc
Confidence 011235999999999999999999999999999999999999999999987654 899999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCccccc
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNKYI 742 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~~~~L 742 (1001)
.||+||+|.+...|.|++||++|.|..+.|+
T Consensus 751 ~VIHydlPkSiEsYyQriGRAGRDG~~g~cI 781 (1195)
T PLN03137 751 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 781 (1195)
T ss_pred EEEEcCCCCCHHHHHhhhcccCCCCCCceEE
Confidence 9999999999999999999999999876633
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.86 E-value=2.9e-20 Score=231.92 Aligned_cols=301 Identities=18% Similarity=0.228 Sum_probs=196.3
Q ss_pred CCCcccHHHHHHHHHHHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 321 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~ 321 (1001)
.+.++.|+|..++..+......+ .+.+++-++|.|||..++..+......+ ..++|+||. .|+.|....|.+++
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERF 524 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 35679999999999887655443 4689999999999999886655544433 348999994 56688999999887
Q ss_pred CCC--eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc
Q psy10448 322 PDF--YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 322 p~~--~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l 399 (1001)
+.+ ++..++|............ . -...+.+|+|+|+..+.... .+ .+..+|||||+|++
T Consensus 525 ~~~~i~v~~Lsg~~~~~e~~~~~~--------------~--l~~g~~dIVIGTp~ll~~~v-~f--~~L~llVIDEahrf 585 (926)
T TIGR00580 525 ANFPVTIELLSRFRSAKEQNEILK--------------E--LASGKIDILIGTHKLLQKDV-KF--KDLGLLIIDEEQRF 585 (926)
T ss_pred ccCCcEEEEEeccccHHHHHHHHH--------------H--HHcCCceEEEchHHHhhCCC-Cc--ccCCEEEeeccccc
Confidence 544 4555555433221110000 0 11235789999997764332 12 24579999999997
Q ss_pred CCcccHHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeee
Q psy10448 400 KSNQSKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRR 478 (1001)
Q Consensus 400 KN~~Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR 478 (1001)
. ......+..+. ....++|||||+...+... +.. ...+.++
T Consensus 586 g---v~~~~~L~~~~~~~~vL~~SATpiprtl~~~--l~g-------------------------------~~d~s~I-- 627 (926)
T TIGR00580 586 G---VKQKEKLKELRTSVDVLTLSATPIPRTLHMS--MSG-------------------------------IRDLSII-- 627 (926)
T ss_pred c---hhHHHHHHhcCCCCCEEEEecCCCHHHHHHH--Hhc-------------------------------CCCcEEE--
Confidence 3 23344555553 4578999999975432210 000 0011111
Q ss_pred eHhHHhhcCCCceEE---EEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 479 LKADVLKNMPSKSEF---IVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 479 ~K~dv~~~LP~k~e~---~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
..||.... ...++.+. ..
T Consensus 628 -------~~~p~~R~~V~t~v~~~~~--~~-------------------------------------------------- 648 (926)
T TIGR00580 628 -------ATPPEDRLPVRTFVMEYDP--EL-------------------------------------------------- 648 (926)
T ss_pred -------ecCCCCccceEEEEEecCH--HH--------------------------------------------------
Confidence 01111100 00111100 00
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
+...++..+. .+..
T Consensus 649 ------------------i~~~i~~el~-~g~q----------------------------------------------- 662 (926)
T TIGR00580 649 ------------------VREAIRRELL-RGGQ----------------------------------------------- 662 (926)
T ss_pred ------------------HHHHHHHHHH-cCCe-----------------------------------------------
Confidence 0001111111 2333
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhC--CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGE--GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
++||++....++.+.+.|... ++++..+||.|+..+|.+++.+|.++... +|+||.+.+.|||++.+++|
T Consensus 663 -----v~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~---ILVaT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 663 -----VFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ---VLVCTTIIETGIDIPNANTI 734 (926)
T ss_pred -----EEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcccccccCCEE
Confidence 449999999999999999874 78999999999999999999999987665 89999999999999999999
Q ss_pred EEecCC-CCcchhhhhhhhhhhccCc
Q psy10448 714 IIYDSD-WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 714 Ii~D~~-WNP~~~iQriGRi~RiGq~ 738 (1001)
|+++.+ +...++.|++||++|.|..
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~ 760 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKK 760 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCC
Confidence 999986 4566788888888887743
No 48
>KOG0330|consensus
Probab=99.86 E-value=1.4e-20 Score=203.25 Aligned_cols=303 Identities=24% Similarity=0.305 Sum_probs=208.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCC--C
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTIT-FLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAP--D 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa-~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~ 323 (1001)
.+.+-|.+++-... +++.+|.+.++|+|||...+. ++..|+.+.. .--.||++|..-+ .|-...|+.... +
T Consensus 83 ~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-~~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 83 KPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQEPK-LFFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred CCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-CceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 46667999987766 888999999999999998554 5555655433 3237999996655 566666777753 5
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhc---CCceeEEEEcCccccC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLG---SIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~---~~~w~~VIiDEAH~lK 400 (1001)
+.+.+..|..+...... ....+.||+|.|...+......-. .-...++|+|||.++-
T Consensus 158 lr~~~lvGG~~m~~q~~--------------------~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQAN--------------------QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred eEEEEEecCchHHHHHH--------------------HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 67777888766554432 234578999999999988765322 2245689999999998
Q ss_pred Ccc--cHHHHHHhcccccce-EeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeee
Q psy10448 401 SNQ--SKFFKFLSGYSIQNK-LLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLR 477 (1001)
Q Consensus 401 N~~--Sk~~~al~~l~~~~r-llLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lR 477 (1001)
|.. -.+.+.|..+...++ +|.|||--. ++..| ...
T Consensus 218 d~dF~~~ld~ILk~ip~erqt~LfsATMt~-kv~kL----------------------------------~ra------- 255 (476)
T KOG0330|consen 218 DMDFEEELDYILKVIPRERQTFLFSATMTK-KVRKL----------------------------------QRA------- 255 (476)
T ss_pred hhhhHHHHHHHHHhcCccceEEEEEeecch-hhHHH----------------------------------Hhh-------
Confidence 754 466677777765554 777888421 22211 100
Q ss_pred eeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 478 RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 478 R~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
.+-. ++.|.-+. .|+.+ -.|.| -|++..
T Consensus 256 --------sl~~----p~~v~~s~----ky~tv-----------------------~~lkQ----~ylfv~--------- 283 (476)
T KOG0330|consen 256 --------SLDN----PVKVAVSS----KYQTV-----------------------DHLKQ----TYLFVP--------- 283 (476)
T ss_pred --------ccCC----CeEEeccc----hhcch-----------------------HHhhh----heEecc---------
Confidence 0000 01111110 01100 00110 011100
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
..-|-..|..+|+... |..
T Consensus 284 ----------~k~K~~yLV~ll~e~~--g~s------------------------------------------------- 302 (476)
T KOG0330|consen 284 ----------GKDKDTYLVYLLNELA--GNS------------------------------------------------- 302 (476)
T ss_pred ----------ccccchhHHHHHHhhc--CCc-------------------------------------------------
Confidence 0112223334443222 232
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
+||||+...+.+.+.-+|+..|+....++|.|+.+.|..+++.|+++.-. +|++|++++.|+|.+.+|+||+||
T Consensus 303 ---~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 303 ---VIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred ---EEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecchhcccCCCCCceEEEecC
Confidence 45999999999999999999999999999999999999999999986554 899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhcc
Q psy10448 718 SDWNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiG 736 (1001)
.|-+...||+|+||+.|.|
T Consensus 377 iP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred CCCcHHHHHHHcccccccC
Confidence 9999999999999999988
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.85 E-value=2.9e-19 Score=220.89 Aligned_cols=316 Identities=16% Similarity=0.167 Sum_probs=201.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC-CCCe
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA-PDFY 325 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~-p~~~ 325 (1001)
+|++||.+++..+. .+.++|++..||+|||+..+.-+...+.... ...+||++| ..|..|-..++.++. .+++
T Consensus 36 ~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 69999999998776 8889999999999999987765554443332 234899999 566678888888875 3567
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH--------hhhcCCceeEEEEcCcc
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV--------ALLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~--------~~L~~~~w~~VIiDEAH 397 (1001)
+.+|.|+........ ...+.+|+|||++++.... ..+. +..+|||||||
T Consensus 111 v~~~~Gdt~~~~r~~---------------------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah 167 (742)
T TIGR03817 111 PATYDGDTPTEERRW---------------------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECH 167 (742)
T ss_pred EEEEeCCCCHHHHHH---------------------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChh
Confidence 888888754322110 0123579999999986422 1122 35799999999
Q ss_pred ccCC-cccHHHHHHhcc--------cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHH
Q psy10448 398 RLKS-NQSKFFKFLSGY--------SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLH 468 (1001)
Q Consensus 398 ~lKN-~~Sk~~~al~~l--------~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~ 468 (1001)
.+.. ..+.+...+..+ .....+++|||.- +..++... ++.
T Consensus 168 ~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~--n~~~~~~~--l~g--------------------------- 216 (742)
T TIGR03817 168 SYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTA--DPAAAASR--LIG--------------------------- 216 (742)
T ss_pred hccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC--CHHHHHHH--HcC---------------------------
Confidence 9865 233333333332 1245799999952 22332111 100
Q ss_pred hhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCch
Q psy10448 469 DLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPA 548 (1001)
Q Consensus 469 ~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~ 548 (1001)
.++.+ ... ..-|......+........ ..... +
T Consensus 217 ---~~~~~--i~~---~~~~~~~~~~~~~~p~~~~--------------~~~~~-~------------------------ 249 (742)
T TIGR03817 217 ---APVVA--VTE---DGSPRGARTVALWEPPLTE--------------LTGEN-G------------------------ 249 (742)
T ss_pred ---CCeEE--ECC---CCCCcCceEEEEecCCccc--------------ccccc-c------------------------
Confidence 01110 000 0111111111111100000 00000 0
Q ss_pred hhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccc
Q psy10448 549 AAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATW 628 (1001)
Q Consensus 549 ~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1001)
..... .....+..++..++ ..+.
T Consensus 250 ----~~~r~--------~~~~~~~~~l~~l~----~~~~----------------------------------------- 272 (742)
T TIGR03817 250 ----APVRR--------SASAEAADLLADLV----AEGA----------------------------------------- 272 (742)
T ss_pred ----ccccc--------chHHHHHHHHHHHH----HCCC-----------------------------------------
Confidence 00000 00111223333333 2233
Q ss_pred ccccccCCCCceeEEEeccHHHHHHHHHHHhhC--------CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccc
Q psy10448 629 EDENEDIPGLKESIEFYNMTKMLDILEDYLDGE--------GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRS 700 (1001)
Q Consensus 629 ~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~--------gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStra 700 (1001)
++|||++.....+.|...|... +.++..++|+++.++|.++.++|.++.. .+|+||++
T Consensus 273 -----------~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i---~vLVaTd~ 338 (742)
T TIGR03817 273 -----------RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGEL---LGVATTNA 338 (742)
T ss_pred -----------CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCc---eEEEECch
Confidence 4459999999999999888753 5677889999999999999999998655 48999999
Q ss_pred cccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 701 GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 701 gg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
++.|||+...|+||+||.|-+...|+||+||++|.|+.+.
T Consensus 339 lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ 378 (742)
T TIGR03817 339 LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL 378 (742)
T ss_pred HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE
Confidence 9999999999999999999999999999999999997654
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.84 E-value=1e-19 Score=231.71 Aligned_cols=301 Identities=18% Similarity=0.219 Sum_probs=195.6
Q ss_pred CCCcccHHHHHHHHHHHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWA 321 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~ 321 (1001)
..+++.+.|.+++.-+....... .+.+++.+||+|||.+++..+...... ...+||+||.. |..|..+.|.+++
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 45679999999998776554333 568999999999999887544333332 34599999955 5588888888766
Q ss_pred CC--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc
Q psy10448 322 PD--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 322 p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l 399 (1001)
.. ..+.+++|........... .. ......+|+|+|++.+.... .-.+..+|||||+|++
T Consensus 674 ~~~~v~i~~l~g~~s~~e~~~il----~~------------l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 674 ANWPVRIEMLSRFRSAKEQTQIL----AE------------AAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEHRF 734 (1147)
T ss_pred ccCCceEEEEECCCCHHHHHHHH----HH------------HHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechhhc
Confidence 44 4555555543322111000 00 11235689999998775432 1235689999999998
Q ss_pred CCcccHHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeee
Q psy10448 400 KSNQSKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRR 478 (1001)
Q Consensus 400 KN~~Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR 478 (1001)
.. .....++.+. ....+++||||++..+.-. +.++ ..+.++.
T Consensus 735 G~---~~~e~lk~l~~~~qvLl~SATpiprtl~l~---~~gl------------------------------~d~~~I~- 777 (1147)
T PRK10689 735 GV---RHKERIKAMRADVDILTLTATPIPRTLNMA---MSGM------------------------------RDLSIIA- 777 (1147)
T ss_pred ch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHHH---HhhC------------------------------CCcEEEe-
Confidence 42 2334455553 4578999999976542210 0010 0111111
Q ss_pred eHhHHhhcCCCceE---EEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 479 LKADVLKNMPSKSE---FIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 479 ~K~dv~~~LP~k~e---~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
.|+... ..+.......
T Consensus 778 --------~~p~~r~~v~~~~~~~~~~----------------------------------------------------- 796 (1147)
T PRK10689 778 --------TPPARRLAVKTFVREYDSL----------------------------------------------------- 796 (1147)
T ss_pred --------cCCCCCCCceEEEEecCcH-----------------------------------------------------
Confidence 111100 0000000000
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
.....++..+. .++.
T Consensus 797 -----------------~~k~~il~el~-r~gq----------------------------------------------- 811 (1147)
T PRK10689 797 -----------------VVREAILREIL-RGGQ----------------------------------------------- 811 (1147)
T ss_pred -----------------HHHHHHHHHHh-cCCe-----------------------------------------------
Confidence 00111122222 1233
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhC--CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGE--GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
++||++....++.+.+.|... ++++..+||+|+..+|.+++.+|.++... +|+||.+.+.|||++.+++|
T Consensus 812 -----v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~---VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 812 -----VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred -----EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEECchhhcccccccCCEE
Confidence 449999999999999999877 78999999999999999999999987665 89999999999999999999
Q ss_pred EEecCC-CCcchhhhhhhhhhhccCc
Q psy10448 714 IIYDSD-WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 714 Ii~D~~-WNP~~~iQriGRi~RiGq~ 738 (1001)
|+.+++ ++..++.|++||++|.|..
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~ 909 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQ 909 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCc
Confidence 998876 6777889999998888754
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.84 E-value=3e-19 Score=224.98 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=98.6
Q ss_pred eeEEEeccHHHHHHHHHHHhhC------CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGE------GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~------gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
++||||+....++.+...|... +..+..+||+++.++|..+.+.|+++.. .+|+||.+++.|||++.+++|
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i---~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGEL---KVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCC---eEEEECChHHhcCCCCCCcEE
Confidence 3459999999999999888763 4678889999999999999999998755 489999999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhhccC-ccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeE
Q psy10448 714 IIYDSDWNPHNDIQAFSRAHRIGQ-QNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKV 778 (1001)
Q Consensus 714 Ii~D~~WNP~~~iQriGRi~RiGq-~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V 778 (1001)
|+|++|.+...++||+||++|.+. .+. ..+|..+++ --.+.-++.+..+-|.-.++
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~g~~~~-------g~ii~~~~~--~l~e~~~~~~~~~~~~ie~~ 419 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRLGEVSK-------GRIIVVDRD--DLVECAVLLKKAREGKIDRV 419 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCCCCCCc-------EEEEEcCch--hHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998643 222 233333321 11233445566666665554
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=8.4e-19 Score=208.95 Aligned_cols=309 Identities=20% Similarity=0.287 Sum_probs=212.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc-CCCCCc-EEEEeCcc-hHHHHHHHHHHHCC-
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGP-FLVSAPLS-TIINWEREFETWAP- 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~-~~~~~p-~LIV~P~s-ll~qW~~E~~k~~p- 322 (1001)
..+.|.|..++--+. .++..|....+|+|||..-+.-+...+.. .....+ +||++|.. |..|-.+++.++..
T Consensus 50 ~~pt~IQ~~~IP~~l----~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLIL----AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 368899999997665 77899999999999998866555544442 222222 89999955 55778888887764
Q ss_pred --CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccc
Q psy10448 323 --DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 323 --~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~ 398 (1001)
.+.+..++|........... ....+|||.|+..+..... .+......++|+|||.+
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l--------------------~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL--------------------KRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH--------------------hcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 56667777765444333211 1137899999999986543 34455677999999999
Q ss_pred cCCcc--cHHHHHHhcccc-cceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhc-CCe
Q psy10448 399 LKSNQ--SKFFKFLSGYSI-QNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLL-GPH 474 (1001)
Q Consensus 399 lKN~~--Sk~~~al~~l~~-~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL-~~~ 474 (1001)
+-+.. ..+...+..+.. ...++.|||--. .+.++.. ..+ .|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~~---------------------------------~~l~~p~ 231 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRELAR---------------------------------RYLNDPV 231 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHHH---------------------------------HHccCCc
Confidence 97653 345555555554 556889999632 2222110 111 122
Q ss_pred eeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCC
Q psy10448 475 MLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAP 554 (1001)
Q Consensus 475 ~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~ 554 (1001)
.+...........+......+.|+-.
T Consensus 232 ~i~v~~~~~~~~~~~i~q~~~~v~~~------------------------------------------------------ 257 (513)
T COG0513 232 EIEVSVEKLERTLKKIKQFYLEVESE------------------------------------------------------ 257 (513)
T ss_pred EEEEccccccccccCceEEEEEeCCH------------------------------------------------------
Confidence 22221111100111111111211100
Q ss_pred cCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccccccc
Q psy10448 555 VQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENED 634 (1001)
Q Consensus 555 ~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1001)
..|+.+|..++....
T Consensus 258 --------------~~k~~~L~~ll~~~~--------------------------------------------------- 272 (513)
T COG0513 258 --------------EEKLELLLKLLKDED--------------------------------------------------- 272 (513)
T ss_pred --------------HHHHHHHHHHHhcCC---------------------------------------------------
Confidence 135555555543221
Q ss_pred CCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEE
Q psy10448 635 IPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVI 714 (1001)
Q Consensus 635 ~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VI 714 (1001)
..++|||+.....++.|...|...|+++..|||++++++|.++++.|+++... +|++|++++.|||++..++||
T Consensus 273 ---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~---vLVaTDvaaRGiDi~~v~~Vi 346 (513)
T COG0513 273 ---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR---VLVATDVAARGLDIPDVSHVI 346 (513)
T ss_pred ---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEEechhhccCCccccceeE
Confidence 11467999999999999999999999999999999999999999999976655 899999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhhccCc
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
+||.|.++..|++|+||.+|.|..
T Consensus 347 nyD~p~~~e~yvHRiGRTgRaG~~ 370 (513)
T COG0513 347 NYDLPLDPEDYVHRIGRTGRAGRK 370 (513)
T ss_pred EccCCCCHHHheeccCccccCCCC
Confidence 999999999999999999998844
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.79 E-value=1.2e-17 Score=208.26 Aligned_cols=158 Identities=20% Similarity=0.115 Sum_probs=106.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC-CC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP-DF 324 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p-~~ 324 (1001)
.+|+|+|.+++.-+ +..+.+++++.++|.|||+.+...+...+.. .+.+|+|+| .+|+.|+.++|.++.+ +.
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 36999999999642 3478899999999999999987655544432 345999999 7788999999988753 56
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..+.|+..... ......+|+|+|++.+...... ..-....+|||||+|.+.+.
T Consensus 96 ~v~~~tGd~~~~~-----------------------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~ 152 (737)
T PRK02362 96 RVGISTGDYDSRD-----------------------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSA 152 (737)
T ss_pred EEEEEeCCcCccc-----------------------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCC
Confidence 7777877643211 1123468999999988654321 00123589999999999653
Q ss_pred c-cHHHH-HH---hcc-cccceEeeecCCCCCCHHHHHH
Q psy10448 403 Q-SKFFK-FL---SGY-SIQNKLLLTGTPLQNNLEELFH 435 (1001)
Q Consensus 403 ~-Sk~~~-al---~~l-~~~~rllLTGTPlqN~l~EL~~ 435 (1001)
. ..... .+ +.+ ...+.++||||.- |..++..
T Consensus 153 ~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~ 189 (737)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD 189 (737)
T ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH
Confidence 2 22222 22 222 3346799999973 4555543
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.77 E-value=5.6e-17 Score=186.17 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=88.1
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCC--eEEEEEccCCHHHHHHH----HHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGY--KYERIDGNITGSMRQES----IDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi--~~~ridG~~s~~eRq~~----Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
.++|||++....++.+...|...+. .+..++|.++..+|.+. ++.|.++.. .+|+||.+.+.|||+. +++
T Consensus 223 ~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~---~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 223 GKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK---FVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC---eEEEECcchhceeccC-CCE
Confidence 3556999999999999999988776 48999999999999764 889987543 4899999999999994 899
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCC
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWN 758 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WN 758 (1001)
||+++.+ +..++||+||++|.|.... .+..|+++++.|+
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~-----~~~~~~v~~~~~~ 337 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNG-----ENFEVYIITIAPE 337 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCC-----CCCeEEEEeecCC
Confidence 9998776 7889999999999996532 2235566655443
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.77 E-value=3.9e-17 Score=202.21 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=104.7
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC-
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP- 322 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p- 322 (1001)
.+++|+|+|.+++.-+. .+.+++++.+||.|||+++...+...+..+ +.+++|+| .+++.|+.+++.++..
T Consensus 19 ~~~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raLa~q~~~~~~~l~~~ 91 (674)
T PRK01172 19 NDFELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSLAMEKYEELSRLRSL 91 (674)
T ss_pred CCCCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHHHHHHHHHHHHHhhc
Confidence 35679999999997653 778999999999999999876665554432 45899999 6788999999987642
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccC
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lK 400 (1001)
+..+....|+..... ......+|+|+|++.+...... ..-.++.+|||||+|.+.
T Consensus 92 g~~v~~~~G~~~~~~-----------------------~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 92 GMRVKISIGDYDDPP-----------------------DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred CCeEEEEeCCCCCCh-----------------------hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 456666666532210 1122468999999977543221 111246799999999986
Q ss_pred Ccc-cHHHHH----Hhccc-ccceEeeecCCCCCCHHHHH
Q psy10448 401 SNQ-SKFFKF----LSGYS-IQNKLLLTGTPLQNNLEELF 434 (1001)
Q Consensus 401 N~~-Sk~~~a----l~~l~-~~~rllLTGTPlqN~l~EL~ 434 (1001)
+.. ...... ++.+. ..+.++||||+- |..++.
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la 186 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA 186 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH
Confidence 432 222222 22222 345699999973 345543
No 56
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.77 E-value=1.3e-16 Score=195.61 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=107.1
Q ss_pred CCcccHHHHHHHHHHHHhhcC------CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQ------NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFE 318 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~------~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~ 318 (1001)
....++||..+|+-+...... .++|++.+.+|+|||++++.++..++.... ...+||||| ..|..||.++|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-NPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-CCeEEEEECcHHHHHHHHHHHH
Confidence 455899999999988777544 458999999999999999999988875443 345899999 678899999999
Q ss_pred HHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-hhcC----CceeEEEE
Q psy10448 319 TWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-LLGS----IEWAVLVV 393 (1001)
Q Consensus 319 k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-~L~~----~~w~~VIi 393 (1001)
.+.+.... -.++ ...+... .......|+|||.+++.+... .+.. ....+||+
T Consensus 315 ~~~~~~~~--~~~s---~~~L~~~------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIv 371 (667)
T TIGR00348 315 SLQKDCAE--RIES---IAELKRL------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIF 371 (667)
T ss_pred hhCCCCCc--ccCC---HHHHHHH------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEE
Confidence 98753110 0111 1111100 011235699999999986322 1111 12238999
Q ss_pred cCccccCCcccHHHHHHh-cccccceEeeecCCCCC
Q psy10448 394 DEAHRLKSNQSKFFKFLS-GYSIQNKLLLTGTPLQN 428 (1001)
Q Consensus 394 DEAH~lKN~~Sk~~~al~-~l~~~~rllLTGTPlqN 428 (1001)
|||||.. .....+.++ .++..++++|||||+..
T Consensus 372 DEaHrs~--~~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 372 DEAHRSQ--YGELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred EcCcccc--chHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 9999853 233444553 56778999999999854
No 57
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.77 E-value=1.3e-17 Score=194.50 Aligned_cols=314 Identities=17% Similarity=0.258 Sum_probs=206.7
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHH
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETW 320 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~ 320 (1001)
.+.++|...|..+++-+..-..... +-+|--|+|+|||+.|+..+......+.. +.+.+|+.++ .|-...+.+|
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q---~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQ---AALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCe---eEEeccHHHHHHHHHHHHHHH
Confidence 3567899999999987765554433 46888999999999999888888777643 6788998876 7888999999
Q ss_pred CC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccc
Q psy10448 321 AP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 321 ~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~ 398 (1001)
++ ++.|....|+-.........+ .-.....++||-|+..+.....+ .+..+||+||-||
T Consensus 335 l~~~~i~V~lLtG~~kgk~r~~~l~----------------~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHR 395 (677)
T COG1200 335 LEPLGIRVALLTGSLKGKARKEILE----------------QLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHR 395 (677)
T ss_pred hhhcCCeEEEeecccchhHHHHHHH----------------HHhCCCCCEEEEcchhhhcceee---cceeEEEEecccc
Confidence 96 466677777643332211110 02334678999999998765543 2457999999999
Q ss_pred cCCcccHHHHHHhcc-c-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeee
Q psy10448 399 LKSNQSKFFKFLSGY-S-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHML 476 (1001)
Q Consensus 399 lKN~~Sk~~~al~~l-~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~l 476 (1001)
+. ......|+.- . .++.|.||||||+..+.= ..|+++
T Consensus 396 FG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--------------------t~fgDl------------------ 434 (677)
T COG1200 396 FG---VHQRLALREKGEQNPHVLVMTATPIPRTLAL--------------------TAFGDL------------------ 434 (677)
T ss_pred cc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHHH--------------------HHhccc------------------
Confidence 84 3344444443 3 589999999999876531 111211
Q ss_pred eeeHhHHhhcCCCce-EEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 477 RRLKADVLKNMPSKS-EFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 477 RR~K~dv~~~LP~k~-e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
.-.+++.+|+.. ...-.+-....-.++|+.+..... . +.+
T Consensus 435 ---dvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~----~---GrQ----------------------------- 475 (677)
T COG1200 435 ---DVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA----K---GRQ----------------------------- 475 (677)
T ss_pred ---cchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH----c---CCE-----------------------------
Confidence 113455788863 332222222333345554432211 0 000
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
.|....++..|.|+.+-
T Consensus 476 ---aY~VcPLIeESE~l~l~------------------------------------------------------------ 492 (677)
T COG1200 476 ---AYVVCPLIEESEKLELQ------------------------------------------------------------ 492 (677)
T ss_pred ---EEEEeccccccccchhh------------------------------------------------------------
Confidence 01111222233332210
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhh--CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDG--EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~--~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
.+..+...|.. .++++..+||.|+++++++++.+|+++..+ +|+||.+..+|||++.|..+
T Consensus 493 --------------~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvM 555 (677)
T COG1200 493 --------------AAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVM 555 (677)
T ss_pred --------------hHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEE
Confidence 11122222221 266789999999999999999999997766 89999999999999999999
Q ss_pred EEecCC-CCcchhhhhhhhhhhccCcc
Q psy10448 714 IIYDSD-WNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 714 Ii~D~~-WNP~~~iQriGRi~RiGq~~ 739 (1001)
||.|.. +--+++-|-.||++|-+..+
T Consensus 556 VIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 556 VIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred EEechhhhhHHHHHHhccccCCCCcce
Confidence 999988 88888888888888866443
No 58
>KOG0345|consensus
Probab=99.76 E-value=1.7e-16 Score=175.53 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=208.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCC-C----cEEEEeCcchHHHH----HHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCK-G----PFLVSAPLSTIINW----EREFE 318 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~-~----p~LIV~P~sll~qW----~~E~~ 318 (1001)
+..|-|..++-.+. .+..+.+-..+|+|||+..+.-+.......... . -.|||+|+.-+.-. ...|.
T Consensus 28 ~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 28 KMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred ccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 46789999997776 788899999999999999887776665222111 1 26999997655333 33455
Q ss_pred HHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh----hhcCCceeEEEEc
Q psy10448 319 TWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA----LLGSIEWAVLVVD 394 (1001)
Q Consensus 319 k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~----~L~~~~w~~VIiD 394 (1001)
.+.+++++..+.|.......+... .....+|+|.|+..+..-.. .+....-.++|+|
T Consensus 104 ~~l~~l~~~l~vGG~~v~~Di~~f-------------------kee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEEDIKTF-------------------KEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred HhhhccceEEEecCccHHHHHHHH-------------------HHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 566889999999986555443221 12245799999988876543 3554567899999
Q ss_pred CccccCCc--ccHHHHHHhcccccceE-eeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhc
Q psy10448 395 EAHRLKSN--QSKFFKFLSGYSIQNKL-LLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLL 471 (1001)
Q Consensus 395 EAH~lKN~--~Sk~~~al~~l~~~~rl-lLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL 471 (1001)
||.++-.. ...+...+..+...+|- |.|||-.+. .++|. +.-|
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~-v~dL~---------------------------------raGL 210 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQE-VEDLA---------------------------------RAGL 210 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHH-HHHHH---------------------------------Hhhc
Confidence 99999643 45566677777766664 458884221 11110 0001
Q ss_pred CCeeeeeeHhHHhhcCCCceEEEEEEc-C--CHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCch
Q psy10448 472 GPHMLRRLKADVLKNMPSKSEFIVRVE-L--SPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPA 548 (1001)
Q Consensus 472 ~~~~lRR~K~dv~~~LP~k~e~~v~v~-L--s~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~ 548 (1001)
+.-+ ...|... . +|....+
T Consensus 211 RNpv----------------~V~V~~k~~~~tPS~L~~------------------------------------------ 232 (567)
T KOG0345|consen 211 RNPV----------------RVSVKEKSKSATPSSLAL------------------------------------------ 232 (567)
T ss_pred cCce----------------eeeecccccccCchhhcc------------------------------------------
Confidence 1000 0000000 0 0000000
Q ss_pred hhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccc
Q psy10448 549 AAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATW 628 (1001)
Q Consensus 549 ~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1001)
....+.+..|+..|..+|...
T Consensus 233 -------------~Y~v~~a~eK~~~lv~~L~~~---------------------------------------------- 253 (567)
T KOG0345|consen 233 -------------EYLVCEADEKLSQLVHLLNNN---------------------------------------------- 253 (567)
T ss_pred -------------eeeEecHHHHHHHHHHHHhcc----------------------------------------------
Confidence 001122344555565555431
Q ss_pred ccccccCCCCceeEEEeccHHHHHHHHHHHhhC--CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccc
Q psy10448 629 EDENEDIPGLKESIEFYNMTKMLDILEDYLDGE--GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGIN 706 (1001)
Q Consensus 629 ~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GIN 706 (1001)
..+|+|||.....+.++....|... ++....+||.++...|..++..|....+. +|+||++++.|||
T Consensus 254 --------~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~---vl~~TDVaARGlD 322 (567)
T KOG0345|consen 254 --------KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG---VLFCTDVAARGLD 322 (567)
T ss_pred --------ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc---eEEeehhhhccCC
Confidence 1257779999988888888877654 77899999999999999999999984444 8999999999999
Q ss_pred cccCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 707 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 707 L~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
++..|.||.||||-+|..+.+|.||.+|.|....
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~ 356 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGN 356 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccc
Confidence 9999999999999999999999999999997754
No 59
>KOG0350|consensus
Probab=99.76 E-value=1.6e-17 Score=184.45 Aligned_cols=98 Identities=21% Similarity=0.392 Sum_probs=87.6
Q ss_pred ceeEEEeccHHHHHHHHHHHh----hCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEE
Q psy10448 639 KESIEFYNMTKMLDILEDYLD----GEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVI 714 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~----~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VI 714 (1001)
.++|+|++.......+...|. .-.+++-.++|+.+...|.+.+.+|+.++.. +|+++++++.|||+...+.||
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VI 506 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVI 506 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEe
Confidence 466799999988877777776 3466777799999999999999999998765 899999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhhccCcc
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
+||+|-.-..|++|+||..|.||..
T Consensus 507 NYd~P~~~ktyVHR~GRTARAgq~G 531 (620)
T KOG0350|consen 507 NYDPPASDKTYVHRAGRTARAGQDG 531 (620)
T ss_pred ecCCCchhhHHHHhhcccccccCCc
Confidence 9999999999999999999999764
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.75 E-value=1.4e-16 Score=193.98 Aligned_cols=95 Identities=24% Similarity=0.424 Sum_probs=80.7
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHH-----HHHHHhcC----CC----CCcEEEEEeccccccccc
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQ-----ESIDRFNA----PG----ASQFVFLLSTRSGGLGIN 706 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq-----~~Id~Fn~----~~----~~~~v~LlStragg~GIN 706 (1001)
++|||++.+..++.|...|...++ ..++|.+++.+|. .++++|.. +. .....+||+|++++.|||
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLD 351 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVN 351 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhccc
Confidence 345999999999999999998887 8999999999999 78999976 21 111368999999999999
Q ss_pred cccCCEEEEecCCCCcchhhhhhhhhhhccCcc
Q psy10448 707 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 707 L~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
+.. ++||+++.|+ ..|+||+||++|.|...
T Consensus 352 Id~-d~VI~d~aP~--esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 352 ISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CCc-ceEEECCCCH--HHHHHHhcccCCCCCCC
Confidence 975 9999988775 68999999999998653
No 61
>KOG0328|consensus
Probab=99.75 E-value=2.6e-17 Score=171.07 Aligned_cols=304 Identities=18% Similarity=0.265 Sum_probs=208.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHH-HHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCCCC--e
Q psy10448 250 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQ-TITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAPDF--Y 325 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiq-aIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~--~ 325 (1001)
-.-|..++-.++ .++++|....-|+|||.+ +|+++..+--.. ..--+||+.|..-+ .|-..-+......+ .
T Consensus 51 S~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~-r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 51 SAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISV-RETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred hHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeeccccc-ceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 335888876655 888999999999999987 455554432221 12248999996544 55555566555444 4
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH--hhhcCCceeEEEEcCccccCC--
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV--ALLGSIEWAVLVVDEAHRLKS-- 401 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~--~~L~~~~w~~VIiDEAH~lKN-- 401 (1001)
+....|.+.....++.. ....+||.-|+..+.... ..|......++|+|||..+-|
T Consensus 126 ~hacigg~n~gedikkl--------------------d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKL--------------------DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred EEEEecCCccchhhhhh--------------------cccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh
Confidence 44555655544444322 245689999999887654 456667789999999999855
Q ss_pred cccHHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeeeH
Q psy10448 402 NQSKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLK 480 (1001)
Q Consensus 402 ~~Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K 480 (1001)
.+.+++...+.+. ....+++|||- ..|+..+.++..+++.. ++..|
T Consensus 186 fk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpvr---------------------------ilvkr-- 232 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPVR---------------------------ILVKR-- 232 (400)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCcee---------------------------EEEec--
Confidence 4578888888886 66789999995 34555555554443311 01111
Q ss_pred hHHhhcCCCceEEEEEEcCCHH-HHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCCh
Q psy10448 481 ADVLKNMPSKSEFIVRVELSPM-QKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQ 559 (1001)
Q Consensus 481 ~dv~~~LP~k~e~~v~v~Ls~~-Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~ 559 (1001)
| .+ +.+ -+++|-++-.
T Consensus 233 -d---el------------tlEgIKqf~v~ve~----------------------------------------------- 249 (400)
T KOG0328|consen 233 -D---EL------------TLEGIKQFFVAVEK----------------------------------------------- 249 (400)
T ss_pred -C---CC------------chhhhhhheeeech-----------------------------------------------
Confidence 1 01 111 0111110000
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 560 YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 560 ~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
..=|+..|..+...|. ..
T Consensus 250 --------EewKfdtLcdLYd~Lt------------------------------------------------------It 267 (400)
T KOG0328|consen 250 --------EEWKFDTLCDLYDTLT------------------------------------------------------IT 267 (400)
T ss_pred --------hhhhHhHHHHHhhhhe------------------------------------------------------hh
Confidence 0002222222221111 12
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
.+||||+..+.+|+|.+.+...++.+..+||.++.++|.+++..|+.+.+. +|++|++-+.||++|..+.||+||.|
T Consensus 268 QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEechhhccCCcceeEEEEecCCC
Confidence 456999999999999999999999999999999999999999999998775 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCcc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~~ 739 (1001)
-|+..|++|+||.+|.|.+.
T Consensus 345 ~nre~YIHRIGRSGRFGRkG 364 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKG 364 (400)
T ss_pred ccHHHHhhhhccccccCCcc
Confidence 99999999999999998553
No 62
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.3e-16 Score=186.90 Aligned_cols=301 Identities=20% Similarity=0.236 Sum_probs=207.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
..||-|.++++-+. .+.++|.-..||-||++..-.- .++. .|++|||.| .+|+..-.+.+.... ..+
T Consensus 17 ~FR~gQ~evI~~~l----~g~d~lvvmPTGgGKSlCyQiP--All~----~G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALL----SGKDTLVVMPTGGGKSLCYQIP--ALLL----EGLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHH----cCCcEEEEccCCCCcchHhhhH--HHhc----CCCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 46788999998877 7789999999999999854322 2222 568999999 788888888888764 343
Q ss_pred EEEeCC--chhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh--HhhhcCCceeEEEEcCccccCC-
Q psy10448 327 VTYVGD--KDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND--VALLGSIEWAVLVVDEAHRLKS- 401 (1001)
Q Consensus 327 v~y~g~--~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d--~~~L~~~~w~~VIiDEAH~lKN- 401 (1001)
....+. ...+..+... ......+++..++|.+.+. ...+...+..+++|||||.+-.
T Consensus 85 ~~lnS~l~~~e~~~v~~~------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 85 AYLNSTLSREERQQVLNQ------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred ehhhcccCHHHHHHHHHH------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhc
Confidence 333332 2222222111 1233578999999999875 3567788899999999999843
Q ss_pred ------cccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee
Q psy10448 402 ------NQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM 475 (1001)
Q Consensus 402 ------~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~ 475 (1001)
....+......+...-+++||||--.--..|+-..|..-.+..|.. .|
T Consensus 147 GhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~------sf-------------------- 200 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG------SF-------------------- 200 (590)
T ss_pred CCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe------cC--------------------
Confidence 3345555556666667899999975555555555554433321100 00
Q ss_pred eeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 476 LRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 476 lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
+-|.. .|+ .+.
T Consensus 201 ----------dRpNi---------------~~~---------------------------v~~----------------- 211 (590)
T COG0514 201 ----------DRPNL---------------ALK---------------------------VVE----------------- 211 (590)
T ss_pred ----------CCchh---------------hhh---------------------------hhh-----------------
Confidence 00000 000 000
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
...++..+. .+........
T Consensus 212 -----------~~~~~~q~~--fi~~~~~~~~------------------------------------------------ 230 (590)
T COG0514 212 -----------KGEPSDQLA--FLATVLPQLS------------------------------------------------ 230 (590)
T ss_pred -----------cccHHHHHH--HHHhhccccC------------------------------------------------
Confidence 000000011 1111011111
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII 715 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi 715 (1001)
.--||||......+.+...|...|++...+||+++.++|+.+-++|..++.. ++++|.|.|.|||-++...||+
T Consensus 231 ---~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH 304 (590)
T COG0514 231 ---KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK---VMVATNAFGMGIDKPDVRFVIH 304 (590)
T ss_pred ---CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEeccccCccCCCCceEEEE
Confidence 1235999999999999999999999999999999999999999999987665 8999999999999999999999
Q ss_pred ecCCCCcchhhhhhhhhhhccCccc
Q psy10448 716 YDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 716 ~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
||+|-+...|.|-+||++|.|..+.
T Consensus 305 ~~lP~s~EsYyQE~GRAGRDG~~a~ 329 (590)
T COG0514 305 YDLPGSIESYYQETGRAGRDGLPAE 329 (590)
T ss_pred ecCCCCHHHHHHHHhhccCCCCcce
Confidence 9999999999999999999997655
No 63
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.73 E-value=1.7e-16 Score=187.13 Aligned_cols=342 Identities=16% Similarity=0.178 Sum_probs=214.5
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCC-CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP 322 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~-g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p 322 (1001)
....+|.||..+++.+...+.++. .++|++.+|+|||.+||+++..|++.+..++ +|.++- .+|+.|=..+|..+.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KR-VLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKR-VLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhhe-eeEEechHHHHHHHHHHHHHhCC
Confidence 457899999999999988877655 4899999999999999999999999887766 899998 8888999999999999
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-------hhcCCceeEEEEcC
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-------LLGSIEWAVLVVDE 395 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-------~L~~~~w~~VIiDE 395 (1001)
........... .....+.|.|+||+++..... .+..-.|++|||||
T Consensus 241 ~~~~~n~i~~~---------------------------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDE 293 (875)
T COG4096 241 FGTKMNKIEDK---------------------------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDE 293 (875)
T ss_pred Cccceeeeecc---------------------------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEech
Confidence 76555443222 112256899999999987542 23444699999999
Q ss_pred ccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee
Q psy10448 396 AHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM 475 (1001)
Q Consensus 396 AH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~ 475 (1001)
|||- ..+.++.+..+=...+++|||||-..--..-|.+++ .. | +
T Consensus 294 aHRg---i~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~--g~------------------------------P-t 337 (875)
T COG4096 294 AHRG---IYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN--GE------------------------------P-T 337 (875)
T ss_pred hhhh---HHhhhHHHHHHHHHHHHhhccCcccccccccccccC--CC------------------------------c-c
Confidence 9983 223344555555566788899996522111111111 00 0 0
Q ss_pred eeeeHhH-Hhh-cCCCceEEEEEEcCCH---------HHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCC
Q psy10448 476 LRRLKAD-VLK-NMPSKSEFIVRVELSP---------MQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPY 544 (1001)
Q Consensus 476 lRR~K~d-v~~-~LP~k~e~~v~v~Ls~---------~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~ 544 (1001)
.....++ |.. .|-|.....|.+.+.- .+.+.+...+..
T Consensus 338 ~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~------------------------------- 386 (875)
T COG4096 338 YAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE------------------------------- 386 (875)
T ss_pred eeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc-------------------------------
Confidence 1111111 111 1323323333322110 111111110000
Q ss_pred CCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcC
Q psy10448 545 LFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYD 624 (1001)
Q Consensus 545 L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1001)
++..... ...+.-...-.....+.+.+..+...+.
T Consensus 387 ------dd~~~~~--~d~dr~~v~~~~~~~V~r~~~~~l~~~~------------------------------------- 421 (875)
T COG4096 387 ------DDQNFEA--RDFDRTLVIPFRTETVARELTEYLKRGA------------------------------------- 421 (875)
T ss_pred ------ccccccc--cccchhccccchHHHHHHHHHHHhcccc-------------------------------------
Confidence 0000000 0000000111122233344443333310
Q ss_pred ccccccccccCCCCceeEEEeccHHHHHHHHHHHhhC----CCe-EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecc
Q psy10448 625 KATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGE----GYK-YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTR 699 (1001)
Q Consensus 625 ~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~----gi~-~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStr 699 (1001)
.-....|+||||.....++.|...|... +.+ +..|+|... +-+..|+.|-. +...-.+.+|..
T Consensus 422 ---------~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~P~Iaitvd 489 (875)
T COG4096 422 ---------TGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKYPRIAITVD 489 (875)
T ss_pred ---------CCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCCCceEEehh
Confidence 0011358999999999999999998764 223 456788644 56778898876 222236999999
Q ss_pred ccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCc
Q psy10448 700 SGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 700 agg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
.+..|||.+.|-.+|++-.--+-..+.|.+||+=|+...
T Consensus 490 lL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~ 528 (875)
T COG4096 490 LLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPD 528 (875)
T ss_pred hhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCcc
Confidence 999999999999999999999999999999999997743
No 64
>PRK00254 ski2-like helicase; Provisional
Probab=99.72 E-value=5.3e-16 Score=193.16 Aligned_cols=157 Identities=22% Similarity=0.209 Sum_probs=106.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHH-HHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC-CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITF-LYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP-DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~-l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p-~~ 324 (1001)
+|+|+|.+++.- .+..+.++|++..+|.|||+.+... +..+... .+.+|+|+| .+++.|+.+++..|.. +.
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g~ 96 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLGL 96 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcCC
Confidence 699999999952 1237889999999999999999544 4444332 345899999 6788999998887753 46
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..++|+..... ......+|+|+|++.+...... ..-.+..+|||||+|.+...
T Consensus 97 ~v~~~~Gd~~~~~-----------------------~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 97 RVAMTTGDYDSTD-----------------------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred EEEEEeCCCCCch-----------------------hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc
Confidence 7777777543211 1123568999999988654321 00124679999999998643
Q ss_pred --ccHHHHHHhcc-cccceEeeecCCCCCCHHHHHH
Q psy10448 403 --QSKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFH 435 (1001)
Q Consensus 403 --~Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~ 435 (1001)
...+...+..+ .....++||||.- |..++..
T Consensus 154 ~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 154 DRGATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred cchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 33444444444 3456799999973 3566544
No 65
>KOG0335|consensus
Probab=99.71 E-value=3.8e-16 Score=176.92 Aligned_cols=99 Identities=22% Similarity=0.432 Sum_probs=93.5
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
++++||+.-.++++.+..+|...++++..|+|..++.+|.++++.|..+... +|++|.+++.|||++...+||+||.
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDm 414 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDM 414 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeec
Confidence 4788999999999999999999999999999999999999999999997766 8999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCccc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|-+-..|++|+||.+|.|+...
