Query psy10448
Match_columns 1001
No_of_seqs 570 out of 2964
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:26:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1E-94 3.6E-99 907.3 43.7 585 136-840 142-742 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1E-75 3.6E-80 718.2 36.1 484 246-833 53-573 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.3E-68 4.6E-73 638.0 40.3 457 245-832 34-497 (500)
4 3dmq_A RNA polymerase-associat 100.0 2E-48 6.9E-53 495.3 30.1 427 245-808 150-636 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 3.2E-43 1.1E-47 413.3 26.7 426 245-804 6-492 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 1.4E-41 4.7E-46 372.2 20.0 255 475-833 13-269 (271)
7 2fwr_A DNA repair protein RAD2 100.0 3.9E-39 1.3E-43 381.0 26.4 371 246-803 91-470 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 9.9E-36 3.4E-40 358.0 30.2 464 246-809 5-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 2.8E-35 9.7E-40 369.5 29.3 420 246-809 246-770 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 3.4E-35 1.2E-39 373.3 29.2 460 246-809 246-770 (936)
11 3tbk_A RIG-I helicase domain; 100.0 1.5E-34 5.1E-39 347.2 30.5 419 247-808 3-527 (555)
12 3hgt_A HDA1 complex subunit 3; 100.0 8.3E-35 2.8E-39 318.9 17.7 214 487-798 20-248 (328)
13 2oca_A DAR protein, ATP-depend 100.0 2.6E-32 8.9E-37 325.7 23.5 349 246-794 111-465 (510)
14 4gl2_A Interferon-induced heli 100.0 2.1E-32 7.1E-37 339.0 22.6 427 246-736 5-509 (699)
15 2ykg_A Probable ATP-dependent 100.0 2.5E-31 8.4E-36 329.2 29.9 172 247-442 12-207 (696)
16 3h1t_A Type I site-specific re 100.0 2.9E-31 1E-35 322.4 25.3 348 244-737 174-545 (590)
17 1xti_A Probable ATP-dependent 100.0 3.5E-29 1.2E-33 287.4 28.1 306 248-737 30-346 (391)
18 2j0s_A ATP-dependent RNA helic 100.0 2.3E-28 8E-33 282.8 28.5 307 248-738 59-373 (410)
19 1s2m_A Putative ATP-dependent 100.0 1.6E-28 5.6E-33 283.0 25.5 304 248-738 43-355 (400)
20 1hv8_A Putative ATP-dependent 100.0 3.5E-28 1.2E-32 275.8 27.0 300 248-738 28-335 (367)
21 3eiq_A Eukaryotic initiation f 100.0 6.6E-29 2.3E-33 287.2 17.9 307 248-738 62-377 (414)
22 1fuu_A Yeast initiation factor 100.0 4.7E-29 1.6E-33 286.4 12.9 308 247-740 42-358 (394)
23 3pey_A ATP-dependent RNA helic 100.0 9.7E-28 3.3E-32 275.0 23.3 305 247-738 26-346 (395)
24 2z0m_A 337AA long hypothetical 100.0 2.5E-27 8.7E-32 265.7 23.9 290 248-738 16-313 (337)
25 2db3_A ATP-dependent RNA helic 100.0 3E-26 1E-30 267.9 32.1 306 248-739 78-398 (434)
26 2i4i_A ATP-dependent RNA helic 99.9 4.1E-26 1.4E-30 264.3 28.8 307 247-738 36-373 (417)
27 3fht_A ATP-dependent RNA helic 99.9 8.3E-26 2.9E-30 260.8 31.1 305 247-737 46-368 (412)
28 1oyw_A RECQ helicase, ATP-depe 99.9 5.4E-25 1.9E-29 262.9 23.3 301 248-740 25-335 (523)
29 3oiy_A Reverse gyrase helicase 99.9 8.5E-24 2.9E-28 245.3 29.0 296 246-737 19-350 (414)
30 3sqw_A ATP-dependent RNA helic 99.9 5.8E-24 2E-28 257.6 25.4 318 248-740 43-390 (579)
31 3fho_A ATP-dependent RNA helic 99.9 2.7E-25 9.3E-30 265.0 13.4 307 248-738 141-460 (508)
32 2v1x_A ATP-dependent DNA helic 99.9 4.4E-24 1.5E-28 258.0 23.8 310 248-742 44-368 (591)
33 3i5x_A ATP-dependent RNA helic 99.9 8.2E-24 2.8E-28 255.4 24.6 97 639-738 340-439 (563)
34 3fmp_B ATP-dependent RNA helic 99.9 5.3E-25 1.8E-29 260.6 13.0 308 247-739 113-437 (479)
35 2eyq_A TRCF, transcription-rep 99.9 4.8E-24 1.6E-28 274.9 21.8 302 245-739 600-913 (1151)
36 1gm5_A RECG; helicase, replica 99.9 6.4E-24 2.2E-28 262.3 15.5 306 245-739 365-688 (780)
37 2xgj_A ATP-dependent RNA helic 99.9 2.5E-21 8.4E-26 246.3 35.5 146 244-425 82-233 (1010)
38 3l9o_A ATP-dependent RNA helic 99.9 3.6E-20 1.2E-24 237.6 30.1 145 245-425 181-331 (1108)
39 2p6r_A Afuhel308 helicase; pro 99.8 5.1E-20 1.8E-24 228.0 24.6 156 248-435 25-190 (702)
40 2va8_A SSO2462, SKI2-type heli 99.8 9.4E-20 3.2E-24 226.2 26.4 158 248-435 30-193 (715)
41 4a4z_A Antiviral helicase SKI2 99.8 3.9E-19 1.3E-23 226.1 32.6 154 239-426 30-189 (997)
42 2zj8_A DNA helicase, putative 99.8 8.6E-20 2.9E-24 226.6 24.1 157 248-435 23-187 (720)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.2E-19 4.2E-24 229.7 25.1 156 247-428 270-441 (1038)