T Consensus 415 P~d~d~YvHRIGRTGR~Gn~G~ 436 (482)
T KOG0335|consen 415 PADIDDYVHRIGRTGRVGNGGR 436 (482)
T ss_pred CcchhhHHHhccccccCCCCce
Confidence 9999999999999999997643
No 66
>KOG0340|consensus
Probab=99.71 E-value=5.2e-16 Score=166.37 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=205.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHC--CCC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWA--PDF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~--p~~ 324 (1001)
+..|-|..++-.++ .|+.||=+.-+|+|||.....-+..-+.+.+..--.||+.|..-+ .|-.+.|.-.. -.+
T Consensus 29 ~pTpiQ~~cIpkIL----eGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKIL----EGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHh----cccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 46678999987766 889999999999999987555555555555554456999996544 55555565443 255
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh------hcCCceeEEEEcCccc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL------LGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~------L~~~~w~~VIiDEAH~ 398 (1001)
++.+++|..+.-..- . ....+.||||+|.+.+...... ....+..++|+|||.+
T Consensus 105 K~~vivGG~d~i~qa--~------------------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQA--A------------------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred eEEEEEccHHHhhhh--h------------------hcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 677777654321111 0 2345789999999988754321 1112356899999999
Q ss_pred cCCcccHHHHHH----hccccc-ceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCC
Q psy10448 399 LKSNQSKFFKFL----SGYSIQ-NKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGP 473 (1001)
Q Consensus 399 lKN~~Sk~~~al----~~l~~~-~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~ 473 (1001)
+-+.. ....| ..+... ..+++|||- .+++.+++..
T Consensus 165 vL~~~--f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~~------------------------------------- 204 (442)
T KOG0340|consen 165 VLAGC--FPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFGC------------------------------------- 204 (442)
T ss_pred hhccc--hhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhcC-------------------------------------
Confidence 86542 22222 223333 568888883 2222222110
Q ss_pred eeeeeeHhHHhhcCCCce--EEEEEE-cCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhh
Q psy10448 474 HMLRRLKADVLKNMPSKS--EFIVRV-ELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAA 550 (1001)
Q Consensus 474 ~~lRR~K~dv~~~LP~k~--e~~v~v-~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~ 550 (1001)
|-.. -+.+.+ +-.+.-..+|.
T Consensus 205 --------------~i~k~~a~~~e~~~~vstvetL~q------------------------------------------ 228 (442)
T KOG0340|consen 205 --------------PITKSIAFELEVIDGVSTVETLYQ------------------------------------------ 228 (442)
T ss_pred --------------CcccccceEEeccCCCCchhhhhh------------------------------------------
Confidence 0000 000000 00000001111
Q ss_pred hcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 551 EEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 551 ~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
...++...+|-..|..+|....+.+..
T Consensus 229 -----------~yI~~~~~vkdaYLv~~Lr~~~~~~~~------------------------------------------ 255 (442)
T KOG0340|consen 229 -----------GYILVSIDVKDAYLVHLLRDFENKENG------------------------------------------ 255 (442)
T ss_pred -----------heeecchhhhHHHHHHHHhhhhhccCc------------------------------------------
Confidence 011222345666777777777663221
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
-++||.|-+....+|.-.|...++.+..+|+.|++.+|-.++.+|++.... +|++|++++.|+|+++.
T Consensus 256 ---------simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~---iliaTDVAsRGLDIP~V 323 (442)
T KOG0340|consen 256 ---------SIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR---ILIATDVASRGLDIPTV 323 (442)
T ss_pred ---------eEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc---EEEEechhhcCCCCCce
Confidence 245999999999999999999999999999999999999999999986554 89999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 711 DTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 711 d~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+.||+||.|-.|..|++|+||..|.|....
T Consensus 324 ~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 324 ELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred eEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999888885443
No 67
>KOG0342|consensus
Probab=99.70 E-value=1.6e-16 Score=176.88 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=93.5
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.|+|||+....+.+.+.+.|....+++..|||..++..|..+..+|....++ +|++|++++.|+|++..+.||-||+
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~ 407 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDP 407 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCC
Confidence 4778999999999999999999999999999999999999999999998776 8999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCccc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|-+|..||+|+||.+|.|....
T Consensus 408 P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 408 PSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred CCCHHHHHHHhccccccCCCce
Confidence 9999999999999999886654
No 68
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.70 E-value=1.4e-15 Score=195.14 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=81.7
Q ss_pred eeEEEeccHHHHHHHHHHHhhCC---------------------------------CeEEEEEccCCHHHHHHHHHHhcC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEG---------------------------------YKYERIDGNITGSMRQESIDRFNA 686 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~g---------------------------------i~~~ridG~~s~~eRq~~Id~Fn~ 686 (1001)
++|||++.....+.+...|+... +.+..+||+++.++|..+.+.|++
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 45699999999998888886531 124567899999999999999998
Q ss_pred CCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhc
Q psy10448 687 PGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRI 735 (1001)
Q Consensus 687 ~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~Ri 735 (1001)
+... +|++|.+++.|||+..+|+||+|++|.+...++||+||++|.
T Consensus 326 G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 326 GELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred CCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 7654 899999999999999999999999999999999999999995
No 69
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.70 E-value=3.4e-15 Score=181.02 Aligned_cols=309 Identities=21% Similarity=0.163 Sum_probs=201.1
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHH-HHHHcC-CCC---CcEEEEeCc-chHHHHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLY-SLFKEG-HCK---GPFLVSAPL-STIINWEREFET 319 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~-~l~~~~-~~~---~p~LIV~P~-sll~qW~~E~~k 319 (1001)
...|.|.|..++.-.. .|.|+++..+||+|||..|+.-+. .+.+.+ ... --+|-|.|+ .|...-.+-+..
T Consensus 20 ~~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 4579999999987665 899999999999999999886544 455542 111 127999995 444445556666
Q ss_pred HC--CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH------hhhcCCceeEE
Q psy10448 320 WA--PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV------ALLGSIEWAVL 391 (1001)
Q Consensus 320 ~~--p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~------~~L~~~~w~~V 391 (1001)
|. -++.+-+-+|+.......+ .....+||+|||+|++.-.. ..|.. ...|
T Consensus 96 ~~~~~G~~v~vRhGDT~~~er~r--------------------~~~~PPdILiTTPEsL~lll~~~~~r~~l~~--vr~V 153 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQSEKQK--------------------MLKNPPHILITTPESLAILLNSPKFRELLRD--VRYV 153 (814)
T ss_pred HHHHcCCccceecCCCChHHhhh--------------------ccCCCCcEEEeChhHHHHHhcCHHHHHHhcC--CcEE
Confidence 64 2455556666544322211 34457899999999987543 34444 4569
Q ss_pred EEcCccccCCcc--cHHHHHHhcc---c-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHH
Q psy10448 392 VVDEAHRLKSNQ--SKFFKFLSGY---S-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVK 465 (1001)
Q Consensus 392 IiDEAH~lKN~~--Sk~~~al~~l---~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~ 465 (1001)
||||.|.+.+.+ ++++-.+..+ . --.|++||||-- +++++ ..||.+..-
T Consensus 154 IVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~~-------------------- 208 (814)
T COG1201 154 IVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFGD-------------------- 208 (814)
T ss_pred EeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCCC--------------------
Confidence 999999997644 4555444433 3 356899999952 44443 344433210
Q ss_pred HHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCC
Q psy10448 466 RLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYL 545 (1001)
Q Consensus 466 ~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L 545 (1001)
++-+-. .....+.+..|.++-...... .|
T Consensus 209 -------~~~Iv~------~~~~k~~~i~v~~p~~~~~~~-----------------------------------~~--- 237 (814)
T COG1201 209 -------PCEIVD------VSAAKKLEIKVISPVEDLIYD-----------------------------------EE--- 237 (814)
T ss_pred -------ceEEEE------cccCCcceEEEEecCCccccc-----------------------------------cc---
Confidence 000000 011111111111110000000 00
Q ss_pred CchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCc
Q psy10448 546 FPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDK 625 (1001)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1001)
-...+.+.+..+.++...
T Consensus 238 -------------------------~~~~~~~~i~~~v~~~~t------------------------------------- 255 (814)
T COG1201 238 -------------------------LWAALYERIAELVKKHRT------------------------------------- 255 (814)
T ss_pred -------------------------hhHHHHHHHHHHHhhcCc-------------------------------------
Confidence 000111222222222223
Q ss_pred cccccccccCCCCceeEEEeccHHHHHHHHHHHhhCC-CeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccc
Q psy10448 626 ATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEG-YKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLG 704 (1001)
Q Consensus 626 ~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~g-i~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~G 704 (1001)
+|||++...+.+.+...|...+ ..+..=||+.+.++|..+-++|.++.-. .++||.+...|
T Consensus 256 ---------------tLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lr---avV~TSSLELG 317 (814)
T COG1201 256 ---------------TLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELK---AVVATSSLELG 317 (814)
T ss_pred ---------------EEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCce---EEEEccchhhc
Confidence 3499999999999999999886 7888889999999999999999998754 79999999999
Q ss_pred cccccCCEEEEecCCCCcchhhhhhhhhh-hcc
Q psy10448 705 INLATADTVIIYDSDWNPHNDIQAFSRAH-RIG 736 (1001)
Q Consensus 705 INL~~Ad~VIi~D~~WNP~~~iQriGRi~-RiG 736 (1001)
||.-..|.||.|.+|-.-.++.||+||++ |+|
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~ 350 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLG 350 (814)
T ss_pred cccCCceEEEEeCCcHHHHHHhHhccccccccC
Confidence 99999999999999999999999999985 444
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.70 E-value=2.5e-16 Score=189.92 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=80.5
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccc---------cCCE
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLA---------TADT 712 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~---------~Ad~ 712 (1001)
||||......+.+...|...|+++..++|.+...+|..+...|+. + .++++|..+|.|+|+. ..++
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g--~VlIATdmAgRGtDI~l~~~v~~~GGL~v 502 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---G--AVTVATSMAGRGTDIKLGKGVAELGGLAV 502 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---C--eEEEEccccccccCCCCCccccccCCeEE
Confidence 399999999999999999999999999999998777666555544 2 3899999999999999 7799
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
||.|+++-+... +||+||++|.|....
T Consensus 503 Iit~~~ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 503 IGTERMENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred EEecCCCCcHHH-HHhhhcccCCCCcee
Confidence 999999987765 899999999987654
No 71
>KOG0333|consensus
Probab=99.70 E-value=8.4e-16 Score=171.67 Aligned_cols=334 Identities=20% Similarity=0.259 Sum_probs=206.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc--------CCCCCc-EEEEeCcchH-HHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE--------GHCKGP-FLVSAPLSTI-INWEREF 317 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~--------~~~~~p-~LIV~P~sll-~qW~~E~ 317 (1001)
.+-|-|..++--+. +++..|...|+|+|||...+--|...+.. ....|| .+|++|+.-+ .|-+.|-
T Consensus 267 eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 56788998886554 78889999999999995433322222211 222344 6889996654 6677888
Q ss_pred HHHCC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEE
Q psy10448 318 ETWAP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVV 393 (1001)
Q Consensus 318 ~k~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIi 393 (1001)
.+|+. ++.++...|....... .| .....++|+|.|+..+..-.. .|-...-..||+
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------qls~gceiviatPgrLid~Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVL 402 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------hhhccceeeecCchHHHHHHHHHHHHhccCceEec
Confidence 88763 3556665554322111 00 123467899999998876432 333345678999
Q ss_pred cCccccCCcc--cHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhc
Q psy10448 394 DEAHRLKSNQ--SKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLL 471 (1001)
Q Consensus 394 DEAH~lKN~~--Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL 471 (1001)
|||.++-... -...+.|. .-|..|- .|+ .+ ..+...++.+.+
T Consensus 403 deadrmiDmgfE~dv~~iL~-----------~mPssn~-----------k~~----td----------e~~~~~~~~~~~ 446 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILE-----------QMPSSNA-----------KPD----TD----------EKEGEERVRKNF 446 (673)
T ss_pred cchhhhhcccccHHHHHHHH-----------hCCcccc-----------CCC----cc----------chhhHHHHHhhc
Confidence 9999974322 22222222 2233221 010 00 111112222221
Q ss_pred CCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhh
Q psy10448 472 GPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAE 551 (1001)
Q Consensus 472 ~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~ 551 (1001)
..--.. .......+.|+|.-..+-+.++.+.....-...+. ++|.+-
T Consensus 447 ~~~k~y------------rqT~mftatm~p~verlar~ylr~pv~vtig~~gk----------------~~~rve----- 493 (673)
T KOG0333|consen 447 SSSKKY------------RQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK----------------PTPRVE----- 493 (673)
T ss_pred ccccce------------eEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC----------------Cccchh-----
Confidence 100000 11223445666665555555443321111000000 001000
Q ss_pred cCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccc
Q psy10448 552 EAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 631 (1001)
Q Consensus 552 ~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1001)
+ .-.++..+.|...|.++|+.. +
T Consensus 494 -----Q----~v~m~~ed~k~kkL~eil~~~---~--------------------------------------------- 516 (673)
T KOG0333|consen 494 -----Q----KVEMVSEDEKRKKLIEILESN---F--------------------------------------------- 516 (673)
T ss_pred -----e----EEEEecchHHHHHHHHHHHhC---C---------------------------------------------
Confidence 0 000122344555565555443 1
Q ss_pred cccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC
Q psy10448 632 NEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD 711 (1001)
Q Consensus 632 ~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad 711 (1001)
...+|||.+..+.+|.|.+.|.+.||+++++||+-+.++|..++..|.++..+ +|++|+++|.||+++...
T Consensus 517 ------~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVS 587 (673)
T KOG0333|consen 517 ------DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD---ILVATDVAGRGIDIPNVS 587 (673)
T ss_pred ------CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---EEEEecccccCCCCCccc
Confidence 13467999999999999999999999999999999999999999999997666 899999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+||+||..-+-..|++||||.+|.|+...
T Consensus 588 lVinydmaksieDYtHRIGRTgRAGk~Gt 616 (673)
T KOG0333|consen 588 LVINYDMAKSIEDYTHRIGRTGRAGKSGT 616 (673)
T ss_pred eeeecchhhhHHHHHHHhccccccccCce
Confidence 99999999999999999999999998765
No 72
>KOG0348|consensus
Probab=99.69 E-value=1.5e-15 Score=169.81 Aligned_cols=98 Identities=18% Similarity=0.392 Sum_probs=82.8
Q ss_pred eeEEEeccHHHHHHHHHHHhh----------------------CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEe
Q psy10448 640 ESIEFYNMTKMLDILEDYLDG----------------------EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLS 697 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~----------------------~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlS 697 (1001)
|+|||....++++.=.+.|.. .+.++.+++|+|++++|..++..|..... .+|+|
T Consensus 427 k~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~---~VLLc 503 (708)
T KOG0348|consen 427 KMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRR---AVLLC 503 (708)
T ss_pred eeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccc---eEEEe
Confidence 667887777776654444422 24569999999999999999999988655 48999
Q ss_pred ccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 698 TRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 698 tragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|++++.||||+....||-||+|..+..|++|+||..|+|-+..
T Consensus 504 TDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~ 546 (708)
T KOG0348|consen 504 TDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGE 546 (708)
T ss_pred hhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCc
Confidence 9999999999999999999999999999999999999996644
No 73
>KOG4284|consensus
Probab=99.69 E-value=6.6e-16 Score=175.36 Aligned_cols=344 Identities=18% Similarity=0.245 Sum_probs=227.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCC---CC
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAP---DF 324 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p---~~ 324 (1001)
+.+-|..++--.. .+-.-|+..--|+|||+....++..-+......--.+||+|..-+ -|-..-|.+.+| ++
T Consensus 48 ptkiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 4467888875443 444678999999999998544443332222222237999996654 566677777776 67
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH--hhhcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV--ALLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~--~~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
++.+|.|...-.... ....+.+|+|-|...+.... ..+.....+++|+|||..|-..
T Consensus 124 ~csvfIGGT~~~~d~---------------------~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t 182 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDL---------------------IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDT 182 (980)
T ss_pred ceEEEecCchhhhhh---------------------hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhch
Confidence 888888765432211 22346679999999998754 4566667899999999998654
Q ss_pred cc---HHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeee
Q psy10448 403 QS---KFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRR 478 (1001)
Q Consensus 403 ~S---k~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR 478 (1001)
.| .+...+..+. .+..+..|||--+| +. +.|.++++.-++-|
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ld---------------------------------n~Lsk~mrdp~lVr 228 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRN-LD---------------------------------NLLSKFMRDPALVR 228 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchh-HH---------------------------------HHHHHHhcccceee
Confidence 43 4445556663 45568899995322 21 23445555444444
Q ss_pred eHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCC
Q psy10448 479 LKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGG 558 (1001)
Q Consensus 479 ~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~ 558 (1001)
..++...-+.-+.++.+.|....
T Consensus 229 ~n~~d~~L~GikQyv~~~~s~nn--------------------------------------------------------- 251 (980)
T KOG4284|consen 229 FNADDVQLFGIKQYVVAKCSPNN--------------------------------------------------------- 251 (980)
T ss_pred cccCCceeechhheeeeccCCcc---------------------------------------------------------
Confidence 44332111111111111111100
Q ss_pred hhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCC
Q psy10448 559 QYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGL 638 (1001)
Q Consensus 559 ~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1001)
..-..--|+..|..++..+.-
T Consensus 252 -----sveemrlklq~L~~vf~~ipy------------------------------------------------------ 272 (980)
T KOG4284|consen 252 -----SVEEMRLKLQKLTHVFKSIPY------------------------------------------------------ 272 (980)
T ss_pred -----hHHHHHHHHHHHHHHHhhCch------------------------------------------------------
Confidence 000111244444444433221
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
...||||....-++-+..+|...|+++..|.|.|+..+|..+++.+++- ...+|+||+..+.|||-..+|.||++|+
T Consensus 273 ~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f---~~rILVsTDLtaRGIDa~~vNLVVNiD~ 349 (980)
T KOG4284|consen 273 VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF---RVRILVSTDLTARGIDADNVNLVVNIDA 349 (980)
T ss_pred HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc---eEEEEEecchhhccCCccccceEEecCC
Confidence 1234999999999999999999999999999999999999999998763 3369999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhh-hhhhcCCCCeEEEEE
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFS-RAHRIGQQNKVMIYR 782 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~-RahRiGQ~k~V~Vyr 782 (1001)
|-+-..|.+||||++|.|.+...+.|++ +- -+.|.+- -++||.++-.+.++-
T Consensus 350 p~d~eTY~HRIGRAgRFG~~G~aVT~~~-------~~-----~e~~~f~~m~~ria~~~~~~~~p 402 (980)
T KOG4284|consen 350 PADEETYFHRIGRAGRFGAHGAAVTLLE-------DE-----RELKGFTAMAYRIAVTVKRVVEP 402 (980)
T ss_pred CcchHHHHHHhhhcccccccceeEEEec-------cc-----hhhhhhHHHHHHHhhhheeeecc
Confidence 9999999999999999998865333332 22 4445532 247888776665543
No 74
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.68 E-value=4.1e-15 Score=180.25 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred eeEEEeccHHHHHHHHHHHhhC--CCeEEEEEccCCHHHHHHHHHHhc-CCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGE--GYKYERIDGNITGSMRQESIDRFN-APGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eRq~~Id~Fn-~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
++|||+.....++.+...|... ++.+..++|+++. +++.+++|. ++ ...+|+||..++.||+++.+++||.+
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~g---k~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSK---NPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccC---ceeEEeccChhhccccccCeeEEEEC
Confidence 3559999999999999999887 7999999999986 356777874 42 33699999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHH
Q psy10448 717 DSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVE 790 (1001)
Q Consensus 717 D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiE 790 (1001)
+....|.. +.| ++.+.+.+.-.|+.||++|. ++-.+|+|+++....
T Consensus 472 G~~k~p~~---------~~g----------------~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 472 GRVYVPEP---------FGG----------------KEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred CCccCCCc---------ccC----------------cccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 84433320 000 12233445555666666655 457888899887653
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.68 E-value=8.8e-15 Score=167.44 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=69.0
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCC--CeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEG--YKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~g--i~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
.|+|||++....++.+...|...| +.+..++|.++..+|.++. ...+|++|.+.+.|||+.. +.|| +
T Consensus 273 ~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi-~ 341 (357)
T TIGR03158 273 ERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI-F 341 (357)
T ss_pred CeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE-E
Confidence 356699999999999999999864 5788999999998887653 1248999999999999986 4666 6
Q ss_pred cCCCCcchhhhhhhhhh
Q psy10448 717 DSDWNPHNDIQAFSRAH 733 (1001)
Q Consensus 717 D~~WNP~~~iQriGRi~ 733 (1001)
+ +-++..|+||+||++
T Consensus 342 ~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred C-CCCHHHHhhhcccCC
Confidence 6 678889999999974
No 76
>KOG0338|consensus
Probab=99.68 E-value=4.3e-16 Score=173.23 Aligned_cols=94 Identities=24% Similarity=0.346 Sum_probs=89.1
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
.+|||.+....+..|.-.|-..|+++..+||+.++.+|-..+..|.+...+ +|++|++++.||++....+||+|+.|
T Consensus 428 ~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 428 RTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred ceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC---EEEEechhhccCCccceeEEEeccCc
Confidence 456999999999999999999999999999999999999999999997666 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhcc
Q psy10448 720 WNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiG 736 (1001)
-+-..|++|+||..|.|
T Consensus 505 ~t~e~Y~HRVGRTARAG 521 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAG 521 (691)
T ss_pred hhHHHHHHHhhhhhhcc
Confidence 99999999999999988
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.67 E-value=1e-14 Score=186.68 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=91.2
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD 323 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~ 323 (1001)
.|..++++|..++..+. .+.++++..+||+|||..++..+..+... ...+||||| ..|+.||.+.+.+++..
T Consensus 77 ~G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~l~~~---g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLYLAKK---GKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 46789999999886665 77889999999999996544433333221 345899999 56779999999998753
Q ss_pred C--eEEEEeCCch----hhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcc
Q psy10448 324 F--YVVTYVGDKD----CRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 324 ~--~vv~y~g~~~----~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH 397 (1001)
. .+.+..|... .+...... .....++|+|+|++.+.+....+....+++|||||||
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~------------------l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD 211 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLER------------------LKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVD 211 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHH------------------HhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChH
Confidence 3 3333333221 11110000 0123578999999999988776766679999999999
Q ss_pred ccC
Q psy10448 398 RLK 400 (1001)
Q Consensus 398 ~lK 400 (1001)
++-
T Consensus 212 ~~L 214 (1176)
T PRK09401 212 AVL 214 (1176)
T ss_pred Hhh
Confidence 974
No 78
>KOG0343|consensus
Probab=99.67 E-value=8.3e-15 Score=164.43 Aligned_cols=310 Identities=20% Similarity=0.284 Sum_probs=203.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCCC--C-cEEEEeCcc-hHHHHHHHHHHHC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTIT-FLYSLFKEGHCK--G-PFLVSAPLS-TIINWEREFETWA 321 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa-~l~~l~~~~~~~--~-p~LIV~P~s-ll~qW~~E~~k~~ 321 (1001)
..+..-|..++-..+ +|..+|=|.-+|+|||+..+. ++..|+...... | -+|||.|.. |..|--.-+.+-.
T Consensus 90 v~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 467788999987655 777788899999999987654 444555442211 1 279999965 4456555555433
Q ss_pred --CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh---hhcCCceeEEEEcCc
Q psy10448 322 --PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA---LLGSIEWAVLVVDEA 396 (1001)
Q Consensus 322 --p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~---~L~~~~w~~VIiDEA 396 (1001)
.++..-...|..+..... ......+|+|||+..+..... .|...+..++|+|||
T Consensus 166 k~h~fSaGLiiGG~~~k~E~---------------------eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFEL---------------------ERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred hccccccceeecCchhHHHH---------------------HhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 244454555554432211 234567899999999988764 456667889999999
Q ss_pred cccCCcc--cHHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCC
Q psy10448 397 HRLKSNQ--SKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGP 473 (1001)
Q Consensus 397 H~lKN~~--Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~ 473 (1001)
.++-..+ ..+-..+..+. ....||.|||+.. +..+|.-| ++-+|..
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~-svkdLaRL-sL~dP~~----------------------------- 273 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTK-SVKDLARL-SLKDPVY----------------------------- 273 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccch-hHHHHHHh-hcCCCcE-----------------------------
Confidence 9986433 23333344453 4456999999953 34443221 1112211
Q ss_pred eeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcC
Q psy10448 474 HMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEA 553 (1001)
Q Consensus 474 ~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~ 553 (1001)
+--.-.. +.-+|.+. +|. |++
T Consensus 274 --vsvhe~a--------------~~atP~~L--------------------------------~Q~----y~~------- 294 (758)
T KOG0343|consen 274 --VSVHENA--------------VAATPSNL--------------------------------QQS----YVI------- 294 (758)
T ss_pred --EEEeccc--------------cccChhhh--------------------------------hhe----EEE-------
Confidence 0000000 00011110 000 000
Q ss_pred CcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 554 PVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 554 ~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
+....|+..|-.++....
T Consensus 295 ------------v~l~~Ki~~L~sFI~shl-------------------------------------------------- 312 (758)
T KOG0343|consen 295 ------------VPLEDKIDMLWSFIKSHL-------------------------------------------------- 312 (758)
T ss_pred ------------EehhhHHHHHHHHHHhcc--------------------------------------------------
Confidence 011224444444443211
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhC--CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGE--GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD 711 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad 711 (1001)
..|+|||......+..+...+... |++...++|.+++..|-.+.++|..... ++|.||++++.|+++++.|
T Consensus 313 ----k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~---~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 313 ----KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA---VVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred ----ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc---eEEEeehhhhccCCCcccc
Confidence 146779999999999998888765 9999999999999999999999987433 6999999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
.||-+|.|-+-..||+|+||..|.+....
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~ 414 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGE 414 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCc
Confidence 99999999999999999999999886654
No 79
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=4.5e-16 Score=160.31 Aligned_cols=161 Identities=27% Similarity=0.409 Sum_probs=110.2
Q ss_pred CcccHHHHHHHHHHHHhhcCC---CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQN---IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~---~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 322 (1001)
.+|+|||.+++.-+...+... ..++|..+||+|||++++.++..+.. ++||+||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 479999999998887776654 78999999999999999998888865 69999995 888999999988876
Q ss_pred CCeEEEEeCCc---hhhhhh-hccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh-------------hcC
Q psy10448 323 DFYVVTYVGDK---DCRIVL-RDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL-------------LGS 385 (1001)
Q Consensus 323 ~~~vv~y~g~~---~~r~~i-~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~-------------L~~ 385 (1001)
........... ...... ......+ .........++++++++.+...... ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISD-----------KSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEH-----------HHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhhhccccccccccccccccccccccc-----------ccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 55444322110 000000 0000000 0002344678999999999876432 223
Q ss_pred CceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCC
Q psy10448 386 IEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPL 426 (1001)
Q Consensus 386 ~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPl 426 (1001)
..+++||+||||++.+... ++.+......++++|||||.
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 4688999999999864432 66665688889999999995
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=9.5e-15 Score=174.54 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=80.7
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccc---cCC-----
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLA---TAD----- 711 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~---~Ad----- 711 (1001)
.+|||++.....+.|...|...|+++..++|... +|+..+..|..... .++|+|..+|.|+|+. .+.
T Consensus 475 pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g---~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 475 PVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG---RITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC---cEEEEccchhcccCcCCccchhhcCCC
Confidence 3459999999999999999999999999999854 56666666654333 3899999999999998 444
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+||+||.|-|...+.||+||++|.|....
T Consensus 550 hVI~~d~P~s~r~y~hr~GRTGRqG~~G~ 578 (656)
T PRK12898 550 HVILTERHDSARIDRQLAGRCGRQGDPGS 578 (656)
T ss_pred EEEEcCCCCCHHHHHHhcccccCCCCCeE
Confidence 99999999999989999999999886543
No 81
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=6.9e-15 Score=179.24 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=83.7
Q ss_pred eEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccc---ccCC-----E
Q psy10448 641 SIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINL---ATAD-----T 712 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL---~~Ad-----~ 712 (1001)
+||||......+.|...|...|+++..++|.+...++..+...|.. + .++++|..+|.|+|+ +.+. +
T Consensus 431 vLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 431 VLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEccchhcCcCCCcccccccccCcE
Confidence 3499999999999999999999999999999888777766666653 2 389999999999999 5777 9
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
||+||.|-|+..+.||+||++|.|....
T Consensus 506 VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 506 VIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred EEeccCCCCHHHHHHhhccccCCCCCee
Confidence 9999999999999999999999997754
No 82
>KOG0326|consensus
Probab=99.65 E-value=3.7e-16 Score=164.91 Aligned_cols=310 Identities=20% Similarity=0.207 Sum_probs=204.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHHCCCC
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETWAPDF 324 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~~p~~ 324 (1001)
+-|.|.+++--.+ .++..+.-.--|+|||-.-+.-+..........--.+|+||..-+ +|-+.++.++. +.
T Consensus 108 PSPiQeesIPiaL----tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIAL----TGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCCccccccceee----cchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 4455666664322 344444455789999976554444433333223346999995433 67888999988 47
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+.+-.|....+..+- ......|++|.|+..+..... .-.-.+-.++|+|||..+-+.
T Consensus 183 ~vmvttGGT~lrDDI~--------------------Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIM--------------------RLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred EEEEecCCccccccee--------------------eecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch
Confidence 7777777665554332 123457899999998876432 111224568999999998654
Q ss_pred c--cHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeee
Q psy10448 403 Q--SKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRL 479 (1001)
Q Consensus 403 ~--Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~ 479 (1001)
. ....+.+.-+ +.+..++.|||- .. ....|...|-. .|+.+--+
T Consensus 243 ~F~~~~e~li~~lP~~rQillySATF-P~------------------tVk~Fm~~~l~--------------kPy~INLM 289 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKERQILLYSATF-PL------------------TVKGFMDRHLK--------------KPYEINLM 289 (459)
T ss_pred hhhhHHHHHHHhCCccceeeEEeccc-ch------------------hHHHHHHHhcc--------------Ccceeehh
Confidence 3 2333444444 344457778882 00 22333333211 12211110
Q ss_pred HhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCCh
Q psy10448 480 KADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQ 559 (1001)
Q Consensus 480 K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~ 559 (1001)
. +|+..--
T Consensus 290 ~-----------------eLtl~Gv------------------------------------------------------- 297 (459)
T KOG0326|consen 290 E-----------------ELTLKGV------------------------------------------------------- 297 (459)
T ss_pred h-----------------hhhhcch-------------------------------------------------------
Confidence 0 1110000
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 560 YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 560 ~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
.....++..+.|+..|..++.++.- .
T Consensus 298 tQyYafV~e~qKvhCLntLfskLqI------------------------------------------------------N 323 (459)
T KOG0326|consen 298 TQYYAFVEERQKVHCLNTLFSKLQI------------------------------------------------------N 323 (459)
T ss_pred hhheeeechhhhhhhHHHHHHHhcc------------------------------------------------------c
Confidence 0011223445566677777766542 2
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
.+||||+++..+++|...+...||.+..++..|..+.|..+...|.++.-. .|++|+..-.||+.|+.|.||+||.|
T Consensus 324 QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~cr---nLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCR---NLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccc---eeeehhhhhcccccceeeEEEecCCC
Confidence 456999999999999999999999999999999999999999999986543 79999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCcccccccc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQNKYINLA 745 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~~~~LNL~ 745 (1001)
-|+..|.+|+||.+|.|--.-.+||+
T Consensus 401 k~aEtYLHRIGRsGRFGhlGlAInLi 426 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLGLAINLI 426 (459)
T ss_pred CCHHHHHHHccCCccCCCcceEEEEE
Confidence 99999999999999999665444443
No 83
>PRK14701 reverse gyrase; Provisional
Probab=99.64 E-value=5.5e-14 Score=183.66 Aligned_cols=148 Identities=17% Similarity=0.262 Sum_probs=109.1
Q ss_pred eEEEeccHHH---HHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEec----ccccccccccc-CCE
Q psy10448 641 SIEFYNMTKM---LDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLST----RSGGLGINLAT-ADT 712 (1001)
Q Consensus 641 vIIFsq~~~~---ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlSt----ragg~GINL~~-Ad~ 712 (1001)
.|||++.... ++.|..+|...|+++..++|. |..++++|.++... +|++| ..++.|||++. ...
T Consensus 333 gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vry 404 (1638)
T PRK14701 333 GLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATYYGTLVRGLDLPERIRF 404 (1638)
T ss_pred eEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCCCCeeEecCccCCccCE
Confidence 3499987654 589999999999999999994 89999999998776 78888 47899999998 899
Q ss_pred EEEecCCC---Ccchhhhh-------------hhhhhhccCcccc------------------------------ccccc
Q psy10448 713 VIIYDSDW---NPHNDIQA-------------FSRAHRIGQQNKY------------------------------INLAT 746 (1001)
Q Consensus 713 VIi~D~~W---NP~~~iQr-------------iGRi~RiGq~~~~------------------------------LNL~~ 746 (1001)
|||||.|- |...+.|. +||++|-|...++ +.|..
T Consensus 405 vi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 484 (1638)
T PRK14701 405 AVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKDEEVIKKVAERPFVSLKK 484 (1638)
T ss_pred EEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhccHHHHHHhhcccceEEEE
Confidence 99999998 55544444 5999999976443 12211
Q ss_pred cce-eEeecCCCCCcchhhHhhhhhhc---CCCCeEEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy10448 747 ADT-VIIYDSDWNPHNDIQAFSRAHRI---GQQNKVMIYRFVTRNSVEERVTQVAKRKMML 803 (1001)
Q Consensus 747 A~~-Vil~Dp~WNP~~d~QA~~RahRi---GQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l 803 (1001)
-.- .+++=|+- ...+||-||.-|+ |=+|-..|. +.. +++++..+.+|+.+
T Consensus 485 ~~~~~~~~~pd~--~tyiqasgrtsrl~~gg~tkgls~~--~~d---~~~~~~~l~~~~~~ 538 (1638)
T PRK14701 485 EEGKYYIEIPDV--RTYIQASGRTSRLFAGGITKGASVL--IVD---DPEIFNALIRQMRF 538 (1638)
T ss_pred eCCeEEEEecCc--ccceeccchhhhccCCCcCCceEEE--Eec---CHHHHHHHHHHHhh
Confidence 111 12222332 2788999998776 667777763 332 36789999998885
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.62 E-value=2.8e-15 Score=179.84 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=84.9
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc-------CCEEEE
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT-------ADTVII 715 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~-------Ad~VIi 715 (1001)
|||......+.|...|...|+++..++|. ..+|++.|..|..... .++|+|..+|.|+|+.. .-+||.
T Consensus 410 V~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATnmAgRGtDI~l~~V~~~GGl~VI~ 484 (745)
T TIGR00963 410 VGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATNMAGRGTDIKLEEVKELGGLYVIG 484 (745)
T ss_pred EEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEeccccCCcCCCccchhhcCCcEEEe
Confidence 99999999999999999999999999998 6789999999976544 48999999999999988 569999
Q ss_pred ecCCCCcchhhhhhhhhhhccCccc
Q psy10448 716 YDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 716 ~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
++.|-|+..+.|++||++|.|....
T Consensus 485 t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 485 TERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred cCCCCcHHHHHHHhccccCCCCCcc
Confidence 9999999999999999999997764
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.62 E-value=1.8e-14 Score=177.19 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=103.6
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDF 324 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~ 324 (1001)
...|.++|.++++.+...+ .+..++|...+|.|||...+..+...+..+ +.+||++| ..++.|+.+.|.++++ .
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~fg-~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARFG-A 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-C
Confidence 4579999999998886543 345689999999999999988777666543 35899999 5688999999998774 5
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCC--c
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKS--N 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN--~ 402 (1001)
.+.+++|.......... |.. ......+|||+|...+. +.-.+..+|||||+|...- .
T Consensus 217 ~v~~~~s~~s~~~r~~~----~~~------------~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~ 275 (679)
T PRK05580 217 PVAVLHSGLSDGERLDE----WRK------------AKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQ 275 (679)
T ss_pred CEEEEECCCCHHHHHHH----HHH------------HHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccC
Confidence 67777775433222111 100 11224679999987663 2223568999999998632 1
Q ss_pred ccHHH--H---HHh-cccccceEeeecCCC
Q psy10448 403 QSKFF--K---FLS-GYSIQNKLLLTGTPL 426 (1001)
Q Consensus 403 ~Sk~~--~---al~-~l~~~~rllLTGTPl 426 (1001)
....+ + .++ .......+++||||.
T Consensus 276 ~~p~y~~r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 276 EGPRYHARDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred cCCCCcHHHHHHHHhhccCCCEEEEcCCCC
Confidence 11111 1 111 223445788999995
No 86
>COG4889 Predicted helicase [General function prediction only]
Probab=99.61 E-value=9.9e-15 Score=170.00 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=109.5
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC-C
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA-P 322 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~-p 322 (1001)
...+|||||..+++-....+..+.+|=|-+.+|+|||++++-+...+.. ..+|.+|| .+|+.|-.+|...-. -
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l 232 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKEL 232 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCc
Confidence 3568999999999999888888888999999999999999998887754 34899999 688888666543321 1
Q ss_pred CCe-EEEEeCCchhhh--hhhccccccccccccCCC--Cc--cccCCCccccEEEecHHHHHhh--HhhhcCCceeEEEE
Q psy10448 323 DFY-VVTYVGDKDCRI--VLRDHDISWEDTANRGGK--PC--RIRSSTVKFHVLLTSYELITND--VALLGSIEWAVLVV 393 (1001)
Q Consensus 323 ~~~-vv~y~g~~~~r~--~i~~~e~~~~~~~~~~~~--~~--~~~~~~~~~dVvItTYe~l~~d--~~~L~~~~w~~VIi 393 (1001)
+++ +.+...++.+|. .+...++..+... .++ .. .-.....+.-||++||+.+..- .....--.|++||+
T Consensus 233 ~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT--~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliic 310 (1518)
T COG4889 233 DFRASAVCSDDKVSRSAEDIKASDLPIPVST--DLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIIC 310 (1518)
T ss_pred cceeEEEecCccccccccccccccCCCCCcc--cHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEe
Confidence 222 233333333332 1111111111100 000 00 0002233456999999998653 34455567999999
Q ss_pred cCccccCCc-----ccHHHHHH---hcccccceEeeecCC
Q psy10448 394 DEAHRLKSN-----QSKFFKFL---SGYSIQNKLLLTGTP 425 (1001)
Q Consensus 394 DEAH~lKN~-----~Sk~~~al---~~l~~~~rllLTGTP 425 (1001)
|||||--.. ....+..+ ..+++..|+-+||||
T Consensus 311 DEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 311 DEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred cchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 999996321 11122222 235778899999999
No 87
>KOG0347|consensus
Probab=99.60 E-value=4.4e-14 Score=158.75 Aligned_cols=151 Identities=13% Similarity=0.269 Sum_probs=131.9
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
+.++||||+..+.+..|.-+|...+++...+|.+|.+.+|-+.+++|....++ +||+|++++.|||++...|||+|-
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEee
Confidence 45789999999999999999999999999999999999999999999986664 899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhh-hhcCCCCeEEEEEEEeCCCHHHHHHHH
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRA-HRIGQQNKVMIYRFVTRNSVEERVTQV 796 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~Ra-hRiGQ~k~V~Vyrlvt~~TiEE~I~~~ 796 (1001)
.|-....|++|-||..|.+...- .|.+++| .+.+-.-+. .+.--+..+.||- |++.|+..
T Consensus 540 VPrtseiYVHRSGRTARA~~~Gv--------svml~~P-----~e~~~~~KL~ktL~k~~dlpifP------v~~~~m~~ 600 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANSEGV--------SVMLCGP-----QEVGPLKKLCKTLKKKEDLPIFP------VETDIMDA 600 (731)
T ss_pred cCCccceeEecccccccccCCCe--------EEEEeCh-----HHhHHHHHHHHHHhhccCCCcee------ccHHHHHH
Confidence 99999999999999999997654 6888888 667666664 5666666776643 48999999
Q ss_pred HHHHHHHHhHhccC
Q psy10448 797 AKRKMMLTHLVVRP 810 (1001)
Q Consensus 797 ~~~K~~l~~~vv~~ 810 (1001)
.+.+-.|++.+...
T Consensus 601 lkeRvrLA~ei~~~ 614 (731)
T KOG0347|consen 601 LKERVRLAREIDKL 614 (731)
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888876643
No 88
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.59 E-value=5.7e-14 Score=174.86 Aligned_cols=314 Identities=19% Similarity=0.180 Sum_probs=208.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC---C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA---P 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~---p 322 (1001)
..|+.||.++++.+. ++++.|+.-.||+|||...+..|...+...... .+|+|-| +.|.....+.|.+|. |
T Consensus 69 ~~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 69 ERLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred ccccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCC
Confidence 349999999998876 889999999999999999887776655555444 5899999 677788888888886 3
Q ss_pred -CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH------hhhcCCceeEEEEcC
Q psy10448 323 -DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV------ALLGSIEWAVLVVDE 395 (1001)
Q Consensus 323 -~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~------~~L~~~~w~~VIiDE 395 (1001)
...+..|.|+........ .-..+.+|++|||+++.... ......++.+|||||
T Consensus 144 ~~v~~~~y~Gdt~~~~r~~--------------------~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 144 GKVTFGRYTGDTPPEERRA--------------------IIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred CcceeeeecCCCChHHHHH--------------------HHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 466778888755433210 11346789999999997632 112223488999999
Q ss_pred ccccCCc-ccHHHHHHhccc--------ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHH
Q psy10448 396 AHRLKSN-QSKFFKFLSGYS--------IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKR 466 (1001)
Q Consensus 396 AH~lKN~-~Sk~~~al~~l~--------~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~ 466 (1001)
+|..+.. .|...-.++.+. ....++.|||- ++..+|...+....-.
T Consensus 204 lHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~----- 258 (851)
T COG1205 204 LHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE----- 258 (851)
T ss_pred ceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-----
Confidence 9998764 455554554442 33458888884 1222333322210000
Q ss_pred HHhhcCCeeeeeeHhHHhhc-CCCceEEEEEEcC-CHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCC
Q psy10448 467 LHDLLGPHMLRRLKADVLKN-MPSKSEFIVRVEL-SPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPY 544 (1001)
Q Consensus 467 L~~lL~~~~lRR~K~dv~~~-LP~k~e~~v~v~L-s~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~ 544 (1001)
. .+..+ -|.-..+.+.-.. .......
T Consensus 259 -------~-------~v~~~g~~~~~~~~~~~~p~~~~~~~~-------------------------------------- 286 (851)
T COG1205 259 -------V-------PVDEDGSPRGLRYFVRREPPIRELAES-------------------------------------- 286 (851)
T ss_pred -------e-------eccCCCCCCCceEEEEeCCcchhhhhh--------------------------------------
Confidence 0 01111 1111111111110 0000000
Q ss_pred CCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcC
Q psy10448 545 LFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYD 624 (1001)
Q Consensus 545 L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1001)
..-.+...+..+...+...+-+
T Consensus 287 ----------------------~r~s~~~~~~~~~~~~~~~~~~------------------------------------ 308 (851)
T COG1205 287 ----------------------IRRSALAELATLAALLVRNGIQ------------------------------------ 308 (851)
T ss_pred ----------------------cccchHHHHHHHHHHHHHcCce------------------------------------
Confidence 0012233344444455555544
Q ss_pred ccccccccccCCCCceeEEEeccHHHHHHHH----HHHhhCC----CeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEE
Q psy10448 625 KATWEDENEDIPGLKESIEFYNMTKMLDILE----DYLDGEG----YKYERIDGNITGSMRQESIDRFNAPGASQFVFLL 696 (1001)
Q Consensus 625 ~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~----~~L~~~g----i~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~Ll 696 (1001)
+|+|+.+...+..+. ..+...+ ..+..+.|++...+|..+...|+.++.. +++
T Consensus 309 ----------------tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~---~~~ 369 (851)
T COG1205 309 ----------------TLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL---GVI 369 (851)
T ss_pred ----------------EEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc---EEe
Confidence 449999999998886 4444445 5678889999999999999999997665 899
Q ss_pred eccccccccccccCCEEEEecCCC-CcchhhhhhhhhhhccCcc
Q psy10448 697 STRSGGLGINLATADTVIIYDSDW-NPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 697 Stragg~GINL~~Ad~VIi~D~~W-NP~~~iQriGRi~RiGq~~ 739 (1001)
+|.|.-.||++...+.||.+--|- .-..+.|+.||++|.+|..
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~ 413 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES 413 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc
Confidence 999999999999999999999988 7799999999999999554
No 89
>KOG0336|consensus
Probab=99.59 E-value=2.5e-14 Score=155.25 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=92.7
Q ss_pred CCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 637 GLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 637 ~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
...|+|||+....++|-|..-|...|+....+||.-.+.+|+.+++.|..+.. .+|++|+.++.||++++..||++|
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v---rILvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV---RILVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce---EEEEEechhhcCCCchhcceeecc
Confidence 44688999999999999999999999999999999999999999999988644 599999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhhccCcc
Q psy10448 717 DSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 717 D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
|.|-|-..|++|+||++|.|.+.
T Consensus 541 DFP~nIeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 541 DFPRNIEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred CCCccHHHHHHHhcccccCCCCc
Confidence 99999999999999999988553
No 90
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.58 E-value=7.2e-14 Score=171.68 Aligned_cols=160 Identities=21% Similarity=0.193 Sum_probs=114.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC-CCCe
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA-PDFY 325 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~-p~~~ 325 (1001)
+|+|.|.++|.-.. ..+.|++++..||.|||+.|..+|...+.++ .++++-||| .+|..+=.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 89999999994332 2478999999999999999998888777665 567999999 788888888888543 3789
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhc--CCceeEEEEcCccccCCc-
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLG--SIEWAVLVVDEAHRLKSN- 402 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~--~~~w~~VIiDEAH~lKN~- 402 (1001)
|.+++|+.+... ....+++|+|||||.+.+-..... ....++|||||+|.+...