44 4ddu_A Reverse gyrase; topoiso 99.8 1.3E-18 4.4E-23 223.2 27.8 359 245-804 75-505 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 3.3E-18 1.1E-22 219.4 22.4 156 245-428 54-228 (1054)
46 1rif_A DAR protein, DNA helica 99.8 1.9E-18 6.7E-23 189.9 13.3 163 247-442 112-278 (282)
47 2fz4_A DNA repair protein RAD2 99.7 6.3E-17 2.2E-21 173.4 15.9 141 245-429 90-232 (237)
48 2v6i_A RNA helicase; membrane, 99.7 1.8E-16 6E-21 184.9 18.5 89 640-736 173-278 (431)
49 2jlq_A Serine protease subunit 99.7 3.4E-17 1.1E-21 192.2 12.2 90 640-737 190-299 (451)
50 2ee1_A Chromodomain helicase-D 99.7 1E-17 3.5E-22 138.8 5.1 60 132-191 4-63 (64)
51 1yks_A Genome polyprotein [con 99.7 2.1E-16 7.2E-21 184.7 16.7 89 640-736 179-286 (440)
52 1tf5_A Preprotein translocase 99.7 2E-15 6.9E-20 183.6 22.4 94 642-740 436-537 (844)
53 1nkt_A Preprotein translocase 99.7 1.8E-14 6.3E-19 174.9 29.7 94 642-740 464-609 (922)
54 2wv9_A Flavivirin protease NS2 99.6 1.4E-16 4.9E-21 194.4 9.8 108 639-772 411-519 (673)
55 1t5i_A C_terminal domain of A 99.6 1E-15 3.5E-20 155.7 12.3 97 639-738 32-128 (172)
56 2hjv_A ATP-dependent RNA helic 99.6 1.2E-15 4.1E-20 153.6 12.6 97 640-739 37-133 (163)
57 2z83_A Helicase/nucleoside tri 99.6 1.4E-15 4.7E-20 178.8 14.8 121 640-787 192-313 (459)
58 2fsf_A Preprotein translocase 99.6 1.2E-14 4E-19 176.4 22.8 93 643-740 446-575 (853)
59 2whx_A Serine protease/ntpase/ 99.6 3.1E-15 1E-19 181.5 17.4 137 640-803 357-495 (618)
60 2gxq_A Heat resistant RNA depe 99.6 5.4E-15 1.9E-19 154.0 15.8 161 248-433 23-192 (207)
61 3o8b_A HCV NS3 protease/helica 99.6 7.9E-15 2.7E-19 176.9 19.3 86 638-734 396-502 (666)
62 2jgn_A DBX, DDX3, ATP-dependen 99.6 1.2E-15 4E-20 157.2 8.9 97 639-738 47-143 (185)
63 1t6n_A Probable ATP-dependent 99.6 1.1E-14 3.6E-19 153.6 16.3 162 248-433 36-207 (220)
64 1fuk_A Eukaryotic initiation f 99.6 3.5E-15 1.2E-19 150.5 11.9 97 639-738 31-127 (165)
65 3rc3_A ATP-dependent RNA helic 99.6 4.3E-14 1.5E-18 172.2 23.4 95 642-738 324-432 (677)
66 3b6e_A Interferon-induced heli 99.6 2.4E-15 8.1E-20 157.4 10.2 132 246-401 31-176 (216)
67 1c4o_A DNA nucleotide excision 99.6 4.9E-14 1.7E-18 172.5 22.7 94 640-736 441-539 (664)
68 2p6n_A ATP-dependent RNA helic 99.6 2.6E-15 9E-20 155.3 9.0 96 640-738 56-151 (191)
69 1q0u_A Bstdead; DEAD protein, 99.6 1.7E-14 5.7E-19 152.2 15.0 162 247-433 25-198 (219)
70 4f92_B U5 small nuclear ribonu 99.6 8.8E-14 3E-18 184.8 25.3 161 248-437 926-1103(1724)
71 1vec_A ATP-dependent RNA helic 99.6 2.7E-14 9.4E-19 148.6 16.3 155 248-426 25-188 (206)
72 2oxc_A Probable ATP-dependent 99.6 2.7E-14 9.1E-19 151.9 16.0 156 245-425 42-208 (230)
73 2rb4_A ATP-dependent RNA helic 99.6 6.5E-15 2.2E-19 150.0 10.3 118 637-790 33-150 (175)
74 2pl3_A Probable ATP-dependent 99.5 3.4E-14 1.2E-18 151.5 15.3 155 247-426 46-213 (236)
75 4f92_B U5 small nuclear ribonu 99.5 2.3E-13 7.9E-18 180.8 26.1 159 247-435 78-262 (1724)
76 1qde_A EIF4A, translation init 99.5 5.9E-14 2E-18 148.2 16.4 154 248-426 36-197 (224)
77 2xau_A PRE-mRNA-splicing facto 99.5 1.9E-14 6.6E-19 178.7 14.4 106 639-745 304-440 (773)
78 3ber_A Probable ATP-dependent 99.5 4.5E-14 1.5E-18 152.3 15.3 155 248-426 65-228 (249)
79 2yjt_D ATP-dependent RNA helic 99.3 8.5E-16 2.9E-20 155.8 0.0 101 639-742 31-131 (170)
80 3eaq_A Heat resistant RNA depe 99.5 4E-14 1.4E-18 148.9 11.9 98 639-739 32-129 (212)
81 1wrb_A DJVLGB; RNA helicase, D 99.5 1.5E-13 5E-18 148.2 16.0 155 248-426 45-220 (253)
82 3bor_A Human initiation factor 99.5 1.1E-13 3.7E-18 148.0 14.4 156 248-426 52-215 (237)
83 2d7d_A Uvrabc system protein B 99.5 6.7E-13 2.3E-17 162.4 23.3 93 640-735 447-544 (661)
84 3jux_A Protein translocase sub 99.5 4.2E-12 1.4E-16 151.3 25.2 96 640-740 476-579 (822)
85 3dkp_A Probable ATP-dependent 99.4 1.4E-12 4.7E-17 139.8 16.5 155 248-425 51-220 (245)
86 3iuy_A Probable ATP-dependent 99.4 1.5E-12 5.1E-17 137.9 15.4 154 248-425 42-208 (228)
87 2epb_A Chromodomain-helicase-D 99.4 1.2E-13 4.2E-18 116.8 5.1 56 135-193 7-67 (68)
88 3i32_A Heat resistant RNA depe 99.4 4.7E-13 1.6E-17 148.0 11.1 97 639-738 29-125 (300)
89 3fe2_A Probable ATP-dependent 99.4 6.5E-12 2.2E-16 134.5 15.5 154 248-425 51-217 (242)
90 3ly5_A ATP-dependent RNA helic 99.4 5.3E-12 1.8E-16 137.1 14.9 155 248-426 76-243 (262)
91 2b2y_A CHD-1, chromodomain-hel 99.3 3.3E-13 1.1E-17 137.5 1.4 100 79-193 85-186 (187)
92 3fmo_B ATP-dependent RNA helic 99.2 9.7E-11 3.3E-15 129.7 14.3 155 247-426 113-278 (300)
93 2h1e_A Chromo domain protein 1 99.1 1.1E-11 3.8E-16 125.2 3.4 57 135-191 116-176 (177)
94 2vl7_A XPD; helicase, unknown 99.1 7.9E-09 2.7E-13 123.6 27.9 123 640-780 386-516 (540)
95 2ipc_A Preprotein translocase 98.9 4.4E-08 1.5E-12 119.1 19.6 146 245-435 76-237 (997)
96 4hae_A CDY-like 2, chromodomai 98.8 3.5E-10 1.2E-14 98.9 -1.4 64 127-191 11-74 (81)
97 2rsn_A Chromo domain-containin 98.8 4E-09 1.4E-13 90.8 4.3 55 138-193 20-74 (75)
98 2dnt_A Chromodomain protein, Y 98.7 6.3E-09 2.2E-13 90.6 5.0 56 138-194 12-67 (78)
99 3llm_A ATP-dependent RNA helic 98.7 1.1E-07 3.8E-12 101.0 13.5 154 247-427 60-220 (235)
100 3crv_A XPD/RAD3 related DNA he 98.6 8.3E-08 2.8E-12 115.2 12.3 148 246-401 1-187 (551)
101 2dnv_A Chromobox protein homol 98.6 4.6E-08 1.6E-12 81.7 5.7 51 140-193 11-61 (64)
102 1g6z_A CLR4 protein; transfera 98.5 3.1E-08 1.1E-12 84.4 3.0 55 138-194 8-63 (70)
103 1q3l_A Heterochromatin protein 98.5 4.5E-08 1.6E-12 82.6 3.8 54 137-193 14-67 (69)
104 1ap0_A Modifier protein 1; chr 98.5 1.4E-07 4.8E-12 80.9 6.3 53 137-193 12-64 (73)
105 3f2u_A Chromobox protein homol 98.5 7.1E-08 2.4E-12 78.1 3.6 51 140-193 3-53 (55)
106 3fdt_A Chromobox protein homol 98.4 8.8E-08 3E-12 78.7 3.6 51 140-193 4-54 (59)
107 3i91_A Chromobox protein homol 98.4 1.4E-07 4.7E-12 76.1 4.1 50 140-192 4-53 (54)
108 2d9u_A Chromobox protein homol 98.4 2.2E-07 7.6E-12 79.9 4.9 53 137-193 9-61 (74)
109 1pfb_A Polycomb protein; chrom 98.4 1.6E-07 5.4E-12 76.0 3.7 50 140-192 4-53 (55)
110 3h91_A Chromobox protein homol 98.4 2E-07 7E-12 75.1 4.0 50 140-192 4-53 (54)
111 2k1b_A Chromobox protein homol 98.4 3.2E-07 1.1E-11 78.2 5.0 52 137-192 20-71 (73)
112 1x3p_A Cpsrp43; chromo-2 domai 98.3 4.5E-08 1.5E-12 78.6 -0.7 47 141-192 2-49 (54)
113 3lwe_A M-phase phosphoprotein 98.3 8.5E-08 2.9E-12 79.6 0.8 52 140-193 5-56 (62)
114 3mts_A Histone-lysine N-methyl 98.3 3.5E-07 1.2E-11 76.2 4.1 49 141-192 2-50 (64)
115 1pdq_A Polycomb protein; methy 98.3 2.3E-07 7.9E-12 78.9 3.0 52 138-192 19-70 (72)
116 2kvm_A Chromobox protein homol 98.3 5.1E-07 1.7E-11 77.7 5.0 51 140-193 14-64 (74)
117 2rso_A Chromatin-associated pr 98.2 1.6E-06 5.5E-11 77.6 6.4 56 137-193 28-85 (92)
118 3g7l_A Chromo domain-containin 98.2 1.3E-06 4.4E-11 72.2 4.7 51 138-191 6-57 (61)
119 4a15_A XPD helicase, ATP-depen 98.1 4.1E-06 1.4E-10 101.5 8.0 83 247-331 2-87 (620)
120 3e1s_A Exodeoxyribonuclease V, 96.9 0.0043 1.5E-07 74.4 12.3 132 246-428 187-318 (574)
121 4b3f_X DNA-binding protein smu 96.9 0.0026 8.7E-08 77.6 10.5 70 246-321 187-257 (646)
122 2jgn_A DBX, DDX3, ATP-dependen 96.8 0.00056 1.9E-08 69.6 3.1 45 741-787 109-153 (185)
123 2h1e_A Chromo domain protein 1 96.7 0.00037 1.3E-08 70.1 1.6 52 139-191 12-83 (177)
124 3upu_A ATP-dependent DNA helic 96.7 0.009 3.1E-07 69.6 13.3 63 247-311 24-87 (459)
125 1t5i_A C_terminal domain of A 96.7 0.00082 2.8E-08 67.4 3.7 44 741-786 94-137 (172)
126 2hjv_A ATP-dependent RNA helic 96.6 0.00046 1.6E-08 68.5 1.3 55 741-799 98-152 (163)
127 2gk6_A Regulator of nonsense t 96.6 0.011 3.8E-07 71.6 13.4 166 247-428 179-376 (624)
128 2yjt_D ATP-dependent RNA helic 95.5 0.0004 1.4E-08 69.5 0.0 41 741-781 93-133 (170)
129 2p6n_A ATP-dependent RNA helic 96.5 0.0011 3.7E-08 67.9 2.9 45 741-787 117-161 (191)
130 3mwy_W Chromo domain-containin 96.4 0.00075 2.6E-08 84.4 1.1 36 741-779 638-673 (800)
131 1fuk_A Eukaryotic initiation f 96.3 0.0014 4.7E-08 65.1 2.6 47 741-789 93-139 (165)
132 2xzl_A ATP-dependent helicase 96.2 0.022 7.7E-07 70.8 13.3 164 247-427 359-553 (802)
133 2wjy_A Regulator of nonsense t 96.2 0.024 8.3E-07 70.4 13.4 166 247-428 355-552 (800)