T Consensus 106 V~~~TgD~~~~~-----------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 106 VGISTGDYDLDD-----------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred EEEecCCcccch-----------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 999999775432 234578899999999976433222 235689999999999765
Q ss_pred c-----cHHHHHHhcccccceEeeecCCCCCCHHHHHHhh
Q psy10448 403 Q-----SKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLL 437 (1001)
Q Consensus 403 ~-----Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL 437 (1001)
. +-..+....-..-+.++||||- .|..|+...+
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~wL 200 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVADWL 200 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHHHh
Confidence 2 2222222222224678999994 3556654433
No 91
>KOG0341|consensus
Probab=99.58 E-value=4.1e-15 Score=160.32 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=89.6
Q ss_pred eEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCC
Q psy10448 641 SIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDW 720 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~W 720 (1001)
++||+.-..-+|.|.+||-.+|+..+.|+|+..+++|..+|+.|+.+..+ +|+.|++++-|++++...|||+||.|-
T Consensus 424 VLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~ 500 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPE 500 (610)
T ss_pred eEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChH
Confidence 44999999999999999999999999999999999999999999997766 899999999999999999999999999
Q ss_pred CcchhhhhhhhhhhccCc
Q psy10448 721 NPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 721 NP~~~iQriGRi~RiGq~ 738 (1001)
.-..|++|+||.+|.|.+
T Consensus 501 eIENYVHRIGRTGRsg~~ 518 (610)
T KOG0341|consen 501 EIENYVHRIGRTGRSGKT 518 (610)
T ss_pred HHHHHHHHhcccCCCCCc
Confidence 999999999999998855
No 92
>KOG0346|consensus
Probab=99.57 E-value=2.6e-14 Score=157.01 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=87.6
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecc--------------------
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTR-------------------- 699 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStr-------------------- 699 (1001)
|+|||.+.....-.|.-+|..-|++.+.++|.++...|..+|++||.+--+ ++|.|+
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd---ivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD---IVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee---EEEEccCccchhhhhccccccccccC
Confidence 567999999999999999999999999999999999999999999986444 677776
Q ss_pred ------c---------cccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 700 ------S---------GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 700 ------a---------gg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+ .+.|||++..++||+||.|-++..||+|+||..|.|++..
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt 402 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT 402 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCc
Confidence 1 2579999999999999999999999999999999887654
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.57 E-value=3.3e-13 Score=173.25 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=92.9
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD 323 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~ 323 (1001)
.+..+.++|..++..+. .+.+.++...+|+|||..++.++..+... ...+|||+| ..|+.|+.+.+.+++..
T Consensus 75 ~g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred cCCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 45689999999987665 77889999999999998666555444332 245899999 56779999999998753
Q ss_pred C--e---EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccc
Q psy10448 324 F--Y---VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 324 ~--~---vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~ 398 (1001)
. . +..|+|...........+ . .....++|+|+|+..+......+.. .++++||||||+
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~--------------~--l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFME--------------R--IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDA 210 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHH--------------H--HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHh
Confidence 2 2 224566433221110000 0 0123478999999999887766655 799999999999
Q ss_pred cCC
Q psy10448 399 LKS 401 (1001)
Q Consensus 399 lKN 401 (1001)
+-.
T Consensus 211 ~L~ 213 (1171)
T TIGR01054 211 LLK 213 (1171)
T ss_pred hhh
Confidence 854
No 94
>KOG0332|consensus
Probab=99.57 E-value=1.3e-13 Score=149.01 Aligned_cols=97 Identities=25% Similarity=0.355 Sum_probs=86.1
Q ss_pred eEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCC
Q psy10448 641 SIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDW 720 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~W 720 (1001)
.||||+-..++..|...|...|+.+..++|.++.++|.++|++|+.+... +|++|.+.+.||+.+..+.||+||.|-
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~ 409 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPV 409 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCcc
Confidence 45999999999999999999999999999999999999999999997765 899999999999999999999999984
Q ss_pred ------CcchhhhhhhhhhhccCccc
Q psy10448 721 ------NPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 721 ------NP~~~iQriGRi~RiGq~~~ 740 (1001)
.+..|++|+||.+|.|.+.-
T Consensus 410 ~~~~~pD~etYlHRiGRtGRFGkkG~ 435 (477)
T KOG0332|consen 410 KYTGEPDYETYLHRIGRTGRFGKKGL 435 (477)
T ss_pred ccCCCCCHHHHHHHhcccccccccce
Confidence 35567777777777775543
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.55 E-value=7.1e-13 Score=163.15 Aligned_cols=299 Identities=19% Similarity=0.265 Sum_probs=196.4
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH-HHHHHHHHHC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII-NWEREFETWA 321 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~-qW~~E~~k~~ 321 (1001)
...+-.|-|+.+++-.+.-..+++ .-+||-++|-|||=+|+-.+-.....+ +-+.|+||+.++. |-.+.|..=+
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTlLA~QHy~tFkeRF 667 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTLLAQQHYETFKERF 667 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHhHHHHHHHHHHHh
Confidence 445678899999998876666655 368999999999999986554333333 3489999988874 4344454433
Q ss_pred CCCeEEEE-----eCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCc
Q psy10448 322 PDFYVVTY-----VGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEA 396 (1001)
Q Consensus 322 p~~~vv~y-----~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEA 396 (1001)
.++.|.+- .+.+..+..+.. -...+.||||-|+..+.++..+- +-.+|||||=
T Consensus 668 ~~fPV~I~~LSRF~s~kE~~~il~~-------------------la~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEE 725 (1139)
T COG1197 668 AGFPVRIEVLSRFRSAKEQKEILKG-------------------LAEGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEE 725 (1139)
T ss_pred cCCCeeEEEecccCCHHHHHHHHHH-------------------HhcCCccEEEechHhhCCCcEEe---cCCeEEEech
Confidence 34444332 122222222211 23557899999999998876532 3469999999
Q ss_pred cccCCcccHHHHHHhccccc-ceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee
Q psy10448 397 HRLKSNQSKFFKFLSGYSIQ-NKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM 475 (1001)
Q Consensus 397 H~lKN~~Sk~~~al~~l~~~-~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~ 475 (1001)
||+. -+.-..++.+++. +.|-|||||++..+.= .+. .++++
T Consensus 726 qRFG---Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~M-----sm~-------------------------GiRdl----- 767 (1139)
T COG1197 726 QRFG---VKHKEKLKELRANVDVLTLSATPIPRTLNM-----SLS-------------------------GIRDL----- 767 (1139)
T ss_pred hhcC---ccHHHHHHHHhccCcEEEeeCCCCcchHHH-----HHh-------------------------cchhh-----
Confidence 9984 3444567777554 6788999999876431 000 00000
Q ss_pred eeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 476 LRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 476 lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
.++ .-||.....|..-..+..-.+.+
T Consensus 768 ------SvI-~TPP~~R~pV~T~V~~~d~~~ir----------------------------------------------- 793 (1139)
T COG1197 768 ------SVI-ATPPEDRLPVKTFVSEYDDLLIR----------------------------------------------- 793 (1139)
T ss_pred ------hhc-cCCCCCCcceEEEEecCChHHHH-----------------------------------------------
Confidence 111 34655544444333322222222
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
..++.++...|. |-
T Consensus 794 --------------------eAI~REl~RgGQ-vf--------------------------------------------- 807 (1139)
T COG1197 794 --------------------EAILRELLRGGQ-VF--------------------------------------------- 807 (1139)
T ss_pred --------------------HHHHHHHhcCCE-EE---------------------------------------------
Confidence 123333333333 11
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhC--CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGE--GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
.-.+.+..+.-+...|... ..++...||.|+..+-.+++..|.++..+ +|+||-....|||++.|||+
T Consensus 808 -------Yv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d---VLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 808 -------YVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD---VLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred -------EEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC---EEEEeeeeecCcCCCCCceE
Confidence 2234455566666666654 56788899999999999999999997766 89999999999999999999
Q ss_pred EEecCC-CCcchhhhhhhhhhhcc
Q psy10448 714 IIYDSD-WNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 714 Ii~D~~-WNP~~~iQriGRi~RiG 736 (1001)
||-+.| +--+++-|-.||++|..
T Consensus 878 IIe~AD~fGLsQLyQLRGRVGRS~ 901 (1139)
T COG1197 878 IIERADKFGLAQLYQLRGRVGRSN 901 (1139)
T ss_pred EEeccccccHHHHHHhccccCCcc
Confidence 999988 88888889999888865
No 96
>KOG0344|consensus
Probab=99.54 E-value=1.3e-13 Score=157.50 Aligned_cols=97 Identities=23% Similarity=0.272 Sum_probs=89.8
Q ss_pred eEEEeccHHHHHHHHHHH-hhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 641 SIEFYNMTKMLDILEDYL-DGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L-~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++||.|.......|...| ...++.+..|+|..+..+|...+++|+.+.. .+|++|...+.||++..++.||+||.|
T Consensus 390 ~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I---wvLicTdll~RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI---WVLICTDLLARGIDFKGVNLVINYDFP 466 (593)
T ss_pred eEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe---eEEEehhhhhccccccCcceEEecCCC
Confidence 459999999999999999 7789999999999999999999999998644 689999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCccc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~~~ 740 (1001)
-.-..|+.|+||.+|.|+...
T Consensus 467 ~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 467 QSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred chhHHHHHHhhccCCCCCCcc
Confidence 999999999999999997654
No 97
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.54 E-value=5.3e-13 Score=165.67 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=68.6
Q ss_pred eeEEEeccHHHHHHHHHHHhh---CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 640 ESIEFYNMTKMLDILEDYLDG---EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~---~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
++|||+.....++.+...|.. .++.+..++|+++.++|+++++.|..+.. -+|+||.+++.||+++.+++||.+
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r---kVlVATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR---KVVLATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe---EEEEecchHhhcccccCceEEEEc
Confidence 355999999999999999986 47899999999999999999999976533 489999999999999999999999
Q ss_pred cCC
Q psy10448 717 DSD 719 (1001)
Q Consensus 717 D~~ 719 (1001)
+.+
T Consensus 288 Gl~ 290 (819)
T TIGR01970 288 GLA 290 (819)
T ss_pred Ccc
Confidence 876
No 98
>KOG0339|consensus
Probab=99.54 E-value=4e-13 Score=149.62 Aligned_cols=96 Identities=18% Similarity=0.339 Sum_probs=88.2
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
|+|||..-....+-|...|..+|+++..++|++.+.+|.+.|..|...... +|+.|++...|+++....|||+||.-
T Consensus 470 kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~a 546 (731)
T KOG0339|consen 470 KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFA 546 (731)
T ss_pred cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eEEEeeHhhcCCCccccceeeccccc
Confidence 456999999999999999999999999999999999999999999986655 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~ 738 (1001)
-.-..+.||+||.+|.|-+
T Consensus 547 rdIdththrigrtgRag~k 565 (731)
T KOG0339|consen 547 RDIDTHTHRIGRTGRAGEK 565 (731)
T ss_pred chhHHHHHHhhhccccccc
Confidence 9999888888888888844
No 99
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=6.9e-13 Score=157.72 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=84.8
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccccccccc
Q psy10448 272 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTA 350 (1001)
Q Consensus 272 LADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~ 350 (1001)
|.-.+|+|||.+.+.++...+..+ +.+||++| .++..|+.+.|.+.++ ..+.++++.......... |..
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~----~~~-- 71 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQA----WRK-- 71 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHH----HHH--
Confidence 556899999999988887776543 34899999 6788999999998774 456777765433222111 110
Q ss_pred ccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccC--CcccHHH------HHHhcccccceEeee
Q psy10448 351 NRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLK--SNQSKFF------KFLSGYSIQNKLLLT 422 (1001)
Q Consensus 351 ~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lK--N~~Sk~~------~al~~l~~~~rllLT 422 (1001)
......+|||+|...+.. .-.+..+|||||.|... ......+ ...........+++|
T Consensus 72 ----------~~~g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~S 136 (505)
T TIGR00595 72 ----------VKNGEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGS 136 (505)
T ss_pred ----------HHcCCCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEe
Confidence 112346799999987642 22356899999999863 2222111 112223455678999
Q ss_pred cCCC
Q psy10448 423 GTPL 426 (1001)
Q Consensus 423 GTPl 426 (1001)
|||.
T Consensus 137 ATPs 140 (505)
T TIGR00595 137 ATPS 140 (505)
T ss_pred CCCC
Confidence 9995
No 100
>PRK09694 helicase Cas3; Provisional
Probab=99.52 E-value=3.2e-12 Score=158.88 Aligned_cols=95 Identities=19% Similarity=0.125 Sum_probs=77.7
Q ss_pred eEEEeccHHHHHHHHHHHhhCC---CeEEEEEccCCHHHH----HHHHHHh-cCCCCCcEEEEEeccccccccccccCCE
Q psy10448 641 SIEFYNMTKMLDILEDYLDGEG---YKYERIDGNITGSMR----QESIDRF-NAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~~g---i~~~ridG~~s~~eR----q~~Id~F-n~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
++||++.+..+..+.+.|...+ +++..++|.++..+| +++++.| +++......+||+|.+...|||+ .+|.
T Consensus 563 vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~Dv 641 (878)
T PRK09694 563 VCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDW 641 (878)
T ss_pred EEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCe
Confidence 3499999999999999998765 679999999999999 4678899 43332213589999999999999 5798
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
+|....| ...++||+||++|-+..
T Consensus 642 lItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 642 LITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EEECCCC--HHHHHHHHhccCCCCCC
Confidence 8887665 46899999999998853
No 101
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.52 E-value=5.9e-14 Score=136.23 Aligned_cols=96 Identities=32% Similarity=0.484 Sum_probs=84.7
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||+.....++.+.+.|...+..+..++|+++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||++++
T Consensus 29 ~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~ili~t~~~~~G~d~~~~~~vi~~~~ 105 (131)
T cd00079 29 GKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI---VVLVATDVIARGIDLPNVSVVINYDL 105 (131)
T ss_pred CcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEcChhhcCcChhhCCEEEEeCC
Confidence 456699999999999999999989999999999999999999999998663 58999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccC
Q psy10448 719 DWNPHNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq 737 (1001)
+|++..++|++||++|.|+
T Consensus 106 ~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 106 PWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred CCCHHHheecccccccCCC
Confidence 9999966666665555554
No 102
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.51 E-value=1.1e-13 Score=143.10 Aligned_cols=158 Identities=29% Similarity=0.342 Sum_probs=112.7
Q ss_pred CCcccHHHHHHHHHHHHhhcCC-CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQN-IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD 323 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~-~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~ 323 (1001)
..++++||.+++..+. .. .++++..++|+|||..++.++........ .+++||++| ..+..||..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4579999999998776 44 78999999999999988888877766543 346999999 77789999999998865
Q ss_pred ---CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccc
Q psy10448 324 ---FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 324 ---~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~ 398 (1001)
.....+.+... ...... ......+++++||+.+...... +....+.++|+||||.
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~-------------------~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 140 (201)
T smart00487 81 LGLKVVGLYGGDSK-REQLRK-------------------LESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHR 140 (201)
T ss_pred CCeEEEEEeCCcch-HHHHHH-------------------HhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHH
Confidence 23333333322 111110 0111237999999999887655 4455688999999999
Q ss_pred cCC-cc-cHHHHHHhcc-cccceEeeecCCCCC
Q psy10448 399 LKS-NQ-SKFFKFLSGY-SIQNKLLLTGTPLQN 428 (1001)
Q Consensus 399 lKN-~~-Sk~~~al~~l-~~~~rllLTGTPlqN 428 (1001)
+.+ .. ......+..+ ...+++++||||..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 141 LLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 985 33 3333344444 577889999999643
No 103
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.51 E-value=1.7e-14 Score=127.78 Aligned_cols=78 Identities=38% Similarity=0.658 Sum_probs=72.8
Q ss_pred HHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhc
Q psy10448 656 DYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRI 735 (1001)
Q Consensus 656 ~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~Ri 735 (1001)
.+|...|+++..++|+++..+|+.+++.|+.+... +|++|.++++|||++.+++||+++++||+..++|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36888999999999999999999999999997764 899999999999999999999999999999999999998887
Q ss_pred c
Q psy10448 736 G 736 (1001)
Q Consensus 736 G 736 (1001)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 6
No 104
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.49 E-value=3.1e-12 Score=159.26 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=67.7
Q ss_pred eEEEeccHHHHHHHHHHHhh---CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 641 SIEFYNMTKMLDILEDYLDG---EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~---~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
+|||+.....++.+.+.|.. .++.+..++|+++.++|++++..|.++. ..+|+||..+..||++..+++||.++
T Consensus 215 iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~---rkVlvATnIAErsLtIp~V~~VID~G 291 (812)
T PRK11664 215 LLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR---RKVVLATNIAETSLTIEGIRLVVDSG 291 (812)
T ss_pred EEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC---eEEEEecchHHhcccccCceEEEECC
Confidence 45999999999999999986 5788999999999999999999997643 35999999999999999999999977
Q ss_pred CC
Q psy10448 718 SD 719 (1001)
Q Consensus 718 ~~ 719 (1001)
.+
T Consensus 292 l~ 293 (812)
T PRK11664 292 LE 293 (812)
T ss_pred Cc
Confidence 65
No 105
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.47 E-value=4.9e-13 Score=130.08 Aligned_cols=136 Identities=22% Similarity=0.271 Sum_probs=98.5
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCC-CCeEEEEeCCchhhhhhhcccccc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAP-DFYVVTYVGDKDCRIVLRDHDISW 346 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-~~~vv~y~g~~~~r~~i~~~e~~~ 346 (1001)
++++..++|+|||.+++.++..+.... ..+.++|+||...+ .+|...+..+.. ...+..+.+.........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK------ 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHH------
Confidence 689999999999999999999887763 34569999996655 556677777774 455656555443332210
Q ss_pred ccccccCCCCccccCCCccccEEEecHHHHHhhHhhh--cCCceeEEEEcCccccCCcccHHH---HHHhcccccceEee
Q psy10448 347 EDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALL--GSIEWAVLVVDEAHRLKSNQSKFF---KFLSGYSIQNKLLL 421 (1001)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L--~~~~w~~VIiDEAH~lKN~~Sk~~---~al~~l~~~~rllL 421 (1001)
......+|+++||+.+....... ....|++||+||+|.+.+...... ..........++++
T Consensus 75 --------------~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 140 (144)
T cd00046 75 --------------LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLL 140 (144)
T ss_pred --------------HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEE
Confidence 12345789999999988765432 244689999999999987765543 34445677889999
Q ss_pred ecCC
Q psy10448 422 TGTP 425 (1001)
Q Consensus 422 TGTP 425 (1001)
||||
T Consensus 141 saTp 144 (144)
T cd00046 141 SATP 144 (144)
T ss_pred eccC
Confidence 9998
No 106
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=146.84 Aligned_cols=304 Identities=18% Similarity=0.198 Sum_probs=185.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHH-HHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCC--
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTI-TFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAP-- 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaI-a~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-- 322 (1001)
.+|.|-|.-+|. ...-.+.+-++...+++|||+++= |-+..++.. .+.+|.+||+--+ .|=.++|..-+.
T Consensus 215 ~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 479999999994 333488899999999999999753 334444433 3469999996554 555566755432
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh-hcCCceeEEEEcCccccCC
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL-LGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~-L~~~~w~~VIiDEAH~lKN 401 (1001)
.+.+.+-.|....+..-. + -........||++-||+-+.-.... -.--+...|||||.|.+..
T Consensus 289 glkvairVG~srIk~~~~---------------p-v~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 289 GLKVAIRVGMSRIKTREE---------------P-VVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred cceEEEEechhhhcccCC---------------c-cccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccc
Confidence 344445555443221100 0 0013456789999999977543322 1112467999999999975
Q ss_pred --cccHHHHHHhcc----cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee
Q psy10448 402 --NQSKFFKFLSGY----SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM 475 (1001)
Q Consensus 402 --~~Sk~~~al~~l----~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~ 475 (1001)
....+--.+..+ .....+.||||- .|+.||...|. .-.
T Consensus 353 eERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~----------------------------------a~l 396 (830)
T COG1202 353 EERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLG----------------------------------AKL 396 (830)
T ss_pred hhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhC----------------------------------Cee
Confidence 233333333333 345679999995 45556544332 111
Q ss_pred eeeeHhHHhhcCC-CceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCC
Q psy10448 476 LRRLKADVLKNMP-SKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAP 554 (1001)
Q Consensus 476 lRR~K~dv~~~LP-~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~ 554 (1001)
+... .-| |...+.+++.-.
T Consensus 397 V~y~------~RPVplErHlvf~~~e------------------------------------------------------ 416 (830)
T COG1202 397 VLYD------ERPVPLERHLVFARNE------------------------------------------------------ 416 (830)
T ss_pred Eeec------CCCCChhHeeeeecCc------------------------------------------------------
Confidence 1111 111 122223332211
Q ss_pred cCCChhhHHHHHHhhchHHHHHHHHHHHH----HcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 555 VQGGQYEIQALTRAAGKLVLLSKMLKKLK----EDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 555 ~~~~~~~~~~l~~~S~Kl~~L~klL~~l~----~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
+.|..++.++.+.-. ..|++
T Consensus 417 --------------~eK~~ii~~L~k~E~~~~sskg~r------------------------------------------ 440 (830)
T COG1202 417 --------------SEKWDIIARLVKREFSTESSKGYR------------------------------------------ 440 (830)
T ss_pred --------------hHHHHHHHHHHHHHHhhhhccCcC------------------------------------------
Confidence 112222222222111 11222
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
..+|||+.+.+-...|.++|..+|++..-+|++++-.+|+.+-..|.+.... .+++|.|.|.|+|+++.
T Consensus 441 --------GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 441 --------GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA---AVVTTAALAAGVDFPAS 509 (830)
T ss_pred --------CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc---eEeehhhhhcCCCCchH
Confidence 2467999999999999999999999999999999999999999999987665 79999999999999864
Q ss_pred CEEEEec-----CCCCcchhhhhhhhhhhcc
Q psy10448 711 DTVIIYD-----SDWNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 711 d~VIi~D-----~~WNP~~~iQriGRi~RiG 736 (1001)
.|||=. -+-+|..+.|..||++|.+
T Consensus 510 -QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 510 -QVIFESLAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred -HHHHHHHHcccccCCHHHHHHHhcccCCCC
Confidence 333311 1234554444444444443
No 107
>KOG0327|consensus
Probab=99.43 E-value=1.4e-12 Score=142.35 Aligned_cols=106 Identities=26% Similarity=0.419 Sum_probs=99.0
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCC
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWN 721 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WN 721 (1001)
+||++..+-++.|...|..+|+....++|.+...+|..++..|+.+.+. +|++|...+.|++++.++.||+||.|-|
T Consensus 267 ~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~argidv~~~slvinydlP~~ 343 (397)
T KOG0327|consen 267 VIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLLARGIDVQQVSLVVNYDLPAR 343 (397)
T ss_pred eEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeeccccccccchhhcceeeeeccccc
Confidence 4999999999999999999999999999999999999999999997665 8999999999999999999999999999
Q ss_pred cchhhhhhhhhhhccCcccccccccccee
Q psy10448 722 PHNDIQAFSRAHRIGQQNKYINLATADTV 750 (1001)
Q Consensus 722 P~~~iQriGRi~RiGq~~~~LNL~~A~~V 750 (1001)
...|+.|+||.+|.|-+.-.+|+..++.+
T Consensus 344 ~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 344 KENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred hhhhhhhcccccccCCCceeeeeehHhhH
Confidence 99999999999999988877777776654
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.42 E-value=1.2e-11 Score=150.83 Aligned_cols=96 Identities=24% Similarity=0.177 Sum_probs=85.9
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
+.++|||+.....++.|.++|...|+++..++|.++..+|.+++..|..+.. .+|++|..+++|++++.+++||++|
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcChhcCCeeeCCCcEEEEeC
Confidence 3455599999999999999999999999999999999999999999987543 5899999999999999999999999
Q ss_pred -----CCCCcchhhhhhhhhhhcc
Q psy10448 718 -----SDWNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 718 -----~~WNP~~~iQriGRi~RiG 736 (1001)
.+-+...++||+||++|..
T Consensus 519 adifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC
Confidence 4557788999999999963
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=1.4e-12 Score=158.29 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=80.6
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccc---cCC-----EEE
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLA---TAD-----TVI 714 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~---~Ad-----~VI 714 (1001)
|||.+....+.|...|...|+++..++|.....+++.+...+.. + .++|+|..+|.|+|+. .+. +||
T Consensus 445 I~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g--~VtIATnmAGRGtDI~l~~~V~~~GGLhVI 519 (796)
T PRK12906 445 VGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---G--AVTIATNMAGRGTDIKLGPGVKELGGLAVI 519 (796)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---c--eEEEEeccccCCCCCCCCcchhhhCCcEEE
Confidence 99999999999999999999999999999876555555555543 3 3899999999999995 566 999
Q ss_pred EecCCCCcchhhhhhhhhhhccCccc
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
.++.|-|...+.|++||++|.|....
T Consensus 520 ~te~pes~ri~~Ql~GRtGRqG~~G~ 545 (796)
T PRK12906 520 GTERHESRRIDNQLRGRSGRQGDPGS 545 (796)
T ss_pred eeecCCcHHHHHHHhhhhccCCCCcc
Confidence 99999999999999999999997764
No 110
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=1.6e-11 Score=149.84 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=111.6
Q ss_pred HhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEec
Q psy10448 567 RAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYN 646 (1001)
Q Consensus 567 ~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq 646 (1001)
....|...+.+.+..+...|..|+ |||.
T Consensus 425 t~~~k~~av~~~i~~~~~~g~PVL----------------------------------------------------Vgt~ 452 (896)
T PRK13104 425 TQADKFQAIIEDVRECGVRKQPVL----------------------------------------------------VGTV 452 (896)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEE----------------------------------------------------EEeC
Confidence 345677788888888888888777 9999
Q ss_pred cHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC---EEEEecCCCCcc
Q psy10448 647 MTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD---TVIIYDSDWNPH 723 (1001)
Q Consensus 647 ~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad---~VIi~D~~WNP~ 723 (1001)
+....+.|...|...|+++..++|.....+|+.+.+.|+.+ .++|+|..+|.|+|+.=.. .-+. +.+-++.
T Consensus 453 Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIATNmAGRGtDI~Lggn~~~~~~-~~~~~~~ 526 (896)
T PRK13104 453 SIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIATNMAGRGTDIVLGGSLAADLA-NLPADAS 526 (896)
T ss_pred cHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEeccCccCCcceecCCchhhhhh-ccccchh
Confidence 99999999999999999999999999999999999999885 2899999999999875321 0000 0000000
Q ss_pred hhhhhhhhhh-hccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHH
Q psy10448 724 NDIQAFSRAH-RIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQ 795 (1001)
Q Consensus 724 ~~iQriGRi~-RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~ 795 (1001)
.+..-..- +.-..++..-=.+.-+||.-+-+=|...|.|.-||++|.|..-....|- |+|+.++.
T Consensus 527 --~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~ 592 (896)
T PRK13104 527 --EQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMR 592 (896)
T ss_pred --hHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHH
Confidence 00000000 0000001111224557777777778888899999999988887776652 45555543
No 111
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.9e-10 Score=123.67 Aligned_cols=299 Identities=18% Similarity=0.204 Sum_probs=192.7
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDF 324 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~ 324 (1001)
+++|-|+|..+-+-|...+.+....|+-..+|.|||-+.-..+...+..+ +.+.|..| .-++-.-...+..-+++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhccC
Confidence 57999999999999999999999999999999999999888887777665 45888889 455555555666666677
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCc-c
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSN-Q 403 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~-~ 403 (1001)
.+...+|+.+... ...-||-||++.++-.. .|+++||||..-+--. +
T Consensus 172 ~I~~Lyg~S~~~f--------------------------r~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d 219 (441)
T COG4098 172 DIDLLYGDSDSYF--------------------------RAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDD 219 (441)
T ss_pred CeeeEecCCchhc--------------------------cccEEEEehHHHHHHHh------hccEEEEeccccccccCC
Confidence 7777777654321 12236667777665322 4899999999986322 2
Q ss_pred cHHHHHHhcc--cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee-eeeeH
Q psy10448 404 SKFFKFLSGY--SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM-LRRLK 480 (1001)
Q Consensus 404 Sk~~~al~~l--~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~-lRR~K 480 (1001)
-.+..+++.- .....+.|||||-..-..++ ++.-+...- -+|..
T Consensus 220 ~~L~~Av~~ark~~g~~IylTATp~k~l~r~~---------------------------------~~g~~~~~klp~RfH 266 (441)
T COG4098 220 QSLQYAVKKARKKEGATIYLTATPTKKLERKI---------------------------------LKGNLRILKLPARFH 266 (441)
T ss_pred HHHHHHHHHhhcccCceEEEecCChHHHHHHh---------------------------------hhCCeeEeecchhhc
Confidence 2333344332 34567999999942110000 000010000 01110
Q ss_pred hHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChh
Q psy10448 481 ADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQY 560 (1001)
Q Consensus 481 ~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~ 560 (1001)
.+.||-.... ++ .+.-+.+-
T Consensus 267 ---~~pLpvPkf~--w~--~~~~k~l~----------------------------------------------------- 286 (441)
T COG4098 267 ---GKPLPVPKFV--WI--GNWNKKLQ----------------------------------------------------- 286 (441)
T ss_pred ---CCCCCCCceE--Ee--ccHHHHhh-----------------------------------------------------
Confidence 0122222111 11 11111000
Q ss_pred hHHHHHHhhchHH-HHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 561 EIQALTRAAGKLV-LLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 561 ~~~~l~~~S~Kl~-~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
-+|+. .|...|++-...|..++
T Consensus 287 --------r~kl~~kl~~~lekq~~~~~P~l------------------------------------------------- 309 (441)
T COG4098 287 --------RNKLPLKLKRWLEKQRKTGRPVL------------------------------------------------- 309 (441)
T ss_pred --------hccCCHHHHHHHHHHHhcCCcEE-------------------------------------------------
Confidence 11111 24556666666666666
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEE---EEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYE---RIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~---ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
||.....+++-+...|+.. +++. .++.. ...|.+.+.+|+++.. -+|++|..+..|+.++..|++|+=
T Consensus 310 ---iF~p~I~~~eq~a~~lk~~-~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~---~lLiTTTILERGVTfp~vdV~Vlg 380 (441)
T COG4098 310 ---IFFPEIETMEQVAAALKKK-LPKETIASVHSE--DQHRKEKVEAFRDGKI---TLLITTTILERGVTFPNVDVFVLG 380 (441)
T ss_pred ---EEecchHHHHHHHHHHHhh-CCccceeeeecc--CccHHHHHHHHHcCce---EEEEEeehhhcccccccceEEEec
Confidence 9999999999999888542 3333 33333 3469999999998655 499999999999999999999986
Q ss_pred cCC--CCcchhhhhhhhhhhccCc
Q psy10448 717 DSD--WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 717 D~~--WNP~~~iQriGRi~RiGq~ 738 (1001)
.-. ++-+.++|..||++|--..
T Consensus 381 aeh~vfTesaLVQIaGRvGRs~~~ 404 (441)
T COG4098 381 AEHRVFTESALVQIAGRVGRSLER 404 (441)
T ss_pred CCcccccHHHHHHHhhhccCCCcC
Confidence 544 8888899999998885543
No 112
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.36 E-value=1.3e-12 Score=115.82 Aligned_cols=81 Identities=35% Similarity=0.576 Sum_probs=74.1
Q ss_pred HHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhh
Q psy10448 653 ILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRA 732 (1001)
Q Consensus 653 iL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi 732 (1001)
.|..+|...++.+..++|+++..+|..+++.|+++.. .+|++|.++++|+|++.+++||+++++||+..++|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999998655 5899999999999999999999999999999899988888
Q ss_pred hhcc
Q psy10448 733 HRIG 736 (1001)
Q Consensus 733 ~RiG 736 (1001)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 8876
No 113
>KOG0351|consensus
Probab=99.36 E-value=1.2e-11 Score=153.29 Aligned_cols=307 Identities=18% Similarity=0.136 Sum_probs=206.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCe
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFY 325 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~ 325 (1001)
-..||-|.++|+-.+ .+..+++-+.+|-||++.-- +..-...|-+|||.| .||+.--...+... ++.
T Consensus 263 ~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCYQ------lPA~l~~gitvVISPL~SLm~DQv~~L~~~--~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCYQ------LPALLLGGVTVVISPLISLMQDQVTHLSKK--GIP 330 (941)
T ss_pred ccCChhHHHHHHHHH----cCCceEEEeecCCceeeEee------ccccccCCceEEeccHHHHHHHHHHhhhhc--Ccc
Confidence 357899999997444 88889999999999997531 111222446899999 67776555555332 444
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhh------cC-CceeEEEEcCccc
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALL------GS-IEWAVLVVDEAHR 398 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L------~~-~~w~~VIiDEAH~ 398 (1001)
.....+..........+ . .+......++++..|.|.+......+ .. ....++||||||.
T Consensus 331 a~~L~s~q~~~~~~~i~----q----------~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAIL----Q----------KLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred eeeccccccHHHHHHHH----H----------HHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 55555544443221111 0 01133457889999999998753221 11 1268999999998
Q ss_pred cCCc-------ccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhc
Q psy10448 399 LKSN-------QSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLL 471 (1001)
Q Consensus 399 lKN~-------~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL 471 (1001)
+... ..++......+...-.+.||||--..--+|+...|++-+|..|.+.
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s----------------------- 453 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS----------------------- 453 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-----------------------
Confidence 7432 2233333334445567999999877777777777777666533211
Q ss_pred CCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhh
Q psy10448 472 GPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAE 551 (1001)
Q Consensus 472 ~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~ 551 (1001)
..++.-.+.|....+ ...+..++...+..
T Consensus 454 --------------fnR~NL~yeV~~k~~-------------------------~~~~~~~~~~~~~~------------ 482 (941)
T KOG0351|consen 454 --------------FNRPNLKYEVSPKTD-------------------------KDALLDILEESKLR------------ 482 (941)
T ss_pred --------------CCCCCceEEEEeccC-------------------------ccchHHHHHHhhhc------------
Confidence 111222222221111 00111111111110
Q ss_pred cCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccc
Q psy10448 552 EAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 631 (1001)
Q Consensus 552 ~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1001)
T Consensus 483 -------------------------------------------------------------------------------- 482 (941)
T KOG0351|consen 483 -------------------------------------------------------------------------------- 482 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC
Q psy10448 632 NEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD 711 (1001)
Q Consensus 632 ~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad 711 (1001)
.+..-.||||....+++.+...|...|++...+|.+++..+|+.+-..|..+.. .+++.|=|.|.|||-++..
T Consensus 483 ----~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~---~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 483 ----HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKI---RVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred ----CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCC---eEEEEEeeccCCCCCCcee
Confidence 011234699999999999999999999999999999999999999999998663 5899999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
-||+|..|-+--.|-|-.||++|.|..+.
T Consensus 556 ~ViH~~lPks~E~YYQE~GRAGRDG~~s~ 584 (941)
T KOG0351|consen 556 FVIHYSLPKSFEGYYQEAGRAGRDGLPSS 584 (941)
T ss_pred EEEECCCchhHHHHHHhccccCcCCCcce
Confidence 99999999999999999999999998766
No 114
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.32 E-value=2.1e-10 Score=145.69 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=62.9
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCe---EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYK---YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~---~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
++|||+.....++.+.+.|...+++ +.-++|+++.++|+.+++.+ + ...+|+||.+++.||+++..++||.+
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g--~rkIIVATNIAEtSITIpgI~yVID~ 362 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---S--GRRIVLATNVAETSLTVPGIKYVIDP 362 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---C--CeeEEEeccHHhhccccCcceEEEEC
Confidence 4669999999999999999988765 56789999999999887652 2 23689999999999999999999987
Q ss_pred c
Q psy10448 717 D 717 (1001)
Q Consensus 717 D 717 (1001)
+
T Consensus 363 G 363 (1294)
T PRK11131 363 G 363 (1294)
T ss_pred C
Confidence 5
No 115
>KOG0334|consensus
Probab=99.32 E-value=3.7e-11 Score=145.68 Aligned_cols=94 Identities=21% Similarity=0.329 Sum_probs=86.9
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....+|.|.+-|...||.+..+||..+..+|...|..|+++.. .+|+.|+..+.|+++..-..||+||.+
T Consensus 615 ~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~---~LLvaTsvvarGLdv~~l~Lvvnyd~p 691 (997)
T KOG0334|consen 615 KTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV---NLLVATSVVARGLDVKELILVVNYDFP 691 (997)
T ss_pred CEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc---eEEEehhhhhcccccccceEEEEcccc
Confidence 45699999999999999999999999999999999999999999998655 499999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhcc
Q psy10448 720 WNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiG 736 (1001)
---..|+.|.||.+|.|
T Consensus 692 nh~edyvhR~gRTgrag 708 (997)
T KOG0334|consen 692 NHYEDYVHRVGRTGRAG 708 (997)
T ss_pred hhHHHHHHHhcccccCC
Confidence 88888999988888877
No 116
>KOG0952|consensus
Probab=99.32 E-value=6.7e-11 Score=142.17 Aligned_cols=162 Identities=20% Similarity=0.275 Sum_probs=105.8
Q ss_pred HhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-------CCCcEEEEeC-cchH----HHHHHHHHHHCCCCeEEEE
Q psy10448 262 YSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-------CKGPFLVSAP-LSTI----INWEREFETWAPDFYVVTY 329 (1001)
Q Consensus 262 ~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-------~~~p~LIV~P-~sll----~qW~~E~~k~~p~~~vv~y 329 (1001)
-.+..+.|+|++.++|.|||..|...|..++++.. ..-.++-|+| ++|. .+|-.-|.-| ++.|..+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 34678889999999999999999998888877521 1224788999 5555 4555555544 6788888
Q ss_pred eCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHh-------hHhhhcCCceeEEEEcCccccCCc
Q psy10448 330 VGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITN-------DVALLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 330 ~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~-------d~~~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.|+...-. ......+|+|||+|...- +...+. ...+|||||.|.|...
T Consensus 199 TGD~ql~~-----------------------tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~ 253 (1230)
T KOG0952|consen 199 TGDTQLTK-----------------------TEIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDD 253 (1230)
T ss_pred cCcchhhH-----------------------HHHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCc
Confidence 88764321 224567899999997632 122222 3579999999999765
Q ss_pred ccH-----HHHHHhcc----cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHH
Q psy10448 403 QSK-----FFKFLSGY----SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEF 455 (1001)
Q Consensus 403 ~Sk-----~~~al~~l----~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f 455 (1001)
... ..+.++.. ..-+.++||||- -|++|+ ..||...+....-.|...|
T Consensus 254 RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDv---A~fL~vn~~~glfsFd~~y 310 (1230)
T KOG0952|consen 254 RGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDV---ARFLRVNPYAGLFSFDQRY 310 (1230)
T ss_pred ccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHH---HHHhcCCCccceeeecccc
Confidence 533 33444322 334568999994 245554 4566555544444555444
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.31 E-value=2.8e-10 Score=139.78 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=85.2
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
+.++||||.....++.|...|...|+++..++|.++..+|..++..|..+.. .+|++|...+.|++++.+++||++|
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i---~vlV~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF---DVLVGINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc---eEEEEeCHHhCCccccCCcEEEEeC
Confidence 3456699999999999999999999999999999999999999999987543 5889999999999999999999999
Q ss_pred C-----CCCcchhhhhhhhhhhc
Q psy10448 718 S-----DWNPHNDIQAFSRAHRI 735 (1001)
Q Consensus 718 ~-----~WNP~~~iQriGRi~Ri 735 (1001)
. +-++..|+||+||++|.
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred CcccccCCCHHHHHHHhccccCC
Confidence 7 45788899999888883
No 118
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=8e-11 Score=143.70 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=93.6
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC-CEEEE----ec
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA-DTVII----YD 717 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A-d~VIi----~D 717 (1001)
|||......+.|...|...|+++..++|. ..+|.+.|..|..... .++|+|..+|.|+|+.-. +.-.. +.
T Consensus 435 Ift~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g---~VtIATNmAGRGtDI~LgGn~~~~~~~~~~ 509 (830)
T PRK12904 435 VGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG---AVTIATNMAGRGTDIKLGGNPEMLAAALLE 509 (830)
T ss_pred EEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc---eEEEecccccCCcCccCCCchhhhhhhhhh
Confidence 99999999999999999999999999995 6789999999987554 489999999999987543 00000 00
Q ss_pred CCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHH
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQ 795 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~ 795 (1001)
..|. ..+.+..-++ ....+..--.+.-+||..+-+=|...|.|..||++|.|..-....|- |+|+.++.
T Consensus 510 ~~~~-~~~~~~~~~~---~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~ 578 (830)
T PRK12904 510 EETE-EQIAKIKAEW---QEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMR 578 (830)
T ss_pred hhhh-HHHHHHHHHH---hhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHH
Confidence 0110 0000000000 00001111234567777777778889999999999999988877662 45555543
No 119
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.28 E-value=5.7e-11 Score=125.07 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC--CCCCcEEEEeC-cchHHHHHHHHHHHCC--
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG--HCKGPFLVSAP-LSTIINWEREFETWAP-- 322 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~--~~~~p~LIV~P-~sll~qW~~E~~k~~p-- 322 (1001)
.+++||.++++-+. .+.+++++.++|.|||+..+..+...+... .....+|||+| ..++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~----~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLL----SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 48999999997765 478899999999999999655544444333 23345899999 6688999999988864
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccC
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lK 400 (1001)
+..+..+.|.......... .....+|+|+|.+.+...... +.-..+.++|+||+|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRK--------------------LKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CceEEEEECCCCHHHHHHH--------------------hcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 5666777776544322211 113568999999887664321 222346899999999986
Q ss_pred Ccc-cH-HHHHHhccc-ccceEeeecCCC
Q psy10448 401 SNQ-SK-FFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 401 N~~-Sk-~~~al~~l~-~~~rllLTGTPl 426 (1001)
+.. .. ....+..+. ....+++||||-
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 443 22 222333443 456799999996
No 120
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.27 E-value=1.2e-12 Score=125.93 Aligned_cols=44 Identities=89% Similarity=1.209 Sum_probs=43.3
Q ss_pred eccchHHHHHHHhhhhccccccccCCChhhhhcccchHHHHHHH
Q psy10448 940 VLNQLEELLSDMKSDVSRLPATLARIPPVAQRLHMSERSILSRL 983 (1001)
Q Consensus 940 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (1001)
||+|||++|+|||+||+|||++|+||||||+||+||||+|||||
T Consensus 130 vL~qleelLsDMKaDV~RLPatlsri~pVa~RLqmSEr~ILSrL 173 (173)
T PF08074_consen 130 VLNQLEELLSDMKADVTRLPATLSRIPPVAARLQMSERSILSRL 173 (173)
T ss_pred HHHHHHHHHHHhhccccccCcccccCCchHhHhcccHHHHHhcC
Confidence 79999999999999999999999999999999999999999997
No 121
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.27 E-value=4.6e-11 Score=121.59 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC--CeEE
Q psy10448 251 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD--FYVV 327 (1001)
Q Consensus 251 pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~--~~vv 327 (1001)
|+|.+++.-+. ++.+.++..++|.|||..++..+...+... ..+.+||++| .+++.|-..++..++.. ..+.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 78999997766 677899999999999999998777766655 3446999999 66888888999998854 5677
Q ss_pred EEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc--c
Q psy10448 328 TYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN--Q 403 (1001)
Q Consensus 328 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~--~ 403 (1001)
.++|.......... ......+|+|+|++.+...... +.-....+||+||+|.+-.. .
T Consensus 77 ~~~~~~~~~~~~~~-------------------~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~ 137 (169)
T PF00270_consen 77 LLHGGQSISEDQRE-------------------VLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFR 137 (169)
T ss_dssp EESTTSCHHHHHHH-------------------HHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHH
T ss_pred cccccccccccccc-------------------cccccccccccCcchhhccccccccccccceeeccCcccccccccHH
Confidence 77665432111100 0012478999999999887653 12233789999999998652 2
Q ss_pred cHHHHHHhcc---cccceEeeecCCCCCCHHH
Q psy10448 404 SKFFKFLSGY---SIQNKLLLTGTPLQNNLEE 432 (1001)
Q Consensus 404 Sk~~~al~~l---~~~~rllLTGTPlqN~l~E 432 (1001)
......+..+ ...+.+++||||- .+++.
T Consensus 138 ~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 138 AMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp HHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 2233333333 3456899999997 55443
No 122
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=2.8e-10 Score=138.75 Aligned_cols=152 Identities=15% Similarity=0.098 Sum_probs=103.7
Q ss_pred hhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEecc
Q psy10448 568 AAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNM 647 (1001)
Q Consensus 568 ~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~ 647 (1001)
...|...+.+-+..+.+.|..|+ |||..
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVL----------------------------------------------------V~t~s 458 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVL----------------------------------------------------VGTVS 458 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEE----------------------------------------------------EEeCc
Confidence 45677777777888888887777 99999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC---EEEEecCCCCcch
Q psy10448 648 TKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD---TVIIYDSDWNPHN 724 (1001)
Q Consensus 648 ~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad---~VIi~D~~WNP~~ 724 (1001)
....+.|...|...|+++..+++..+..+|..+.+.|+.+. ++|+|..+|.|+|+.=.. ..+. ... +|..
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnmAGRGTDIkLggn~~~~~~-~~~-~~~~ 531 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNMAGRGTDIVLGGNWNMEIE-ALE-NPTA 531 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCCcCCCcceecCCchHHhhh-hhc-chhh
Confidence 99999999999999999999999999999999999998743 899999999999865321 0000 000 0000
Q ss_pred --hhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 725 --DIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 725 --~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
+.+..-+ .-...+..-=.+.-+||.-+.+=|...|.|.-||++|.|..-....|
T Consensus 532 ~~~~~~~~~---~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 532 EQKAKIKAD---WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred HHHHHHHHH---HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE
Confidence 0000000 00000001112445677777777777888888888888887766555
No 123
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.19 E-value=1.6e-09 Score=138.38 Aligned_cols=121 Identities=10% Similarity=0.125 Sum_probs=84.4
Q ss_pred eeEEEeccHHHHHHHHHHHhhCC---CeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEG---YKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~g---i~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
++|||......++.+.+.|...+ +.+.-++|+++.++|+++++.+ +.. .+|+||.++..||+++..++||.+
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~r--kIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGR--RIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCc--eEEEeccHHHhccccCCeeEEEeC
Confidence 45699999999999999998764 4577899999999999885543 222 589999999999999999999988
Q ss_pred cCC----CCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHH
Q psy10448 717 DSD----WNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEE 791 (1001)
Q Consensus 717 D~~----WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE 791 (1001)
+.. +||..-.|+... .+-+.+.-.|+.||++|.| +-.+|||+++..++.