134 1w36_D RECD, exodeoxyribonucle 96.2 0.023 7.8E-07 68.6 12.7 147 250-429 151-302 (608)
135 2b2y_C CHD-1, chromodomain-hel 95.7 0.0011 3.9E-08 60.9 -1.1 44 146-191 49-96 (115)
136 2o0j_A Terminase, DNA packagin 95.6 0.062 2.1E-06 60.8 12.0 148 246-428 161-316 (385)
137 2b2y_A CHD-1, chromodomain-hel 95.2 0.0079 2.7E-07 61.0 2.8 39 153-192 55-97 (187)
138 2orw_A Thymidine kinase; TMTK, 95.1 0.039 1.3E-06 55.8 7.6 35 270-307 6-40 (184)
139 2rb4_A ATP-dependent RNA helic 95.0 0.016 5.4E-07 57.9 4.3 37 741-777 97-133 (175)
140 3eaq_A Heat resistant RNA depe 94.8 0.012 4.2E-07 60.9 3.1 54 741-798 94-147 (212)
141 1hv8_A Putative ATP-dependent 94.8 0.0073 2.5E-07 67.1 1.3 47 741-789 301-347 (367)
142 1xti_A Probable ATP-dependent 94.7 0.012 4E-07 66.3 2.8 57 741-800 313-369 (391)
143 3cpe_A Terminase, DNA packagin 94.6 0.1 3.5E-06 62.7 10.8 152 246-428 161-316 (592)
144 2b8t_A Thymidine kinase; deoxy 94.4 0.38 1.3E-05 50.1 13.2 37 267-306 12-48 (223)
145 3vkw_A Replicase large subunit 94.3 0.049 1.7E-06 62.5 6.6 107 270-427 164-271 (446)
146 3lfu_A DNA helicase II; SF1 he 94.1 0.26 8.9E-06 59.5 13.2 68 248-321 9-78 (647)
147 2j0s_A ATP-dependent RNA helic 94.1 0.018 6.3E-07 65.3 2.6 46 741-788 339-384 (410)
148 1s2m_A Putative ATP-dependent 94.1 0.017 5.8E-07 65.3 2.3 45 741-787 321-365 (400)
149 3i32_A Heat resistant RNA depe 93.8 0.048 1.7E-06 59.7 5.0 122 640-788 5-136 (300)
150 1a5t_A Delta prime, HOLB; zinc 93.7 0.31 1.1E-05 53.9 11.7 46 249-294 3-51 (334)
151 1fuu_A Yeast initiation factor 93.3 0.015 5.1E-07 65.4 0.0 45 741-787 322-366 (394)
152 1xx6_A Thymidine kinase; NESG, 93.3 0.28 9.7E-06 49.8 9.5 35 270-307 11-45 (191)
153 3eiq_A Eukaryotic initiation f 93.1 0.032 1.1E-06 63.2 2.4 45 741-787 343-387 (414)
154 2j9r_A Thymidine kinase; TK1, 93.0 0.38 1.3E-05 49.7 9.9 34 271-307 32-65 (214)
155 2i4i_A ATP-dependent RNA helic 92.8 0.044 1.5E-06 62.2 2.9 45 741-787 339-383 (417)
156 3pey_A ATP-dependent RNA helic 92.7 0.042 1.4E-06 61.6 2.5 41 741-781 306-352 (395)
157 3syl_A Protein CBBX; photosynt 92.2 0.21 7.1E-06 54.2 7.4 40 267-306 67-107 (309)
158 2db3_A ATP-dependent RNA helic 91.9 0.064 2.2E-06 61.7 2.8 44 741-786 363-406 (434)
159 4a15_A XPD helicase, ATP-depen 91.6 0.37 1.3E-05 58.1 9.2 120 643-781 453-580 (620)
160 3kup_A Chromobox protein homol 91.5 0.087 3E-06 43.7 2.4 34 140-174 13-46 (65)
161 1l8q_A Chromosomal replication 91.2 0.95 3.3E-05 49.5 11.3 44 267-313 37-80 (324)
162 2fmm_A Chromobox protein homol 91.0 0.067 2.3E-06 45.6 1.3 49 140-191 16-65 (74)
163 3fht_A ATP-dependent RNA helic 90.3 0.21 7E-06 56.3 5.0 57 741-800 329-391 (412)
164 3u61_B DNA polymerase accessor 90.2 0.97 3.3E-05 49.3 10.2 51 387-437 105-157 (324)
165 2p65_A Hypothetical protein PF 89.7 0.99 3.4E-05 44.1 9.0 27 267-293 43-69 (187)
166 1jbk_A CLPB protein; beta barr 89.5 1.2 4.2E-05 43.5 9.5 27 267-293 43-69 (195)
167 2orv_A Thymidine kinase; TP4A 89.2 0.77 2.6E-05 47.9 7.8 35 270-307 22-56 (234)
168 3eie_A Vacuolar protein sortin 88.5 0.74 2.5E-05 50.5 7.6 37 267-309 51-87 (322)
169 1sxj_D Activator 1 41 kDa subu 88.5 0.79 2.7E-05 50.4 7.9 33 260-292 49-83 (353)
170 3sqw_A ATP-dependent RNA helic 87.7 0.28 9.6E-06 58.6 3.8 55 741-799 354-408 (579)
171 3i3c_A Chromobox protein homol 87.6 0.16 5.5E-06 43.2 1.1 33 140-173 23-55 (75)
172 2chg_A Replication factor C sm 87.5 3.8 0.00013 41.0 11.8 26 268-293 39-64 (226)
173 3p7j_A Heterochromatin protein 87.5 0.22 7.6E-06 43.5 2.0 55 134-192 21-76 (87)
174 3i5x_A ATP-dependent RNA helic 87.4 0.3 1E-05 57.9 3.8 158 248-426 94-275 (563)
175 2gno_A DNA polymerase III, gam 87.0 1.4 4.8E-05 48.0 8.6 38 253-290 2-41 (305)
176 2qp9_X Vacuolar protein sortin 86.9 0.78 2.7E-05 51.2 6.6 25 267-291 84-108 (355)
177 3bos_A Putative DNA replicatio 86.6 0.7 2.4E-05 47.5 5.7 29 266-294 51-79 (242)
178 3q6s_A Chromobox protein homol 86.2 0.29 9.8E-06 42.1 1.9 50 140-192 10-60 (78)
179 1njg_A DNA polymerase III subu 85.9 4.9 0.00017 40.6 11.7 44 249-292 27-70 (250)
180 4b4t_J 26S protease regulatory 85.9 1.5 5E-05 49.7 8.1 47 265-317 180-226 (405)
181 3h4m_A Proteasome-activating n 85.9 0.9 3.1E-05 48.5 6.2 26 265-290 49-74 (285)