T Consensus 356 Gl~r~~~yd~~~~~~~L~~-----------------------~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPI-----------------------EPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred CCccccccccccCccccCC-----------------------ccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 743 344311111100 0001224566666666665 556788888765543
No 124
>KOG0337|consensus
Probab=99.17 E-value=7.9e-11 Score=129.44 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=94.1
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
..+||+.-...++++...|...|+...-|.|++....|..-+.+|+..... +|++|+.+..|++.+--++||+||.|
T Consensus 263 ~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p 339 (529)
T KOG0337|consen 263 QTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFP 339 (529)
T ss_pred ceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCC
Confidence 456999999999999999999999999999999999999999999986655 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCccccccccccc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQNKYINLATAD 748 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~~~~LNL~~A~ 748 (1001)
-.+..+..|+||+.|.|...-..-+...+
T Consensus 340 ~~~klFvhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 340 PDDKLFVHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred CCCceEEEEecchhhccccceEEEEEecc
Confidence 99999999999999999665433333333
No 125
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.16 E-value=2.1e-09 Score=133.94 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcC---CCCCcEEEEEeccccccccccccCCE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNA---PGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~---~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
..+.|++|.++.+..+..+...|+..+.++..+||.++..+|.+.++...+ .+.. .++|+|++...|+|+. .|.
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~--~IvVaTQVIEagvDid-fd~ 514 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEG--FIVVATQVIEAGVDID-FDV 514 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCC--eEEEEeeEEEEEeccc-cCe
Confidence 344667799999999999999999998889999999999999998886553 2223 5899999999999987 666
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcC--CCCeEEEEEEEeCCCHH
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIG--QQNKVMIYRFVTRNSVE 790 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiG--Q~k~V~Vyrlvt~~TiE 790 (1001)
+|- +-+|. ..-.|+.|||+|-| ....+.||...-.....
T Consensus 515 mIT---e~aPi------------------------------------dSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 515 LIT---ELAPI------------------------------------DSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred eee---cCCCH------------------------------------HHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 653 12222 03445555555555 55678888777777777
Q ss_pred HHHHHHHHHHHHH
Q psy10448 791 ERVTQVAKRKMML 803 (1001)
Q Consensus 791 E~I~~~~~~K~~l 803 (1001)
.+.+.....++.-
T Consensus 556 ~~~~~~~~~~~~~ 568 (733)
T COG1203 556 KYSYEKLEKKLKS 568 (733)
T ss_pred hhhhhcchhhhcc
Confidence 7777666665543
No 126
>KOG0353|consensus
Probab=99.15 E-value=2.5e-09 Score=115.62 Aligned_cols=345 Identities=18% Similarity=0.174 Sum_probs=217.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
+.||-|++++|-.. .+..++|...+|-||++.--.-+ +. ..|-+||||| .||+....-.++...-+...
T Consensus 94 kfrplq~~ain~~m----a~ed~~lil~tgggkslcyqlpa--l~----adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQLPA--LC----ADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhh----ccCceEEEEeCCCccchhhhhhH--Hh----cCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 57899999998654 67789999999999997432211 11 2456899999 67777777777776544333
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-------hhcCCceeEEEEcCcccc
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-------LLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-------~L~~~~w~~VIiDEAH~l 399 (1001)
+-...++..-..... .+.+....|.++.+|++.+.+... .+....|.++-|||.|..
T Consensus 164 lnansske~~k~v~~----------------~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhcc 227 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEA----------------AITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCC 227 (695)
T ss_pred ccCcccHHHHHHHHH----------------HHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeeh
Confidence 333333322222111 111455678899999998876543 344456889999999976
Q ss_pred CC-------cccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC
Q psy10448 400 KS-------NQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG 472 (1001)
Q Consensus 400 KN-------~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~ 472 (1001)
.- ..+.+.-.-++++....++||||...+-+.|.-.+|..-.. -.|..-|
T Consensus 228 sqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------~tf~a~f----------------- 284 (695)
T KOG0353|consen 228 SQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------FTFRAGF----------------- 284 (695)
T ss_pred hhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh------heeeccc-----------------
Confidence 32 22222223345677778999999988877765544421100 0010001
Q ss_pred CeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhc
Q psy10448 473 PHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEE 552 (1001)
Q Consensus 473 ~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~ 552 (1001)
+-|...+.++.-+ +.. ..
T Consensus 285 -------------nr~nl~yev~qkp-~n~-dd----------------------------------------------- 302 (695)
T KOG0353|consen 285 -------------NRPNLKYEVRQKP-GNE-DD----------------------------------------------- 302 (695)
T ss_pred -------------CCCCceeEeeeCC-CCh-HH-----------------------------------------------
Confidence 1111111111100 000 00
Q ss_pred CCcCCChhhHHHHHHhhchHHHHHHHHHHHHH--cCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccc
Q psy10448 553 APVQGGQYEIQALTRAAGKLVLLSKMLKKLKE--DGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 630 (1001)
Q Consensus 553 ~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~--~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1001)
.+..+.+.++. .|..
T Consensus 303 ---------------------~~edi~k~i~~~f~gqs------------------------------------------ 319 (695)
T KOG0353|consen 303 ---------------------CIEDIAKLIKGDFAGQS------------------------------------------ 319 (695)
T ss_pred ---------------------HHHHHHHHhccccCCCc------------------------------------------
Confidence 01111111110 1111
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA 710 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A 710 (1001)
-||||-...-.+.+...|..+|+....++..+.+.+|.-+-..+-++.. -+++.|-|.|.||+-+..
T Consensus 320 ----------giiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ei---qvivatvafgmgidkpdv 386 (695)
T KOG0353|consen 320 ----------GIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEI---QVIVATVAFGMGIDKPDV 386 (695)
T ss_pred ----------ceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccce---EEEEEEeeecccCCCCCe
Confidence 2388888888899999999999999999999999988888777776544 478999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhh-hccCccc--------cccccccc--eeEeecCCCCCcchhhHhhhhhhcCCCCeEE
Q psy10448 711 DTVIIYDSDWNPHNDIQAFSRAH-RIGQQNK--------YINLATAD--TVIIYDSDWNPHNDIQAFSRAHRIGQQNKVM 779 (1001)
Q Consensus 711 d~VIi~D~~WNP~~~iQriGRi~-RiGq~~~--------~LNL~~A~--~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~ 779 (1001)
..||+-..|-+-..|-|+..|+. |+..++. -+|+...+ .-|+|-. .-..--|||+|-||+-.+.
T Consensus 387 rfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffav-----fsekesgragrd~~~a~ci 461 (695)
T KOG0353|consen 387 RFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAV-----FSEKESGRAGRDDMKADCI 461 (695)
T ss_pred eEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeee-----ecchhccccccCCCcccEE
Confidence 99999999999999999999984 5432221 23433322 2222221 2223569999999999998
Q ss_pred EEEEE
Q psy10448 780 IYRFV 784 (1001)
Q Consensus 780 Vyrlv 784 (1001)
.|+=.
T Consensus 462 lyy~~ 466 (695)
T KOG0353|consen 462 LYYGF 466 (695)
T ss_pred EEech
Confidence 88643
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=1.8e-09 Score=132.25 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=86.7
Q ss_pred CCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC-----
Q psy10448 637 GLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD----- 711 (1001)
Q Consensus 637 ~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad----- 711 (1001)
.+..+||||+++...+.|...|...|+++..+++ ...+|++.|..|..... .++|+|..+|.|+|+.-..
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATNMAGRGtDIkl~~~V~~v 671 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATNMAGRGTDIKLGEGVREL 671 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEeccCcCCCCCcCCccchhhh
Confidence 3556779999999999999999999999999997 57789999999987544 4899999999999998433
Q ss_pred ---EEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 712 ---TVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 712 ---~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+||.++.+-+...+.|++||++|.|....
T Consensus 672 GGL~VIgterhes~Rid~Ql~GRtGRqGdpGs 703 (1025)
T PRK12900 672 GGLFILGSERHESRRIDRQLRGRAGRQGDPGE 703 (1025)
T ss_pred CCceeeCCCCCchHHHHHHHhhhhhcCCCCcc
Confidence 45888999999999999999999998765
No 128
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.13 E-value=3.5e-09 Score=134.41 Aligned_cols=124 Identities=22% Similarity=0.269 Sum_probs=80.1
Q ss_pred eeEEEeccHHHHHHHHHHHhh----CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC--CEE
Q psy10448 640 ESIEFYNMTKMLDILEDYLDG----EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA--DTV 713 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A--d~V 713 (1001)
++|||+....+++.+...|.. .++. .+..+.. ..|.+++++|..++. .+|++|.+..+|||++.. ..|
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~---~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEK---AILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCC---eEEEEcceeecccccCCCceEEE
Confidence 445999999999999998875 3444 3333333 468999999988544 378899999999999884 578
Q ss_pred EEecCCC-Ccch-hhhhhhh-hhhccCc-cccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 714 IIYDSDW-NPHN-DIQAFSR-AHRIGQQ-NKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 714 Ii~D~~W-NP~~-~iQriGR-i~RiGq~-~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
||.-.|+ +|.. .+++.-. ..+.|.. ..-..|..|- -.-.||+||+-|-.+.+-|.+
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~-----------~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAI-----------IRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHH-----------HHHHHhhccccccCCceEEEE
Confidence 8888776 4442 2333221 1112211 0111111111 146799999999998887654
No 129
>KOG0352|consensus
Probab=99.10 E-value=6.7e-09 Score=114.32 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=86.5
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCC
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWN 721 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WN 721 (1001)
||||.-....+.+.-.|...|++..-++.+....+|..+-+.+-+++.+ +++.|-+.|.|++-++...||++|++-|
T Consensus 259 IVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 259 IVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred EEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhh
Confidence 5999999999999999999999999999999999999999999887766 7889999999999999999999999999
Q ss_pred cchhhhhhhhhhhccCcc
Q psy10448 722 PHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 722 P~~~iQriGRi~RiGq~~ 739 (1001)
-.-|-|--||++|.|..+
T Consensus 336 ~AgYYQESGRAGRDGk~S 353 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRS 353 (641)
T ss_pred hHHHHHhccccccCCCcc
Confidence 998888777777777543
No 130
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.10 E-value=8.7e-10 Score=121.89 Aligned_cols=222 Identities=18% Similarity=0.225 Sum_probs=122.6
Q ss_pred eEEEEEEcCCHHHHHHHHHHHHHhhhhhCC----CCCC----------ccchHHHHHHHHHHHhcCCCCCchhhhcCCcC
Q psy10448 491 SEFIVRVELSPMQKKYYKYILTRNFEALNP----KGGG----------QQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQ 556 (1001)
Q Consensus 491 ~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~----~~~~----------~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~ 556 (1001)
.++.++++|+..|+++|+.++.-....+.. .... ....+..++..++.+|+||+|+..-..... .
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~-l 82 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ-L 82 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S--S
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc-c
Confidence 467899999999999999998765544321 1111 113455667889999999999644322111 1
Q ss_pred CChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCC
Q psy10448 557 GGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIP 636 (1001)
Q Consensus 557 ~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1001)
........+...|+|+.+|..++..+.+...+-
T Consensus 83 l~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~----------------------------------------------- 115 (297)
T PF11496_consen 83 LLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRRE----------------------------------------------- 115 (297)
T ss_dssp -STTHHHHHHHT-HHHHHHHHHHHHH-----TT-----------------------------------------------
T ss_pred ccchHHHHHHHcCchHHHHHHHHHHHHhhhccc-----------------------------------------------
Confidence 233456788899999999999999984422111
Q ss_pred CCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHH------------HHhcC-CCCCcEEEEEecccccc
Q psy10448 637 GLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESI------------DRFNA-PGASQFVFLLSTRSGGL 703 (1001)
Q Consensus 637 ~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~I------------d~Fn~-~~~~~~v~LlStragg~ 703 (1001)
..-+++|.++..+++|+|+.+|...++.|.|++|..-..+....- ..... +.....++|+++.-...
T Consensus 116 ~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~ 195 (297)
T PF11496_consen 116 YPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYN 195 (297)
T ss_dssp SSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---T
T ss_pred CCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccc
Confidence 113566999999999999999999999999999975544332222 11111 12233355555554433
Q ss_pred c----cccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhh-hhcCCCCeE
Q psy10448 704 G----INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRA-HRIGQQNKV 778 (1001)
Q Consensus 704 G----INL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~Ra-hRiGQ~k~V 778 (1001)
. ++-...|.||-||+.+++. .+.-..-|. +|-+ +.+
T Consensus 196 ~~~~~~~~~~~d~IIsfD~~~d~~-------------------------------------~p~i~~lR~~~~~~--~~~ 236 (297)
T PF11496_consen 196 NKPPLLSNYNFDLIISFDPSFDTS-------------------------------------LPSIEQLRTQNRRN--RLC 236 (297)
T ss_dssp TTS--TT-S-EEEEEE-SST--TT-------------------------------------SHHHHHHH---------S-
T ss_pred cCCCccccCCcCEEEEecCCCCCC-------------------------------------ChHHHHHHhhcCCC--CCC
Confidence 1 2223457777777777766 444333343 3333 789
Q ss_pred EEEEEEeCCCHHHHHHHHHHH
Q psy10448 779 MIYRFVTRNSVEERVTQVAKR 799 (1001)
Q Consensus 779 ~Vyrlvt~~TiEE~I~~~~~~ 799 (1001)
-|+|||..+|+|--++.....
T Consensus 237 PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 237 PIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp -EEEEEETTSHHHHHHHHTTT
T ss_pred cEEEEeeCCCHHHHHHHccCc
Confidence 999999999999988765543
No 131
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.4e-07 Score=107.39 Aligned_cols=100 Identities=23% Similarity=0.221 Sum_probs=90.2
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
.+..+++++|-+--.+|.+-|.+||...|+++..+|+.+..-+|.++|...+.+.-+ +|+....+-+|||++.+..|
T Consensus 442 r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDiPEVsLV 518 (663)
T COG0556 442 RVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDLPEVSLV 518 (663)
T ss_pred HHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCCcceeEE
Confidence 345678999999999999999999999999999999999999999999999986655 89999999999999999999
Q ss_pred EEecCCC-----Ccchhhhhhhhhhhcc
Q psy10448 714 IIYDSDW-----NPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 714 Ii~D~~W-----NP~~~iQriGRi~RiG 736 (1001)
.|+|.|- +-..+||-+||+.|--
T Consensus 519 AIlDADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 519 AILDADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred EEeecCccccccccchHHHHHHHHhhcc
Confidence 9999884 6778888888888844
No 132
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=98.94 E-value=5e-10 Score=92.94 Aligned_cols=56 Identities=59% Similarity=0.959 Sum_probs=49.1
Q ss_pred CCccchHHHHhhhhcCChhHHHHHhHhHhhhhhhhHHhhhCCCccccccCCCCCCc
Q psy10448 841 EQPENTEIIKQEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQTDDENDD 896 (1001)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 896 (1001)
+++...+.+++..++.+|+||++||+++|++++++.++.||||||.||||+..+++
T Consensus 7 ~ee~~~e~~~~~~~~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~ 62 (66)
T PF06465_consen 7 EEEAETEIIKEEAESTDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEED 62 (66)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 34556778888889999999999999999999999999999999999999866543
No 133
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.94 E-value=1.4e-07 Score=115.64 Aligned_cols=146 Identities=13% Similarity=0.183 Sum_probs=94.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHHCCCC
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETWAPDF 324 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~~p~~ 324 (1001)
++|||...+.-+. .+.|.|....+|.|||++++..+......+ .+++||+|+.-+ .+|...+.++. ++
T Consensus 93 ~tp~qvQ~I~~i~----l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v~IVTpTrELA~Qdae~m~~L~k~l-GL 164 (970)
T PRK12899 93 MVPYDVQILGAIA----MHKGFITEMQTGEGKTLTAVMPLYLNALTG---KPVHLVTVNDYLAQRDCEWVGSVLRWL-GL 164 (970)
T ss_pred CChHHHHHhhhhh----cCCCeEEEeCCCCChHHHHHHHHHHHHhhc---CCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 7899999886555 667899999999999999876655333222 248888996554 45777777776 47
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHH-HhhHh----hh-----cCCceeEEEEc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELI-TNDVA----LL-----GSIEWAVLVVD 394 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l-~~d~~----~L-----~~~~w~~VIiD 394 (1001)
.+.+..|......... ...++|+++|...+ ..... .+ -...+.++|||
T Consensus 165 sV~~i~GG~~~~eq~~----------------------~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IID 222 (970)
T PRK12899 165 TTGVLVSGSPLEKRKE----------------------IYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIID 222 (970)
T ss_pred eEEEEeCCCCHHHHHH----------------------HcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEe
Confidence 7766666543332211 12468999999888 32211 11 12356799999
Q ss_pred CccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhh
Q psy10448 395 EAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLL 437 (1001)
Q Consensus 395 EAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL 437 (1001)
||..+-- -.+..-|++||.+-.. .++|..+
T Consensus 223 EADsmLi-----------DEArTPLIISg~~~~~--~~~Y~~~ 252 (970)
T PRK12899 223 EVDSILI-----------DEARTPLIISGPGEKH--NPVYFEL 252 (970)
T ss_pred chhhhhh-----------hccCCceeeeCCCccc--cHHHHHH
Confidence 9998632 2355568899886433 3444433
No 134
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.94 E-value=5.1e-08 Score=116.69 Aligned_cols=115 Identities=19% Similarity=0.115 Sum_probs=84.5
Q ss_pred hhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEecc
Q psy10448 568 AAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNM 647 (1001)
Q Consensus 568 ~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~ 647 (1001)
...|...+.+-+.++.+.|..|| |.+.+
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVL----------------------------------------------------Vgt~s 436 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVL----------------------------------------------------VGTHD 436 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEE----------------------------------------------------EEeCC
Confidence 44577777777878888888777 99999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC---------------CE
Q psy10448 648 TKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA---------------DT 712 (1001)
Q Consensus 648 ~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A---------------d~ 712 (1001)
+..-+.|...|...|+++..++.... ++-..+|.+ ++..+ .+-|+|..+|.|.|+.-. =+
T Consensus 437 I~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~--AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLh 511 (764)
T PRK12326 437 VAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE--AGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLH 511 (764)
T ss_pred HHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh--cCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcE
Confidence 99999999999999999999988644 223444543 33334 489999999999886532 36
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCcc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
||.-..+-|-....|-.||++|.|...
T Consensus 512 VIgTerheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 512 VIGTGRHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred EEeccCCchHHHHHHHhcccccCCCCC
Confidence 666666666666666666666666553
No 135
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.91 E-value=6.4e-08 Score=105.39 Aligned_cols=233 Identities=21% Similarity=0.236 Sum_probs=147.1
Q ss_pred CCcccHHHHHHHHHHHHhhc------CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWG------QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~------~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
.+.|-.-|+|+|-+...... .+.|.+|+|.+|.||..|+.++|...+..+. .+++-|-+...|..-=++.+..
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-CceEEEECChhhhhHHHHHHHH
Confidence 56789999999988765554 3668899999999999999999998887775 3456666667777666666665
Q ss_pred HCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-------hhcC-Cce---
Q psy10448 320 WAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-------LLGS-IEW--- 388 (1001)
Q Consensus 320 ~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-------~L~~-~~w--- 388 (1001)
-... .+.+..-.+ + ..+. ....+..|+++||.++..... .|.. +.|
T Consensus 114 IG~~-~i~v~~l~~----------~-------~~~~-----~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~ 170 (303)
T PF13872_consen 114 IGAD-NIPVHPLNK----------F-------KYGD-----IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGE 170 (303)
T ss_pred hCCC-cccceechh----------h-------ccCc-----CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhc
Confidence 4322 111111100 0 0000 112355699999999987631 1211 123
Q ss_pred ---eEEEEcCccccCCccc------HHHHHHhcc----cccceEeeecCCCCCCHHHH--HHhhhccCC-CCCCChhHHH
Q psy10448 389 ---AVLVVDEAHRLKSNQS------KFFKFLSGY----SIQNKLLLTGTPLQNNLEEL--FHLLNFLTP-EKFNDLTSFQ 452 (1001)
Q Consensus 389 ---~~VIiDEAH~lKN~~S------k~~~al~~l----~~~~rllLTGTPlqN~l~EL--~~LL~fL~p-~~f~~~~~F~ 452 (1001)
.+||+||||+.||..+ +...++..+ ...+.+..|||...+ +..| +.-|.+-.+ .+|.+..+|.
T Consensus 171 dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~ 249 (303)
T PF13872_consen 171 DFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFL 249 (303)
T ss_pred CCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHH
Confidence 3899999999999765 555555443 445678999998754 2222 111212222 3577888888
Q ss_pred HHHccccHHHHHHHHHh--hcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHH
Q psy10448 453 AEFADISKEEQVKRLHD--LLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKY 509 (1001)
Q Consensus 453 ~~f~~~~~~~~~~~L~~--lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~ 509 (1001)
.....-. ....+-+.. .....+++|.. .+-.-+..++.++|++.|.++|+.
T Consensus 250 ~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 250 EAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 7765421 111121211 12345666655 355567889999999999999974
No 136
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.83 E-value=2.3e-09 Score=88.28 Aligned_cols=53 Identities=32% Similarity=0.678 Sum_probs=43.7
Q ss_pred eeeeEEEeecccCCCc--EEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 140 LIANRVINSKTLRDGS--TIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~--~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
.+|+|||+++...++. .+|||||+|++|++||||.++.-...+++.|+.|+.+
T Consensus 1 ~~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~r 55 (55)
T PF00385_consen 1 YEVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHHH
T ss_pred CEEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhCC
Confidence 3699999999776666 6999999999999999999885334458889998753
No 137
>KOG0951|consensus
Probab=98.81 E-value=1.1e-07 Score=116.56 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=95.6
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--------CCcEEEEeC-cchHHHHHHHHHHHCCCCeEEEEeCCchh
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--------KGPFLVSAP-LSTIINWEREFETWAPDFYVVTYVGDKDC 335 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--------~~p~LIV~P-~sll~qW~~E~~k~~p~~~vv~y~g~~~~ 335 (1001)
....+.+||.++|.|||-.|+..+..-...+.. ...+.-|+| .+|+..|...|.+|...+.+.|..-+.+.
T Consensus 323 ~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~ 402 (1674)
T KOG0951|consen 323 RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDS 402 (1674)
T ss_pred cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccc
Confidence 455689999999999999988776654443221 123567888 88999999999999876666554332222
Q ss_pred hhhhhccccccccccccCCCCccccCCCccccEEEecHHHHH---hh---HhhhcCCceeEEEEcCccccC-CcccHH--
Q psy10448 336 RIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELIT---ND---VALLGSIEWAVLVVDEAHRLK-SNQSKF-- 406 (1001)
Q Consensus 336 r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~---~d---~~~L~~~~w~~VIiDEAH~lK-N~~Sk~-- 406 (1001)
.... .......|++||.|... +. ..... -++++|+||.|.+- +.++..
T Consensus 403 ~l~~---------------------~qieeTqVIV~TPEK~DiITRk~gdraY~q--lvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 403 QLGK---------------------EQIEETQVIVTTPEKWDIITRKSGDRAYEQ--LVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred cchh---------------------hhhhcceeEEeccchhhhhhcccCchhHHH--HHHHHhhhhhhhcccccchHHHH
Confidence 1111 12334569999988652 11 11111 25689999999993 223322
Q ss_pred --HHHHhcc----cccceEeeecCCCCCCHHHHHHhhhccCCCCC
Q psy10448 407 --FKFLSGY----SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKF 445 (1001)
Q Consensus 407 --~~al~~l----~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f 445 (1001)
.+..+.. ...+-++||||- -|.+|..+.|..-.++.|
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCccccc
Confidence 2333332 234568999994 356777665543334433
No 138
>KOG0947|consensus
Probab=98.79 E-value=3.2e-07 Score=109.98 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=97.0
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCC
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAP 322 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p 322 (1001)
...++|-.+|++++--| ..+..+++|.-+..|||+.|=..+..-... .. .++--.|.-.+ .|=-++|+.-+.
T Consensus 293 ~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAialaq~h--~T-R~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALAQKH--MT-RTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred hCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHHHhh--cc-ceEecchhhhhccchHHHHHHhcc
Confidence 35689999999998555 488889999999999999977655433222 22 26777885555 445577776665
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH----hhhcCCceeEEEEcCccc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV----ALLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~----~~L~~~~w~~VIiDEAH~ 398 (1001)
+.. +..|+-.. .....++|+|-|++++.. ..+.. ...||+||.|.
T Consensus 366 Dvg--LlTGDvqi---------------------------nPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHY 414 (1248)
T KOG0947|consen 366 DVG--LLTGDVQI---------------------------NPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHY 414 (1248)
T ss_pred ccc--eeecceee---------------------------CCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeee
Confidence 544 44554321 234569999999998854 34444 45699999999
Q ss_pred cCCcc-cHHHHHHhcccccc--eEeeecCC
Q psy10448 399 LKSNQ-SKFFKFLSGYSIQN--KLLLTGTP 425 (1001)
Q Consensus 399 lKN~~-Sk~~~al~~l~~~~--rllLTGTP 425 (1001)
+-+.. .-.+.-+.-+-..| .++||||-
T Consensus 415 iND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 415 INDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred cccccccccceeeeeeccccceEEEEeccC
Confidence 96543 33444444333333 48999994
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.2e-06 Score=106.66 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=91.0
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC-
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP- 322 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p- 322 (1001)
.|..|...|.- |.........-.|+| ++|+|||.-.+.....+...+ +..+||+|+ .|+.|-.+-+.+++.
T Consensus 79 ~G~~~ws~QR~---WakR~~rg~SFaiiA-PTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGFRPWSAQRV---WAKRLVRGKSFAIIA-PTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCCCchHHHHH---HHHHHHcCCceEEEc-CCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 56788889987 444444444445555 999999987776666654443 448888995 456888888988873
Q ss_pred ----CCeEEEEeCCchhhh--hhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCc
Q psy10448 323 ----DFYVVTYVGDKDCRI--VLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEA 396 (1001)
Q Consensus 323 ----~~~vv~y~g~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEA 396 (1001)
...++ ||+.-..+. ...+. -....|||+|||-+.+.++...|.+.+|++|+||.+
T Consensus 152 ~~~~~~~~~-yh~~l~~~ekee~le~------------------i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDV 212 (1187)
T COG1110 152 AGSLDVLVV-YHSALPTKEKEEALER------------------IESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDV 212 (1187)
T ss_pred cCCcceeee-eccccchHHHHHHHHH------------------HhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccH
Confidence 23333 777532222 11110 234579999999999999999999999999999999
Q ss_pred ccc
Q psy10448 397 HRL 399 (1001)
Q Consensus 397 H~l 399 (1001)
.-+
T Consensus 213 DA~ 215 (1187)
T COG1110 213 DAI 215 (1187)
T ss_pred HHH
Confidence 874
No 140
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=3e-07 Score=112.79 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=87.6
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 320 (1001)
.|+..++-|+-|.--| +.|.|.-+.||-|||++|...+......+ ..+-||+|+..+ .+|...+-+|
T Consensus 79 lGm~~ydVQliGg~~L------h~G~iaEM~TGEGKTLvA~l~a~l~al~G---~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 79 MGMRHFDVQLIGGMTL------HEGKIAEMRTGEGKTLVGTLAVYLNALSG---KGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred hCCCcchhHHHhhhHh------ccCccccccCCCCChHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4788889999987433 45789999999999997765544333232 347888997766 3466666655
Q ss_pred CCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHH-----HhhH----hhhcCCceeEE
Q psy10448 321 APDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELI-----TNDV----ALLGSIEWAVL 391 (1001)
Q Consensus 321 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l-----~~d~----~~L~~~~w~~V 391 (1001)
. ++.|.+..++....... ....++|++.|...+ +.+. ...-.....++
T Consensus 150 l-Gl~v~~i~~~~~~~err----------------------~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~a 206 (913)
T PRK13103 150 L-GLSVGIVTPFQPPEEKR----------------------AAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFA 206 (913)
T ss_pred c-CCEEEEECCCCCHHHHH----------------------HHhcCCEEEEcccccccchhhccceechhhhccccccee
Confidence 5 56777666543322211 122467888888876 2221 11223567899
Q ss_pred EEcCccccCCcccHHHHHHhcccccceEeeecCC
Q psy10448 392 VVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTP 425 (1001)
Q Consensus 392 IiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTP 425 (1001)
||||+|.+-=. .+..-|++||.+
T Consensus 207 IVDEvDsiLID-----------EArtPLIISg~~ 229 (913)
T PRK13103 207 VIDEVDSILID-----------EARTPLIISGQA 229 (913)
T ss_pred Eechhhheecc-----------ccCCceeecCCC
Confidence 99999987322 233457787753
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=1.6e-06 Score=105.49 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=76.1
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC--------EEE
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD--------TVI 714 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad--------~VI 714 (1001)
|.|.+...-+.|...|...|+++..++.... ++++.|=. +++..+ .+.|+|..+|.|.|+.-.. +||
T Consensus 431 VgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~G--aVTIATNMAGRGTDI~Lg~~V~~~GGLhVI 505 (925)
T PRK12903 431 IGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKG--AITIATNMAGRGTDIKLSKEVLELGGLYVL 505 (925)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCC--eEEEecccccCCcCccCchhHHHcCCcEEE
Confidence 9999999999999999999999999988633 34443332 455445 5899999999999987544 899
Q ss_pred EecCCCCcchhhhhhhhhhhccCccc
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
....+-|-....|..||++|.|....
T Consensus 506 gTerheSrRIDnQLrGRaGRQGDpGs 531 (925)
T PRK12903 506 GTDKAESRRIDNQLRGRSGRQGDVGE 531 (925)
T ss_pred ecccCchHHHHHHHhcccccCCCCCc
Confidence 99999999989999999999997653
No 142
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.60 E-value=7.6e-07 Score=110.81 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=100.2
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP 322 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p 322 (1001)
..++.|-++|.+++.-| ..+.+++++..+|.|||+.+-.++..-+..+. + +.-..| ++|..|=-++|..-+.
T Consensus 115 ~~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q--r-viYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 115 EYPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ--R-VIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred hCCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC--c-eEeccchhhhhhhHHHHHHHHhh
Confidence 46899999999998555 48899999999999999999988776655543 2 777889 6666776677655443
Q ss_pred CC--eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccc
Q psy10448 323 DF--YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 323 ~~--~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~ 398 (1001)
+. .+-++.|+... .....|+++|-|.+++..- .-...+...||+||.|.
T Consensus 188 dv~~~vGL~TGDv~I---------------------------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy 240 (1041)
T COG4581 188 DVADMVGLMTGDVSI---------------------------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY 240 (1041)
T ss_pred hhhhhccceecceee---------------------------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee
Confidence 22 23445554321 2244577777798887531 11223456799999999
Q ss_pred cCCcc-cHHHHHHh-ccccc-ceEeeecCC
Q psy10448 399 LKSNQ-SKFFKFLS-GYSIQ-NKLLLTGTP 425 (1001)
Q Consensus 399 lKN~~-Sk~~~al~-~l~~~-~rllLTGTP 425 (1001)
+.... .-.+..+. .+... .-++||||-
T Consensus 241 i~D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 241 IGDRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred ccccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 97654 34444433 33333 679999994
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=1.6e-06 Score=108.38 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=57.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFET 319 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k 319 (1001)
.+||.|.+...-+......+.++++-.++|+|||+.+|+.+.......+...+++..+. .+-+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999877766554332233555555 5667899999988
No 144
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.53 E-value=4.2e-06 Score=105.50 Aligned_cols=122 Identities=18% Similarity=0.107 Sum_probs=78.1
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc--CCEEEEecCC
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT--ADTVIIYDSD 719 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~--Ad~VIi~D~~ 719 (1001)
+|+..+.+++..+.+.|....+.. ...|... .|.+++++|+.++.. +|+.|.+..+|||++. +..|||.-.|
T Consensus 651 LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 651 LVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred EEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCCCCCCCCeEEEEEecCC
Confidence 377777888888888887655443 4555332 367799999875443 7888999999999963 5667777766
Q ss_pred -CCcch-hhhhhhhhhh-ccC-ccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 720 -WNPHN-DIQAFSRAHR-IGQ-QNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 720 -WNP~~-~iQriGRi~R-iGq-~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
.+|.. ++|++-+..+ .|. ....+.|..|-. .-.|++||.-|--..+-|.|
T Consensus 725 F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~i-----------klkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 725 FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTIL-----------RLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHH-----------HHHHHhcccccCCCCcEEEE
Confidence 44533 3343333322 232 111233332222 56799999999888887654
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.52 E-value=7.6e-06 Score=99.92 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=104.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCe
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFY 325 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~ 325 (1001)
..|-+-|..+++-+..........+|.-.+|.|||-.-+-++...+..+ +-+||++| .++..|-...|+..++ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 4688899999998876653345689999999999999999998888776 34899999 7888998888887775 66
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc--CCcc
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL--KSNQ 403 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l--KN~~ 403 (1001)
+.+++..-........ |.. .......|||-|-..+.--.. +-.+|||||=|.- |-.+
T Consensus 273 v~vlHS~Ls~~er~~~----W~~------------~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~ 331 (730)
T COG1198 273 VAVLHSGLSPGERYRV----WRR------------ARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQED 331 (730)
T ss_pred hhhhcccCChHHHHHH----HHH------------HhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCc
Confidence 7777654333322211 111 123456799999877754332 3468999999974 3333
Q ss_pred cHHHHH-----Hh-cccccceEeeecCCC
Q psy10448 404 SKFFKF-----LS-GYSIQNKLLLTGTPL 426 (1001)
Q Consensus 404 Sk~~~a-----l~-~l~~~~rllLTGTPl 426 (1001)
+..+.+ ++ ....--.+|-||||-
T Consensus 332 ~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 332 GPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 222211 11 122334577899993
No 146
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.50 E-value=1.5e-06 Score=108.07 Aligned_cols=118 Identities=12% Similarity=0.120 Sum_probs=69.5
Q ss_pred cEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCCcccHHHHH--Hhc-ccccceEeeecCCCCC--CHHHHHHhhhc
Q psy10448 367 HVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKSNQSKFFKF--LSG-YSIQNKLLLTGTPLQN--NLEELFHLLNF 439 (1001)
Q Consensus 367 dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN~~Sk~~~a--l~~-l~~~~rllLTGTPlqN--~l~EL~~LL~f 439 (1001)
.|++.|...+..|.- .+..-....|||||||++....+-.+-+ .+. -+..+..++|+.|-.. ....+-..+.-
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk~ 88 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMRN 88 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHHH
Confidence 489999999988862 3334457899999999996554433322 222 2456789999999642 22222222222
Q ss_pred cCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCC--ceEEEEEEcCCHHHHHHHHHHHH
Q psy10448 440 LTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPS--KSEFIVRVELSPMQKKYYKYILT 512 (1001)
Q Consensus 440 L~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~--k~e~~v~v~Ls~~Q~~~Y~~il~ 512 (1001)
|..... ++.-|.-.+|...|-+ .....+.|+|++.-+++...+..
T Consensus 89 L~i~~v----------------------------~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~ 135 (814)
T TIGR00596 89 LFLRHV----------------------------YLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILE 135 (814)
T ss_pred hCcCeE----------------------------EEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHHHH
Confidence 221110 1112334445444433 45667889999988887766643
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.48 E-value=5.6e-05 Score=97.11 Aligned_cols=125 Identities=20% Similarity=0.236 Sum_probs=79.5
Q ss_pred EEEeccHHHHHHHHHHHhhCCC--eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC--CEEEEec
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGY--KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA--DTVIIYD 717 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi--~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A--d~VIi~D 717 (1001)
+||..+..++..+.+.|..... .+..+.-+++...|.+++++|+.... .+|+.+.+..+|||++.. ..|||.-
T Consensus 756 LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~---~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 756 LVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK---AILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred EEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC---eEEEecCcccCccccCCCceEEEEEec
Confidence 3777777888888888865422 13333333333458999999987543 367888999999999874 8899999
Q ss_pred CCC-Ccch-hhhhhhh-hhhccCcc-ccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 718 SDW-NPHN-DIQAFSR-AHRIGQQN-KYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 718 ~~W-NP~~-~iQriGR-i~RiGq~~-~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
.|+ +|.. +.|+.-+ .-+.|... .-..|..|-. .-.|++||+-|-.+.+-|.|
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~-----------~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVL-----------RFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHH-----------HHHhhhhhhcccCCceEEEE
Confidence 887 6653 3443322 22333211 1111111111 34799999999999887644
No 148
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.46 E-value=1e-06 Score=109.49 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=90.3
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHH---------HHHCCC--CeEEEEeCCc--
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREF---------ETWAPD--FYVVTYVGDK-- 333 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~---------~k~~p~--~~vv~y~g~~-- 333 (1001)
.+..+.++||+|||.+++..|..|....... .||||||.. +......-+ ...+++ ....+|.+.+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~-~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLF-KFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCc-EEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 4678899999999999999999998876554 499999953 333333222 222222 3344444322
Q ss_pred -hhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--h------hc--CCcee-------EEEEcC
Q psy10448 334 -DCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--L------LG--SIEWA-------VLVVDE 395 (1001)
Q Consensus 334 -~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~------L~--~~~w~-------~VIiDE 395 (1001)
..|.........|.... .......+|+|+|-+.+.++.. . +. ...|+ +||+||
T Consensus 139 k~gr~~~~~~i~~Fa~~~---------~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDE 209 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKAS---------RQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDE 209 (986)
T ss_pred ccccccChHHHHHHHhcc---------ccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEEC
Confidence 11111000000000000 0112257899999999976421 1 11 12332 899999
Q ss_pred ccccCCcccHHHHHHhcccccceEeeecCCC
Q psy10448 396 AHRLKSNQSKFFKFLSGYSIQNKLLLTGTPL 426 (1001)
Q Consensus 396 AH~lKN~~Sk~~~al~~l~~~~rllLTGTPl 426 (1001)
+|++.. ..+.+.++..++..+.+.-|||--
T Consensus 210 Ph~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 210 PHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 999954 345778899999999999999963
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.44 E-value=5.6e-05 Score=91.73 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC-----CCCeE
Q psy10448 253 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA-----PDFYV 326 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~-----p~~~v 326 (1001)
|.+-+.++...+.++...++-..+|+|||+..+..+....... ..+++||++| ..|..|+.+++.... ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 7777888888888888888899999999998887765544321 2357999999 566788888876654 24555
Q ss_pred EEEeCC
Q psy10448 327 VTYVGD 332 (1001)
Q Consensus 327 v~y~g~ 332 (1001)
++..|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 555553
No 150
>KOG0948|consensus
Probab=98.43 E-value=4.9e-06 Score=97.87 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=92.9
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDF 324 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~ 324 (1001)
.++|-|+|..+|. +..++..+++..-+..|||+.|-..|+.-++.. ..++--.| ++|-.|=.+|+..-+.+.
T Consensus 127 PF~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DV 199 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDV 199 (1041)
T ss_pred CcccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhccc
Confidence 4789999999984 456888899999999999999875554443332 23677778 455556667776654442
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH----hhhcCCceeEEEEcCccccC
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV----ALLGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~----~~L~~~~w~~VIiDEAH~lK 400 (1001)
-...|+-. -......+|+|-+.+++.. ..+..+.| ||+||.|.++
T Consensus 200 --GLMTGDVT---------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMR 248 (1041)
T KOG0948|consen 200 --GLMTGDVT---------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMR 248 (1041)
T ss_pred --ceeeccee---------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhcc
Confidence 23334321 1234458999999998754 44555555 9999999998
Q ss_pred Cccc-HHHH-HHhcc-cccceEeeecCC
Q psy10448 401 SNQS-KFFK-FLSGY-SIQNKLLLTGTP 425 (1001)
Q Consensus 401 N~~S-k~~~-al~~l-~~~~rllLTGTP 425 (1001)
...- -.|. .+.-+ ..-+-+.||||-
T Consensus 249 DkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 249 DKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred ccccceeeeeeEEeccccceEEEEeccC
Confidence 6542 2222 22223 334558899993
No 151
>KOG0329|consensus
Probab=98.40 E-value=1.8e-06 Score=89.78 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=77.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCC--cEEEEeCc-chHHHHHHHH---HHHCC
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKG--PFLVSAPL-STIINWEREF---ETWAP 322 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~--p~LIV~P~-sll~qW~~E~---~k~~p 322 (1001)
+-.-|.+.+-..+ -+..++...-.|+|||...+ +..+..-.+..| .+||+|-. .+.-|-..|. .++.|
T Consensus 65 psevqhecipqai----lgmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 65 PSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred chHhhhhhhhHHh----hcchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 3345777764433 34456777788999996532 333333344444 36888874 4556766665 55669
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH--hhhcCCceeEEEEcCcccc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV--ALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~--~~L~~~~w~~VIiDEAH~l 399 (1001)
+.++.++.|.-....... ....-.+|++.|...+.... ..+.-.+....|+|||..+
T Consensus 139 ~vkvaVFfGG~~Ikkdee--------------------~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDEE--------------------LLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred CceEEEEEcceeccccHH--------------------HHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 999999998653321110 11125689999999876543 2344445668899999875
No 152
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.36 E-value=4.4e-07 Score=74.55 Aligned_cols=51 Identities=31% Similarity=0.726 Sum_probs=40.7
Q ss_pred CceeeeEEEeecccCC-CcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHH
Q psy10448 138 EWLIANRVINSKTLRD-GSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYN 190 (1001)
Q Consensus 138 ~~~~~~ri~~~~~~~~-~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~ 190 (1001)
+|. |++|++++.... +..+|||||+|++|.+||||..+. +......+..|.
T Consensus 2 e~~-ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~-l~~~~~~i~~~~ 53 (55)
T cd00024 2 EYE-VEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEEN-LEDCKELIDEFK 53 (55)
T ss_pred Cce-EeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHH-hCchHHHHHHHH
Confidence 444 499999997665 789999999999999999998775 333366777775
No 153
>KOG0949|consensus
Probab=98.33 E-value=3.8e-05 Score=92.95 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=112.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC--CC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA--PD 323 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~--p~ 323 (1001)
+.+-.+|.+-+ .....+..+++...+-.|||..+--++...++... .+.++-|+| .+++.|-..++..-+ +.
T Consensus 510 F~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-SDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-CCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 55667888754 45567888999999999999999999988887765 456899999 677888777664322 22
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh-----hcCCceeEEEEcCccc
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL-----LGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~-----L~~~~w~~VIiDEAH~ 398 (1001)
+. .|-.-.....+++. -....+.|+||-.+.+.+..-. ...-+..+||+||.|.
T Consensus 585 ~~----rg~sl~g~ltqEYs-----------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~ 643 (1330)
T KOG0949|consen 585 FL----RGVSLLGDLTQEYS-----------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHL 643 (1330)
T ss_pred cc----cchhhHhhhhHHhc-----------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhh
Confidence 21 11111122222221 1234678999999998775322 1112457999999999
Q ss_pred cCCcc-cHHHHHHhcccccceEeeecCCCCCCHHHHHHhhh
Q psy10448 399 LKSNQ-SKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLN 438 (1001)
Q Consensus 399 lKN~~-Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~ 438 (1001)
+.|.. +..+..+..+-..--++|||| ++|+..++..++
T Consensus 644 iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 644 IGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred ccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 98865 667777776666677999999 577777776665
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.29 E-value=1.2e-05 Score=100.10 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=84.2
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCe-EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc--CCEEEEe
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYK-YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT--ADTVIIY 716 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~-~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~--Ad~VIi~ 716 (1001)
+++||..+-.++..+.+.|...... .....|..+ +..+++.|.+.... .|++.+....+|||++. +..|||.
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeEEEEE
Confidence 4558888888889989988876653 444555544 45899999987664 58999999999999988 5889998
Q ss_pred cCCCC-cchh-hhhhhhhhh-cc-CccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 717 DSDWN-PHND-IQAFSRAHR-IG-QQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 717 D~~WN-P~~~-iQriGRi~R-iG-q~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
-.|+- |... .++..+..+ .| .......+..|-. .-.||+||+.|--+.+-|.|
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~-----------~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVI-----------KLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHH-----------HHHHhhccccccCCCceEEE
Confidence 88876 3322 222233222 22 1122222222222 56799999999777777665
No 155
>KOG0349|consensus
Probab=98.28 E-value=1.5e-06 Score=96.05 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=86.9
Q ss_pred CceeEEEeccHHHHHHHHHHHhhC---CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEE
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGE---GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVI 714 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~---gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VI 714 (1001)
-+|+||||.-..-.|-|++++.++ .|.++.++|...+.+|.+.+++|...+. .|||+|++++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dv---kflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDV---KFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCe---EEEEEehhhhccccccCCceEE
Confidence 468999999999999999999987 4678889999999999999999988654 4999999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhhcc
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiG 736 (1001)
+...|-....|++|+||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999877643
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.24 E-value=4.9e-06 Score=106.21 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=92.0
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDI 344 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~ 344 (1001)
.+.+|++.+-.|+|||++++-++..+..... ...++|||- .-|-.|-.++|..+........ ...+...++..-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~-~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPK-NPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccC-CCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH-
Confidence 4568999999999999999988887777633 333777777 5566899999999865433322 122222222110
Q ss_pred ccccccccCCCCccccCCCccccEEEecHHHHHhhHhh----hcCCceeEEEEcCccccCCcccHHHHHHhc-ccccceE
Q psy10448 345 SWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL----LGSIEWAVLVVDEAHRLKSNQSKFFKFLSG-YSIQNKL 419 (1001)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~----L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~-l~~~~rl 419 (1001)
....-.|+|||-+.|...... ....+.-+||+|||||- ......+.++. ++...-+
T Consensus 347 -----------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~~a~~~ 407 (962)
T COG0610 347 -----------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALKKAIFI 407 (962)
T ss_pred -----------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhccceEE
Confidence 001335999999998875532 23445679999999984 33444444433 4556779
Q ss_pred eeecCCCCCC
Q psy10448 420 LLTGTPLQNN 429 (1001)
Q Consensus 420 lLTGTPlqN~ 429 (1001)
+.||||+...
T Consensus 408 gFTGTPi~~~ 417 (962)
T COG0610 408 GFTGTPIFKE 417 (962)
T ss_pred EeeCCccccc
Confidence 9999998654
No 157
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.23 E-value=9e-06 Score=99.68 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=48.5
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEccCC-HHHHHHHHHHhcCCCCCcEEEEEecccccccccc
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGNIT-GSMRQESIDRFNAPGASQFVFLLSTRSGGLGINL 707 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s-~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL 707 (1001)
|-+.++..-+.|...|...|+++..++.... .+.=..+|.+ ++..+ .+-|+|..+|.|.|+
T Consensus 429 IgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIATNMAGRGTDI 490 (870)
T CHL00122 429 IGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIATNMAGRGTDI 490 (870)
T ss_pred EeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEeccccCCCcCe
Confidence 9999999999999999999999999998742 2334455654 44444 489999999999775
No 158
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=98.19 E-value=1.2e-06 Score=84.13 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=39.3
Q ss_pred CcchhccCCceeeccchHHHHHHHhhhhccccccccCCChhhhhcccchHHHHHHHh
Q psy10448 928 PPLLARVGGNIEVLNQLEELLSDMKSDVSRLPATLARIPPVAQRLHMSERSILSRLA 984 (1001)
Q Consensus 928 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1001)
|||||++||+++||||+-.+++.|.+.|||+++ -.++-.|++.+|-
T Consensus 26 pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~-----------~~f~~~w~~~~Lr 71 (145)
T PF06461_consen 26 PPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGM-----------GAFDWKWFVPRLR 71 (145)
T ss_pred CCccccCCCceEEeccCHHHHHHHHHHHHHHCc-----------CcccchHHhhhhc
Confidence 999999999999999999999999999999998 2335555555554
No 159
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.17 E-value=1.3e-05 Score=78.23 Aligned_cols=129 Identities=17% Similarity=0.102 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHH-HHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLY-SLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDI 344 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~-~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~ 344 (1001)
.+.--+|-.-+|.|||-..+--+. ..+.. .+.+||++|...+. +|+.+...+..+.. ....-.+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~---~~rvLvL~PTRvva---~em~~aL~~~~~~~-~t~~~~~-------- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR---RLRVLVLAPTRVVA---EEMYEALKGLPVRF-HTNARMR-------- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT---T--EEEEESSHHHH---HHHHHHTTTSSEEE-ESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc---cCeEEEecccHHHH---HHHHHHHhcCCccc-Cceeeec--------
Confidence 444567888999999998776433 23332 34599999987663 66666665555332 2111100
Q ss_pred ccccccccCCCCccccCCCccccEEEecHHHHHhhH-hhhcCCceeEEEEcCccccCCcccHHHHHH-hcc---cccceE
Q psy10448 345 SWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV-ALLGSIEWAVLVVDEAHRLKSNQSKFFKFL-SGY---SIQNKL 419 (1001)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~-~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al-~~l---~~~~rl 419 (1001)
.....--|-+++|.++.... ......+|+++|+||||-. ++.|-..+.. ..+ .....+
T Consensus 68 ----------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i 130 (148)
T PF07652_consen 68 ----------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVI 130 (148)
T ss_dssp -------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEE
T ss_pred ----------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEE
Confidence 11223347889999887643 3444568999999999984 4444444332 222 112578
Q ss_pred eeecCCC
Q psy10448 420 LLTGTPL 426 (1001)
Q Consensus 420 lLTGTPl 426 (1001)
++||||-
T Consensus 131 ~mTATPP 137 (148)
T PF07652_consen 131 FMTATPP 137 (148)
T ss_dssp EEESS-T
T ss_pred EEeCCCC
Confidence 9999994
No 160
>KOG0950|consensus
Probab=98.08 E-value=9.1e-05 Score=90.27 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=94.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
.++++|.+.+. ..+...++++|.+-+++-|||+.+=.++....-.. .+.+|.+.|- +.+.-=..++..+.- ++
T Consensus 223 ~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHHHHhhhhhhccccCC
Confidence 45556666553 22234778999999999999998766655433222 2336777784 444333334444432 34
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcC----CceeEEEEcCccccC
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGS----IEWAVLVVDEAHRLK 400 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~----~~w~~VIiDEAH~lK 400 (1001)
.|-.|.|..... .....-+|.|+|-|........+-. -...+|||||-|.+.
T Consensus 299 ~ve~y~g~~~p~------------------------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 299 PVEEYAGRFPPE------------------------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred cchhhcccCCCC------------------------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 444454322110 2233557999999988877654432 134689999999985
Q ss_pred Ccc--cH----HHHHHhcccc--cceEeeecCCCCCCHHHHHHhh-hccCCCCC
Q psy10448 401 SNQ--SK----FFKFLSGYSI--QNKLLLTGTPLQNNLEELFHLL-NFLTPEKF 445 (1001)
Q Consensus 401 N~~--Sk----~~~al~~l~~--~~rllLTGTPlqN~l~EL~~LL-~fL~p~~f 445 (1001)
... .- +.+.+..-.. -..+++|||-.+| .+|...+ .|+.+..|
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~f 406 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRF 406 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheeccc
Confidence 332 22 2222222222 2369999997544 3443333 34444433
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.06 E-value=0.00034 Score=86.97 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHH-HHHHHhcCCCCCcEEEEEeccccccccccc------
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQ-ESIDRFNAPGASQFVFLLSTRSGGLGINLA------ 708 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq-~~Id~Fn~~~~~~~v~LlStragg~GINL~------ 708 (1001)
..+..|||-+.++..-+.|...|...|+++..++.... +++ .+|.+ ++..+ .+-|+|..+|.|.|+.
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~--AG~~G--aVTIATNMAGRGTDIkLg~~V~ 699 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAE--AGQPG--TVTIATNMAGRGTDIKLSPEVK 699 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHh--cCCCC--cEEEeccCcCCCcCcccchhhH
Confidence 34556669999999999999999999999988877633 333 34433 33344 4899999999998875
Q ss_pred --cCCEEEEecCCCCcchhhhhhhhhhhccCcc
Q psy10448 709 --TADTVIIYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 709 --~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
..=+||.-..+-|.....|-.||++|.|...
T Consensus 700 e~GGL~VIgTerheSrRID~QLrGRaGRQGDPG 732 (1112)
T PRK12901 700 AAGGLAIIGTERHESRRVDRQLRGRAGRQGDPG 732 (1112)
T ss_pred HcCCCEEEEccCCCcHHHHHHHhcccccCCCCC
Confidence 2246777777777777777777777777554
No 162
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.04 E-value=4e-05 Score=85.45 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=53.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCC---CcEEEEeCc-chHHHHHHHHHHH
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCK---GPFLVSAPL-STIINWEREFETW 320 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~---~p~LIV~P~-sll~qW~~E~~k~ 320 (1001)
.+.||.|.+-+.-+...+..+..+|+-..+|+|||+..+..+.......... .+++++++. +++.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4579999998888888888999999999999999999988775544332221 256777774 3445545556554
No 163
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.04 E-value=4e-05 Score=85.45 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=53.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCC---CcEEEEeCc-chHHHHHHHHHHH
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCK---GPFLVSAPL-STIINWEREFETW 320 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~---~p~LIV~P~-sll~qW~~E~~k~ 320 (1001)
.+.||.|.+-+.-+...+..+..+|+-..+|+|||+..+..+.......... .+++++++. +++.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4579999998888888888999999999999999999988775544332221 256777774 3445545556554
No 164
>KOG1513|consensus
Probab=98.04 E-value=0.00013 Score=86.31 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=131.0
Q ss_pred CCcccHHHHHHHHHHHHhhc------CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWG------QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~------~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
...|-.-|+|+|-|...... ..-|.+|+|.-|.||-.+...+|...+-.+.. +...|-|..-|...=++.+..
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK-rAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK-RALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc-eeEEEEeccccccchhhchhh
Confidence 46788899999988754432 23367889999999988777777665555543 335555666666666677766
Q ss_pred HC-CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--------hhcC-Cce-
Q psy10448 320 WA-PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--------LLGS-IEW- 388 (1001)
Q Consensus 320 ~~-p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--------~L~~-~~w- 388 (1001)
.. +.+.|.....-+ |. +...-.+...+-.|+++||..+.-+.. .+.. .+|
T Consensus 341 igA~~I~V~alnK~K------------Ya-------kIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~ 401 (1300)
T KOG1513|consen 341 IGATGIAVHALNKFK------------YA-------KISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWC 401 (1300)
T ss_pred cCCCCccceehhhcc------------cc-------cccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHh
Confidence 53 232222211100 00 000011344566799999998865321 1111 234
Q ss_pred -----eEEEEcCccccCC-------cccHHHHHHhc----ccccceEeeecCCCCCCHHHHHHhhh--cc-CCCCCCChh
Q psy10448 389 -----AVLVVDEAHRLKS-------NQSKFFKFLSG----YSIQNKLLLTGTPLQNNLEELFHLLN--FL-TPEKFNDLT 449 (1001)
Q Consensus 389 -----~~VIiDEAH~lKN-------~~Sk~~~al~~----l~~~~rllLTGTPlqN~l~EL~~LL~--fL-~p~~f~~~~ 449 (1001)
.+||+||||+.|| ..++.-+.+.. +...+.+.-|||--... ..+..+.. +- ....|+++.
T Consensus 402 Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEP-rNMaYM~RLGlWGegtaf~eF~ 480 (1300)
T KOG1513|consen 402 GEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEP-RNMAYMVRLGLWGEGTAFPEFE 480 (1300)
T ss_pred hhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCc-chhhhhhhhccccCCCcCccHH
Confidence 4899999999998 33455555544 35556778888854321 11222221 11 223567777
Q ss_pred HHHHHHcccc--HHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHH
Q psy10448 450 SFQAEFADIS--KEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYI 510 (1001)
Q Consensus 450 ~F~~~f~~~~--~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~i 510 (1001)
+|......-. ..+.+ .+--.++...+-|-. .+-.-...+-.|+|+++-++.|+..
T Consensus 481 eFi~AvEkRGvGAMEIV-AMDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 481 EFIHAVEKRGVGAMEIV-AMDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred HHHHHHHhcCCceeeee-ehhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHH
Confidence 7766543210 00000 000111111111100 2344567788899999999999754
No 165
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.01 E-value=3.7e-06 Score=68.93 Aligned_cols=49 Identities=27% Similarity=0.679 Sum_probs=39.6
Q ss_pred eeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHh
Q psy10448 142 ANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNK 191 (1001)
Q Consensus 142 ~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~ 191 (1001)
|+||++++...++...|||||+|++|.++||+..+. +......+..|..
T Consensus 4 v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~-l~~~~~~v~~~~~ 52 (55)
T smart00298 4 VEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEEN-LLNCSKKLDNYKK 52 (55)
T ss_pred hheeeeeeecCCCcEEEEEEECCCCCccCceeeHHH-HHHHHHHHHHHHH
Confidence 899999985567789999999999999999998764 3335666777664
No 166
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.00 E-value=2.1e-05 Score=85.76 Aligned_cols=100 Identities=23% Similarity=0.289 Sum_probs=67.4
Q ss_pred HHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCC
Q psy10448 679 ESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWN 758 (1001)
Q Consensus 679 ~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WN 758 (1001)
...+.|+++... |+++ ++||+.||+|++-..+-+ | .--.-|++++.|+
T Consensus 52 ~e~~~F~~g~k~--v~ii-s~AgstGiSlHAd~~~~n-----------q------------------r~Rv~i~le~pws 99 (278)
T PF13871_consen 52 AEKQAFMDGEKD--VAII-SDAGSTGISLHADRRVKN-----------Q------------------RRRVHITLELPWS 99 (278)
T ss_pred HHHHHHhCCCce--EEEE-ecccccccchhccccCCC-----------C------------------CceEEEEeeCCCC
Confidence 456799997544 4555 699999999997322110 0 0012234445555
Q ss_pred CcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccC
Q psy10448 759 PHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRP 810 (1001)
Q Consensus 759 P~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~ 810 (1001)
....+|.+||+||.||..+..+..+++.-..|.+......+|+.-..+...+
T Consensus 100 ad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 100 ADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHHHHHHHhhccccccC
Confidence 5588888888888888877554456666678999999999999877776644
No 167
>KOG0920|consensus
Probab=97.88 E-value=0.0029 Score=78.86 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=80.2
Q ss_pred ceeEEEeccHHHHHHHHHHHhhC-------CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGE-------GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD 711 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~-------gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad 711 (1001)
.-+|||..-..-+..+...|..+ .+-...++++++..+.+.+ |+.+..+..-++++|..+..+|.+.++-
T Consensus 414 GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdDVv 490 (924)
T KOG0920|consen 414 GAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDDVV 490 (924)
T ss_pred ceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccCeE
Confidence 35679988887777777777532 2456778999998766654 6666666557999999999999998875
Q ss_pred EEEE----ecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 712 TVII----YDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 712 ~VIi----~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
.||- -.-.|+|. .|+.+.. +.|-.-++-.|+.|||+| ..+=.+|+|+++.
T Consensus 491 yVIDsG~~Ke~~yD~~------------------~~~s~l~-----~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 491 YVIDSGLVKEKSYDPE------------------RKVSCLL-----LSWVSKANAKQRRGRAGR---VRPGICYHLYTRS 544 (924)
T ss_pred EEEecCeeeeeeeccc------------------CCcchhh-----eeeccccchHHhcccccC---ccCCeeEEeechh
Confidence 5552 22334444 2222222 223333466666666655 4566788888775
Q ss_pred CHHHH
Q psy10448 788 SVEER 792 (1001)
Q Consensus 788 TiEE~ 792 (1001)
-.+--
T Consensus 545 ~~~~~ 549 (924)
T KOG0920|consen 545 RYEKL 549 (924)
T ss_pred hhhhc
Confidence 54443
No 168
>KOG0923|consensus
Probab=97.87 E-value=0.00064 Score=79.74 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcc-hhhhhhhhhhhccCcccccc
Q psy10448 665 YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPH-NDIQAFSRAHRIGQQNKYIN 743 (1001)
Q Consensus 665 ~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~-~~iQriGRi~RiGq~~~~LN 743 (1001)
++-|..+.+.+...++ |...+.+..-++++|..+...|.+.....|| ||.+.-+ .|. -|.|
T Consensus 509 v~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsyn------prtG------- 570 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYN------PRTG------- 570 (902)
T ss_pred EeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcC------CCcC-------
Confidence 4556677776554443 5554444446788899999988877766655 6665442 110 0111
Q ss_pred ccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHH
Q psy10448 744 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEER 792 (1001)
Q Consensus 744 L~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~ 792 (1001)
-.-.+.+|. .-+.-.|+-||| |.+-+-..|||.|.-+++-.
T Consensus 571 ----mesL~v~pi-SKAsA~QRaGRA---GRtgPGKCfRLYt~~aY~~e 611 (902)
T KOG0923|consen 571 ----MESLLVTPI-SKASANQRAGRA---GRTGPGKCFRLYTAWAYEHE 611 (902)
T ss_pred ----ceeEEEeee-chhhhhhhcccc---CCCCCCceEEeechhhhhhh
Confidence 112223332 122334444444 44557779999997665543
No 169
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.77 E-value=0.0013 Score=80.47 Aligned_cols=91 Identities=11% Similarity=0.202 Sum_probs=67.6
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc--CCEEEEe-
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT--ADTVIIY- 716 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~--Ad~VIi~- 716 (1001)
++.|||....+.+++++++...+.++..++|..+..+ ++.+ ..+-+++=|.+...|+++-. -|.|..|
T Consensus 284 nIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W-----~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 284 NICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW-----KKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred cEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc-----cceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 4449999999999999999999999999988766542 2222 22346777888889998865 4767766
Q ss_pred -cCCCCcc--hhhhhhhhhhhccCcc
Q psy10448 717 -DSDWNPH--NDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 717 -D~~WNP~--~~iQriGRi~RiGq~~ 739 (1001)
.....|. ...|.+||+-.+....
T Consensus 355 k~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 355 KPMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred cCCCCCCcHHHHHHHHHHHHhhccCe
Confidence 4344455 3699999999888664
No 170
>KOG0922|consensus
Probab=97.76 E-value=0.0017 Score=76.98 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=77.9
Q ss_pred eEEEeccHHHHHHHHHHHhhC----C--C--eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 641 SIEFYNMTKMLDILEDYLDGE----G--Y--KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~~----g--i--~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
++||-.-...++...+.|... + . -+.-+.|+++.++..++ |...+.+..-+++||..+...|.+.....
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~Y 337 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIRY 337 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceEE
Confidence 447776666555555555432 1 1 24568999998765544 65555444568999999999998888766
Q ss_pred EEEecCCCCcc-hhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHH
Q psy10448 713 VIIYDSDWNPH-NDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEE 791 (1001)
Q Consensus 713 VIi~D~~WNP~-~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE 791 (1001)
|| |+-+.-. .|.++ ++-+..+.+ |-.-.||.-|++|-|.+.+..+|||.++.-+++
T Consensus 338 VV--DsG~vK~~~y~p~----------------~g~~~L~v~-----~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 338 VV--DSGFVKQKKYNPR----------------TGLDSLIVV-----PISKASANQRAGRAGRTGPGKCYRLYTESAYDK 394 (674)
T ss_pred EE--cCCceEEEeeccc----------------cCccceeEE-----echHHHHhhhcccCCCCCCceEEEeeeHHHHhh
Confidence 65 5543222 00000 000111111 125678888899999999999999999987733
No 171
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.74 E-value=0.0014 Score=80.82 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=79.0
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 320 (1001)
.|+..++-|+-|.--| +.|.|.-+.||=|||++|...+....- ..+.+-||+++.-+ ..|...+.+|
T Consensus 82 lG~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~atlpaylnAL---~GkgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVATLPSYLNAL---TGKGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCCCcchhHHHhhhhh------cCCceeeecCCCChhHHHHHHHHHHhh---cCCCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 5788889999987433 567899999999999986644432221 22347888886655 5799999999
Q ss_pred CCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHH-----HhhH----hhhcCCceeEE
Q psy10448 321 APDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELI-----TNDV----ALLGSIEWAVL 391 (1001)
Q Consensus 321 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l-----~~d~----~~L~~~~w~~V 391 (1001)
. ++.|-+..+....... .....+||+.+|...+ +.+. .......+.++
T Consensus 153 L-GLtvg~i~~~~~~~er----------------------r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~fa 209 (939)
T PRK12902 153 L-GLSVGLIQQDMSPEER----------------------KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYC 209 (939)
T ss_pred h-CCeEEEECCCCChHHH----------------------HHhcCCCeEEecCCcccccchhhhhcccccccccCccceE
Confidence 8 6666655443222111 1233556776666555 2222 11234567899
Q ss_pred EEcCcccc
Q psy10448 392 VVDEAHRL 399 (1001)
Q Consensus 392 IiDEAH~l 399 (1001)
||||+..+
T Consensus 210 IVDEvDSI 217 (939)
T PRK12902 210 VIDEVDSI 217 (939)
T ss_pred EEecccce
Confidence 99999976
No 172
>KOG0924|consensus
Probab=97.74 E-value=0.0022 Score=75.53 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=64.6
Q ss_pred CeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec----CCCCcchhhhhhhhhhhccCc
Q psy10448 663 YKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD----SDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 663 i~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D----~~WNP~~~iQriGRi~RiGq~ 738 (1001)
+.+.-|...++..... +-|+....+..-++++|..+...|.++....||=-- ..+||. +|
T Consensus 598 L~vlpiYSQLp~dlQ~---kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~-----------~G-- 661 (1042)
T KOG0924|consen 598 LAVLPIYSQLPADLQA---KIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPR-----------IG-- 661 (1042)
T ss_pred eEEEeehhhCchhhhh---hhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccc-----------cc--
Confidence 3444445555543332 336654555557899999999999999988777422 235554 22
Q ss_pred cccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHH
Q psy10448 739 NKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVT 794 (1001)
Q Consensus 739 ~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~ 794 (1001)
-....++ |-.-.+|--|++|-|.+.+-..||++|+.++...|+
T Consensus 662 --------~D~L~~~-----pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 662 --------MDALQIV-----PISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred --------cceeEEE-----echhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 0111111 224455666777777788999999999999888775
No 173
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.0019 Score=80.54 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=77.9
Q ss_pred eEEEeccHHHHHHHHHHHhh----CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 641 SIEFYNMTKMLDILEDYLDG----EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
++||-.-...++-....|.. ..+.++-++|..+.++.++ -|+....+..-+++||..+..+|.+.....||
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~VI-- 336 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYVI-- 336 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEEe--
Confidence 34887777777766666665 3467888999999888777 46654444334899999999999999888776
Q ss_pred cCCCCcc-hhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHH
Q psy10448 717 DSDWNPH-NDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVE 790 (1001)
Q Consensus 717 D~~WNP~-~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiE 790 (1001)
|+-.... .|..+ .| -.++. ..|. .-..|.=|++|-|-+.+=.+|||.+++.++
T Consensus 337 DsG~ak~~~y~~~------~g----------~~~L~-~~~I----SqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 337 DSGLAKEKRYDPR------TG----------LTRLE-TEPI----SKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cCCcccccccccc------cC----------ceeee-EEEe----chhhhhhhccccccCCCceEEEecCHHHHH
Confidence 4432222 00000 00 00110 0110 223344556666667788999999987666
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.60 E-value=0.00029 Score=75.17 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCC-eEEEcCCCCCHHHHHHHHHHHHHH-----cCCCCCcEEEEeCc-chHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLFK-----EGHCKGPFLVSAPL-STIINWEREFET 319 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g-~ILADemGLGKTiqaIa~l~~l~~-----~~~~~~p~LIV~P~-sll~qW~~E~~k 319 (1001)
+|-+.|.+++..+. ...+ +++.-..|+|||-+..+++..+.. .....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 36789999996553 5555 888999999999888888877732 24556679999994 455666666655
No 175
>KOG0953|consensus
Probab=97.49 E-value=0.00064 Score=78.47 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=65.5
Q ss_pred ccccCCCCceeEEEeccHHHHHHHHHHHhhCCCe-EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc
Q psy10448 631 ENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYK-YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT 709 (1001)
Q Consensus 631 ~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~-~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~ 709 (1001)
....+.+++-++-||.-. +--+...+...|.. ...|.|+.+++.|.+--..||++.+.. -+|++|+|.|.|+||.
T Consensus 351 sl~nlk~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~-dvlVAsDAIGMGLNL~- 426 (700)
T KOG0953|consen 351 SLSNLKPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC-DVLVASDAIGMGLNLN- 426 (700)
T ss_pred hhccCCCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc-ceEEeecccccccccc-
Confidence 344566777777787643 22344555666655 999999999999999999999976654 6899999999999995
Q ss_pred CCEEEEecCC
Q psy10448 710 ADTVIIYDSD 719 (1001)
Q Consensus 710 Ad~VIi~D~~ 719 (1001)
.+.|||++.-
T Consensus 427 IrRiiF~sl~ 436 (700)
T KOG0953|consen 427 IRRIIFYSLI 436 (700)
T ss_pred eeEEEEeecc
Confidence 6888888865
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.44 E-value=0.00065 Score=82.04 Aligned_cols=137 Identities=21% Similarity=0.264 Sum_probs=86.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HH---H----HHHH-HHHCCCCeEEEEeCCchhh
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-IN---W----EREF-ETWAPDFYVVTYVGDKDCR 336 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~q---W----~~E~-~k~~p~~~vv~y~g~~~~r 336 (1001)
...++=+-+|||+|||.+-+-+|..|.+.....+ |+||||..-+ .- - .+.| ...+.+.+.-.|.-+....
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~K-FIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~ 151 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGLFK-FIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIE 151 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCcee-EEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHH
Confidence 3446778899999999999999999988877666 9999995433 11 1 2223 2333222222222111110
Q ss_pred hhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh---Hh---------------------hhcCCceeEEE
Q psy10448 337 IVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND---VA---------------------LLGSIEWAVLV 392 (1001)
Q Consensus 337 ~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d---~~---------------------~L~~~~w~~VI 392 (1001)
.. .+ .......|++.+.+.+.++ .. .+...+ -+||
T Consensus 152 ~~----~~----------------~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r-PIvI 210 (985)
T COG3587 152 KF----KF----------------KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR-PIVI 210 (985)
T ss_pred HH----hh----------------ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC-CEEE
Confidence 00 00 2233456777777777665 11 111111 2799
Q ss_pred EcCccccCCcccHHHHHHhcccccceEeeecCC
Q psy10448 393 VDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTP 425 (1001)
Q Consensus 393 iDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTP 425 (1001)
|||.|++... .+.+.++..++....+=.+||-
T Consensus 211 vDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 211 VDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred ecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 9999999765 7999999999999888888884
No 177
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.37 E-value=0.037 Score=69.87 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHhh----cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC--
Q psy10448 249 LHAYQLEGINWLRYSW----GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA-- 321 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~----~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~-- 321 (1001)
=+-+|-.+++-+...- .++.-|+--..||.|||+.=.-++..|.......+ +-|..- .+|.-|--+++++=.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~R-fsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGAR-FAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCce-EEEEccccceeccchHHHHHhcCC
Confidence 4568999988765432 23344677889999999998888888766554333 333333 344456566665532
Q ss_pred CCCeEEEEeCCchhhhhhh----------------------ccc----cccccccccCCCCc-cc-----cCCCccccEE
Q psy10448 322 PDFYVVTYVGDKDCRIVLR----------------------DHD----ISWEDTANRGGKPC-RI-----RSSTVKFHVL 369 (1001)
Q Consensus 322 p~~~vv~y~g~~~~r~~i~----------------------~~e----~~~~~~~~~~~~~~-~~-----~~~~~~~dVv 369 (1001)
.+-...|..|+...+.... +.+ ..|... ...+... .+ ........|+
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~-l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGP-LDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCC-ccchhhhhhhccChhhhhhhcCCeE
Confidence 3344555566655554432 111 011100 0000000 00 0112235788
Q ss_pred EecHHHHHhhHhhhc---------CCceeEEEEcCccccCCcccHH-HHHHh--cccccceEeeecCCCCCCHHH
Q psy10448 370 LTSYELITNDVALLG---------SIEWAVLVVDEAHRLKSNQSKF-FKFLS--GYSIQNKLLLTGTPLQNNLEE 432 (1001)
Q Consensus 370 ItTYe~l~~d~~~L~---------~~~w~~VIiDEAH~lKN~~Sk~-~~al~--~l~~~~rllLTGTPlqN~l~E 432 (1001)
|+|-+.+..-...+. ..--..|||||.|-+-...... .+.+. ..-....++||||--..-...
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 888888775442221 2234589999999874332222 22222 224567799999965443333
No 178
>KOG0925|consensus
Probab=97.33 E-value=0.0048 Score=70.35 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=50.9
Q ss_pred EEEEeccccccccccccCCEEEEecCC------CCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHh
Q psy10448 693 VFLLSTRSGGLGINLATADTVIIYDSD------WNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAF 766 (1001)
Q Consensus 693 v~LlStragg~GINL~~Ad~VIi~D~~------WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~ 766 (1001)
-+++||..+...+.+...-. ..||. +||. +.|+. .++. |-.-.||.
T Consensus 315 kvVvstniaetsltidgiv~--VIDpGf~kqkVYNPR---------------------IRves-llv~----PISkasA~ 366 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVF--VIDPGFSKQKVYNPR---------------------IRVES-LLVS----PISKASAQ 366 (699)
T ss_pred eEEEEecchheeeeeccEEE--EecCchhhhcccCcc---------------------eeeee-eeec----cchHhHHH
Confidence 57889999888876665444 44665 4554 11111 2233 33788999
Q ss_pred hhhhhcCCCCeEEEEEEEeCCCHHHHH
Q psy10448 767 SRAHRIGQQNKVMIYRFVTRNSVEERV 793 (1001)
Q Consensus 767 ~RahRiGQ~k~V~Vyrlvt~~TiEE~I 793 (1001)
.|++|.|.+++-..+||.|+..++..|
T Consensus 367 qR~gragrt~pGkcfrLYte~~~~~em 393 (699)
T KOG0925|consen 367 QRAGRAGRTRPGKCFRLYTEEAFEKEM 393 (699)
T ss_pred HHhhhccCCCCCceEEeecHHhhhhcC
Confidence 999999999999999999986665543
No 179
>KOG0390|consensus
Probab=97.29 E-value=0.00015 Score=88.54 Aligned_cols=31 Identities=48% Similarity=0.834 Sum_probs=30.2
Q ss_pred CCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 710 ADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 710 Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|++||+||++|||+...|+++|++|.||++.
T Consensus 667 AsRlil~D~dWNPa~d~QAmaR~~RdGQKk~ 697 (776)
T KOG0390|consen 667 ASRLILFDPDWNPAVDQQAMARAWRDGQKKP 697 (776)
T ss_pred cceEEEeCCCCCchhHHHHHHHhccCCCcce
Confidence 7899999999999999999999999999987
No 180
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.21 E-value=0.00012 Score=64.52 Aligned_cols=33 Identities=48% Similarity=0.802 Sum_probs=32.1
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 773 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiG 773 (1001)
++|+..+++|+++++.||+....|++||++|.|
T Consensus 46 Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 46 GIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 599999999999999999999999999999998
No 181
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.014 Score=71.96 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=81.4
Q ss_pred HHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEe
Q psy10448 566 TRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFY 645 (1001)
Q Consensus 566 ~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFs 645 (1001)
.....|+....+-+......|..|| |-+
T Consensus 409 ~t~~~K~~Aiv~~I~~~~~~gqPvL----------------------------------------------------vgT 436 (822)
T COG0653 409 KTEEEKFKAIVEDIKERHEKGQPVL----------------------------------------------------VGT 436 (822)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEE----------------------------------------------------EcC
Confidence 3445677778888888888887777 888
Q ss_pred ccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCC-----------EEE
Q psy10448 646 NMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATAD-----------TVI 714 (1001)
Q Consensus 646 q~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad-----------~VI 714 (1001)
.+...-+.+...|...|++...++-.-. .|..-|-.+. +..+ .+-++|..+|.|-++.-.. +||
T Consensus 437 ~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VI 511 (822)
T COG0653 437 VSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVI 511 (822)
T ss_pred cceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEE
Confidence 8888889999999999999988887655 3444444442 3333 4788999999998875432 344
Q ss_pred EecCCCCcchhhhhhhhhhhccCc
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
--.-.-+-.-.-|-.||++|.|-.
T Consensus 512 gTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 512 GTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ecccchhhHHHHHhhcccccCCCc
Confidence 444444444444777888887744
No 182
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.15 E-value=0.005 Score=67.36 Aligned_cols=123 Identities=15% Similarity=0.049 Sum_probs=75.0
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 320 (1001)
.|..+++-|+-|+--| ..|-|.-..+|=|||+++...+....-. .+++=||+.+.-+ .+|...|-++
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 5778889999988544 3456999999999999987555443322 3457777876666 4688888887
Q ss_pred CCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH---------hhhcCCceeEE
Q psy10448 321 APDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV---------ALLGSIEWAVL 391 (1001)
Q Consensus 321 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~---------~~L~~~~w~~V 391 (1001)
+ ++.+-........... ......+|+-+|-..+.-|. .......+.++
T Consensus 145 L-Glsv~~~~~~~~~~~r----------------------~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ 201 (266)
T PF07517_consen 145 L-GLSVGIITSDMSSEER----------------------REAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFA 201 (266)
T ss_dssp T-T--EEEEETTTEHHHH----------------------HHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEE
T ss_pred h-hhccccCccccCHHHH----------------------HHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEE
Confidence 7 5555554443321111 11234578888888776542 11123468899
Q ss_pred EEcCcccc
Q psy10448 392 VVDEAHRL 399 (1001)
Q Consensus 392 IiDEAH~l 399 (1001)
||||+..+
T Consensus 202 ivDEvDs~ 209 (266)
T PF07517_consen 202 IVDEVDSI 209 (266)
T ss_dssp EECTHHHH
T ss_pred EEeccceE
Confidence 99998865
No 183
>KOG0926|consensus
Probab=97.12 E-value=0.007 Score=72.68 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=61.5
Q ss_pred HhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH---HcCCCCCcEEEEeCcchH-----HHHHHHHHHHCCCC-eEEEEeCC
Q psy10448 262 YSWGQNIDTILADEMGLGKTIQTITFLYSLF---KEGHCKGPFLVSAPLSTI-----INWEREFETWAPDF-YVVTYVGD 332 (1001)
Q Consensus 262 ~~~~~~~g~ILADemGLGKTiqaIa~l~~l~---~~~~~~~p~LIV~P~sll-----~qW~~E~~k~~p~~-~vv~y~g~ 332 (1001)
...+.+.-+|+|-++|.|||.|.=-|+...= .+....|-+=|--|..+. .--..|+..+.... +-+-|.|.
T Consensus 266 EaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~t 345 (1172)
T KOG0926|consen 266 EAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGT 345 (1172)
T ss_pred HHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccc
Confidence 3445777799999999999999888876421 111112212333353322 22233443321111 11112221
Q ss_pred chhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-hhcCCceeEEEEcCccc
Q psy10448 333 KDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-LLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 333 ~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-~L~~~~w~~VIiDEAH~ 398 (1001)
......|.++|-..+.++.. .+.-..+.+|||||||.
T Consensus 346 -----------------------------i~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 346 -----------------------------IGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred -----------------------------cCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhh
Confidence 12234588999999988753 34445789999999996
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.96 E-value=0.0039 Score=65.57 Aligned_cols=153 Identities=22% Similarity=0.284 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEE
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVT 328 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~ 328 (1001)
+-+.|...++-|. ...-.++.-..|+|||+.|++.+..+...+...+ ++|+-|..-+. +++- |.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~k-iii~Rp~v~~~---~~lG-flp------ 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDK-IIITRPPVEAG---EDLG-FLP------ 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SE-EEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCc---cccc-cCC------
Confidence 3468999998776 5556888999999999999999998888765444 77776754321 2221 111
Q ss_pred EeCCchhhhhhhcccccccccccc-CCCCccccCCCccccEEEecHHHHHhhHhhhc--CCceeEEEEcCccccCCcccH
Q psy10448 329 YVGDKDCRIVLRDHDISWEDTANR-GGKPCRIRSSTVKFHVLLTSYELITNDVALLG--SIEWAVLVVDEAHRLKSNQSK 405 (1001)
Q Consensus 329 y~g~~~~r~~i~~~e~~~~~~~~~-~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~--~~~w~~VIiDEAH~lKN~~Sk 405 (1001)
|+...... .+--...+.... -+. ..+........|-+.+. .++. .++..+|||||||++. ...
T Consensus 70 --G~~~eK~~--p~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~-------~~iRGrt~~~~~iIvDEaQN~t--~~~ 135 (205)
T PF02562_consen 70 --GDLEEKME--PYLRPIYDALEELFGK-EKLEELIQNGKIEIEPL-------AFIRGRTFDNAFIIVDEAQNLT--PEE 135 (205)
T ss_dssp ------------TTTHHHHHHHTTTS-T-TCHHHHHHTTSEEEEEG-------GGGTT--B-SEEEEE-SGGG----HHH
T ss_pred --CCHHHHHH--HHHHHHHHHHHHHhCh-HhHHHHhhcCeEEEEeh-------hhhcCccccceEEEEecccCCC--HHH
Confidence 11110000 000000000000 000 00000001112333332 2233 2345899999999874 344
Q ss_pred HHHHHhcccccceEeeecCCCCCCH
Q psy10448 406 FFKFLSGYSIQNKLLLTGTPLQNNL 430 (1001)
Q Consensus 406 ~~~al~~l~~~~rllLTGTPlqN~l 430 (1001)
+...+.++....++.++|-|.|.+.
T Consensus 136 ~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 136 LKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp HHHHHTTB-TT-EEEEEE-------
T ss_pred HHHHHcccCCCcEEEEecCceeecC
Confidence 5556777888899999999988654
No 185
>PRK10536 hypothetical protein; Provisional
Probab=96.82 E-value=0.0043 Score=67.09 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEE
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVT 328 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~ 328 (1001)
.-..|...+.+|. .+..+++.-+.|+|||..++++....+..+. ...++|+-|.-.. .|.-.|.|+
T Consensus 60 ~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG----- 125 (262)
T PRK10536 60 RNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPG----- 125 (262)
T ss_pred CCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCC-----
Confidence 4567888887775 4557888999999999999999986554433 3334554453222 232233332
Q ss_pred EeCCchhhhhhhcccccccccc-ccCCCCccccCC--CccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcccH
Q psy10448 329 YVGDKDCRIVLRDHDISWEDTA-NRGGKPCRIRSS--TVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSK 405 (1001)
Q Consensus 329 y~g~~~~r~~i~~~e~~~~~~~-~~~~~~~~~~~~--~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk 405 (1001)
+...+... +-....+.- ..-+. ..+... ...-.|.|.+...++-. .++-++|||||||++.. ..
T Consensus 126 ---~~~eK~~p--~~~pi~D~L~~~~~~-~~~~~~~~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~ 192 (262)
T PRK10536 126 ---DIAEKFAP--YFRPVYDVLVRRLGA-SFMQYCLRPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQ 192 (262)
T ss_pred ---CHHHHHHH--HHHHHHHHHHHHhCh-HHHHHHHHhccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HH
Confidence 11000000 000000000 00000 000000 00112555554444321 22347999999999853 45
Q ss_pred HHHHHhcccccceEeeecCCCCCC
Q psy10448 406 FFKFLSGYSIQNKLLLTGTPLQNN 429 (1001)
Q Consensus 406 ~~~al~~l~~~~rllLTGTPlqN~ 429 (1001)
....+..+....+++++|-|-|.+
T Consensus 193 ~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred HHHHHhhcCCCCEEEEeCChhhcc
Confidence 566677888899999999998765
No 186
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.67 E-value=0.0079 Score=75.22 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=78.2
Q ss_pred CceeEEEeccHHHHHHHHHHHhhC-CCeEEEEEccCCHHHHHHHHHHhcCC---CCCcEEEEEecccccccccccc--CC
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGE-GYKYERIDGNITGSMRQESIDRFNAP---GASQFVFLLSTRSGGLGINLAT--AD 711 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eRq~~Id~Fn~~---~~~~~v~LlStragg~GINL~~--Ad 711 (1001)
...++||..+-.+++.+...|... ++. +.+.|. ..|.++++.|.+. +.+ .+|+++.+..+|||++. +.
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~--~VL~g~~sf~EGVD~pGd~l~ 607 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG--SVLFGLQSFAEGLDLPGDYLT 607 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC--eEEEEeccccccccCCCCceE
Confidence 335788888888888888888643 333 344564 2478888777642 222 37778899999999977 68
Q ss_pred EEEEecCCC-Ccch-hhhhhhhh-hhccCc-cccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 712 TVIIYDSDW-NPHN-DIQAFSRA-HRIGQQ-NKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 712 ~VIi~D~~W-NP~~-~iQriGRi-~RiGq~-~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
.|||.-.|+ +|.. +.++.-+. -+.|.. ...+.|..|.. .-.|++||.-|-.+.+-|.+
T Consensus 608 ~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~-----------kl~Qg~GRlIRs~~D~G~i~ 669 (697)
T PRK11747 608 QVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASF-----------KLIQAVGRLIRSEQDRGRVT 669 (697)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------HHHHHhccccccCCceEEEE
Confidence 999988886 4532 23232222 222321 11111222221 46799999999988876644
No 187
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.60 E-value=0.0035 Score=60.68 Aligned_cols=117 Identities=25% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcC---CCCCcEEEEeCcch-HHHHHHHHHHHCCCCeEEEEeCCchhhhhhhc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAPLST-IINWEREFETWAPDFYVVTYVGDKDCRIVLRD 341 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~---~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~ 341 (1001)
.++.+++.-+.|.|||..+-.++..+.... .....+.|-+|... ...+..++..-..... .
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~------~--------- 67 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL------K--------- 67 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS------S---------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc------c---------
Confidence 345578889999999999999888775421 11122455555443 4455555443321000 0
Q ss_pred cccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcc--cccceE
Q psy10448 342 HDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGY--SIQNKL 419 (1001)
Q Consensus 342 ~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l--~~~~rl 419 (1001)
. -.+..+.+..-...+....-.+|||||+|++. .......++.+ .....+
T Consensus 68 ---------------------~-----~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~v 119 (131)
T PF13401_consen 68 ---------------------S-----RQTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKV 119 (131)
T ss_dssp ---------------------S-----TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEE
T ss_pred ---------------------c-----cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeE
Confidence 0 00111111112223333333799999999984 24455555544 666789
Q ss_pred eeecCC
Q psy10448 420 LLTGTP 425 (1001)
Q Consensus 420 lLTGTP 425 (1001)
+|+|||
T Consensus 120 vl~G~~ 125 (131)
T PF13401_consen 120 VLVGTP 125 (131)
T ss_dssp EEEESS
T ss_pred EEEECh
Confidence 999999
No 188
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.53 E-value=0.0011 Score=57.99 Aligned_cols=33 Identities=45% Similarity=0.732 Sum_probs=31.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 773 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiG 773 (1001)
++|+..++.|+++++.||+....|++||++|.|
T Consensus 50 Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 50 GLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 589999999999999999999999999999987
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.36 E-value=0.0062 Score=62.28 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=75.3
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCC--eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecc--cccccccccc--CC
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGY--KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTR--SGGLGINLAT--AD 711 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi--~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStr--agg~GINL~~--Ad 711 (1001)
...++||..+-..++.+.+.+...+. .+..+.- +...+..++++|..+.. .+|+++. ...+|||++. |.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECESEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCchhh
Confidence 36789999999999999999987642 1122222 34578999999999543 4777777 8999999986 78
Q ss_pred EEEEecCCCC-cch-hhhh-hhhhhhccCc-cccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 712 TVIIYDSDWN-PHN-DIQA-FSRAHRIGQQ-NKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 712 ~VIi~D~~WN-P~~-~iQr-iGRi~RiGq~-~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
.||+.-.|+- |.. .++. ..-..+.++. .....+..|-+ .-.||+||+-|-....-+.|
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----------~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIR-----------KLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHH-----------HHHHHHHCC--STT-EEEEE
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHH-----------HHhhhcCcceeccCCcEEEE
Confidence 9999999974 432 2232 2222222221 11122222222 56799999999888766555
No 190
>KOG1802|consensus
Probab=96.35 E-value=0.011 Score=69.93 Aligned_cols=75 Identities=25% Similarity=0.386 Sum_probs=61.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch-HHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~v 326 (1001)
+|-.-|..||.-.+ ++.=.||.-..|+|||+++.+++.++.+.. .+|+||++|..+ +.|-..-|++- +++|
T Consensus 410 kLN~SQ~~AV~~VL----~rplsLIQGPPGTGKTvtsa~IVyhl~~~~--~~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQH--AGPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHH----cCCceeeecCCCCCceehhHHHHHHHHHhc--CCceEEEcccchhHHHHHHHHHhc--CceE
Confidence 57788999998766 666689999999999999999999998874 678999999665 58888888875 4666
Q ss_pred EEEe
Q psy10448 327 VTYV 330 (1001)
Q Consensus 327 v~y~ 330 (1001)
+-..
T Consensus 482 vRl~ 485 (935)
T KOG1802|consen 482 VRLC 485 (935)
T ss_pred eeee
Confidence 6544
No 191
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.29 E-value=0.024 Score=60.33 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=58.5
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
.++.+||-|.+.+..|... ..+.|.++-.-||-|||-..+-++..++..+. .=+-+|||.+++.|=..-+..-
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHH
Confidence 5788999999999888753 45678999999999999988887777765543 3377889999998877776553
No 192
>KOG1131|consensus
Probab=96.15 E-value=0.02 Score=65.92 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=49.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
-..+|-|.+-..-+......+++|+|-+..|+|||+.-++++.++....+....-||-|..
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 3578889887777788888999999999999999999999988877666544335777763
No 193
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.12 E-value=0.02 Score=70.75 Aligned_cols=127 Identities=9% Similarity=-0.045 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCC
Q psy10448 276 MGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGG 354 (1001)
Q Consensus 276 mGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~ 354 (1001)
.|.|||-..+.++...+..+. .+||++| .++..|+...|...++...+.++++.-......+.. ..
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w----~~------ 235 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRW----LA------ 235 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHH----HH------
Confidence 499999999999988887653 4899999 788899999999999767788888765544433322 11
Q ss_pred CCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc--CCcccHHH--H--H-Hh-cccccceEeeecCCC
Q psy10448 355 KPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL--KSNQSKFF--K--F-LS-GYSIQNKLLLTGTPL 426 (1001)
Q Consensus 355 ~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l--KN~~Sk~~--~--a-l~-~l~~~~rllLTGTPl 426 (1001)
.......|||-|...+.- .-.+..+|||||=|.- |...+..+ + + ++ ....-..++-|+||-
T Consensus 236 ------~~~G~~~IViGtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 236 ------VLRGQARVVVGTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred ------HhCCCCcEEEEcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 123345799999776532 2234679999999964 33322221 1 1 11 122334566799993
No 194
>KOG1002|consensus
Probab=96.00 E-value=0.0033 Score=71.57 Aligned_cols=32 Identities=44% Similarity=0.644 Sum_probs=30.4
Q ss_pred cCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 709 TADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 709 ~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
.|.+|+++||+|||+..-|+.+|++||||...
T Consensus 708 eASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rP 739 (791)
T KOG1002|consen 708 EASQVFMMDPWWNPAVEWQAQDRIHRIGQYRP 739 (791)
T ss_pred hhceeEeecccccHHHHhhhhhhHHhhcCccc
Confidence 57899999999999999999999999999986
No 195
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.92 E-value=0.026 Score=64.94 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=32.2
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHH-HHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWER-EFE 318 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~-E~~ 318 (1001)
.|+--..|+|||+.++.++..+..... ....+++|+...+.+... .+.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~-~~~~~~l~~n~~l~~~l~~~l~ 52 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEE-GKKVLYLCGNHPLRNKLREQLA 52 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhcccc-CCceEEEEecchHHHHHHHHHh
Confidence 466778999999999999988822222 233677787665555433 443
No 196
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.85 E-value=0.071 Score=56.00 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll 310 (1001)
+|-+-|.+++..+.. ...+-++|.-..|+|||.....+...+...+ ..+++++|....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHH
Confidence 367889999987752 2233477888999999987666555554432 458999997654
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.80 E-value=0.038 Score=68.37 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=52.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch-HHHHHHHHHHH
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETW 320 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~ 320 (1001)
..|-+.|..+|.... ......++--..|+|||.++++++..+...+. ++||++|.+. +.+....+...