182 2qby_B CDC6 homolog 3, cell di 85.8 2.3 7.9E-05 47.2 9.9 46 249-294 24-72 (384)
183 3h1t_A Type I site-specific re 85.6 0.22 7.7E-06 59.5 1.4 44 741-784 512-558 (590)
184 1oyw_A RECQ helicase, ATP-depe 85.3 0.37 1.3E-05 56.8 3.0 41 741-781 299-339 (523)
185 1iqp_A RFCS; clamp loader, ext 85.0 1.5 5.3E-05 47.3 7.7 42 250-292 30-71 (327)
186 3crv_A XPD/RAD3 related DNA he 84.6 4.1 0.00014 48.1 11.7 115 643-780 398-526 (551)
187 1w4r_A Thymidine kinase; type 83.9 1.9 6.4E-05 43.8 7.1 35 270-307 23-57 (195)
188 3e2i_A Thymidine kinase; Zn-bi 83.7 2.2 7.5E-05 44.0 7.5 35 270-307 31-65 (219)
189 2v1u_A Cell division control p 83.1 2.5 8.6E-05 46.7 8.6 44 250-293 24-70 (387)
190 2z4s_A Chromosomal replication 83.0 6.2 0.00021 45.2 12.0 41 267-308 130-170 (440)
191 2r2a_A Uncharacterized protein 82.7 0.59 2E-05 47.7 2.9 22 270-291 8-29 (199)
192 3vfd_A Spastin; ATPase, microt 82.7 2.1 7.3E-05 48.1 7.8 40 267-312 148-187 (389)
193 1jr3_A DNA polymerase III subu 82.0 6 0.00021 43.5 11.1 43 250-292 21-63 (373)
194 3fho_A ATP-dependent RNA helic 81.9 0.46 1.6E-05 55.7 1.9 41 741-781 420-466 (508)
195 2v1x_A ATP-dependent DNA helic 80.9 0.67 2.3E-05 55.5 2.9 41 741-781 330-370 (591)
196 1sxj_B Activator 1 37 kDa subu 80.7 3.9 0.00013 43.9 8.8 24 269-292 44-67 (323)
197 2bjv_A PSP operon transcriptio 80.7 2.7 9.3E-05 44.2 7.3 44 259-305 21-64 (265)
198 2qz4_A Paraplegin; AAA+, SPG7, 80.6 3.9 0.00013 42.6 8.5 26 266-291 38-63 (262)
199 1xwi_A SKD1 protein; VPS4B, AA 80.0 1.3 4.3E-05 48.7 4.5 25 267-291 45-69 (322)
200 3t15_A Ribulose bisphosphate c 79.8 2.9 9.8E-05 45.1 7.2 36 268-309 37-72 (293)
201 2zan_A Vacuolar protein sortin 79.2 2 6.7E-05 49.5 5.9 40 267-311 167-206 (444)
202 3fmp_B ATP-dependent RNA helic 78.6 0.41 1.4E-05 55.5 0.0 40 741-780 396-441 (479)
203 2xb0_X Chromo domain-containin 78.5 0.5 1.7E-05 50.4 0.6 38 941-978 4-41 (270)
204 1fnn_A CDC6P, cell division co 76.9 17 0.00059 39.9 12.9 43 250-292 22-69 (389)
205 4a2p_A RIG-I, retinoic acid in 76.5 0.68 2.3E-05 54.3 1.1 28 741-768 466-493 (556)
206 3cf0_A Transitional endoplasmi 75.6 4.5 0.00015 43.7 7.2 40 265-310 47-86 (301)
207 2chq_A Replication factor C sm 75.5 2.5 8.4E-05 45.5 5.2 24 269-292 40-63 (319)
208 2eyq_A TRCF, transcription-rep 74.5 1.1 3.7E-05 58.0 2.2 45 741-787 877-922 (1151)
209 4b4t_L 26S protease subunit RP 73.9 2.8 9.7E-05 48.0 5.3 44 265-314 213-256 (437)
210 1d2n_A N-ethylmaleimide-sensit 73.4 7.2 0.00025 41.1 8.1 25 267-291 64-88 (272)
211 4b4c_A Chromodomain-helicase-D 73.4 1.1 3.7E-05 46.1 1.5 39 940-978 7-45 (211)
212 4a2q_A RIG-I, retinoic acid in 72.7 0.98 3.4E-05 56.1 1.1 28 741-768 707-734 (797)
213 3d8b_A Fidgetin-like protein 1 72.6 2.2 7.5E-05 47.5 3.9 26 266-291 116-141 (357)
214 2z83_A Helicase/nucleoside tri 72.3 1 3.5E-05 52.0 1.2 131 264-427 18-155 (459)
215 4b4t_I 26S protease regulatory 72.2 3.4 0.00012 47.0 5.3 46 265-316 214-259 (437)
216 1uaa_A REP helicase, protein ( 71.9 5.1 0.00017 48.5 7.2 68 248-321 2-71 (673)
217 3hu3_A Transitional endoplasmi 71.5 5.2 0.00018 46.5 6.9 35 265-305 236-270 (489)
218 4a2w_A RIG-I, retinoic acid in 71.0 1.3 4.4E-05 56.1 1.6 28 741-768 707-734 (936)
219 1sxj_A Activator 1 95 kDa subu 70.2 17 0.00057 42.5 10.9 24 268-291 78-101 (516)
220 1sxj_E Activator 1 40 kDa subu 69.6 16 0.00055 39.8 10.1 40 253-292 19-61 (354)
221 4gl2_A Interferon-induced heli 68.9 1.4 4.9E-05 53.4 1.4 64 741-808 477-540 (699)
222 3pvs_A Replication-associated 68.8 5 0.00017 46.2 5.8 24 268-291 51-74 (447)
223 2qby_A CDC6 homolog 1, cell di 68.3 11 0.00039 41.2 8.6 45 250-294 25-72 (386)
224 1r6b_X CLPA protein; AAA+, N-t 66.7 27 0.00092 42.7 12.3 28 266-293 206-233 (758)
225 3te6_A Regulatory protein SIR3 66.1 66 0.0023 34.9 13.9 46 250-295 25-73 (318)
226 3hjh_A Transcription-repair-co 63.5 8.5 0.00029 44.6 6.4 55 269-330 16-71 (483)
227 2v6i_A RNA helicase; membrane, 62.7 1.7 5.9E-05 49.7 0.4 128 267-427 2-136 (431)
228 3b9p_A CG5977-PA, isoform A; A 61.5 4.8 0.00017 43.0 3.7 26 266-291 53-78 (297)