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHhC
Confidence 468899999997654 23356888999999999999999988876543 5999999665 46666667653
No 198
>KOG1803|consensus
Probab=95.78 E-value=0.045 Score=64.71 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=50.1
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch-HHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWERE 316 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl-l~qW~~E 316 (1001)
+..|-+-|..++.+.. +...-.|+--++|+|||.+...++..+...+ +.+||.+|..+ +.|-.+.
T Consensus 183 ~~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 4568889999998775 2224467788999999999999999988765 45999999665 4665554
No 199
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.75 E-value=0.047 Score=54.16 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=61.3
Q ss_pred EEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc--CCEEEEecCCC-Ccch-hhhhhhhhhh-ccCc--
Q psy10448 666 ERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT--ADTVIIYDSDW-NPHN-DIQAFSRAHR-IGQQ-- 738 (1001)
Q Consensus 666 ~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~--Ad~VIi~D~~W-NP~~-~iQriGRi~R-iGq~-- 738 (1001)
..+-| ....+...+++.|...... .+|+++....+|||++. +..||+.-.|+ ||.. .++..-.-.+ .++.
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 33434 4445678999999875433 47787777999999987 68899999886 4542 2232222111 1211
Q ss_pred cccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 739 NKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 739 ~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
.....+..|-+ .-.||+||+-|-.+..-+.+
T Consensus 103 ~~~~~~~~a~~-----------~l~Qa~GR~iR~~~D~g~i~ 133 (141)
T smart00492 103 FDFVSLPDAMR-----------TLAQCVGRLIRGANDYGVVV 133 (141)
T ss_pred hhHHHHHHHHH-----------HHHHHhCccccCcCceEEEE
Confidence 11111222222 56799999999888765543
No 200
>KOG1911|consensus
Probab=95.35 E-value=0.013 Score=64.76 Aligned_cols=56 Identities=27% Similarity=0.577 Sum_probs=45.3
Q ss_pred CCCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 136 KPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 136 ~~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
.++-..+++|++++.. .|..+|||||+|-|=.+.|||.+... ..+.+.|+.|+...
T Consensus 45 ~~~~~vvEki~~~r~~-~g~~eYlvkW~Gy~~~~ntWEPee~~-~~C~~li~~~~~~~ 100 (270)
T KOG1911|consen 45 EEEEYVVEKILKRRKK-NGKIEYLVKWKGYPDPDNTWEPEEHN-LDCPELIDEFEKSQ 100 (270)
T ss_pred ccchhhhhhhhhcccc-CCCceeeeecCCCCCccccCCchhhc-cccHHHHHHHHHHh
Confidence 3566789999999864 45599999999999999999998753 45588999998653
No 201
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.34 E-value=0.0081 Score=77.35 Aligned_cols=181 Identities=28% Similarity=0.337 Sum_probs=100.9
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCC--HHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLG--KTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPD 323 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLG--KTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~ 323 (1001)
...+.++|.....-.... ......++++.|+| ||+.+..+........... ..++++|..+..+|..+...+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~ 158 (866)
T COG0553 82 RFILIPHQLDIALEVLNE--LALRVLIADEVGLGDLKTIEAGAILKELLLRGEIK-RVLILVPKTLRAQWVVELLEKFNI 158 (866)
T ss_pred ccccCcchhhhhhhhhhh--hhhchhhcccccccccccccccccchHhhhhhhhc-cceeccchHHHHHHHHHhhhhccc
Confidence 345677777666332211 12227889999999 8999888776665554433 489999999999999998765311
Q ss_pred Ce-EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh----HhhhcCCce---eEEEEcC
Q psy10448 324 FY-VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND----VALLGSIEW---AVLVVDE 395 (1001)
Q Consensus 324 ~~-vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d----~~~L~~~~w---~~VIiDE 395 (1001)
.. +....+.......... . ........++.+.+..... ...+....| +++++||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (866)
T COG0553 159 RLAVLDKEGLRYLLKQYDA------------Y------NPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDE 220 (866)
T ss_pred cchhhhhhhhhhhhhhhcc------------c------ccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcch
Confidence 11 1100000000000000 0 0000001144444444432 123334456 7999999
Q ss_pred ccccCCcc---------cHHHHHHhccc--cc------ceEeeecCCCCCCHHHHHHhhhccCCCCCCC
Q psy10448 396 AHRLKSNQ---------SKFFKFLSGYS--IQ------NKLLLTGTPLQNNLEELFHLLNFLTPEKFND 447 (1001)
Q Consensus 396 AH~lKN~~---------Sk~~~al~~l~--~~------~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~ 447 (1001)
+|.+.+.. ...+..+.... .. ...++++||.+....+++....++.+..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 221 AHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 99987642 23333333221 11 2347899999998888877777777766555
No 202
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.19 E-value=0.14 Score=62.69 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--CCcEEEEeCcchHHH-HHHHHHHHCCCCeEE
Q psy10448 251 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPLSTIIN-WEREFETWAPDFYVV 327 (1001)
Q Consensus 251 pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--~~p~LIV~P~sll~q-W~~E~~k~~p~~~vv 327 (1001)
+.|+.++.... .+.-++|.-..|+|||.++..++..+...... ...+++++|+.-... ..+-+..-...+..
T Consensus 148 ~~Qk~A~~~al----~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALAL----KSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHh----hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 78999987654 45678999999999999998888777654332 134899999765543 22222221111100
Q ss_pred EEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh--------HhhhcCCceeEEEEcCcccc
Q psy10448 328 TYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND--------VALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 328 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d--------~~~L~~~~w~~VIiDEAH~l 399 (1001)
.......+. +-.+|...+... ...-...++++||||||-.+
T Consensus 223 ----~~~~~~~~~---------------------------~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv 271 (586)
T TIGR01447 223 ----AEALIAALP---------------------------SEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV 271 (586)
T ss_pred ----chhhhhccc---------------------------cccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC
Confidence 000000000 000011111000 00011235789999999998
Q ss_pred CCcccHHHHHHhcccccceEeeecCCCC
Q psy10448 400 KSNQSKFFKFLSGYSIQNKLLLTGTPLQ 427 (1001)
Q Consensus 400 KN~~Sk~~~al~~l~~~~rllLTGTPlq 427 (1001)
- ...+...+..+....|++|.|=|-|
T Consensus 272 d--~~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 272 D--LPLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred C--HHHHHHHHHhcCCCCEEEEECChhh
Confidence 4 2345566777888889999998865
No 203
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.18 E-value=0.12 Score=64.96 Aligned_cols=136 Identities=22% Similarity=0.203 Sum_probs=82.4
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDF 324 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 324 (1001)
.+..|-+-|.+++..+. .++-.+|.-..|+|||.++-+++..+...+. ..++++++|.........|. + +.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~~L~e~---~-g~ 390 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAKRLGEV---T-GL 390 (720)
T ss_pred cCCCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHHHHHHh---c-CC
Confidence 35679999999997664 4557999999999999988777766554431 24588889987776544432 1 10
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
....++ ..+. +. ... . ...... .....++||||||+.+-. .
T Consensus 391 ~a~Tih------~lL~-----~~-------------~~~-----~------~~~~~~--~~~~~~llIvDEaSMvd~--~ 431 (720)
T TIGR01448 391 TASTIH------RLLG-----YG-------------PDT-----F------RHNHLE--DPIDCDLLIVDESSMMDT--W 431 (720)
T ss_pred ccccHH------HHhh-----cc-------------CCc-----c------chhhhh--ccccCCEEEEeccccCCH--H
Confidence 000000 0000 00 000 0 000000 013467999999999842 2
Q ss_pred HHHHHHhcccccceEeeecCCCCC
Q psy10448 405 KFFKFLSGYSIQNKLLLTGTPLQN 428 (1001)
Q Consensus 405 k~~~al~~l~~~~rllLTGTPlqN 428 (1001)
.....+..+....+++|-|=|-|-
T Consensus 432 ~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 432 LALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred HHHHHHHhCCCCCEEEEECccccc
Confidence 345556677778899999988663
No 204
>KOG1132|consensus
Probab=95.14 E-value=0.096 Score=64.33 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTIT 286 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa 286 (1001)
..+++|-|+.-...++.......+|+|-+.+|+|||+.-|+
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 46789999999988899999999999999999999997553
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.01 E-value=0.25 Score=47.71 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=27.0
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 309 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl 309 (1001)
+...++.-+.|.|||..+-.++..+.. ...+++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~ 58 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDL 58 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhh
Confidence 567889999999999877777766642 2234555544333
No 206
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.90 E-value=0.18 Score=62.22 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+..++ + .||.-..|+|||..+..|+..+..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555655555554443 3 488999999999999999988754
No 207
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=0.1 Score=61.46 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=59.8
Q ss_pred EcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHH-----HCCCCeEEEEeCCchhhhhhhcccccc
Q psy10448 273 ADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFET-----WAPDFYVVTYVGDKDCRIVLRDHDISW 346 (1001)
Q Consensus 273 ADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k-----~~p~~~vv~y~g~~~~r~~i~~~e~~~ 346 (1001)
-+.+|.|||+++.++|.+++..+... +|..|- .+++..-..-|.. +.-. .++.+.+..- .|+
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~--flffvnq~nilekt~~nftd~~s~kylf~-e~i~~~d~~i---~ik------ 70 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRN--FLFFVNQANILEKTKLNFTDSVSSKYLFS-ENININDENI---EIK------ 70 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhh--EEEEecchhHHHHHHhhcccchhhhHhhh-hhhhcCCcee---eee------
Confidence 46799999999999999999887544 676665 6666543333211 1100 0111111100 000
Q ss_pred ccccccCCCCccccCCCccccEEEecHHHHHhhHh----------hhcCCceeEEEEcCcccc
Q psy10448 347 EDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA----------LLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~----------~L~~~~w~~VIiDEAH~l 399 (1001)
+............|+.||-+.+..+.. .|... --+.+-||||++
T Consensus 71 --------kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~-klvfl~deahhl 124 (812)
T COG3421 71 --------KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQ-KLVFLADEAHHL 124 (812)
T ss_pred --------eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhC-ceEEEechhhhh
Confidence 000011233456799999998887652 22221 236788999999
No 208
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.68 E-value=0.11 Score=51.64 Aligned_cols=118 Identities=23% Similarity=0.287 Sum_probs=66.8
Q ss_pred HHHHHHHHhhCCC----eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccc--ccccccccc--CCEEEEecCCC-C
Q psy10448 651 LDILEDYLDGEGY----KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRS--GGLGINLAT--ADTVIIYDSDW-N 721 (1001)
Q Consensus 651 ldiL~~~L~~~gi----~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStra--gg~GINL~~--Ad~VIi~D~~W-N 721 (1001)
++.+.+.+...+. ....+.+.. ..+...+++.|+......-.+|+++.. .++|||++. +..||+.-.|+ +
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 4444455554432 234444543 335578999998743310135555554 899999987 68999999885 4
Q ss_pred cch-hhhhh-hhhhhcc--CccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 722 PHN-DIQAF-SRAHRIG--QQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 722 P~~-~iQri-GRi~RiG--q~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
|.. .+++. --..+.+ +......+..|-+ .-.||+||+-|-.+..-+.|
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----------~~~Qa~GR~iR~~~D~g~i~ 134 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMR-----------ALAQAIGRAIRHKNDYGVVV 134 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-----------HHHHHhCccccCccceEEEE
Confidence 542 22322 2222222 1111112222222 56799999999988876654
No 209
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.59 E-value=0.13 Score=63.03 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=81.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-CCCcEEEEeCcchHHHHHHH-HHHHCCCCeE
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLSTIINWERE-FETWAPDFYV 326 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-~~~p~LIV~P~sll~qW~~E-~~k~~p~~~v 326 (1001)
..+.|++++.-.. .+.-++|.-..|+|||.++..++..+..... ....+++++|..-...=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 4589999996544 5567899999999999999888887765432 22358888997665433332 2111101100
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh--------HhhhcCCceeEEEEcCccc
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND--------VALLGSIEWAVLVVDEAHR 398 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d--------~~~L~~~~w~~VIiDEAH~ 398 (1001)
....+..+. .-.+|...+... ...-...++++||||||..
T Consensus 229 -----~~~~~~~~~---------------------------~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM 276 (615)
T PRK10875 229 -----TDEQKKRIP---------------------------EEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM 276 (615)
T ss_pred -----chhhhhcCC---------------------------CchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc
Confidence 000000000 000111111100 0011223568999999999
Q ss_pred cCCcccHHHHHHhcccccceEeeecCCCCC
Q psy10448 399 LKSNQSKFFKFLSGYSIQNKLLLTGTPLQN 428 (1001)
Q Consensus 399 lKN~~Sk~~~al~~l~~~~rllLTGTPlqN 428 (1001)
+- .......+..+....|++|-|=|-|-
T Consensus 277 vd--~~lm~~ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 277 VD--LPMMARLIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred cc--HHHHHHHHHhcccCCEEEEecchhhc
Confidence 84 34556677788888999999988653
No 210
>KOG2748|consensus
Probab=94.56 E-value=0.013 Score=64.26 Aligned_cols=48 Identities=29% Similarity=0.593 Sum_probs=36.3
Q ss_pred eeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHh
Q psy10448 141 IANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNK 191 (1001)
Q Consensus 141 ~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~ 191 (1001)
-++-||.+|. +.|..+|||||+|-.--+.|||.++. |.+ ..+|..|..
T Consensus 12 AaEsIlkkRi-rKGrvEYlVKWkGWs~kyNTWEPEEN-ILD-pRLi~AFe~ 59 (369)
T KOG2748|consen 12 AAESILKKRI-RKGRVEYLVKWKGWSQKYNTWEPEEN-ILD-PRLIAAFEQ 59 (369)
T ss_pred HHHHHHHHHh-hccceEEEEEecccccccCccCcccc-ccC-HHHHHHHHh
Confidence 3455666663 77999999999999999999999885 433 356666663
No 211
>KOG4150|consensus
Probab=94.46 E-value=0.07 Score=62.04 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=71.9
Q ss_pred EEeccHHHHHHHHHH----HhhCCC----eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEE
Q psy10448 643 EFYNMTKMLDILEDY----LDGEGY----KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVI 714 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~----L~~~gi----~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VI 714 (1001)
-||...+..+++-.. |..-|- .+..+.|+-+.++|.++-...-.+ ...-+++|.|..+||++-.-|.|+
T Consensus 530 AFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G---~L~giIaTNALELGIDIG~LDAVl 606 (1034)
T KOG4150|consen 530 AFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG---KLCGIIATNALELGIDIGHLDAVL 606 (1034)
T ss_pred EeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC---eeeEEEecchhhhccccccceeEE
Confidence 888888776654332 222221 145678888999998886554333 335799999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhhccCcc
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
..--|.+-+.+-|..||++|....+
T Consensus 607 ~~GFP~S~aNl~QQ~GRAGRRNk~S 631 (1034)
T KOG4150|consen 607 HLGFPGSIANLWQQAGRAGRRNKPS 631 (1034)
T ss_pred EccCchhHHHHHHHhccccccCCCc
Confidence 9999999999999999999987654
No 212
>PLN03025 replication factor C subunit; Provisional
Probab=94.30 E-value=0.37 Score=54.68 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|.+.+..|......+ .+.||.-+.|+|||-.+.+++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444444444333332 35799999999999999999888753
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.54 Score=54.54 Aligned_cols=131 Identities=12% Similarity=0.154 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcC-CCCCcEEEEeCcc--hHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLS--TIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDIS 345 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~-~~~~p~LIV~P~s--ll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~ 345 (1001)
..++.-.+|.|||.++.-++..+.... ...+.+.+|+=-. .-..|+ +..|+..+.+-+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv----------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV----------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-----------------
Confidence 467788999999999988877665432 1223355554321 112222 555542222111
Q ss_pred cccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcc---cHHHHHHhccc--ccceEe
Q psy10448 346 WEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQ---SKFFKFLSGYS--IQNKLL 420 (1001)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~---Sk~~~al~~l~--~~~rll 420 (1001)
.++.+++.+......+ ...++||||++.+..... +.+...+.... ....|.
T Consensus 237 ----------------------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LV 292 (388)
T PRK12723 237 ----------------------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLA 292 (388)
T ss_pred ----------------------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 2233455555544444 357899999999875332 22333333332 245688
Q ss_pred eecCCCCCCHHHHHHhhhccCC
Q psy10448 421 LTGTPLQNNLEELFHLLNFLTP 442 (1001)
Q Consensus 421 LTGTPlqN~l~EL~~LL~fL~p 442 (1001)
|+||--++.+.+++.-...+.+
T Consensus 293 lsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 293 VSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC
Confidence 9999888888877776655544
No 214
>KOG1001|consensus
Probab=94.19 E-value=0.0091 Score=73.37 Aligned_cols=32 Identities=47% Similarity=0.754 Sum_probs=30.6
Q ss_pred cCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 709 TADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 709 ~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
.|++|++.|+.|||....|++.|++|+||...
T Consensus 609 ~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~ 640 (674)
T KOG1001|consen 609 AASHVLLMDPWWNPAVEEQAIDRAHRIGQTKP 640 (674)
T ss_pred hhhHHHhhchhcChHHHHHHHHHHHHhcccce
Confidence 57899999999999999999999999999987
No 215
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.13 E-value=0.18 Score=55.50 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.9
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.+.+|.-+.|+|||..|-+++..+...+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3578999999999999988887765544
No 216
>PRK04296 thymidine kinase; Provisional
Probab=93.94 E-value=0.15 Score=53.34 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.6
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
.++.-+||.|||..++.++..+...+ ..++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 46788999999999999988776543 34676654
No 217
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.73 E-value=0.35 Score=55.51 Aligned_cols=42 Identities=12% Similarity=0.265 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|.+++..|...+..++ ..++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 6667777777777666 47889999999999999999888753
No 218
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.39 Score=56.91 Aligned_cols=42 Identities=24% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|......++ ..|+.-+.|.|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 5555555554444443 25899999999999999999887543
No 219
>KOG1133|consensus
Probab=93.06 E-value=0.84 Score=55.07 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=73.0
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCH-----HHHHHHHHHhcCC---CCCcEEEEEec--cccccccccc
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITG-----SMRQESIDRFNAP---GASQFVFLLST--RSGGLGINLA 708 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~-----~eRq~~Id~Fn~~---~~~~~v~LlSt--ragg~GINL~ 708 (1001)
.=+|+|..+-..|..+...+...|+- .+|.|.-+. .--.++++.|... +.+ .+|++. .-.++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~G--aiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRG--AILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCC--eEEEEEeccccccccccc
Confidence 55888988888999998888876642 233332110 1134567777531 223 355544 3457999998
Q ss_pred c--CCEEEEecCCCC-cchhh--hhh----hhhhhccCccc-cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeE
Q psy10448 709 T--ADTVIIYDSDWN-PHNDI--QAF----SRAHRIGQQNK-YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKV 778 (1001)
Q Consensus 709 ~--Ad~VIi~D~~WN-P~~~i--Qri----GRi~RiGq~~~-~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V 778 (1001)
+ |..||..-.|+- +...+ +|+ |++.+.|..+. +-||+.- .-.|+||||-|-- +.-.
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMk-------------AVNQsIGRAIRH~-~DYA 772 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMK-------------AVNQSIGRAIRHR-KDYA 772 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHH-------------HHHHHHHHHHhhh-ccce
Confidence 8 899999998865 43322 221 33333332221 1222221 4579999998753 3334
Q ss_pred EEEEE
Q psy10448 779 MIYRF 783 (1001)
Q Consensus 779 ~Vyrl 783 (1001)
.||-|
T Consensus 773 ~i~Ll 777 (821)
T KOG1133|consen 773 SIYLL 777 (821)
T ss_pred eEEEe
Confidence 45533
No 220
>KOG0951|consensus
Probab=92.87 E-value=0.36 Score=61.40 Aligned_cols=110 Identities=21% Similarity=0.281 Sum_probs=77.1
Q ss_pred hcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-----HHHHHHHHHHCCCCeEEEEeCCchhhhh
Q psy10448 264 WGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-----INWEREFETWAPDFYVVTYVGDKDCRIV 338 (1001)
Q Consensus 264 ~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-----~qW~~E~~k~~p~~~vv~y~g~~~~r~~ 338 (1001)
+..+.+++++...|+|||+.|=..+.. ....+.+.-|+|...+ .-|..-|.+- .+..++...|.......
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH
Confidence 456778999999999999877655443 3334557888997766 5588888776 46677766665433222
Q ss_pred hhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 339 LRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 339 i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
...+-+|+|.|++.+.... .+. ..++.|+||.|.+.....
T Consensus 1231 -----------------------l~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1231 -----------------------LLQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred -----------------------HhhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccCC
Confidence 2335679999999887653 222 357899999999976543
No 221
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.52 E-value=0.38 Score=54.08 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=37.5
Q ss_pred CCccc-HHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc
Q psy10448 246 GMQLH-AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 308 (1001)
Q Consensus 246 ~~~L~-pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s 308 (1001)
|.+.+ -+|.-++.-|. -..-.=+.|.-.-|+|||+-|+|....--.+....+.++|--|..
T Consensus 225 Gi~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 225 GIRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred ccCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc
Confidence 44444 47888887654 112223677888999999999887655443333444455555543
No 222
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.40 E-value=0.4 Score=45.65 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=30.8
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
+...+|.-.+|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 34578899999999999998887764433 246777765544433
No 223
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.37 E-value=0.82 Score=57.70 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI--DT-ILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~-ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+.-|...+..++ ++ |+.-+.|+|||..+-.|+..+...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4444444544444432 44 789999999999999999887543
No 224
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.23 E-value=1.1 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.7
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
..||.-..|+|||..+..++..+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3488999999999999999988864
No 225
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.98 E-value=0.69 Score=50.76 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHHHhhcCCC-CeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 249 LHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~-g~ILADemGLGKTiqaIa~l~~l 291 (1001)
.-+.+..+++.+......+. .++|.-+.|+|||..+-.++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 44556677777766555544 47789999999998877766554
No 226
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.96 E-value=0.38 Score=53.59 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCC-CCcEEEEe
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSA 305 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~-~~p~LIV~ 305 (1001)
.+.+|.-++|+|||..|.+++..+...+.. .++++.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 367889999999999999888877665443 23444444
No 227
>CHL00181 cbbX CbbX; Provisional
Probab=91.67 E-value=0.48 Score=52.90 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=27.2
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCC-CCcEEEEe
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSA 305 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~-~~p~LIV~ 305 (1001)
+.+|.-++|+|||..|-+++..+...+.. .++++.|.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 46889999999999999998877665543 34444443
No 228
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.60 E-value=5.9 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.4
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
-||.-..|+|||..+..|+..|..
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 578999999999999999988864
No 229
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.54 E-value=1.1 Score=56.27 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCcccHHHHHHHHHHHHhhcC-----CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HH-HHHHH-
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQ-----NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-IN-WEREF- 317 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~-----~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~q-W~~E~- 317 (1001)
+++.|+-|.+-.+-+...+.. +..+++-..||+|||+--+.-+....... .++++|-+.+..+ .| +.+++
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~--~k~vVIST~T~~LQeQL~~kDlP 100 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE--KKKLVISTATVALQEQLVSKDLP 100 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHhhhhh
Confidence 578999999988887777765 35577777999999998776554433222 3456666554444 33 33443
Q ss_pred --HHHCC-CCeEEEEeC
Q psy10448 318 --ETWAP-DFYVVTYVG 331 (1001)
Q Consensus 318 --~k~~p-~~~vv~y~g 331 (1001)
.+.++ ++++.+..|
T Consensus 101 ~l~~~l~~~~~~~llKG 117 (697)
T PRK11747 101 LLLKISGLDFKFTLAKG 117 (697)
T ss_pred HHHHHcCCCceEEEEcC
Confidence 33332 455555444
No 230
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.22 E-value=1.1 Score=51.12 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.++|+|....+-+...-.-...-++.-+.|+|||..|.+++..+.-..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 468888888876665422222356789999999999999999987543
No 231
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.22 E-value=0.67 Score=52.64 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|.+.+.+|......+. +.++.-+.|+|||..+.+++..+..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3334444444444444 6899999999999999999887753
No 232
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.00 E-value=1.5 Score=53.85 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+..++ ..|+.-..|.|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4444444444444443 3489999999999999999888743
No 233
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.61 E-value=1.4 Score=54.02 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--DT-ILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~-ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+..++ ++ |+.-..|+|||..|..++..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5566666655555543 33 78999999999999999988764
No 234
>PRK06526 transposase; Provisional
Probab=90.42 E-value=0.74 Score=50.45 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 254 LEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 254 ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
+.+..|+. .+.+.+|.-..|+|||..+.++...+...+. .++++ ....|..++..
T Consensus 89 l~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~g~---~v~f~----t~~~l~~~l~~ 143 (254)
T PRK06526 89 LGTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQAGH---RVLFA----TAAQWVARLAA 143 (254)
T ss_pred HhcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHCCC---chhhh----hHHHHHHHHHH
Confidence 33445664 6778999999999999999999888776542 23332 23456666643
No 235
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.38 E-value=1.9 Score=52.06 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|......++ + -|+.-..|+|||..|-.++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5555555555444432 3 4789999999999999999888543
No 236
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.10 E-value=3.2 Score=42.15 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHHHcCCCC
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLFKEGHCK 298 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~~~~~~~ 298 (1001)
|.+.+..|...+.+++ . -|+.-+.|.||+-.|.+++..++......
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~ 50 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNE 50 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 5666666766666553 3 48888999999999999999987765443
No 237
>PF13245 AAA_19: Part of AAA domain
Probab=90.09 E-value=0.98 Score=39.75 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=33.5
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHc--CCCCCcEEEEeCcchHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKE--GHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~--~~~~~p~LIV~P~sll~ 311 (1001)
+.-.++--..|+|||.+++..+..+... .. ...+||++|....-
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa 55 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAA 55 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHH
Confidence 3346668999999999999999888843 33 55699999965543
No 238
>PHA02533 17 large terminase protein; Provisional
Probab=90.09 E-value=1.8 Score=52.50 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=38.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
+.|.|+|.+-+..|. .++-.++.-.=..|||..+.+++.++.-... ..-+++++|
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~ 112 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAH 112 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeC
Confidence 679999999887663 2334467778889999998876654433222 234778888
No 239
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.91 E-value=1.9 Score=45.92 Aligned_cols=29 Identities=17% Similarity=-0.043 Sum_probs=23.2
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
...+.+|.-+.|+|||..+.++.......
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34568889999999999999888776543
No 240
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.86 E-value=4.6 Score=46.44 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHHHHHh-hc--CCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 247 MQLHAYQLEGINWLRYS-WG--QNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~-~~--~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
+.=|..|++.+.-.+.. .. ...+.++.-+.|+|||..+-.++..+...
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34577888877443333 22 23468889999999999999988877543
No 241
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.82 E-value=2.7 Score=51.96 Aligned_cols=42 Identities=19% Similarity=0.115 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|...+..++ + .|+.-+.|+|||..|-.|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 5555555555555543 2 4789999999999999999888654
No 242
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.61 E-value=2.2 Score=49.30 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
|...+..+...+..++ + .++.-+.|+|||..|-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 6666666665555443 3 48999999999999999988775
No 243
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.61 E-value=3.2 Score=49.74 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQN---IDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~---~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+..+ ...|+.-..|+|||..|..++..+..
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 444455554444443 35788999999999999988877754
No 244
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.44 E-value=2.9 Score=49.34 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=35.2
Q ss_pred ceeEEEEcCccccCCccc---HHHHHHhc--ccccceEeeecCCCCCCHHHHHHhhhccCC
Q psy10448 387 EWAVLVVDEAHRLKSNQS---KFFKFLSG--YSIQNKLLLTGTPLQNNLEELFHLLNFLTP 442 (1001)
Q Consensus 387 ~w~~VIiDEAH~lKN~~S---k~~~al~~--l~~~~rllLTGTPlqN~l~EL~~LL~fL~p 442 (1001)
..++||||-+-+...... .+...+.. ......++|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 478999999876533222 22222221 123457899999877777777776665554
No 245
>PRK08181 transposase; Validated
Probab=89.33 E-value=4.4 Score=44.78 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
+-.-|..++..+......+.+.+|.-..|+|||-.+.++...+...+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 44567777755433344778899999999999999999988876653
No 246
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.60 E-value=2.8 Score=50.54 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|...+..++ ..||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 6666666655444443 57899999999999999999887543
No 247
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.43 E-value=2.3 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
.-|+.-..|.|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 36789999999999999999887654
No 248
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.40 E-value=0.33 Score=49.88 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=27.0
Q ss_pred CccccEEEecHHHHHhhHh--hhc--CCceeEEEEcCccccCC
Q psy10448 363 TVKFHVLLTSYELITNDVA--LLG--SIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 363 ~~~~dVvItTYe~l~~d~~--~L~--~~~w~~VIiDEAH~lKN 401 (1001)
....+|||++|..+..... .+. ...-.+|||||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4467899999999987532 222 23446999999999843
No 249
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.38 E-value=3.3 Score=48.54 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+.+++ .-|+.-+.|+|||..|.+++..+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555555555542 3678999999999999999988864
No 250
>KOG0991|consensus
Probab=88.31 E-value=1.2 Score=47.27 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.9
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
.+-.+.|++-.+|.|||..+.+++..|+-
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34457899999999999999988887753
No 251
>KOG1805|consensus
Probab=88.11 E-value=1.7 Score=54.43 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=86.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCe
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFY 325 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~ 325 (1001)
..|-.-|..|+.... ..... .++---+|+|||-+..+++..|...+ +.+|+.+= .+-+.|-.--+..+. ..
T Consensus 668 ~~LN~dQr~A~~k~L--~aedy-~LI~GMPGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~--i~ 739 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKAL--AAEDY-ALILGMPGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFG--IY 739 (1100)
T ss_pred hhcCHHHHHHHHHHH--hccch-heeecCCCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccC--cc
Confidence 467888999985432 22233 44444579999999999988887665 34777776 455677776666653 22
Q ss_pred EEEEeCCchh-hhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 326 VVTYVGDKDC-RIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 326 vv~y~g~~~~-r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
+ +-.|.... ...+.+.-. .... .-.....++.......||.+|-=-+ ....+....|+++|||||-.+--+
T Consensus 740 ~-lRLG~~~kih~~v~e~~~--~~~~-s~ks~~~l~~~~~~~~IVa~TClgi--~~plf~~R~FD~cIiDEASQI~lP-- 811 (1100)
T KOG1805|consen 740 I-LRLGSEEKIHPDVEEFTL--TNET-SEKSYADLKKFLDQTSIVACTCLGI--NHPLFVNRQFDYCIIDEASQILLP-- 811 (1100)
T ss_pred e-eecCCccccchHHHHHhc--cccc-chhhHHHHHHHhCCCcEEEEEccCC--CchhhhccccCEEEEccccccccc--
Confidence 2 22232211 111111110 0000 0000000011122233444442211 123455667999999999876433
Q ss_pred HHHHHHhcccccceEeeecCCCC
Q psy10448 405 KFFKFLSGYSIQNKLLLTGTPLQ 427 (1001)
Q Consensus 405 k~~~al~~l~~~~rllLTGTPlq 427 (1001)
-+|--+....+..|-|-+.|
T Consensus 812 ---~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 812 ---LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred ---hhhhhhhhcceEEEeccccc
Confidence 24445667778888887765
No 252
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.87 E-value=2.9 Score=51.48 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|...+..++ ..||.-..|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 5555555555554443 47889999999999999999888644
No 253
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.85 E-value=3 Score=51.41 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+.+++ .-|+.-..|.|||..|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6666666766665543 3568999999999999999988754
No 254
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.67 E-value=3.1 Score=50.28 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|......+. + -|+.-+.|.|||-.+-+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 4444555544444443 2 3789999999999999999888643
No 255
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.51 E-value=3.6 Score=49.93 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+..++ ..|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4444444544444433 3578999999999999999988754
No 256
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.39 E-value=3.9 Score=47.27 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
|..++..|...+..++ .-++.-..|+|||..|.+|+..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 6677776766666554 467899999999999999999998654
No 257
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.36 E-value=5.6 Score=46.13 Aligned_cols=125 Identities=10% Similarity=0.127 Sum_probs=66.1
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-c---chHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-L---STIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDI 344 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~---sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~ 344 (1001)
...|.-..|.|||.++..++..+...+ . .+++|.- . ..+.||.. |+....+.+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~G--k-kVglI~aDt~RiaAvEQLk~----yae~lgipv---------------- 299 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKK--K-TVGFITTDHSRIGTVQQLQD----YVKTIGFEV---------------- 299 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--C-cEEEEecCCcchHHHHHHHH----HhhhcCCcE----------------
Confidence 346778899999999999888776443 2 3444443 2 24455553 321111111
Q ss_pred ccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcC-CceeEEEEcCccccCCcccH---HHHHHhccccc-ceE
Q psy10448 345 SWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGS-IEWAVLVVDEAHRLKSNQSK---FFKFLSGYSIQ-NKL 419 (1001)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~-~~w~~VIiDEAH~lKN~~Sk---~~~al~~l~~~-~rl 419 (1001)
++..+...+......+.. .+.++||||-+=+.-+.... +.+.+...... ..|
T Consensus 300 -----------------------~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlL 356 (436)
T PRK11889 300 -----------------------IAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICL 356 (436)
T ss_pred -----------------------EecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEE
Confidence 112344455544444443 35899999998775433322 22222222222 235
Q ss_pred eeecCCCCCCHHHHHHhhhc
Q psy10448 420 LLTGTPLQNNLEELFHLLNF 439 (1001)
Q Consensus 420 lLTGTPlqN~l~EL~~LL~f 439 (1001)
.|+||--.+.+.++...++.
T Consensus 357 VLsATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 357 TLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred EECCccChHHHHHHHHHhcC
Confidence 57777655555555444443
No 258
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=87.07 E-value=7.2 Score=48.40 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|...+..++ ..||.-..|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4445544444444443 4588999999999999999888754
No 259
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.63 E-value=4.3 Score=50.00 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI--DT-ILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~-ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|...+..++ +. |+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5566666655555543 34 889999999999999999888643
No 260
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.61 E-value=3.5 Score=49.35 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=20.9
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
.|+.-+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999999999887753
No 261
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.55 E-value=4 Score=49.26 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 253 QLEGINWLRYSWGQNI--DT-ILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~-ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
|...+..|......+. +. ++.-+.|+|||..+.+++..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 5555665555544443 23 8899999999999999998876443
No 262
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.52 E-value=4.9 Score=45.56 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.++|+|....+.+.....+++ .-++....|+||+..|.+|+..++-..
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 588999999988877766554 366799999999999999999887643
No 263
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.31 E-value=6.3 Score=44.24 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 254 LEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 254 ~egv~wL~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
.+.+..+......+ .+.+|.-+.|.|||..+-+++..+.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 23 EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 33444444333332 3589999999999999988887764
No 264
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.99 E-value=6 Score=44.58 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=25.9
Q ss_pred ceeEEEEcCccccCCcc--cHHHHHHhcccccceEeeecCCCC
Q psy10448 387 EWAVLVVDEAHRLKSNQ--SKFFKFLSGYSIQNKLLLTGTPLQ 427 (1001)
Q Consensus 387 ~w~~VIiDEAH~lKN~~--Sk~~~al~~l~~~~rllLTGTPlq 427 (1001)
...+|||||+|.+.... ..+...+.......++++|++...
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 35799999999983322 223333444556677888887544
No 265
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.85 E-value=3.7 Score=46.78 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCCC--Ce-EEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 252 YQLEGINWLRYSWGQNI--DT-ILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 252 yQ~egv~wL~~~~~~~~--g~-ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.|...+..|......++ ++ ++.-+.|.|||..|..++..+....
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 45556666666655443 34 8899999999999999998886543
No 266
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.74 E-value=4.6 Score=43.62 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
....+|.-+.|+|||--+.+++..+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356799999999999988887776654
No 267
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.63 E-value=5.2 Score=45.42 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.++|+|...-+-|...+.+++ .-++.-+.|+||+..|.+++..+.-..
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 357888887777777766544 345789999999999999999887644
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=85.54 E-value=6.8 Score=44.73 Aligned_cols=47 Identities=26% Similarity=0.288 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC----cchHHHHHHHHH
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP----LSTIINWEREFE 318 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P----~sll~qW~~E~~ 318 (1001)
-.++.-..|.|||.++..++..+...+ ..++++.. .....||..-..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHHHHH
Confidence 356788999999999888887775543 23555543 234456654443
No 269
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.43 E-value=6.3 Score=43.96 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=31.8
Q ss_pred hhhcCCCccccCCCcccHHHHHHHHHHHHhhcCC-----CCeEEEcCCCCCHHHHHHHHHH
Q psy10448 234 KYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQN-----IDTILADEMGLGKTIQTITFLY 289 (1001)
Q Consensus 234 ~~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~-----~g~ILADemGLGKTiqaIa~l~ 289 (1001)
.+-..|.|+ -+|.=.++++.|...+... .+.+|.-+.|-|||..+=-|..
T Consensus 29 ~~i~~~rWI------gY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~ 83 (302)
T PF05621_consen 29 AYIRADRWI------GYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRR 83 (302)
T ss_pred HHHhcCCee------cCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHH
Confidence 344566666 3555556666665444332 2578899999999987655554
No 270
>KOG0387|consensus
Probab=84.79 E-value=0.45 Score=58.04 Aligned_cols=47 Identities=32% Similarity=0.545 Sum_probs=37.0
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPG 811 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~ 811 (1001)
+|||++||+||+|||+| +--+.+-.-||.|.+.++|...+-..+..|
T Consensus 612 GlNLTgAnRVIIfDPdW------------------------NPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 612 GLNLTGANRVIIFDPDW------------------------NPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred ccccccCceEEEECCCC------------------------CCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 49999999999999987 234556678899999998887666666544
No 271
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=84.75 E-value=5.1 Score=50.80 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=44.0
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
+..|-+-|.+++.-+. ..+.-++|....|+|||.+.-+++..+...+ ..+++++|.....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~g---~~V~~~ApTg~Aa 409 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAAG---YRVIGAALSGKAA 409 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEEeCcHHHH
Confidence 4678899999997664 2244688999999999988777665554432 3588889977653
No 272
>PRK08116 hypothetical protein; Validated
Probab=84.69 E-value=6.7 Score=43.35 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
+.+.+|.-++|+|||..+.+++..+...+ .+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHH
Confidence 34688999999999999999999887653 3455554333343
No 273
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=84.18 E-value=1.2 Score=35.11 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=21.9
Q ss_pred eeeEEEeecccCCCcEEEEEeCCCCC
Q psy10448 141 IANRVINSKTLRDGSTIYLVKWRDLP 166 (1001)
Q Consensus 141 ~~~ri~~~~~~~~~~~~~lvKW~~L~ 166 (1001)
..-+|++.|...+|..+|||-|.|.+
T Consensus 24 E~~~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 24 EKYRVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred CeeEEEEEEEcCCCcEEEEEEecCcC
Confidence 34578899988999999999999864
No 274
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.15 E-value=7.2 Score=47.42 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|...+..|......++ ..|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445544444443332 3489999999999999999888753
No 275
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=83.71 E-value=7.2 Score=42.27 Aligned_cols=38 Identities=29% Similarity=0.264 Sum_probs=25.2
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll 310 (1001)
-+.+.-++|+|||+.+=+++.++- .. .-+.|+.|+.++
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~-~d---~~~~v~i~~~~~ 90 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN-ED---QVAVVVIDKPTL 90 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC-CC---ceEEEEecCcch
Confidence 466788999999999885555543 22 224567776655
No 276
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.64 E-value=5.9 Score=49.06 Aligned_cols=42 Identities=21% Similarity=0.045 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|......++ ..|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 5566666655555543 35889999999999999999988643
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=83.62 E-value=6.3 Score=45.68 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=34.2
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
+.-.+|.-++|.|||..++.++..+...+ +++|.|.-.....|......+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHH
Confidence 34468899999999999999887775532 457777654444554443333
No 278
>PF13173 AAA_14: AAA domain
Probab=83.53 E-value=6.4 Score=38.03 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.9
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
+.-.+|.-..|.|||..+-.++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567888999999998888887765
No 279
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.83 E-value=19 Score=41.79 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHH-Hhhc--CCCCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 250 HAYQLEGINWLR-YSWG--QNIDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 250 ~pyQ~egv~wL~-~~~~--~~~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
|+-|.+-+.-.. .... ...++++.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 555655553332 2222 335689999999999999999988776544
No 280
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=82.76 E-value=11 Score=42.72 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=39.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
+.++|+|...-..+...+.+++ .-++....|+||+..|..|+..+.-..
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 3578899888888877765554 457789999999999999999887554
No 281
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=82.76 E-value=3.9 Score=42.94 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=68.5
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDT 349 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~ 349 (1001)
.+|.-.+|.|||-++.-++.++... ..++.||-+-..-+.- .++++.|+..+.+-++......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga-~eQL~~~a~~l~vp~~~~~~~~-------------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGA-VEQLKTYAEILGVPFYVARTES-------------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHH-HHHHHHHHHHHTEEEEESSTTS--------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccH-HHHHHHHHHHhccccchhhcch--------------
Confidence 4678899999999999988888766 3444444443332221 2445555433333333211000
Q ss_pred cccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcccH---HHHHHhcc-cccceEeeecCC
Q psy10448 350 ANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSK---FFKFLSGY-SIQNKLLLTGTP 425 (1001)
Q Consensus 350 ~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk---~~~al~~l-~~~~rllLTGTP 425 (1001)
..-+.+......+..-+.++|+||-+-+.-+.... +.+.+..+ .....|.|++|-
T Consensus 67 ---------------------~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 67 ---------------------DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred ---------------------hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 00111222233344445789999999876443322 22222222 344568888887
Q ss_pred CCCCHHHHHHhhhccC
Q psy10448 426 LQNNLEELFHLLNFLT 441 (1001)
Q Consensus 426 lqN~l~EL~~LL~fL~ 441 (1001)
-+..+..+......+.
T Consensus 126 ~~~~~~~~~~~~~~~~ 141 (196)
T PF00448_consen 126 GQEDLEQALAFYEAFG 141 (196)
T ss_dssp GGHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHhhccc
Confidence 6655555554444443
No 282
>KOG0330|consensus
Probab=82.68 E-value=6 Score=45.02 Aligned_cols=127 Identities=12% Similarity=0.128 Sum_probs=75.7
Q ss_pred EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCcc-----
Q psy10448 665 YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQN----- 739 (1001)
Q Consensus 665 ~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~----- 739 (1001)
|.++-|.-....--.+++.+.. ..++++++|.+...=+.+--.+.-+..-+--.-....+|.|+..-.-..+
T Consensus 279 ylfv~~k~K~~yLV~ll~e~~g---~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv 355 (476)
T KOG0330|consen 279 YLFVPGKDKDTYLVYLLNELAG---NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILV 355 (476)
T ss_pred eEeccccccchhHHHHHHhhcC---CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEE
Confidence 5566565555555555555533 33355555554322111111111111111112234456777765543332
Q ss_pred ------ccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHH
Q psy10448 740 ------KYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAK 798 (1001)
Q Consensus 740 ------~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~ 798 (1001)
.+|+.+++..||.||-.-+-...+.+.||..|.| +.-.+..||+. +|-..+++.+
T Consensus 356 ~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrIE 416 (476)
T KOG0330|consen 356 CTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRIE 416 (476)
T ss_pred ecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHHH
Confidence 2699999999999999999999999999999999 55666779998 5555555544
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=82.44 E-value=11 Score=37.09 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=25.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
.++.-..|.|||..+..++...... .++++++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEEC
Confidence 3567789999999999998877552 345666654
No 284
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.39 E-value=6.6 Score=48.05 Aligned_cols=42 Identities=26% Similarity=0.153 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+.-|.....++. .-|+.-+.|.|||..|-+++..+...
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 3334433444433332 25789999999999999999887643
No 285
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=82.37 E-value=27 Score=35.99 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.3
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
.-++.-+.|.|||..+..++..+...
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46789999999999999999888654
No 286
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.35 E-value=7.2 Score=46.52 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.4
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
...+|.-+.|+|||..+-++...+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~ 176 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKN 176 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 3478899999999999999888877654
No 287
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=82.20 E-value=7.6 Score=44.36 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.++|+|...-+.|...+.+++ .-+++-+.|+||+..|.+|+..++-..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478888888887877766554 345799999999999999999987543
No 288
>KOG0989|consensus
Probab=82.02 E-value=3.8 Score=45.43 Aligned_cols=43 Identities=21% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcC--CCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 251 AYQLEGINWLRYSWGQ--NIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 251 pyQ~egv~wL~~~~~~--~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
-+|...|+-|...... ..+-++--..|+|||-++.+|...+..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 3688888877655544 335678889999999999999998854
No 289
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=81.50 E-value=8.6 Score=45.13 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.6
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
..+|.-..|+|||..+.++...+....
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~ 164 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENN 164 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 457899999999999999888877653
No 290
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.50 E-value=12 Score=46.18 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
|...+..|...+..+. + .|+.-+.|+|||..+..++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6666666666555543 2 38899999999999999998875
No 291
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=81.29 E-value=1.1 Score=53.17 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=37.2
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++++..+++||.+|+.+++....|++||++|.|....+.++
T Consensus 308 GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 308 GIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred CccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 58999999999999999999999999999999987766553
No 292
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.13 E-value=10 Score=45.70 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCCHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--DT-ILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~-ILADemGLGKTiqaIa~l~~l~ 292 (1001)
|...+..|......+. ++ ++.-+.|.|||..|..++..+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5666666665555543 33 6799999999999998888775
No 293
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.05 E-value=4.8 Score=49.50 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|......++ + -|+.-+.|.|||..+..++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4444444444443432 3 4789999999999999999887643
No 294
>KOG0952|consensus
Probab=81.04 E-value=1.6 Score=55.10 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=73.5
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchH----HHHHHHHHHHCCCCeEEEEeCCchhhhhh
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTI----INWEREFETWAPDFYVVTYVGDKDCRIVL 339 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll----~qW~~E~~k~~p~~~vv~y~g~~~~r~~i 339 (1001)
....+.++.+.+|.|||+.+-..+...+...+. +.+.+|+| .+++ ..|..-+.. |+++++-..|+....
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd--- 1014 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD--- 1014 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC---
Confidence 344578899999999999988777776666655 45899999 4454 456554432 466666666543221
Q ss_pred hccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCC----ceeEEEEcCccccCCc
Q psy10448 340 RDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSI----EWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 340 ~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~----~w~~VIiDEAH~lKN~ 402 (1001)
.......+++|||++............ ....+|+||.|.++..
T Consensus 1015 --------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 --------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 022345679999999876543222111 2457999999998654
No 295
>PRK08727 hypothetical protein; Validated
Probab=81.03 E-value=6.8 Score=42.28 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=21.8
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
..+|.-+.|+|||--+.+++..+...
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47889999999999888888776654
No 296
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.87 E-value=11 Score=46.39 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 254 LEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 254 ~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
...+..|.....+++ ..|+.-+.|+|||..|..++..+..
T Consensus 22 e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 22 ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 333444444444432 4567999999999999999988864
No 297
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=80.56 E-value=11 Score=49.01 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=41.7
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
.+..|-+-|.++|..+. ..+.-++|.-..|+|||.+.-++ ...+... ...+++++|.....
T Consensus 343 ~g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~~-~~~~e~~--G~~V~~~ApTGkAA 403 (988)
T PRK13889 343 RGLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGVA-REAWEAA--GYEVRGAALSGIAA 403 (988)
T ss_pred cCCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHH-HHHHHHc--CCeEEEecCcHHHH
Confidence 35689999999998665 22335788999999999875444 3343332 23478888976543
No 298
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=80.51 E-value=14 Score=45.36 Aligned_cols=42 Identities=21% Similarity=0.041 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQN---IDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~---~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|...+..+ ...|+.-+.|.|||..|.+++..+...
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444445555444343 235789999999999999999888543
No 299
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=80.40 E-value=2.1 Score=52.38 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=94.8
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHH-HHHH---
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWERE-FETW--- 320 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E-~~k~--- 320 (1001)
.....|||.+-.+-|.... -..+.+.-..-+|||...+.++.+.+... .+|+|+|.|. .....|..+ |...
T Consensus 14 ~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 3468899999887663221 34577888899999998888887776655 4689999994 455667543 3332
Q ss_pred CCCCeEEEEe-CCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc
Q psy10448 321 APDFYVVTYV-GDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 321 ~p~~~vv~y~-g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l 399 (1001)
+|.+.-.+.. ..+.....+. . .....-.+.++.... ...|.+....+|++||....
T Consensus 90 sp~l~~~~~~~~~~~~~~t~~------------------~-k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~ 146 (557)
T PF05876_consen 90 SPVLRRKLSPSKSRDSGNTIL------------------Y-KRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRY 146 (557)
T ss_pred CHHHHHHhCchhhcccCCchh------------------h-eecCCCEEEEEeCCC----CcccccCCcCEEEEechhhc
Confidence 2222211110 0000000000 0 011112244443222 33567788899999999988
Q ss_pred ----CCcccHHH---HHHhcccccceEeeecCCCCCCHHHHHHh
Q psy10448 400 ----KSNQSKFF---KFLSGYSIQNKLLLTGTPLQNNLEELFHL 436 (1001)
Q Consensus 400 ----KN~~Sk~~---~al~~l~~~~rllLTGTPlqN~l~EL~~L 436 (1001)
++..+... +-...+....++++..||.......+..+
T Consensus 147 p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 147 PDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred cccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 22333333 33445556788999999987754444433
No 300
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=80.33 E-value=6.2 Score=44.32 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCC-eEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy10448 267 NID-TILADEMGLGKTIQTITFLYSLFKEGH 296 (1001)
Q Consensus 267 ~~g-~ILADemGLGKTiqaIa~l~~l~~~~~ 296 (1001)
... -++....|.|||..|.+++..+.....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 344 788999999999999999999875543
No 301
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=80.29 E-value=3.5 Score=45.90 Aligned_cols=56 Identities=21% Similarity=0.105 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CCCCcEEEEeCcchH
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLSTI 310 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~-~~~~p~LIV~P~sll 310 (1001)
|.+-|..+|++ ..+..++-...|+|||.+.+.-+..++..+ .....+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45678888864 244566666799999999999888888766 334459999986553
No 302
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=80.17 E-value=1.2 Score=53.99 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=38.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..+++||.+|+..++....|++||++|.|....+. -|++.+
T Consensus 431 GiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai--~f~~~~ 475 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAI--VFVNEE 475 (518)
T ss_pred cCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEE--EEEchh
Confidence 699999999999999999999999999999999765444 456543
No 303
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=79.96 E-value=17 Score=42.89 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=71.5
Q ss_pred CCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccc-cccccccCCEEEE
Q psy10448 637 GLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGG-LGINLATADTVII 715 (1001)
Q Consensus 637 ~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg-~GINL~~Ad~VIi 715 (1001)
....+|||...--..=.|..+|...++.|+.++--++..+-.++-..|..+... ++|.|-|+-= .=..+..+.+||+
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEhHHhhhhhceecCCcEEEE
Confidence 345778888766555568899999999999999999999999999999987655 6777766521 2234556899999
Q ss_pred ecCCCCcchhhhhhh
Q psy10448 716 YDSDWNPHNDIQAFS 730 (1001)
Q Consensus 716 ~D~~WNP~~~iQriG 730 (1001)
|.+|-+|.-|-.-+.
T Consensus 377 Y~~P~~p~fY~El~n 391 (442)
T PF06862_consen 377 YGPPENPQFYSELLN 391 (442)
T ss_pred ECCCCChhHHHHHHh
Confidence 999999997766553
No 304
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.95 E-value=11 Score=43.66 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=27.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
.+...+|.-.+|.|||.++..++..+....... .+.+|+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit~ 175 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLTT 175 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEec
Confidence 455678899999999999999887765432212 3555543
No 305
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=79.80 E-value=1.1 Score=53.06 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=38.3
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTR 786 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~ 786 (1001)
++|+...+.||.+|+.+++....|++||++|.|+.-.+. -|++.
T Consensus 318 GiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai--~~~~~ 361 (423)
T PRK04837 318 GLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI--SLACE 361 (423)
T ss_pred CCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEE--EEeCH
Confidence 699999999999999999999999999999999876543 45544
No 306
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=79.38 E-value=12 Score=44.56 Aligned_cols=43 Identities=12% Similarity=-0.145 Sum_probs=28.0
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
.+.+|.-++|+|||..+-++...+....+.. .++.|.+...+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~-~v~yv~~~~f~~ 184 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDL-KVSYMSGDEFAR 184 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEEHHHHHH
Confidence 3477899999999998888877665543322 345544444333
No 307
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=79.37 E-value=20 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
-|+.-+.|+|||..|-.++..+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4679999999999999998877544
No 308
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=79.31 E-value=1.4 Score=52.80 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=38.5
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+.+.+.||.+|+.+++....|..||++|.|+.-.+.+ |++.+
T Consensus 398 GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~--~~~~~ 442 (475)
T PRK01297 398 GIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSIS--FAGED 442 (475)
T ss_pred CCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEE--EecHH
Confidence 6999999999999999999999999999999998765443 45443
No 309
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=79.11 E-value=10 Score=48.95 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~--~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|..-+..+...+. ...+.||.-+.|.|||..+=+++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 4444666655333 3458999999999999998888776643
No 310
>PTZ00110 helicase; Provisional
Probab=79.01 E-value=2 Score=52.58 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=39.5
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
+|++..+++||.+|+.+++....|++||++|.|.+-.+ |-|++.+
T Consensus 440 GIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 440 GLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 59999999999999999999999999999999987655 4566665
No 311
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.92 E-value=1.5 Score=52.58 Aligned_cols=41 Identities=24% Similarity=0.193 Sum_probs=38.2
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++|+..++.||.+++..++....|.+||++|.|+...+.+|
T Consensus 289 GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 289 GINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 69999999999999999999999999999999998877765
No 312
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=78.79 E-value=5 Score=38.27 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=24.4
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH
Q psy10448 271 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 271 ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll 310 (1001)
+|--+.|.|||..+-.++..+ .-+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 567789999999988888775 2346666555544
No 313
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=78.58 E-value=4.8 Score=49.27 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=56.9
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHH----HHHHCCCCeEEEEeCCchhhhhhhccc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWERE----FETWAPDFYVVTYVGDKDCRIVLRDHD 343 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E----~~k~~p~~~vv~y~g~~~~r~~i~~~e 343 (1001)
-.+..-.==-|||......+..++.... ...+++++| ..+...--+| +++|++...+....|. .+ ..
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~i- 327 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-SF- 327 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-EE-
Confidence 3455556678999988766665554322 234899998 4444444444 4567765444332331 11 00
Q ss_pred cccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCC
Q psy10448 344 ISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN 401 (1001)
.+.. ++ +.-+.+.|- .....+....+++|||||||.++.
T Consensus 328 -~f~n----G~----------kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 328 -SFPD----GS----------RSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred -EecC----CC----------ccEEEEEec----cCCCCccCCcccEEEEechhhCCH
Confidence 1110 10 111333211 222345566899999999999974
No 314
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=78.32 E-value=14 Score=46.35 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+.-|......++ + .|+.-+.|.|||..|-+++..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4445555544444432 3 4789999999999999998887543
No 315
>PRK04195 replication factor C large subunit; Provisional
Probab=78.27 E-value=16 Score=43.97 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=29.2
Q ss_pred cccHHHHHHH-HHHHHhhcC---CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 248 QLHAYQLEGI-NWLRYSWGQ---NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 248 ~L~pyQ~egv-~wL~~~~~~---~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..++.+.+.+ .|+ ..|.. ...++|.-+.|+|||..+-+++..+
T Consensus 17 vg~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 17 VGNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred cCCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3445555555 344 33333 4578999999999999888887654
No 316
>PRK13342 recombination factor protein RarA; Reviewed
Probab=78.19 E-value=11 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=19.4
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
.+.||.-+.|+|||..+-++...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368889999999998888776543
No 317
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.81 E-value=16 Score=43.30 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=25.9
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
..+++-..|.|||.++..++..+...+ ..+.||-|.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D 132 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAAD 132 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCC
Confidence 467789999999999999988776543 333444443
No 318
>PRK04132 replication factor C small subunit; Provisional
Probab=76.94 E-value=8 Score=49.32 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=32.7
Q ss_pred ceeEEEEcCccccCCc-ccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhh
Q psy10448 387 EWAVLVVDEAHRLKSN-QSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLN 438 (1001)
Q Consensus 387 ~w~~VIiDEAH~lKN~-~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~ 438 (1001)
++.+||+||||++-.. ...+.+.+.......+++|+.++...-+.-|-+-+.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~ 682 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 682 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhce
Confidence 4789999999999422 122333334445677888988876655555544443
No 319
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=76.06 E-value=20 Score=42.81 Aligned_cols=42 Identities=21% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+.+|......+. ..|+.-+.|.|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 6666777766655443 35789999999999999999888643
No 320
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=75.90 E-value=12 Score=39.11 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=58.2
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccccccccc
Q psy10448 271 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTA 350 (1001)
Q Consensus 271 ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~ 350 (1001)
++.-.|..|||..-|-.+...... ..+++|..|..- .-+..-.|..-.|.+
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD---------~R~~~~~V~Sr~G~~----------------- 58 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAID---------TRYGVGKVSSRIGLS----------------- 58 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHc---CCeEEEEecccc---------cccccceeeeccCCc-----------------
Confidence 567799999998666555444333 345888888531 111111121111111
Q ss_pred ccCCCCccccCCCccccEEEecHHHHHhhHhhhcC-CceeEEEEcCccccCCcccHHHHHHhcccc--cceEeeecC
Q psy10448 351 NRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGS-IEWAVLVVDEAHRLKSNQSKFFKFLSGYSI--QNKLLLTGT 424 (1001)
Q Consensus 351 ~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~-~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~--~~rllLTGT 424 (1001)
..-++|-+-..+......... ...++|.|||||-+.. .+...+..+.. ..++++.|.
T Consensus 59 --------------~~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 59 --------------SEAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred --------------ccceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 112344444444444444322 2267999999999853 45555555532 566777665
No 321
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.62 E-value=21 Score=45.36 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=35.8
Q ss_pred CCccccCCCcccHHHHHHHHH-HHHhhcC-C-CCeE-EEcCCCCCHHHHHHHHHHHHHH
Q psy10448 239 PPFLDDTGMQLHAYQLEGINW-LRYSWGQ-N-IDTI-LADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 239 P~~l~~~~~~L~pyQ~egv~w-L~~~~~~-~-~g~I-LADemGLGKTiqaIa~l~~l~~ 293 (1001)
|.+++ ..+.=|+-|.+.|.. |...... + .++| |.-.+|+|||.++-.++..+..
T Consensus 750 ~DYVP-D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 750 LDVVP-KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cccCC-CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44444 245567888888854 4333332 2 2344 8999999999999999877754
No 322
>PRK06893 DNA replication initiation factor; Validated
Probab=75.31 E-value=20 Score=38.60 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=21.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.+|.-..|+|||--+.+++..+...+
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 58899999999999988888776553
No 323
>PRK05642 DNA replication initiation factor; Validated
Probab=74.98 E-value=21 Score=38.47 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=20.1
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
.+.+|.-+.|+|||--+-++...+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999887777665543
No 324
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=74.92 E-value=13 Score=42.68 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHhhcCCCC-eEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 249 LHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g-~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
++|+|...-+-|......-.. -++.-..|.|||..|..++..+.-..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 467777777666654332223 45788999999999999999887644
No 325
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=74.88 E-value=14 Score=47.70 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 253 Q~egv~wL~~~~~--~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
|..-+..+...++ ...+.||.-+.|.|||..+-+++..+..
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3334666665443 3457899999999999999888876643
No 326
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.81 E-value=18 Score=37.77 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH-HHHHHHH--CCCCeEEEEeCCchhhhhhhcc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW-EREFETW--APDFYVVTYVGDKDCRIVLRDH 342 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW-~~E~~k~--~p~~~vv~y~g~~~~r~~i~~~ 342 (1001)
..+..++.-..|-|||-.|++++......+ .+++|| --+...| ..|.... .+.+.+..+ |..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~iv--QFlKg~~~~GE~~~l~~l~~v~~~~~-g~~--------- 85 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVV--QFIKGAWSTGERNLLEFGGGVEFHVM-GTG--------- 85 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEE--EEecCCCccCHHHHHhcCCCcEEEEC-CCC---------
Confidence 456788899999999999999988776654 245665 1222223 1222222 222222211 110
Q ss_pred ccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcc----cHHHHHHhcccccce
Q psy10448 343 DISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQ----SKFFKFLSGYSIQNK 418 (1001)
Q Consensus 343 e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~----Sk~~~al~~l~~~~r 418 (1001)
+.|. .....-+. -.--+.+..-...+.+-.|++||+||.-..-+.. ..+...+..-....-
T Consensus 86 -~~~~-------------~~~~~e~~-~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~e 150 (191)
T PRK05986 86 -FTWE-------------TQDRERDI-AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQH 150 (191)
T ss_pred -Cccc-------------CCCcHHHH-HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCE
Confidence 0000 00000000 0000112222345667789999999987654422 345555555455567
Q ss_pred EeeecCCCCCCHHHHHHhhhcc
Q psy10448 419 LLLTGTPLQNNLEELFHLLNFL 440 (1001)
Q Consensus 419 llLTGTPlqN~l~EL~~LL~fL 440 (1001)
++|||--....+-|+..++.-+
T Consensus 151 vVlTGR~~p~~Lie~ADlVTEm 172 (191)
T PRK05986 151 VVITGRGAPRELIEAADLVTEM 172 (191)
T ss_pred EEEECCCCCHHHHHhCchheec
Confidence 9999985544444444444333
No 327
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=74.58 E-value=2.1 Score=51.07 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=39.0
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..+++||.+|...++....|++||++|.|+.-. .|.|++.+
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 6999999999999999999999999999999998754 44566654
No 328
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=74.08 E-value=17 Score=43.17 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=26.4
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
..+|.-+.|+|||.-+-++...+....+.. .++.|.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~-~v~yi~ 167 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYIT 167 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEE
Confidence 478899999999999998888876654332 245443
No 329
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=73.29 E-value=23 Score=46.56 Aligned_cols=60 Identities=17% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
+..|-+-|.++|..+. ..+.-++|.-.-|+|||.+.-++...+...+ ..++.++|.....
T Consensus 379 ~~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G---~~V~g~ApTgkAA 438 (1102)
T PRK13826 379 HARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAAG---YRVVGGALAGKAA 438 (1102)
T ss_pred CCCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEcCcHHHH
Confidence 4679999999997653 3445578888999999988777665443332 3578888876543
No 330
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=73.07 E-value=12 Score=40.93 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHH
Q psy10448 252 YQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 318 (1001)
Q Consensus 252 yQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 318 (1001)
.++..+.-+...+.++.|.+|--.+|.|||..++|+...+...+ ..++++.-+.++.+++..+.
T Consensus 90 ~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g---~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 90 KALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAG---ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHh
Confidence 34444444444555888999999999999999999999998432 34666655566666555543
No 331
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=72.92 E-value=26 Score=43.15 Aligned_cols=26 Identities=23% Similarity=0.081 Sum_probs=21.6
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
..+|.-..|+|||--+.++...+...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~ 341 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL 341 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 37889999999999988888877653
No 332
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.26 E-value=38 Score=42.03 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g-~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
|...+..|......+. + -|+.-+.|.|||..+..++..+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444444444432 3 57899999999998888877764
No 333
>PRK10865 protein disaggregation chaperone; Provisional
Probab=71.96 E-value=18 Score=46.66 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHHHHHHhh--cCCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 256 GINWLRYSW--GQNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 256 gv~wL~~~~--~~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
-+..+...+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 355555433 34557999999999999999888876643
No 334
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.84 E-value=15 Score=43.62 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
...+|.-+.|+|||--+-+++..+...+ ..++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEee
Confidence 3578889999999999999888876542 3355443
No 335
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.80 E-value=47 Score=40.22 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
+...+|.-..|.|||.++..++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4445567789999999998888766554
No 336
>PTZ00424 helicase 45; Provisional
Probab=71.74 E-value=2.3 Score=49.61 Aligned_cols=45 Identities=31% Similarity=0.454 Sum_probs=38.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+...+.||.+|+..++....|++||++|.|..-. ++.|++.+
T Consensus 330 GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~--~i~l~~~~ 374 (401)
T PTZ00424 330 GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGV--AINFVTPD 374 (401)
T ss_pred CcCcccCCEEEEECCCCCHHHEeecccccccCCCCce--EEEEEcHH
Confidence 6999999999999999999999999999999986544 45567654
No 337
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=71.36 E-value=5.9 Score=40.89 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=32.0
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 318 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 318 (1001)
..+.|.+|.-.+|.|||..|++++..+...+ .+++.+.- ..+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~----~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITA----SDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEH----HHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeec----Cceecccc
Confidence 4677889999999999999999999888744 23555532 34445554
No 338
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=71.33 E-value=22 Score=40.57 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...++-|......+. ..||.-+.|.|||..+-+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444444444443333 35789999999999999988887543
No 339
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=71.08 E-value=2.9 Score=51.70 Aligned_cols=40 Identities=28% Similarity=0.234 Sum_probs=36.5
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
++|+..+..||.+++..|+....|.+||++|.|+...+.+
T Consensus 287 GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 287 GIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred cCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 5999999999999999999999999999999998776654
No 340
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=71.06 E-value=2.5 Score=50.49 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=38.3
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTR 786 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~ 786 (1001)
++|+...++||.+|+..++....|++||++|.|.+..+.+ |++.
T Consensus 308 GiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~--l~~~ 351 (456)
T PRK10590 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS--LVCV 351 (456)
T ss_pred CCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE--EecH
Confidence 5999999999999999999999999999999998775554 4543
No 341
>CHL00095 clpC Clp protease ATP binding subunit
Probab=71.06 E-value=22 Score=45.79 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
...+.||.-+.|.|||..+-+++..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4457899999999999999888877643
No 342
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=70.70 E-value=70 Score=37.07 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=36.4
Q ss_pred CcccHHHHHHHHHHHHhhcC---CCCeEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQ---NIDTILADEMGLGKTIQTITFLYSLFKEGH 296 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~---~~g~ILADemGLGKTiqaIa~l~~l~~~~~ 296 (1001)
..-|+-|.+.+...+..+-. ..++++.-.+|+|||.++--++..+.....
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 56778888888544333222 236899999999999999998888876543
No 343
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=70.48 E-value=3.1 Score=51.16 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=38.4
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTR 786 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~ 786 (1001)
+||+...++||.+|..|++....|.+||++|.|....+.+ |++.
T Consensus 320 GIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~--~~~~ 363 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS--FACE 363 (572)
T ss_pred CCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE--EecH
Confidence 5999999999999999999999999999999998765544 4543
No 344
>KOG0298|consensus
Probab=70.30 E-value=1.1 Score=57.41 Aligned_cols=124 Identities=26% Similarity=0.309 Sum_probs=108.6
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII 715 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi 715 (1001)
....|+|+|||+...+|+++..+...++.+.+..++ ++-...+..|.. .-|||+-++.|+-|
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~----I~clll~~~~~~~G----------- 1280 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS----IDCLLLFVSKGSKG----------- 1280 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc----ceEEEEEeccCccc-----------
Confidence 345799999999999999999999999998776553 346778888876 33899999999999
Q ss_pred ecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHH
Q psy10448 716 YDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQ 795 (1001)
Q Consensus 716 ~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~ 795 (1001)
|||+.|.|||+++|.-||+.+.||+||+|||||++++.||+|+..+||||.|+.
T Consensus 1281 --------------------------LNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~ 1334 (1394)
T KOG0298|consen 1281 --------------------------LNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILS 1334 (1394)
T ss_pred --------------------------ccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHH
Confidence 788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy10448 796 VAKRKMML 803 (1001)
Q Consensus 796 ~~~~K~~l 803 (1001)
....|...
T Consensus 1335 l~~~~ee~ 1342 (1394)
T KOG0298|consen 1335 LITSKEET 1342 (1394)
T ss_pred HhhhhHHH
Confidence 88877654
No 345
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=69.99 E-value=29 Score=39.49 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCC-eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 249 LHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g-~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
++|+|...-+-+......-.+ -++.-..|+|||..|..++..+.-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 467777776666655444344 4579999999999999999888653
No 346
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=69.71 E-value=11 Score=44.03 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
...|.+|.-+.|+|||..|-+++..+ ..+++.+....++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~ 203 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQ 203 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhH
Confidence 45678999999999999988887654 23455554444443
No 347
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=69.54 E-value=3.8 Score=50.77 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=36.3
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
++|+..++.||.+|+..++....|.+||++|.|....+.+
T Consensus 299 GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred cCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 6999999999999999999999999999999998766544
No 348
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.38 E-value=31 Score=39.06 Aligned_cols=124 Identities=22% Similarity=0.328 Sum_probs=67.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDT 349 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~ 349 (1001)
.++.---|.|||-+..=++.++...+. .+|+++--.--.-=.++++-|.....+-+..+..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~---~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~---------------- 202 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK---SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE---------------- 202 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC---eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC----------------
Confidence 345778899999877777777765542 3555554332233345566776444443333210
Q ss_pred cccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc------HHHHHHhcc--cccceEee
Q psy10448 350 ANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS------KFFKFLSGY--SIQNKLLL 421 (1001)
Q Consensus 350 ~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S------k~~~al~~l--~~~~rllL 421 (1001)
|+.+ .- .-|+.+. .-...++++|++|=|-|+-|... ++.+.+... .++|.++|
T Consensus 203 ---G~Dp---------Aa---VafDAi~----~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~ll 263 (340)
T COG0552 203 ---GADP---------AA---VAFDAIQ----AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILL 263 (340)
T ss_pred ---CCCc---------HH---HHHHHHH----HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEE
Confidence 0000 00 1233332 22345789999999999977653 333333332 34555554
Q ss_pred --ecCCCCCCHH
Q psy10448 422 --TGTPLQNNLE 431 (1001)
Q Consensus 422 --TGTPlqN~l~ 431 (1001)
=||--||.+.
T Consensus 264 vlDAttGqnal~ 275 (340)
T COG0552 264 VLDATTGQNALS 275 (340)
T ss_pred EEEcccChhHHH
Confidence 4888777654
No 349
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=69.18 E-value=26 Score=42.07 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=44.4
Q ss_pred ccCCCcccHHHHHHHHHHHHhhcCCCC------eEEEcCCCCCHHHHHHHHHHHHHH-cCCCCCcEEEEeCc
Q psy10448 243 DDTGMQLHAYQLEGINWLRYSWGQNID------TILADEMGLGKTIQTITFLYSLFK-EGHCKGPFLVSAPL 307 (1001)
Q Consensus 243 ~~~~~~L~pyQ~egv~wL~~~~~~~~g------~ILADemGLGKTiqaIa~l~~l~~-~~~~~~p~LIV~P~ 307 (1001)
++.+..|.|||...+.-|.-.+..+.+ +++...=|=|||-.+.+++.+..- ......-++|++|.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 345678999999999776544444443 578889999999887766654332 12333348888885
No 350
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=68.70 E-value=8.3 Score=46.39 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHH---cCCCCCcEEEEeCcchHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFK---EGHCKGPFLVSAPLSTIINWE 314 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~---~~~~~~p~LIV~P~sll~qW~ 314 (1001)
++.+-|-+.+. ...++-.|+.-..|+|||-.|+-=+++|+- .....+|+||+.|+.+.....
T Consensus 212 TIQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYi 276 (747)
T COG3973 212 TIQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYI 276 (747)
T ss_pred HhhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHH
Confidence 45566666653 123444677889999999999865555543 344567899999998765443
No 351
>PRK11823 DNA repair protein RadA; Provisional
Probab=68.69 E-value=19 Score=42.80 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=36.0
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
.+.-.+|.-++|.|||..++.++...... .+++|.|.-.....|......++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHc
Confidence 34446889999999999999998877543 24577777655555655444443
No 352
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=68.42 E-value=19 Score=45.83 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
...+.||.-+.|.|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45579999999999999998888777543
No 353
>PTZ00293 thymidine kinase; Provisional
Probab=68.42 E-value=32 Score=36.61 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=24.6
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 271 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 271 ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
++.-.||+|||..-|-.+..+... ..+++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 567899999998777766655433 3458888884
No 354
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=68.08 E-value=87 Score=36.53 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccccc
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISW 346 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~ 346 (1001)
++-..|.-.+|.|||-+..=++..+.......+..||-.-..=+. =..+++.++.-+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG-A~EQLk~Ya~im~v-------------------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG-AVEQLKTYADIMGV-------------------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh-HHHHHHHHHHHhCC--------------------
Confidence 555778899999999876655555442333344334443332221 12334444311100
Q ss_pred ccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccc-cCCcc-cHHHHHHhc--ccccceEeee
Q psy10448 347 EDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHR-LKSNQ-SKFFKFLSG--YSIQNKLLLT 422 (1001)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~-lKN~~-Sk~~~al~~--l~~~~rllLT 422 (1001)
. -.++.+..-+......+.. .++|.||=+-+ -++.. ..-.+++.. ......|.||
T Consensus 262 ------------------p-~~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvls 320 (407)
T COG1419 262 ------------------P-LEVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLS 320 (407)
T ss_pred ------------------c-eEEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEe
Confidence 1 1445566666666666655 48999996654 33321 111122222 2445679999
Q ss_pred cCCCCCCHHHHHHhhhccCCC
Q psy10448 423 GTPLQNNLEELFHLLNFLTPE 443 (1001)
Q Consensus 423 GTPlqN~l~EL~~LL~fL~p~ 443 (1001)
+|-=.+.+.+++..+..+...
T Consensus 321 at~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 321 ATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred cCcchHHHHHHHHHhccCCcc
Confidence 998888888888888877654
No 355
>PRK07952 DNA replication protein DnaC; Validated
Probab=68.03 E-value=21 Score=38.96 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHh---hcC-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 251 AYQLEGINWLRYS---WGQ-NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 251 pyQ~egv~wL~~~---~~~-~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
+.|..++..+... +.. ..+.+|.-..|+|||..+.+++..+...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 3466666554322 222 24678999999999999999999887653 235554 24566666654
No 356
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=67.99 E-value=22 Score=41.52 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=27.4
Q ss_pred ceeEEEEcCccccCCcc---cHHHHHHhccc-ccceEeeec--CCCC
Q psy10448 387 EWAVLVVDEAHRLKSNQ---SKFFKFLSGYS-IQNKLLLTG--TPLQ 427 (1001)
Q Consensus 387 ~w~~VIiDEAH~lKN~~---Sk~~~al~~l~-~~~rllLTG--TPlq 427 (1001)
.-++|+||-.|.+.+.. -.++-.+..+. ....++||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 35789999999997763 33444455543 334789998 6643
No 357
>CHL00206 ycf2 Ycf2; Provisional
Probab=67.74 E-value=16 Score=49.99 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=32.2
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
...+|++|.-.+|+|||..|=|++... .-|++-|....++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 355688999999999999888877643 4577777666666655
No 358
>KOG0740|consensus
Probab=67.60 E-value=10 Score=44.37 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
++.+|+-+.|.|||..+.+++... .-.|.=|.|.+|..-|.-|-++.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~------~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES------GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh------cceEeeccHHHhhhhccChHHHH
Confidence 366889999999999999888654 22467788999999887776554
No 359
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=67.40 E-value=14 Score=40.64 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 251 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 251 pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
|+....+..+......+...+|..++|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 44555555555556678889999999999999998887533 34666663
No 360
>KOG0384|consensus
Probab=67.32 E-value=1.6 Score=55.91 Aligned_cols=22 Identities=41% Similarity=0.960 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCCCccccccCCC
Q psy10448 156 TIYLVKWRDLPYDKATWEDENE 177 (1001)
Q Consensus 156 ~~~lvKW~~L~Y~~~tWe~~~~ 177 (1001)
.+|||||+|-.|=|||||+.++
T Consensus 226 ~qFlIKWkg~SyLHctWet~~~ 247 (1373)
T KOG0384|consen 226 EQFLIKWKGWSYLHCTWETESE 247 (1373)
T ss_pred hhhheeeccccceeccccchHH
Confidence 6899999999999999999876
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=67.28 E-value=48 Score=33.56 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=24.9
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
.++.-..|.|||..+..++..+...+ .+..+|-+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcC
Confidence 46778999999999999988776553 233344444
No 362
>PRK11054 helD DNA helicase IV; Provisional
Probab=67.22 E-value=13 Score=46.56 Aligned_cols=69 Identities=16% Similarity=0.046 Sum_probs=50.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC-CCcEEEEeCcchHHHHHHH-HHHHC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSAPLSTIINWERE-FETWA 321 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~-~~p~LIV~P~sll~qW~~E-~~k~~ 321 (1001)
..|.+-|.++|.. ...++++....|+|||.+.++-+.+++..+.. ...+|+++......+..++ +....
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4688999999841 23445666679999999999999998876532 3359999998777766554 44433
No 363
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=66.54 E-value=13 Score=45.20 Aligned_cols=107 Identities=22% Similarity=0.166 Sum_probs=57.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchH----HHHHHHHHHHCCCCeEEEEeCCchhhhhhh
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTI----INWEREFETWAPDFYVVTYVGDKDCRIVLR 340 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll----~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~ 340 (1001)
++-.+.|. +=-=|||...+.+|.-++..-..- .+..|+- +.+. ..-...+.+|+|..+++.-.+..
T Consensus 202 QkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI-~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~t------- 272 (668)
T PHA03372 202 QKATVFLV-PRRHGKTWFIIPIISFLLKNIIGI-SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNV------- 272 (668)
T ss_pred ccceEEEe-cccCCceehHHHHHHHHHHhhcCc-eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcE-------
Confidence 33344443 556799999888888777633222 2667765 3332 23344567899877653322110
Q ss_pred ccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCC
Q psy10448 341 DHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 341 ~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN 401 (1001)
+.+.. . ..+.-++..| ..+...+..-.|++|+|||||-++.
T Consensus 273 ---I~~s~---p----------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 273 ---ISIDH---R----------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ---EEEec---C----------CCcceeeehh----hccCccccCCCCCEEEEehhhccCH
Confidence 00000 0 0111122222 0123356667899999999999974
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.53 E-value=43 Score=38.67 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQN---IDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~---~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
|...+.-+......+ .+.++.-+.|.|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444444444444443 2577899999999998888876654
No 365
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.43 E-value=3.4 Score=51.67 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=52.2
Q ss_pred cccccccceeEeecCCC-CCcchhhHhhhhhhcCCCCeE--EEEEEEeCCCHHHHHHHHHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDW-NPHNDIQAFSRAHRIGQQNKV--MIYRFVTRNSVEERVTQVAKRKMML 803 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~W-NP~~d~QA~~RahRiGQ~k~V--~Vyrlvt~~TiEE~I~~~~~~K~~l 803 (1001)
++||..|+.||++++.+ |+..+.|++||+.|.+..+.. +.-.|++--|-+..=+..+.+++..
T Consensus 555 GIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~f 620 (732)
T TIGR00603 555 SIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRF 620 (732)
T ss_pred ccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHH
Confidence 69999999999999876 999999999999999988764 4667777777777777777766543
No 366
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=66.41 E-value=15 Score=43.16 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
...|++|.-+.|+|||..+-+++..+ ..+++.+.+..++..|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKY 219 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHh
Confidence 45689999999999999988876543 3346666554444433
No 367
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=66.10 E-value=60 Score=36.77 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
|.+++..|......++ .-++.-+.|.||+..|.+++..++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 6666667766665553 467799999999999999999987654
No 368
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=65.59 E-value=35 Score=39.55 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=18.5
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
.+.||.-..|.|||-.|-.+..+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999877666554
No 369
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=65.36 E-value=39 Score=41.91 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHH
Q psy10448 252 YQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTII 311 (1001)
Q Consensus 252 yQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~ 311 (1001)
+=.+-|+-+...+.+...++++ +=|-|||..+..++..+..... ..++|.+| .++..
T Consensus 173 ~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~ 230 (752)
T PHA03333 173 RTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCL 230 (752)
T ss_pred hhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHH
Confidence 3344455556666666656555 6799999988877666654222 34899999 34433
No 370
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=64.96 E-value=17 Score=37.07 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=36.7
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
.+++-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCCCHHHHHHHHHHc
Confidence 47888999999999999998876543 4588888766666666666554
No 371
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=64.75 E-value=36 Score=42.77 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc-CCCCCcEEEEeC-cchHHHHHHHHHHH
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAP-LSTIINWEREFETW 320 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~-~~~~~p~LIV~P-~sll~qW~~E~~k~ 320 (1001)
|-|-|.++|.+ ..+.+++-...|+|||.+.+.-+.+++.. +....-+|+|+. ......-++.+.+.
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 67889998852 34567778899999999999999998864 333344777765 44445555555543
No 372
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=64.42 E-value=26 Score=35.56 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=37.2
Q ss_pred HhhhcCCceeEEEEcCccccCCc----ccHHHHHHhcccccceEeeecCCCCCCHHHHHHhh
Q psy10448 380 VALLGSIEWAVLVVDEAHRLKSN----QSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLL 437 (1001)
Q Consensus 380 ~~~L~~~~w~~VIiDEAH~lKN~----~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL 437 (1001)
...+....+++||+||.=..-+. ...+...+..-....-++|||--.+..+-|+..++
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 34555678999999998776332 23555566655556679999986554444444333
No 373
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=64.34 E-value=86 Score=34.71 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=29.5
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC----cchHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP----LSTIINWERE 316 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P----~sll~qW~~E 316 (1001)
....+.-..|.|||..+..++..+...+ ..+.+|.- ...+.||...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~---~~v~~i~~D~~ri~~~~ql~~~ 125 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDY 125 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHHH
Confidence 4567778899999998887777665432 23444443 2456677643
No 374
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=63.62 E-value=12 Score=46.94 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc-CCCCCcEEEEeCcchH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~-~~~~~p~LIV~P~sll 310 (1001)
.|-+-|.++|.+ ..+.+++....|+|||.+.+.-+.+++.. +.....+|+|+.+.-.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHH
Confidence 477889999852 24557777789999999999999999875 3333448988885433
No 375
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=63.41 E-value=16 Score=42.29 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..|.+|.-+.|+|||..+-+++..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999988877654
No 376
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=63.39 E-value=16 Score=39.99 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=16.4
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFL 288 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l 288 (1001)
..+..+++.-+.|.|||..+-.++
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIA 37 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 356667777789999996443333
No 377
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=63.35 E-value=7.5 Score=32.36 Aligned_cols=26 Identities=19% Similarity=0.589 Sum_probs=20.5
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCC
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLP 166 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~ 166 (1001)
+.+++|+... +..|+..|||||++.+
T Consensus 3 l~~E~Ivg~~-d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGAT-DTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEE-ECTSSEEEEEEETTSS
T ss_pred CChHHHheee-cCCCcEEEEEEECCCC
Confidence 4678888863 4569999999999976
No 378
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=63.19 E-value=26 Score=42.40 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
..+|.+|.-++|.|||..+-+++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 456899999999999999888887763
No 379
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=62.69 E-value=33 Score=38.18 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
..+++-.+|.|||.++..++..+...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45677899999999999988887654
No 380
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=62.31 E-value=40 Score=40.31 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=37.1
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
.+.-.+|+-++|.|||..++.++..+...+ +++|.|..-....|......++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHHc
Confidence 344468899999999999999888776542 4588888765566665544443
No 381
>CHL00176 ftsH cell division protein; Validated
Probab=62.06 E-value=36 Score=42.42 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.8
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..|.+|.-+.|+|||..|=+++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988886543
No 382
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=61.87 E-value=20 Score=36.88 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=37.2
Q ss_pred HhhhcCCceeEEEEcCccccCCcc----cHHHHHHhcccccceEeeecCCCCCCHHHHHHhh
Q psy10448 380 VALLGSIEWAVLVVDEAHRLKSNQ----SKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLL 437 (1001)
Q Consensus 380 ~~~L~~~~w~~VIiDEAH~lKN~~----Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL 437 (1001)
...+.+-.+++||+||.-..-+.. ..+...+..-....-+.|||.-.+..+.|+..++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 345667789999999987653322 3455556555556679999985544444444433
No 383
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=61.86 E-value=38 Score=36.30 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
.+.-.+++-+.|.|||.-+..++...... ..+++.+.=.....+..+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCHHHHHHHHHHC
Confidence 34457888999999999999998776543 34567776555555666666554
No 384
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=61.77 E-value=24 Score=44.78 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
...+.||.-+.|.|||..+-++...+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568899999999999998888766543
No 385
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=61.35 E-value=7.9 Score=31.73 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=22.2
Q ss_pred eeeEEEeecccCCCcEEEEEeCCCCCCCcccccc
Q psy10448 141 IANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 174 (1001)
Q Consensus 141 ~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~ 174 (1001)
++++|+......+|...||+||+| ++..+-.
T Consensus 1 ~~~~I~gat~~~~g~l~fl~kwk~---~~~~lVp 31 (54)
T cd00034 1 LVKPISGASKSDDGELTFLAKWKD---GQASLVP 31 (54)
T ss_pred CceEEEEEEEcCCCeEEEEEEEeC---CeEEEEE
Confidence 367888765444489999999999 5555543
No 386
>KOG1133|consensus
Probab=61.17 E-value=15 Score=44.97 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
..++++-|++-.+-|+.....++-||+-.+||+|||+..|....+.+
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 46788999998888888899999999999999999998776554443
No 387
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=60.98 E-value=6.3 Score=49.01 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=36.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++++...++||.+|+..++....|++||++|.|..-.+.++
T Consensus 308 GIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 58999999999999999999999999999999987655543
No 388
>PRK13766 Hef nuclease; Provisional
Probab=60.28 E-value=4.9 Score=51.42 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.5
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhh
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRA 769 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~Ra 769 (1001)
++|+..++.||++||.|||....|+.||+
T Consensus 436 Gldi~~~~~VI~yd~~~s~~r~iQR~GR~ 464 (773)
T PRK13766 436 GLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464 (773)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 69999999999999999999999955554
No 389
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.96 E-value=50 Score=40.02 Aligned_cols=72 Identities=8% Similarity=0.132 Sum_probs=49.5
Q ss_pred EEeccHHHHHHHHHHHhhC-CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 643 EFYNMTKMLDILEDYLDGE-GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
|.+........+.+.|... |..+..++|+++..+|.+...+-..++.. +++.|++.-. .-+.....||+=+-
T Consensus 30 vlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 30 VLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred EEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEECChHHHc-CcccCCCEEEEECC
Confidence 7777777666666666543 77889999999999998887776665444 6777765322 34556667776553
No 390
>PRK06835 DNA replication protein DnaC; Validated
Probab=59.61 E-value=28 Score=39.70 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=35.5
Q ss_pred CcccHHHHHHHHHHH----HhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 247 MQLHAYQLEGINWLR----YSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~----~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
...+.++..++.++. ..-..+.+.+|.-++|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 356666666666433 2222457788999999999999999999887654
No 391
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=58.49 E-value=16 Score=46.39 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
...|.+|.-..|+|||..|-+++..+ ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 34578889999999999988887653 2457777666555544
No 392
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=58.03 E-value=41 Score=37.60 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
.|...|-..+..|.....+++ +++|... |.||+..|..|+..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 355678888888877766654 4555544 6899999999998887544
No 393
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=57.04 E-value=16 Score=44.12 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=48.6
Q ss_pred cccHHHHHHHHHHHHh--------hcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYS--------WGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~--------~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
.......+++.|.... .....|.||+-..|.|||+.|-++.... ..+|+-|-...++..|.-|.++
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 4566777788776322 2344578999999999999999888632 3456655555999999988877
Q ss_pred H
Q psy10448 320 W 320 (1001)
Q Consensus 320 ~ 320 (1001)
-
T Consensus 323 ~ 323 (494)
T COG0464 323 N 323 (494)
T ss_pred H
Confidence 4
No 394
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=56.99 E-value=75 Score=44.10 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=42.5
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-CCCcEEEEeCcchHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLSTII 311 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-~~~p~LIV~P~sll~ 311 (1001)
...|-+-|.+++..+.. ...+-.+|.--.|+|||.+.-+++..+..... ....++.++|..-..
T Consensus 965 ~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 965 MEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred cCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 34688999999976652 22356888899999999887666655432111 122477788976543
No 395
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=56.99 E-value=38 Score=42.88 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=19.2
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
.+.||.-+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999888777654
No 396
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=56.95 E-value=29 Score=40.55 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=24.7
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
.++.-.-|+|||..++..+............+||+.|
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~ 40 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARK 40 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEeh
Confidence 4566778999999988666554444312344788877
No 397
>KOG0739|consensus
Probab=56.57 E-value=32 Score=38.19 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHC
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA 321 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 321 (1001)
+|.+|.-..|+||+.-|-|++... +..|.-|...-|+..|.-|-++..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHHH
Confidence 367889999999999888776532 345777777889999988877653
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=56.50 E-value=84 Score=37.30 Aligned_cols=36 Identities=28% Similarity=0.232 Sum_probs=25.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
.+++-..|.|||.++.-++.++.... ..++.||-|-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D 138 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAAD 138 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 56788999999999999998887651 1333444443
No 399
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=56.26 E-value=40 Score=42.93 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.4
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
...+.+|.-+.|+|||..+-+++..+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Confidence 45678999999999998877765543
No 400
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=56.18 E-value=72 Score=38.34 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=19.5
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
..|.-..|.|||.++.-++..+...
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHh
Confidence 4467799999999988888766443
No 401
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=55.83 E-value=12 Score=47.47 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=43.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQ 795 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~ 795 (1001)
++++...+.||+++..-+.+...|++||++|.|+...+ +-++..+..|..++.
T Consensus 342 GIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~a--i~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 342 GVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALV--VLVARDDPLDTYLVH 394 (742)
T ss_pred cCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEE--EEEeCCChHHHHHHh
Confidence 69999999999999999999999999999999987543 335555667766544
No 402
>PRK05580 primosome assembly protein PriA; Validated
Probab=55.36 E-value=72 Score=40.22 Aligned_cols=72 Identities=8% Similarity=0.084 Sum_probs=51.7
Q ss_pred EEeccHHHHHHHHHHHhh-CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 643 EFYNMTKMLDILEDYLDG-EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~-~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
|.+........+.+.|.. .|..+..++|+++..+|.+...+...+... ++++|+..- =+.+.....||+-+-
T Consensus 195 vLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 195 VLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred EEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEeccHHh-cccccCCCEEEEECC
Confidence 777777776666666655 378899999999999998888887766544 677777432 245666677777654
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.15 E-value=1.3e+02 Score=35.62 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=23.9
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
..++--.|.|||-++..++..+...+ .+ +++|+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G--~k-V~lV~ 135 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG--FK-PCLVC 135 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CC-EEEEc
Confidence 45678899999999999888776543 33 45544
No 404
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=54.91 E-value=70 Score=43.87 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=40.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CCCCcEEEEeCcchHH
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLSTII 311 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~-~~~~p~LIV~P~sll~ 311 (1001)
..|-+-|.+++.-++. ...+-++|.-..|+|||.+.-+++..+.... .....++.++|..-..
T Consensus 834 ~~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 834 EKLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 4789999999975542 2335688899999999998655554432211 1122377788966543
No 405
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=54.84 E-value=81 Score=33.93 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHc---------CCCCCcEEEEeC
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKE---------GHCKGPFLVSAP 306 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~---------~~~~~p~LIV~P 306 (1001)
-++|+-..|+|||..++.++..+..- ....+++|+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 37899999999999999998775421 123456788873
No 406
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.54 E-value=89 Score=36.85 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l 291 (1001)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5577899999999999988765
No 407
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=54.28 E-value=63 Score=40.76 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=52.2
Q ss_pred EEeccHHH----HHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecc-ccccccccccCCEEEEec
Q psy10448 643 EFYNMTKM----LDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTR-SGGLGINLATADTVIIYD 717 (1001)
Q Consensus 643 IFsq~~~~----ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStr-agg~GINL~~Ad~VIi~D 717 (1001)
|.+..... .+.+..++...|+++..++|+++..+|...+....++... ++++|. .....+.+.....||+=+
T Consensus 315 ilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---IvVgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 315 LMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IVIGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred EEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EEEchHHHhcccchhcccceEEEec
Confidence 66665544 3455556666689999999999999999999999886555 455554 445566777787777644
Q ss_pred CC
Q psy10448 718 SD 719 (1001)
Q Consensus 718 ~~ 719 (1001)
-+
T Consensus 392 ~H 393 (681)
T PRK10917 392 QH 393 (681)
T ss_pred hh
Confidence 33
No 408
>KOG1807|consensus
Probab=53.80 E-value=39 Score=41.95 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=59.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC---CCCCcEEEEeC-cchHHHHHHHHHHHCC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAP-LSTIINWEREFETWAP 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~---~~~~p~LIV~P-~sll~qW~~E~~k~~p 322 (1001)
..|-.-|..+...+. ...-.|+.-..|+|||.+++-++..++... ...-|+||||= .+.+.|...-+..+
T Consensus 377 ~ildsSq~~A~qs~l----tyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~-- 450 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKL----TYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH-- 450 (1025)
T ss_pred eeecHHHHHHHHHHh----hhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--
Confidence 456778999987765 444578999999999999999988887654 33458999997 67788887666543
Q ss_pred CCeEEEEeCCchh
Q psy10448 323 DFYVVTYVGDKDC 335 (1001)
Q Consensus 323 ~~~vv~y~g~~~~ 335 (1001)
.-..++..|+...