229 2w58_A DNAI, primosome compone 61.3 14 0.00048 36.7 7.0 27 268-294 55-81 (202)
230 1qvr_A CLPB protein; coiled co 61.1 23 0.00078 44.1 10.2 28 266-293 190-217 (854)
231 1pjr_A PCRA; DNA repair, DNA r 59.0 18 0.00063 44.1 8.6 67 248-320 11-79 (724)
232 2qen_A Walker-type ATPase; unk 58.7 15 0.00052 39.6 7.2 39 249-290 16-54 (350)
233 3ec2_A DNA replication protein 57.1 21 0.00072 34.7 7.3 44 250-293 16-64 (180)
234 3kl4_A SRP54, signal recogniti 57.1 28 0.00095 39.7 9.1 36 270-307 100-135 (433)
235 2ce7_A Cell division protein F 54.5 18 0.0006 41.9 7.0 25 267-291 49-73 (476)
236 3dm5_A SRP54, signal recogniti 54.3 27 0.00091 39.9 8.3 33 270-305 103-135 (443)
237 4b4t_M 26S protease regulatory 53.0 7.3 0.00025 44.5 3.4 47 265-317 213-259 (434)
238 2fna_A Conserved hypothetical 52.6 1.6E+02 0.0054 31.3 14.2 37 250-291 18-54 (357)
239 2jlq_A Serine protease subunit 51.7 5.6 0.00019 45.7 2.2 127 267-426 19-152 (451)
240 3rc3_A ATP-dependent RNA helic 50.6 5.1 0.00017 48.6 1.7 122 266-424 154-280 (677)
241 2ykg_A Probable ATP-dependent 49.7 5.4 0.00019 48.3 1.8 111 638-792 398-521 (696)
242 1e0b_A SWI6 protein; chromatin 49.7 12 0.00041 31.0 3.3 26 140-165 11-36 (68)
243 3u4q_A ATP-dependent helicase/ 49.2 25 0.00087 45.7 8.0 60 245-310 7-69 (1232)
244 2px0_A Flagellar biosynthesis 48.0 52 0.0018 35.2 9.1 35 269-305 107-141 (296)
245 2qgz_A Helicase loader, putati 47.6 27 0.00092 37.7 6.8 29 267-295 152-181 (308)
246 4b4t_K 26S protease regulatory 46.6 10 0.00034 43.3 3.2 44 265-314 204-247 (428)
247 4b4t_H 26S protease regulatory 46.0 10 0.00035 43.6 3.1 47 265-317 241-287 (467)
248 3cf2_A TER ATPase, transitiona 45.0 16 0.00056 44.9 4.9 42 266-313 510-551 (806)
249 3u4q_B ATP-dependent helicase/ 44.2 34 0.0012 44.1 8.1 50 272-321 6-55 (1166)
250 1yks_A Genome polyprotein [con 44.0 8.5 0.00029 44.0 2.1 131 265-428 6-143 (440)
251 2c9o_A RUVB-like 1; hexameric 42.1 17 0.00057 41.7 4.2 44 266-313 62-105 (456)
252 1gm5_A RECG; helicase, replica 41.9 67 0.0023 39.5 9.7 75 643-719 422-500 (780)
253 2zpa_A Uncharacterized protein 40.0 43 0.0015 40.2 7.4 54 247-308 174-227 (671)
254 2zr9_A Protein RECA, recombina 39.3 34 0.0012 37.7 6.0 44 266-312 60-103 (349)
255 3co5_A Putative two-component 39.1 22 0.00075 33.4 3.9 50 265-321 25-74 (143)
256 3bh0_A DNAB-like replicative h 39.1 50 0.0017 35.6 7.3 58 257-317 58-115 (315)
257 1z5z_A Helicase of the SNF2/RA 38.7 11 0.00038 40.1 1.8 30 741-773 178-207 (271)
258 3n70_A Transport activator; si 38.0 42 0.0014 31.4 5.7 26 264-289 21-46 (145)
259 2zts_A Putative uncharacterize 36.2 52 0.0018 33.3 6.6 52 266-319 29-80 (251)
260 2wv9_A Flavivirin protease NS2 35.8 11 0.00037 45.7 1.3 147 248-426 215-374 (673)
261 3uk6_A RUVB-like 2; hexameric 35.3 39 0.0013 36.8 5.7 56 247-306 46-105 (368)
262 2xau_A PRE-mRNA-splicing facto 35.3 7.4 0.00025 48.0 -0.3 150 250-425 95-250 (773)
263 2l82_A Designed protein OR32; 35.2 1.1E+02 0.0038 27.2 7.3 49 641-689 5-53 (162)
264 3cf2_A TER ATPase, transitiona 34.8 26 0.00088 43.2 4.4 41 267-313 238-278 (806)
265 3of5_A Dethiobiotin synthetase 33.9 27 0.00091 36.0 3.8 27 270-296 8-34 (228)
266 3qxc_A Dethiobiotin synthetase 33.9 26 0.00088 36.6 3.7 27 270-296 25-51 (242)
267 1ofh_A ATP-dependent HSL prote 33.8 48 0.0016 34.9 6.0 26 266-291 49-74 (310)
268 3bgw_A DNAB-like replicative h 33.6 49 0.0017 37.7 6.3 58 256-316 186-243 (444)
269 4a1f_A DNAB helicase, replicat 33.5 75 0.0026 34.8 7.5 55 259-316 38-92 (338)
270 3hgt_A HDA1 complex subunit 3; 33.5 1E+02 0.0034 33.6 8.4 93 649-757 112-204 (328)
271 2z43_A DNA repair and recombin 32.9 1.4E+02 0.0048 32.0 9.7 44 265-308 105-151 (324)
272 2q6t_A DNAB replication FORK h 32.1 78 0.0027 35.9 7.7 60 256-317 189-248 (444)
273 2r44_A Uncharacterized protein 31.7 20 0.00069 38.7 2.6 30 262-291 41-70 (331)
274 2whx_A Serine protease/ntpase/ 31.6 13 0.00045 44.5 1.0 131 264-427 183-320 (618)
275 1u6t_A SH3 domain-binding glut 31.5 54 0.0018 30.3 5.0 35 651-685 19-53 (121)
276 1z63_A Helicase of the SNF2/RA 31.3 15 0.0005 42.4 1.4 14 727-740 430-443 (500)
277 3fgn_A Dethiobiotin synthetase 31.1 30 0.001 36.3 3.7 28 270-297 30-57 (251)