T Consensus 451 qrpsImr~gsr~~ 463 (1025)
T KOG1807|consen 451 QRPSIMRQGSRFF 463 (1025)
T ss_pred CCceEEEeccccC
Confidence 2233445555443
No 409
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=53.74 E-value=10 Score=49.53 Aligned_cols=42 Identities=26% Similarity=0.177 Sum_probs=38.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYR 782 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyr 782 (1001)
++|+.....||.++..-+.....|.+|||+|.|+.-.+..|.
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 599999999999999999999999999999999988777654
No 410
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=53.49 E-value=73 Score=33.99 Aligned_cols=28 Identities=25% Similarity=0.153 Sum_probs=21.3
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGH 296 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~ 296 (1001)
..+|.-+.|+|||--.-|+...+....+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 3688999999999977777766665443
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=53.17 E-value=1.3e+02 Score=34.24 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=23.4
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
..|.-..|.|||.++..++..+...+ +.++|+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEe
Confidence 34556999999999998888776442 3355554
No 412
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=53.06 E-value=94 Score=35.01 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
-++..+-|.|||..|.+++..+..
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999999988753
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.70 E-value=81 Score=40.01 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=18.9
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
..|.-..|.|||.++.-++..+..
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~ 211 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA 211 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH
Confidence 467899999999988877766543
No 414
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=52.49 E-value=28 Score=37.03 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=25.9
Q ss_pred ceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCC
Q psy10448 387 EWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNN 429 (1001)
Q Consensus 387 ~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~ 429 (1001)
..+.+||||++.+-... ...+..+.....+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~g~---l~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY---LLLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChHH---HHHHHhhccCcceEEEECchhcc
Confidence 47899999999874221 12233344444677889998854
No 415
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=52.16 E-value=27 Score=42.04 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
|...+..|.....+++ +-++.-.=|+|||-.|=.++..+-..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 5666666655555544 45778899999999888888877443
No 416
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.76 E-value=1.1e+02 Score=36.09 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=32.1
Q ss_pred ceeEEEEcCccccCCcccHHHHHHhcc-----cccceEeeecCCCCCCHHHHHHhhhccCC
Q psy10448 387 EWAVLVVDEAHRLKSNQSKFFKFLSGY-----SIQNKLLLTGTPLQNNLEELFHLLNFLTP 442 (1001)
Q Consensus 387 ~w~~VIiDEAH~lKN~~Sk~~~al~~l-----~~~~rllLTGTPlqN~l~EL~~LL~fL~p 442 (1001)
..+.|+||.+=+..+. ......+..+ .....|+|++|--.+.+.++...+..+..
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 4678999987443322 2233333333 22445789999777777776665554443
No 417
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=51.76 E-value=28 Score=42.06 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
..|++|.-++|+|||..+-+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998887654
No 418
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.74 E-value=69 Score=37.34 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=64.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDT 349 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~ 349 (1001)
.+++-+.|.||+-.-+-++..+.... ++|.|+----+.||+-...+..-.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES~~QiklRA~RL~~~-------------------------- 145 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEESLQQIKLRADRLGLP-------------------------- 145 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcCHHHHHHHHHHhCCC--------------------------
Confidence 57799999999987776666665443 699999888889998888776310
Q ss_pred cccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCc
Q psy10448 350 ANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 350 ~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
..++.+.....+..-...+...++++||||=.|.+-+.
T Consensus 146 ---------------~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 146 ---------------TNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred ---------------ccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 12355555555555566677788999999999887543
No 419
>PHA00012 I assembly protein
Probab=51.60 E-value=27 Score=39.44 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 271 ILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 271 ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
++.--+|.|||+.|++-|...+.++
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4556789999999999777776665
No 420
>PRK05973 replicative DNA helicase; Provisional
Probab=51.44 E-value=39 Score=36.62 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=35.9
Q ss_pred hhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHH
Q psy10448 263 SWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 318 (1001)
Q Consensus 263 ~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 318 (1001)
.+..+.-.+++-.+|.|||.-++.++......+ .+++++.--....+-.+.+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G---e~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG---RTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEEEeCCHHHHHHHHH
Confidence 344556678999999999999999998776543 35777765333333333333
No 421
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=51.16 E-value=35 Score=36.27 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=38.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHc-CCCCCcEEEEeCcchHHHHHHHHHHHC
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLSTIINWEREFETWA 321 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~-~~~~~p~LIV~P~sll~qW~~E~~k~~ 321 (1001)
.+.-.+++-+.|+|||+-++.++...... +. +++.|+-.....+..+.+..+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEecCCHHHHHHHHHHcC
Confidence 34457889999999999999999877666 42 4788876666677777777653
No 422
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=50.80 E-value=66 Score=37.58 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=19.8
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
.+..+++..+.|.|||..+-.+...+...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 45556666788999997776665555443
No 423
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=50.70 E-value=25 Score=44.67 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CCCCcEEEEeCcchH-HHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLSTI-INWEREFETW 320 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~-~~~~p~LIV~P~sll-~qW~~E~~k~ 320 (1001)
.|-|-|.++|. ...+.+++....|+|||.+.+.-+.+++... ....-+|+|+-+.-. ..-..-+.+.
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 47889999984 2345678888999999999999999998753 233448888885433 3333334443
No 424
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=50.66 E-value=27 Score=44.29 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=41.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc-CCCCCcEEEEeCcch
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLST 309 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~-~~~~~p~LIV~P~sl 309 (1001)
.|-|-|.++|.+ ..+.+++-...|+|||.+.+.-+.+|... +....-+|+|+-+.-
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~k 65 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNK 65 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHH
Confidence 488999999852 34567777789999999999999999874 323334888887443
No 425
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=50.65 E-value=96 Score=36.75 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=26.0
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
-.+++-..|.|||.++.-++..+.... ..++.||-|-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecc
Confidence 367899999999999999998875322 1333455443
No 426
>PRK09087 hypothetical protein; Validated
Probab=50.01 E-value=53 Score=35.26 Aligned_cols=36 Identities=11% Similarity=0.306 Sum_probs=25.2
Q ss_pred eEEEEcCccccCCcccHHHHHHhcc-cccceEeeecC
Q psy10448 389 AVLVVDEAHRLKSNQSKFFKFLSGY-SIQNKLLLTGT 424 (1001)
Q Consensus 389 ~~VIiDEAH~lKN~~Sk~~~al~~l-~~~~rllLTGT 424 (1001)
++|+||+.|.+......++..+..+ .....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 3799999998854455566666555 33566888887
No 427
>KOG0780|consensus
Probab=50.00 E-value=38 Score=38.94 Aligned_cols=57 Identities=23% Similarity=0.145 Sum_probs=34.3
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEE
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTY 329 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y 329 (1001)
.+++-=-|.|||-++.-++.++.+.+ .++.||.+-.- -.-=-++++.|+....+-+|
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADTF-RAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcC--CceeEEeeccc-ccchHHHHHHHhHhhCCeeE
Confidence 34567789999999888888887665 34455544322 22223455566544444444
No 428
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.55 E-value=1.2e+02 Score=35.53 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-c---chHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-L---STIINWERE 316 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~---sll~qW~~E 316 (1001)
.-.+++-..|.|||-++..++..+...+ . .+.+|+- . .-+.||..-
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g--~-~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQN--R-TVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC--C-eEEEEeCCccCccHHHHHHHH
Confidence 3456777899999999999887765543 2 3444442 2 235677553
No 429
>CHL00195 ycf46 Ycf46; Provisional
Probab=49.44 E-value=28 Score=41.98 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=26.9
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
..+|.+|.-+.|+|||..|=+++..+ ..|++.+-+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~ 293 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVG 293 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhH
Confidence 45678999999999999988877654 3466666543
No 430
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=49.31 E-value=72 Score=37.35 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.0
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
..+..+.+.-+.|.|||..+-.++..+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4556677888999999987666555443
No 431
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=49.08 E-value=23 Score=40.66 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhc----CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 253 QLEGINWLRYSWG----QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 253 Q~egv~wL~~~~~----~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
..+|..-+..... .+++.+|+.++|+|||..|+++...|- ..-||..++-.
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG----~~~PF~~isgS 86 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG----EDVPFVSISGS 86 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT----TTS-EEEEEGG
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC----CCCCeeEcccc
Confidence 4444443333333 455778899999999999999888763 34577776653
No 432
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=48.97 E-value=34 Score=33.61 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=23.9
Q ss_pred HHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 260 LRYSWGQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 260 L~~~~~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
+......+.-.+|.-++|.|||.-+=+++..+
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33444455567789999999999888877765
No 433
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=48.68 E-value=35 Score=38.35 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 258 NWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 258 ~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
.+|......+.+.+++-.||+|||-.+-+++..+.
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34555556778899999999999998877776553
No 434
>PRK08939 primosomal protein DnaI; Reviewed
Probab=48.59 E-value=57 Score=36.83 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.3
Q ss_pred HHHHHHHhhc--CCCCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 256 GINWLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 256 gv~wL~~~~~--~~~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
+..|+..... .+.|.+|.-.+|+|||..+.|++..+...+
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g 184 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG 184 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3555543221 345788899999999999999999987544
No 435
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=48.52 E-value=1.1e+02 Score=43.48 Aligned_cols=61 Identities=15% Similarity=0.016 Sum_probs=43.1
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
+..|-+-|.++|.-+.. ....-.||--..|.|||-+.-+++..+...+ ..+++++|..-..
T Consensus 427 ~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G---~~V~~lAPTgrAA 487 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASEQG---YEIQIITAGSLSA 487 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHhcC---CeEEEEeCCHHHH
Confidence 46788999999976542 2334578888999999987777665543332 4588999976543
No 436
>PF12846 AAA_10: AAA-like domain
Probab=47.97 E-value=37 Score=37.30 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
+.++++.-.+|.|||..+..++..+...+ .+++|+=|..-...|
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPL 44 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHH
Confidence 35688899999999999888887777665 346666565443333
No 437
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=47.03 E-value=41 Score=38.27 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
.+.+.|.+-+ ......+.+.|++-.||+|||-..-+++..+.
T Consensus 128 ~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 128 IMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566666554 44445677899999999999998877776654
No 438
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=46.33 E-value=89 Score=44.28 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHH---HHcCCCCCcEEEEeCcchH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL---FKEGHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l---~~~~~~~~p~LIV~P~sll 310 (1001)
...|-+-|.+++..+.. ..++-+++--..|+|||.+..+++..+ +... ...++.++|.+-.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~A 1080 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEA 1080 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHH
Confidence 45789999999976541 233456778899999998885543333 2222 2347777897554
No 439
>PRK12377 putative replication protein; Provisional
Probab=45.29 E-value=73 Score=34.81 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
..+.+|.-.+|+|||-.+.+++..+...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35678899999999999999999887643
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=44.98 E-value=89 Score=37.68 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
.+.-.++.-++|.|||..++-|+......+ .++|.|.---...|-.+..+.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g---e~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK---ERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCHHHHHHHHHHc
Confidence 444578899999999999999998876654 2578877666666666666655
No 441
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.80 E-value=2e+02 Score=31.87 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=23.9
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
.++.-..|.|||.++..++..+...+ +.+++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g---~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEe
Confidence 45567999999999999988775443 2355554
No 442
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=43.75 E-value=32 Score=37.77 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 258 NWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 258 ~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
.+|......+++.+++-++|+|||-+.-+++..+-
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 44555555678899999999999999888776543
No 443
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=43.15 E-value=1.1e+02 Score=38.12 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=49.5
Q ss_pred EEeccHHHHH----HHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecc-ccccccccccCCEEEEec
Q psy10448 643 EFYNMTKMLD----ILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTR-SGGLGINLATADTVIIYD 717 (1001)
Q Consensus 643 IFsq~~~~ld----iL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStr-agg~GINL~~Ad~VIi~D 717 (1001)
|-+.....+. .+..++...|+++..++|+++..+|...++...++... ++++|. ..-..+.+.....||+=+
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---IiVgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LVVGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EEEecHHHHhccccccccceEEEec
Confidence 5555544433 44555555689999999999999999999998876655 444444 444456677777766643
Q ss_pred C
Q psy10448 718 S 718 (1001)
Q Consensus 718 ~ 718 (1001)
.
T Consensus 366 a 366 (630)
T TIGR00643 366 Q 366 (630)
T ss_pred h
Confidence 3
No 444
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=42.86 E-value=56 Score=37.76 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHhh--cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 249 LHAYQLEGINWLRYSW--GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~--~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
|-+-|..+++.+.... ..+.+.+|.-.-|+|||...=++...+... ...+++++|..+..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEecchHHHH
Confidence 5677999988875554 345567889999999999877777665432 34689999977654
No 445
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=42.86 E-value=1e+02 Score=34.76 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=17.8
Q ss_pred EEEecHHHHHhhHhhhcCCceeEEEEcCccccCCc
Q psy10448 368 VLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 368 VvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
|.+.+...-. ....+....+++||+||+-.+...
T Consensus 79 i~~~~~~~~~-~~~~~~G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 79 IQFRGADSPD-SGDNIRGFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp EEEES------SHHHHHTS--SEEEEESGGGSTTH
T ss_pred EEEecccccc-ccccccccccceeeeeecccCchH
Confidence 4555543221 233455578899999998877543
No 446
>KOG0386|consensus
Probab=42.54 E-value=22 Score=45.18 Aligned_cols=101 Identities=28% Similarity=0.364 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHh-cCCCCCcEEEEEeccccccc-----cccccCCEEEEecCCCCc
Q psy10448 649 KMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRF-NAPGASQFVFLLSTRSGGLG-----INLATADTVIIYDSDWNP 722 (1001)
Q Consensus 649 ~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~F-n~~~~~~~v~LlStragg~G-----INL~~Ad~VIi~D~~WNP 722 (1001)
..||.|-..|..-|..+..+.--+. --.++..| .-.+-....+=.+|++..+| .|-++.+.-||+=+
T Consensus 713 ELLDRiLPKLkatgHRVLlF~qMTr---lmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls---- 785 (1157)
T KOG0386|consen 713 ELLDRILPKLKATGHRVLLFSQMTR---LMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS---- 785 (1157)
T ss_pred HHHHhhhHHHHhcCcchhhHHHHHH---HHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee----
Confidence 4566677777777777666533222 12233333 32333333344678877766 46667777777644
Q ss_pred chhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhh
Q psy10448 723 HNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHR 771 (1001)
Q Consensus 723 ~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahR 771 (1001)
-|+++.| |||..|..||+||++| +-.|-+-+--|
T Consensus 786 -------tragglg-----lNlQtadtviifdsdw---np~~d~qaqdr 819 (1157)
T KOG0386|consen 786 -------TRAGGLG-----LNLQTADTVIIFDSDW---NPHQDLQAQDR 819 (1157)
T ss_pred -------ecccccc-----cchhhcceEEEecCCC---CchhHHHHHHH
Confidence 4777888 9999999999999998 66666555544
No 447
>PRK12608 transcription termination factor Rho; Provisional
Probab=42.44 E-value=1.4e+02 Score=34.62 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 256 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 256 gv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
++..|. -...+.+++|.-+.|.|||..+..++..+...
T Consensus 123 vID~l~-PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 123 VVDLVA-PIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred hhhhee-ecCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 555443 22456678888899999999988888777554
No 448
>PRK06921 hypothetical protein; Provisional
Probab=42.09 E-value=1e+02 Score=34.00 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.9
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
.+.+.+|.-++|+|||..+.+++..+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 35678899999999999999999888764
No 449
>PHA00673 acetyltransferase domain containing protein
Probab=41.86 E-value=35 Score=34.37 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=36.3
Q ss_pred eeEEEEcCccccCCcccHHHHHHhcc---cccceEeeecCCCCCCHH
Q psy10448 388 WAVLVVDEAHRLKSNQSKFFKFLSGY---SIQNKLLLTGTPLQNNLE 431 (1001)
Q Consensus 388 w~~VIiDEAH~lKN~~Sk~~~al~~l---~~~~rllLTGTPlqN~l~ 431 (1001)
.+-|.|++.||=+.-.+.+...+... ...++|.+||||..|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 56899999999888888888777654 567899999999998754
No 450
>KOG1015|consensus
Probab=41.78 E-value=12 Score=47.11 Aligned_cols=17 Identities=53% Similarity=0.978 Sum_probs=15.8
Q ss_pred cccccccceeEeecCCC
Q psy10448 741 YINLATADTVIIYDSDW 757 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~W 757 (1001)
++||.+||+|||||..|
T Consensus 1231 GiNLvAANRVIIfDasW 1247 (1567)
T KOG1015|consen 1231 GINLVAANRVIIFDASW 1247 (1567)
T ss_pred ccceeecceEEEEeccc
Confidence 49999999999999977
No 451
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=41.67 E-value=55 Score=37.18 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
+-+.|.+.+ ......+.+.+++-.+|+|||-..-+++..+
T Consensus 133 ~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 133 MTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 445566544 4444577889999999999997766666554
No 452
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=41.02 E-value=28 Score=42.32 Aligned_cols=57 Identities=21% Similarity=0.403 Sum_probs=44.9
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRK 800 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K 800 (1001)
+|++...++||.+|.-.++....+++||.+|.|.+- ..+.|++. .-|...+...++.
T Consensus 336 GiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 336 GLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred cCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 699999999999999999999999999999999554 44457776 3355555555544
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=40.71 E-value=82 Score=33.86 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=33.4
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 317 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 317 (1001)
.+.-.++.-+.|.|||..++.++..+...+ .+++.|+......+-.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHH
Confidence 455678899999999999999988876544 3467776543333333333
No 454
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=40.63 E-value=42 Score=35.06 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
...+.+++-.+|.|||....+++..+.........-++|+-
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD 77 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIID 77 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEc
Confidence 33479999999999999999999888774333333444443
No 455
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=40.56 E-value=64 Score=43.63 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHH
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 314 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~ 314 (1001)
+.+-|..+|. ..+.+.++...-|+|||.+.+.-+..++..+.....+||||=+....++.
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~ 61 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREM 61 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHH
Confidence 4567999884 36778999999999999999988877665553223488888766665543
No 456
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=39.83 E-value=1.1e+02 Score=28.03 Aligned_cols=54 Identities=11% Similarity=0.048 Sum_probs=39.3
Q ss_pred CCceeEEEec------cHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCC
Q psy10448 637 GLKESIEFYN------MTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGAS 690 (1001)
Q Consensus 637 ~~~KvIIFsq------~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~ 690 (1001)
...+++||+. +-.....+.++|...|++|..++=....+.++.+........-+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP 69 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIP 69 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 4468999975 45567788899999999999998766666677766665544333
No 457
>PHA02558 uvsW UvsW helicase; Provisional
Probab=39.37 E-value=18 Score=43.79 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=42.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCC-eEEEEEEEeCCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQN-KVMIYRFVTRNS 788 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k-~V~Vyrlvt~~T 788 (1001)
++++...+.||+..|.-+.....|.+||++|.|..| .+.||.|+-.-.
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 588999999999999999999999999999999876 689999886443
No 458
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=39.22 E-value=1.6e+02 Score=36.46 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccc-ccccccccCCEEEE
Q psy10448 650 MLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSG-GLGINLATADTVII 715 (1001)
Q Consensus 650 ~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStrag-g~GINL~~Ad~VIi 715 (1001)
..+-+..+|...|+.+..++|++++.+|.+++.+-.++..+ +++.|.|. -..+++...-.||+
T Consensus 327 H~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 327 HYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred HHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EEEEcchhhhcceeecceeEEEE
Confidence 35567778888899999999999999999999999988777 67777774 45666666666665
No 459
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=39.12 E-value=1.3e+02 Score=30.79 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 260 LRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 260 L~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
+...-.....++|.-|+|+||+..|=++-. ......+||+.|--..+-..+
T Consensus 15 ~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~---~s~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 15 AKRAASSDLPVLITGETGTGKELLARAIHN---NSPRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHHHTTSTS-EEEECSTTSSHHHHHHHHHH---CSTTTTS-EEEEETTTS-HHH
T ss_pred HHHHhCCCCCEEEEcCCCCcHHHHHHHHHH---hhhcccCCeEEEehhhhhcch
Confidence 344445567899999999999987655432 112345788888776665444
No 460
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=39.07 E-value=58 Score=38.65 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 259 WLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 259 wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
.+......+.+.||...+|+|||..|..++..+.
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344555788999999999999999988776653
No 461
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=38.89 E-value=82 Score=31.64 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=21.6
Q ss_pred EEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCch
Q psy10448 301 FLVSAPLSTIINWEREFETWAPDFYVVTYVGDKD 334 (1001)
Q Consensus 301 ~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~ 334 (1001)
.+|+|+ +|..+..+-+..-+|++.++...|+..
T Consensus 70 ~vi~CS-ALKr~YRD~LR~~~~~~~Fv~L~g~~~ 102 (161)
T COG3265 70 VVIACS-ALKRSYRDLLREANPGLRFVYLDGDFD 102 (161)
T ss_pred eEEecH-HHHHHHHHHHhccCCCeEEEEecCCHH
Confidence 344443 667777777777777776666666554
No 462
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=38.82 E-value=80 Score=38.29 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=36.1
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
.+.-.++.-++|.|||.-+..++......+ .++++|.-.....+-.+.+..+
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g---~~~~yis~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRG---ERCLLFAFEESRAQLIRNARSW 323 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCC---CcEEEEEecCCHHHHHHHHHHc
Confidence 344567799999999999999998776543 3577776655555555555544
No 463
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.75 E-value=98 Score=36.36 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=33.6
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEE
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTY 329 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y 329 (1001)
.+++-=-|.|||-++.=++.++.+ ...+|.||.|-.. -+-=.++++..+....|-+|
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~-RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTY-RPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccC-ChHHHHHHHHHHHHcCCcee
Confidence 456777899999999999988877 3345444444321 11223444444434444444
No 464
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=38.61 E-value=45 Score=40.11 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhcCCC------CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCc-EEEEeC
Q psy10448 251 AYQLEGINWLRYSWGQNI------DTILADEMGLGKTIQTITFLYSLFKEGHCKGP-FLVSAP 306 (1001)
Q Consensus 251 pyQ~egv~wL~~~~~~~~------g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p-~LIV~P 306 (1001)
|+|...+..+. .|.... .++|.-.=|-|||..+.+++.+.+--....++ ++++++
T Consensus 1 PwQ~fi~~~i~-G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~ 62 (477)
T PF03354_consen 1 PWQKFILRSIF-GWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAAN 62 (477)
T ss_pred CcHHHHHHHHh-ceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeC
Confidence 67887665553 222222 37778888999999988877655543333333 556655
No 465
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=38.40 E-value=39 Score=38.57 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.5
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..+++.+++-++|+|||..|+++...|
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 456678889999999999999998887
No 466
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=38.37 E-value=49 Score=35.20 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=28.3
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
+++.+.--+|+|||.++-.++..+.. ....+++|+=|.
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~--~~~~~~ii~D~~ 61 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLK--KKGAKVIIFDPH 61 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEcCC
Confidence 34556668999999999999999885 223457777664
No 467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.23 E-value=85 Score=34.26 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=32.0
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 308 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s 308 (1001)
.+...++.-.+|+|||+-++-|+......+ .|++.|.-..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g---e~vlyvs~~e 61 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREG---EPVLYVSTEE 61 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcC---CcEEEEEecC
Confidence 556678899999999999999999888773 3577777533
No 468
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=38.22 E-value=92 Score=33.04 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=36.7
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
+.-.+++-+.|.|||..++.++...... ..+++.+.-.....+-.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHc
Confidence 3346778899999999999998776554 34678888766666655555554
No 469
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=38.21 E-value=1e+02 Score=34.31 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=25.9
Q ss_pred ceeEEEEcCccccCCcccHHHHHHhccc--ccceEeeecCCC
Q psy10448 387 EWAVLVVDEAHRLKSNQSKFFKFLSGYS--IQNKLLLTGTPL 426 (1001)
Q Consensus 387 ~w~~VIiDEAH~lKN~~Sk~~~al~~l~--~~~rllLTGTPl 426 (1001)
.-.+||+|||.++. ......++.+. +..-+.|.|+|.
T Consensus 165 ~~~~iivDEA~~L~---~~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 165 TVRLIIVDEADRLP---YRALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred CcceeeeehhhccC---hHHHHHHHHHHHhhCceEEEecChH
Confidence 45689999999985 34455555553 344578899994
No 470
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=37.98 E-value=52 Score=41.85 Aligned_cols=54 Identities=19% Similarity=0.104 Sum_probs=40.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-CCCcEEEEeCc
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPL 307 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-~~~p~LIV~P~ 307 (1001)
.|-|-|.++|.+ ..+.+++-...|+|||.+.+.-+.+++.... ....+|+++-+
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 488999999852 3455777789999999999999999987532 22347777764
No 471
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=37.76 E-value=86 Score=33.75 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
.+...+++-+.|.|||..++-|+......+ .+++.|+--....+-.+.+..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g---e~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CcEEEEEeeCCHHHHHHHHHH
Confidence 455578899999999999999988765443 357777754444444444443
No 472
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=37.71 E-value=88 Score=33.27 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=33.9
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
.+...+++-+.|.|||..+..++......+ .+++.|.-.....+..+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g---~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDG---DPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEEccCCHHHHHHHHHH
Confidence 455678899999999999998887665432 346777654444444444333
No 473
>PRK13531 regulatory ATPase RavA; Provisional
Probab=37.69 E-value=45 Score=39.92 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
|.+.|.-+......+.+++|.+++|+|||..|-++....
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 455555555666788999999999999999998887654
No 474
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=37.44 E-value=87 Score=32.08 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=38.5
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-------CCCCcEEEEeCcchHHHHHHHHHHHC
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEG-------HCKGPFLVSAPLSTIINWEREFETWA 321 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~-------~~~~p~LIV~P~sll~qW~~E~~k~~ 321 (1001)
.+.-++++-..|.|||..++.++..+.... ...+++|+|..-....++.+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 455589999999999999999998887522 13456888887666667777776655
No 475
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=37.36 E-value=3e+02 Score=34.40 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=41.4
Q ss_pred eEEEecc----HHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccc------cC
Q psy10448 641 SIEFYNM----TKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLA------TA 710 (1001)
Q Consensus 641 vIIFsq~----~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~------~A 710 (1001)
|+|++.. ...+.+|...|+...|.|..+==. .-.+-..+....+. +. ..||||...+ -+||. .-
T Consensus 2 Vli~v~~dvDalcA~kiL~~Llk~d~I~~~l~PV~-gy~el~~~~~~~~~-~~-~~vilIncGa---~~dl~~~l~~~~~ 75 (622)
T PF02724_consen 2 VLILVALDVDALCACKILTSLLKSDNIQYSLVPVS-GYSELERAYEELDE-DI-KSVILINCGA---TVDLEEFLELDED 75 (622)
T ss_pred EEEEEcCChHHHHHHHHHHHHHHhcCCCeeEEEeC-CHHHHHHHHHHHhh-hh-ceEEEEecCc---hhhHHHHhCCCCc
Confidence 4566554 245778899999888877554211 22344445555533 22 2366765422 23333 34
Q ss_pred CEEEEecC--CCCcc
Q psy10448 711 DTVIIYDS--DWNPH 723 (1001)
Q Consensus 711 d~VIi~D~--~WNP~ 723 (1001)
-+|.++|+ |||..
T Consensus 76 ~~iyViDshRP~~L~ 90 (622)
T PF02724_consen 76 VTIYVIDSHRPWNLD 90 (622)
T ss_pred eEEEEEeCCCCccHh
Confidence 55666664 46655
No 476
>KOG0737|consensus
Probab=37.12 E-value=41 Score=38.51 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=32.9
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
...|.+|-...|+|||..|-+++... ..+|+=|-=.++..-|--|-++.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHHH
Confidence 66789999999999999888877542 12233333345556777665554
No 477
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=37.09 E-value=66 Score=36.09 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=61.3
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchH-----HHHHHHHHHHCCCCeEEEEeCCchhhhhhhccc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTI-----INWEREFETWAPDFYVVTYVGDKDCRIVLRDHD 343 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll-----~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e 343 (1001)
+++--.+|.||+--.=.+|..-+ -.+...++..|+| ..++ .-|+.++..=. |....+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~l-I~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgN-------Y~~~~~--------- 152 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQL-IQPPPETVFFITPQKDMIPPQEITAWETQLCEGN-------YDCGPD--------- 152 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCc-ccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcC-------CCCCCC---------
Confidence 67889999999953333332211 1233445788888 4444 45777765411 000000
Q ss_pred cccccccccCCCCccccCCCccccEEEecHHHHHhhHh-----------hhcCCceeEEEEcCccccCCcccHHHHHHhc
Q psy10448 344 ISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-----------LLGSIEWAVLVVDEAHRLKSNQSKFFKFLSG 412 (1001)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-----------~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~ 412 (1001)
| ...........+.|-+||+.+..+.. .-.+...-+||+|||=.--...+..+...++
T Consensus 153 ----------g-Ti~P~t~t~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHA 221 (369)
T PF02456_consen 153 ----------G-TIVPQTGTFRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHA 221 (369)
T ss_pred ----------C-eeccccccccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhc
Confidence 0 00001234456788899988876431 1123345699999987643333334444444
Q ss_pred c
Q psy10448 413 Y 413 (1001)
Q Consensus 413 l 413 (1001)
+
T Consensus 222 l 222 (369)
T PF02456_consen 222 L 222 (369)
T ss_pred C
Confidence 3
No 478
>KOG0326|consensus
Probab=37.09 E-value=18 Score=40.23 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=33.3
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQN 776 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k 776 (1001)
+++..+.|.||.||-.-|+...+.++||.+|+|---
T Consensus 385 GIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 385 GIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred ccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 378889999999999999999999999999999765
No 479
>PRK14873 primosome assembly protein PriA; Provisional
Probab=36.86 E-value=1.3e+02 Score=37.85 Aligned_cols=80 Identities=15% Similarity=0.000 Sum_probs=61.4
Q ss_pred hhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEecc
Q psy10448 568 AAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNM 647 (1001)
Q Consensus 568 ~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~ 647 (1001)
.|||......++......|..++ |...-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vL----------------------------------------------------vLvPE 197 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGAL----------------------------------------------------VVVPD 197 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEE----------------------------------------------------EEecc
Confidence 58999999999999988887776 55555
Q ss_pred HHHHHHHHHHHhhC-C-CeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccc
Q psy10448 648 TKMLDILEDYLDGE-G-YKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGG 702 (1001)
Q Consensus 648 ~~~ldiL~~~L~~~-g-i~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg 702 (1001)
......+...|... | ..+..+|+.++..+|.+.-.+...+... +++.|+++-
T Consensus 198 i~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViGtRSAv 251 (665)
T PRK14873 198 QRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVGTRSAV 251 (665)
T ss_pred hhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEEcceeE
Confidence 55555555555543 4 6789999999999999988888776554 788888753
No 480
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=36.78 E-value=1.4e+02 Score=26.85 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCceeEEEec------cHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHH
Q psy10448 637 GLKESIEFYN------MTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDR 683 (1001)
Q Consensus 637 ~~~KvIIFsq------~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~ 683 (1001)
...+++||+. +-.....+.++|...|+.|..++=....+.++.+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 3468999987 4566778889999999999999865555555555544
No 481
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=36.78 E-value=1.6e+02 Score=24.87 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=36.0
Q ss_pred eeEEEec-cHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCC
Q psy10448 640 ESIEFYN-MTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAP 687 (1001)
Q Consensus 640 KvIIFsq-~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~ 687 (1001)
|+.||+. +-.....+..+|...|+.|..++-....+.++++.+.....
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~ 49 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGR 49 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCC
Confidence 3556663 44567778888999999999999888777777777776653
No 482
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=36.49 E-value=59 Score=35.84 Aligned_cols=41 Identities=24% Similarity=0.134 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
+.+.|.+.+.++. ...++..+++-++|.|||-+.-+++..+
T Consensus 64 ~~~~~~~~l~~~~--~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLL--EKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHH--hcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 5677888876664 1233447889999999999888887765
No 483
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.12 E-value=91 Score=33.94 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=25.3
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEE--eCcchH
Q psy10448 271 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS--APLSTI 310 (1001)
Q Consensus 271 ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV--~P~sll 310 (1001)
|..--=|.|||-.+.+++..|...+. ++|+| +|.+++
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~---~VlaID~dpqN~L 44 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGE---SVLAIDLDPQNLL 44 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCC---cEEEEeCCcHHHH
Confidence 33344489999999999999877653 35554 465544
No 484
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=36.09 E-value=96 Score=32.93 Aligned_cols=29 Identities=14% Similarity=-0.030 Sum_probs=23.6
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
......+|.-+.|+|||..+.++......
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999888877654
No 485
>PF05729 NACHT: NACHT domain
Probab=35.71 E-value=54 Score=32.28 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=23.6
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCK 298 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~ 298 (1001)
.+|.-+.|.|||..+..++..+.......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~ 31 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPP 31 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccc
Confidence 56788999999999999888887766444
No 486
>KOG0385|consensus
Probab=35.38 E-value=19 Score=44.49 Aligned_cols=89 Identities=29% Similarity=0.346 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCC-CcEEEEEeccc-----cccccccccCCEEEEecCCCCcc
Q psy10448 650 MLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGA-SQFVFLLSTRS-----GGLGINLATADTVIIYDSDWNPH 723 (1001)
Q Consensus 650 ~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~-~~~v~LlStra-----gg~GINL~~Ad~VIi~D~~WNP~ 723 (1001)
.||-|-..|...|.++..+.--+. --.+++.|-.-.. ....+=-||+. .=.+.|-+....-||+=+.
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~---mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST---- 547 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTR---MLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST---- 547 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHH---HHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec----
Confidence 578888888899999887744322 3456666543211 11122223322 1234555554555555443
Q ss_pred hhhhhhhhhhhccCccccccccccceeEeecCCC
Q psy10448 724 NDIQAFSRAHRIGQQNKYINLATADTVIIYDSDW 757 (1001)
Q Consensus 724 ~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~W 757 (1001)
|++=.| +||++|..||++|++|
T Consensus 548 -------RAGGLG-----INL~aADtVIlyDSDW 569 (971)
T KOG0385|consen 548 -------RAGGLG-----INLTAADTVILYDSDW 569 (971)
T ss_pred -------cccccc-----cccccccEEEEecCCC
Confidence 444444 9999999999999997
No 487
>PRK09183 transposase/IS protein; Provisional
Probab=34.91 E-value=39 Score=37.10 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 253 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
++.++.|+ ..+.+.+|.-+.|.|||..+.++.......
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 44444553 367788999999999999999987665543
No 488
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=34.79 E-value=1.7e+02 Score=33.13 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=21.4
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
.++.+.||+-+-|+|||...|-+...+
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~Ial 113 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIAL 113 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHH
Confidence 367788999999999999877665544
No 489
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=34.13 E-value=21 Score=46.75 Aligned_cols=29 Identities=55% Similarity=0.783 Sum_probs=22.2
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhc
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRI 772 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRi 772 (1001)
+|||++|++||++|++| +-..-.=+..|+
T Consensus 553 GINLt~Ad~VIiyD~dW---NP~~d~QAidRa 581 (1033)
T PLN03142 553 GINLATADIVILYDSDW---NPQVDLQAQDRA 581 (1033)
T ss_pred CCchhhCCEEEEeCCCC---ChHHHHHHHHHh
Confidence 59999999999999997 555554555554
No 490
>PRK02362 ski2-like helicase; Provisional
Probab=34.04 E-value=40 Score=42.91 Aligned_cols=73 Identities=22% Similarity=0.163 Sum_probs=62.6
Q ss_pred eEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE----ec-----CCCCcchhhhhhhhhhh
Q psy10448 664 KYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII----YD-----SDWNPHNDIQAFSRAHR 734 (1001)
Q Consensus 664 ~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi----~D-----~~WNP~~~iQriGRi~R 734 (1001)
.+...||+++..+|..+.+.|+++.. -+|++|.+.+.|||+++.++||. || .|.++..+.|++||++|
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i---~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR 381 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLI---KVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGR 381 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCC---eEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCC
Confidence 46778999999999999999998654 48999999999999999887776 77 46777889999999999
Q ss_pred ccCcc
Q psy10448 735 IGQQN 739 (1001)
Q Consensus 735 iGq~~ 739 (1001)
.|...
T Consensus 382 ~g~d~ 386 (737)
T PRK02362 382 PGLDP 386 (737)
T ss_pred CCCCC
Confidence 88653
No 491
>KOG1942|consensus
Probab=33.93 E-value=63 Score=35.83 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=25.3
Q ss_pred HHhhcCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 261 RYSWGQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 261 ~~~~~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
...-..++..+||-..|+|||..|+++...|
T Consensus 58 k~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 58 KSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred HhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 3444467788999999999999999988776
No 492
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.80 E-value=1.4e+02 Score=30.62 Aligned_cols=120 Identities=20% Similarity=0.231 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHC--CCCeEEEEe-CCchhhhhhhccccc
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA--PDFYVVTYV-GDKDCRIVLRDHDIS 345 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~--p~~~vv~y~-g~~~~r~~i~~~e~~ 345 (1001)
...+.-.+|.|||-.+.-++..+...+..-+ =|+||. +..=. -++.++-.. |.... + .
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg--Gf~t~E---------VR~gGkR~GF~Ivdl~tg~~~~---l-----a 67 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVG--GFITPE---------VREGGKRIGFKIVDLATGEEGI---L-----A 67 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceee--eEEeee---------eecCCeEeeeEEEEccCCceEE---E-----E
Confidence 4677889999999988888877776643222 344552 22110 134444332 21110 0 0
Q ss_pred cccccccCCCCccccCCCccccEEEecHHHHHhhH--hhhcCCceeEEEEcCccccCCcccHHHHHHhcc-cccce
Q psy10448 346 WEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV--ALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGY-SIQNK 418 (1001)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~--~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l-~~~~r 418 (1001)
... . + .....+|.|.+-..+.+.... ..+. .-+++||||.--+-+..-++..++..+ ++...
T Consensus 68 ~~~---~-~-----~~rvGkY~V~v~~le~i~~~al~rA~~--~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp 132 (179)
T COG1618 68 RVG---F-S-----RPRVGKYGVNVEGLEEIAIPALRRALE--EADVIIIDEIGPMELKSKKFREAVEEVLKSGKP 132 (179)
T ss_pred EcC---C-C-----CcccceEEeeHHHHHHHhHHHHHHHhh--cCCEEEEecccchhhccHHHHHHHHHHhcCCCc
Confidence 000 0 0 133456777766666443221 1122 258999999998877666677777664 34444
No 493
>PHA00350 putative assembly protein
Probab=33.75 E-value=1.2e+02 Score=35.61 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=17.0
Q ss_pred EEEcCCCCCHHHHHHHH-HHHHHHcC
Q psy10448 271 ILADEMGLGKTIQTITF-LYSLFKEG 295 (1001)
Q Consensus 271 ILADemGLGKTiqaIa~-l~~l~~~~ 295 (1001)
++---.|.|||.-|+.. +.-.++.+
T Consensus 5 l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEecCCCCchhHHHHHHHHHHHHHCC
Confidence 44557899999999984 44444443
No 494
>PRK10646 ADP-binding protein; Provisional
Probab=33.67 E-value=89 Score=31.51 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=26.0
Q ss_pred HhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCc
Q psy10448 262 YSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGP 300 (1001)
Q Consensus 262 ~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p 300 (1001)
.....+.-.+|.-++|.|||.-+=+++..+-.......|
T Consensus 23 ~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SP 61 (153)
T PRK10646 23 KACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSP 61 (153)
T ss_pred HhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 333444446789999999999888888777333333344
No 495
>KOG0388|consensus
Probab=33.45 E-value=31 Score=42.34 Aligned_cols=90 Identities=30% Similarity=0.373 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcC-CCCCcEEEEEeccccc---cccccccCCEEEEecCCCCcch
Q psy10448 649 KMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNA-PGASQFVFLLSTRSGG---LGINLATADTVIIYDSDWNPHN 724 (1001)
Q Consensus 649 ~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~-~~~~~~v~LlStragg---~GINL~~Ad~VIi~D~~WNP~~ 724 (1001)
.+||.|-..|+..|.++..+-.-+. --.+|+.+-. .+-....+=-|+++.. +--+.|+.|..||+=+.
T Consensus 1031 ~~LDeLL~kLkaegHRvL~yfQMTk---M~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST----- 1102 (1185)
T KOG0388|consen 1031 VVLDELLPKLKAEGHRVLMYFQMTK---MIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST----- 1102 (1185)
T ss_pred eeHHHHHHHhhcCCceEEehhHHHH---HHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEec-----
Confidence 3588888888888888776633222 2334454432 2222222223333332 23467777777777554
Q ss_pred hhhhhhhhhhccCccccccccccceeEeecCCC
Q psy10448 725 DIQAFSRAHRIGQQNKYINLATADTVIIYDSDW 757 (1001)
Q Consensus 725 ~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~W 757 (1001)
|++=.| +||++|..||++|++|
T Consensus 1103 ------RAGGLG-----INLTAADTViFYdSDW 1124 (1185)
T KOG0388|consen 1103 ------RAGGLG-----INLTAADTVIFYDSDW 1124 (1185)
T ss_pred ------ccCccc-----ccccccceEEEecCCC
Confidence 444444 9999999999999988
No 496
>KOG0738|consensus
Probab=33.44 E-value=52 Score=37.93 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=34.7
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 320 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 320 (1001)
+|.++.-..|+|||+.|=|++..- ..+|.=|....+...|.-|-++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhhhhhccchHHH
Confidence 378899999999999888876532 23355555567778998887664
No 497
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=33.12 E-value=24 Score=34.44 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=16.6
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 269 DTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l 291 (1001)
+++|-+.+|+|||..+.+++..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT
T ss_pred CEeeECCCccHHHHHHHHHHHHc
Confidence 37899999999999999888765
No 498
>KOG2543|consensus
Probab=32.61 E-value=75 Score=36.66 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=76.2
Q ss_pred CCcccHHHHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPD 323 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~ 323 (1001)
++.-|.+|...+.-|...-.... ..+|--..|+|||..+-.++..+ +.++..+++... -.|+.-+++-.-.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ec-ft~~~lle~IL~~ 79 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVEC-FTYAILLEKILNK 79 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHh-ccHHHHHHHHHHH
Confidence 34578899999876652222211 23788999999999888877655 345666666432 2333333332211
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh------hhcCC-ceeEEEEcCc
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA------LLGSI-EWAVLVVDEA 396 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~------~L~~~-~w~~VIiDEA 396 (1001)
....-+.|... -+ +.+.+..... ..... .--++|+|-|
T Consensus 80 ~~~~d~dg~~~----------------------------------~~-~~en~~d~i~~l~q~~~~t~~d~~~~liLDna 124 (438)
T KOG2543|consen 80 SQLADKDGDKV----------------------------------EG-DAENFSDFIYLLVQWPAATNRDQKVFLILDNA 124 (438)
T ss_pred hccCCCchhhh----------------------------------hh-HHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence 10000111100 00 0111111111 11111 2348999999
Q ss_pred cccCCcccHHHHHHhcc-----cccceEeeecCCCC
Q psy10448 397 HRLKSNQSKFFKFLSGY-----SIQNKLLLTGTPLQ 427 (1001)
Q Consensus 397 H~lKN~~Sk~~~al~~l-----~~~~rllLTGTPlq 427 (1001)
..++...+...+.+..+ ...-+++++.++..
T Consensus 125 d~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 125 DALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred HhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 99998888877777654 23556788888753
No 499
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.56 E-value=1.4e+02 Score=37.73 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=79.4
Q ss_pred EEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHH
Q psy10448 495 VRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVL 574 (1001)
Q Consensus 495 v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~ 574 (1001)
....|+..|...+..+.... -+.+++|+.+. ..|||...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~------------------------~~~~~~Ll~Gv-----------------TGSGKTEv 233 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL------------------------GGFAPFLLDGV-----------------TGSGKTEV 233 (730)
T ss_pred cccccCHHHHHHHHHHHHhc------------------------ccccceeEeCC-----------------CCCcHHHH
Confidence 45688999999998876541 13456665442 46899999
Q ss_pred HHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHH
Q psy10448 575 LSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDIL 654 (1001)
Q Consensus 575 L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL 654 (1001)
...++.+....|..++ |-..-......+
T Consensus 234 Yl~~i~~~L~~GkqvL----------------------------------------------------vLVPEI~Ltpq~ 261 (730)
T COG1198 234 YLEAIAKVLAQGKQVL----------------------------------------------------VLVPEIALTPQL 261 (730)
T ss_pred HHHHHHHHHHcCCEEE----------------------------------------------------EEeccccchHHH
Confidence 9999999999998776 444444333333
Q ss_pred HHHHhhC-CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccc
Q psy10448 655 EDYLDGE-GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSG 701 (1001)
Q Consensus 655 ~~~L~~~-gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStrag 701 (1001)
...|..+ |.++..++++.+..+|...-.+...+... +++.|+++
T Consensus 262 ~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~---vVIGtRSA 306 (730)
T COG1198 262 LARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR---VVIGTRSA 306 (730)
T ss_pred HHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce---EEEEechh
Confidence 3334333 78899999999999999998888886654 66666654
No 500
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=32.54 E-value=68 Score=34.36 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=30.9
Q ss_pred hcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 264 WGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 264 ~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
+..+.-.+|+-.+|.|||..++.++....... ..++|++..
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 34455578899999999999999988876652 235777774
Done!