278 2dhr_A FTSH; AAA+ protein, hex 30.4 1.3E+02 0.0045 34.7 9.3 24 267-290 64-87 (499)
279 3hws_A ATP-dependent CLP prote 30.2 54 0.0019 35.9 5.8 35 266-306 50-84 (363)
280 1tf5_A Preprotein translocase 29.0 24 0.00082 43.4 2.7 123 245-399 80-215 (844)
281 3ipz_A Monothiol glutaredoxin- 28.8 1.1E+02 0.0038 27.1 6.7 54 637-690 16-75 (109)
282 3jux_A Protein translocase sub 28.3 28 0.00097 42.3 3.1 170 245-437 72-282 (822)
283 2dr3_A UPF0273 protein PH0284; 28.0 99 0.0034 31.1 7.0 50 266-318 22-71 (247)
284 1tue_A Replication protein E1; 27.9 53 0.0018 33.5 4.6 24 268-291 59-82 (212)
285 1zu4_A FTSY; GTPase, signal re 27.6 1.7E+02 0.0059 31.5 9.2 33 270-305 108-140 (320)
286 2r8r_A Sensor protein; KDPD, P 27.4 59 0.002 33.5 5.0 44 269-314 8-52 (228)
287 2r6a_A DNAB helicase, replicat 27.4 1.1E+02 0.0036 34.8 7.8 59 256-316 192-250 (454)
288 3zyw_A Glutaredoxin-3; metal b 26.9 1.3E+02 0.0045 26.8 6.8 50 637-686 14-69 (111)
289 3io5_A Recombination and repai 26.8 1.7E+02 0.0057 31.9 8.6 40 269-309 30-69 (333)
290 1lv7_A FTSH; alpha/beta domain 26.8 1E+02 0.0034 31.7 6.9 25 267-291 45-69 (257)
291 1ojl_A Transcriptional regulat 26.5 78 0.0027 33.9 6.1 39 264-305 22-60 (304)
292 3oiy_A Reverse gyrase helicase 26.4 1.4E+02 0.0049 32.8 8.6 74 640-715 66-145 (414)
293 3ui2_A Signal recognition part 25.7 64 0.0022 32.9 5.0 48 138-191 185-232 (244)
294 1z3i_X Similar to RAD54-like; 25.7 30 0.001 41.6 2.7 37 741-780 482-518 (644)
295 3foj_A Uncharacterized protein 25.6 62 0.0021 28.1 4.2 41 633-673 51-91 (100)
296 3i42_A Response regulator rece 25.3 75 0.0026 28.0 4.9 29 639-667 4-32 (127)
297 3iwh_A Rhodanese-like domain p 25.2 47 0.0016 29.5 3.3 42 632-673 50-91 (103)
298 3a10_A Response regulator; pho 24.2 1.3E+02 0.0044 25.8 6.2 27 640-666 3-29 (116)
299 1byi_A Dethiobiotin synthase; 24.0 86 0.0029 31.3 5.6 34 270-306 5-38 (224)
300 2z0m_A 337AA long hypothetical 24.0 19 0.00065 38.5 0.5 34 764-798 302-335 (337)
301 2w0m_A SSO2452; RECA, SSPF, un 23.3 1.2E+02 0.004 30.1 6.5 45 265-312 21-65 (235)
302 1u0j_A DNA replication protein 23.2 45 0.0015 35.3 3.2 23 268-290 105-127 (267)
303 1wp9_A ATP-dependent RNA helic 23.1 33 0.0011 38.4 2.4 30 741-773 432-461 (494)
304 3lte_A Response regulator; str 23.0 1.3E+02 0.0043 26.6 6.0 113 638-774 6-127 (132)
305 2i1q_A DNA repair and recombin 22.9 2.2E+02 0.0075 30.3 8.9 25 266-290 97-121 (322)
306 1sxj_C Activator 1 40 kDa subu 22.7 74 0.0025 34.4 5.1 40 253-292 30-71 (340)
307 4fcw_A Chaperone protein CLPB; 22.5 50 0.0017 34.9 3.5 34 268-304 48-81 (311)
308 2wem_A Glutaredoxin-related pr 22.3 1.7E+02 0.0059 26.5 6.7 52 639-690 20-78 (118)
309 1xp8_A RECA protein, recombina 22.3 68 0.0023 35.5 4.7 46 265-313 72-117 (366)
310 3gx8_A Monothiol glutaredoxin- 21.8 1.6E+02 0.0054 26.8 6.4 53 638-690 15-76 (121)
311 3eme_A Rhodanese-like domain p 21.2 72 0.0025 27.8 3.8 40 634-673 52-91 (103)
312 2wci_A Glutaredoxin-4; redox-a 20.7 1.7E+02 0.0058 27.3 6.4 52 639-690 35-92 (135)
313 3hr8_A Protein RECA; alpha and 20.6 1.5E+02 0.0051 32.6 6.9 41 267-310 61-101 (356)
314 3o8b_A HCV NS3 protease/helica 20.6 28 0.00097 41.9 1.1 127 265-426 230-361 (666)
315 3cg4_A Response regulator rece 20.6 3.2E+02 0.011 24.2 8.4 29 638-666 7-35 (142)
316 1um8_A ATP-dependent CLP prote 20.3 86 0.0029 34.4 5.0 25 267-291 72-96 (376)
317 2j48_A Two-component sensor ki 20.3 1.1E+02 0.0037 26.1 4.8 29 639-667 2-30 (119)
318 2fsf_A Preprotein translocase 20.0 42 0.0014 41.3 2.5 124 245-400 71-207 (853)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-94 Score=907.32 Aligned_cols=585 Identities=44% Similarity=0.761 Sum_probs=481.8
Q ss_pred CCCceeeeEEEeeccc----CCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhcccCC-CCccccccccccc
Q psy10448 136 KPEWLIANRVINSKTL----RDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSKGR-GKTKTKELQEDED 210 (1001)
Q Consensus 136 ~~~~~~~~ri~~~~~~----~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~~~~~-~k~~~~~~~~~~~ 210 (1001)
.++|+.|+|||+++.. ..+..+|||||++|||++||||.........++.++.|..+..... +... .
T Consensus 142 ~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~--------~ 213 (800)
T 3mwy_W 142 FEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYS--------S 213 (800)
T ss_dssp HTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTC--------C
T ss_pred cccccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHhhhcccCCcch--------h
Confidence 4889999999998752 3456899999999999999999876433345677888876543211 1000 0
Q ss_pred CCCCCCCCCCCCCCCCCChhhhhhhhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 211 GASGSKPRRYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
......|. ...+..+|+++ .+.+|+|||++||+||...+..+.||||||+||||||+|+|+++..
T Consensus 214 ------~~~~~~~~-------~~~~~~~p~~~--~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~ 278 (800)
T 3mwy_W 214 ------NYTSQRPR-------FEKLSVQPPFI--KGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISW 278 (800)
T ss_dssp ------CCCSCCCC-------CCCCSSCCTTC--CSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHH
T ss_pred ------cccccCCc-------ccccccCCCcc--CCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHH
Confidence 00000111 23456778877 4789999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEE
Q psy10448 291 LFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLL 370 (1001)
Q Consensus 291 l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvI 370 (1001)
++......+|+|||||.+++.||.+||.+|+|++.+++|+|....+..++..++...... ......+++|+|
T Consensus 279 l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~--------~~~~~~~~dvvi 350 (800)
T 3mwy_W 279 LIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRA--------KGKKTMKFNVLL 350 (800)
T ss_dssp HHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-------------CCCCCSEEE
T ss_pred HHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccc--------cccccccCCEEE
Confidence 887777788999999999999999999999999999999999999888776655321110 012456789999
Q ss_pred ecHHHHHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhH
Q psy10448 371 TSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTS 450 (1001)
Q Consensus 371 tTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~ 450 (1001)
|||+++.++...+..+.|++|||||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....
T Consensus 351 tTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~ 430 (800)
T 3mwy_W 351 TTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQE 430 (800)
T ss_dssp ECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-----
T ss_pred ecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHccccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHH
Q psy10448 451 FQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLL 530 (1001)
Q Consensus 451 F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll 530 (1001)
|............+..|+.+++|+|+||++.++...||++.+.++.|+||+.|+.+|+.++.++...+.....+...+++
T Consensus 431 ~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l 510 (800)
T 3mwy_W 431 IDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLL 510 (800)
T ss_dssp ----CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHH
T ss_pred hcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHH
Confidence 76555555556778999999999999999999999999999999999999999999999999888777766666677899
Q ss_pred HHHHHHHHHhcCCCCCchhhhcCCc------CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhccc
Q psy10448 531 NIMMDLKKCCNHPYLFPAAAEEAPV------QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINS 604 (1001)
Q Consensus 531 ~~l~~LRk~c~HP~L~~~~~~~~~~------~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~ 604 (1001)
++++.||++|+||+++......... .........++..|+|+.+|.++|..+.+.|++++
T Consensus 511 ~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvL-------------- 576 (800)
T 3mwy_W 511 NIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVL-------------- 576 (800)
T ss_dssp HHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEE--------------
T ss_pred HHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEE--------------
Confidence 9999999999999998765433211 12233456778899999999999999988887776
Q ss_pred ccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHh
Q psy10448 605 KTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRF 684 (1001)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~F 684 (1001)
|||+|+.++++|+++|...|+++.+++|+++..+|++++++|
T Consensus 577 --------------------------------------IFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 577 --------------------------------------IFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp --------------------------------------EEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred --------------------------------------EEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhh
Q psy10448 685 NAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQ 764 (1001)
Q Consensus 685 n~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~Q 764 (1001)
++++...++||+||++||+||||+.|++||+||++|||+ .+.|
T Consensus 619 ~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~-------------------------------------~~~Q 661 (800)
T 3mwy_W 619 NSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ-------------------------------------ADLQ 661 (800)
T ss_dssp SSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSH-------------------------------------HHHH
T ss_pred hCCCCCceEEEEecccccCCCCccccceEEEecCCCChh-------------------------------------hHHH
Confidence 998888889999999999999999999999999999998 9999
Q ss_pred HhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCCC-----cCCCCCHHHHHHHHhcChhhhhccc
Q psy10448 765 AFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGG-----KQANFTKQELDDILRFGTEELFKEE 839 (1001)
Q Consensus 765 A~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~~-----~~~~~~~~el~~ll~~g~~~lf~~~ 839 (1001)
|+||+||+||+++|.||+|++++|+||+|++++.+|+.|.+++++.+... ....++.+||.+||++|+.+||+..
T Consensus 662 a~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~~ 741 (800)
T 3mwy_W 662 AMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTAT 741 (800)
T ss_dssp HHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSCCSH
T ss_pred HHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHhhhhcc
Confidence 99999999999999999999999999999999999999999999865432 2346899999999999999999876
Q ss_pred c
Q psy10448 840 E 840 (1001)
Q Consensus 840 ~ 840 (1001)
+
T Consensus 742 ~ 742 (800)
T 3mwy_W 742 D 742 (800)
T ss_dssp H
T ss_pred C
Confidence 4
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-75 Score=718.21 Aligned_cols=484 Identities=29% Similarity=0.488 Sum_probs=402.0
Q ss_pred CCcccHHHHHHHHHHHHhh-----cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC----CCcEEEEeCcchHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSW-----GQNIDTILADEMGLGKTIQTITFLYSLFKEGHC----KGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~-----~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~----~~p~LIV~P~sll~qW~~E 316 (1001)
...|+|||.+||+||...+ ..+.||||||+||||||+|+|+++..++..... .+++|||||.+++.||.+|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 5689999999999998775 466789999999999999999999998876643 3459999999999999999
Q ss_pred HHHHCCC-CeEEEEeCC-chhhh-hhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEE
Q psy10448 317 FETWAPD-FYVVTYVGD-KDCRI-VLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVV 393 (1001)
Q Consensus 317 ~~k~~p~-~~vv~y~g~-~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIi 393 (1001)
|.+|++. ..++.++|. ...+. .+... . ... .....++|+||||+++..+...+....|++||+
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~---~~~-------~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~ 198 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNF----I---SQQ-------GMRIPTPILIISYETFRLHAEVLHKGKVGLVIC 198 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHH----H---CCC-------SSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEE
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHH----H---Hhc-------CCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEE
Confidence 9999875 555555543 22211 11110 0 000 112357899999999999988898999999999
Q ss_pred cCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcccc--------------
Q psy10448 394 DEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADIS-------------- 459 (1001)
Q Consensus 394 DEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~-------------- 459 (1001)
||||++||..++.++++..+.+.+||+|||||++|++.|||++++|+.|+.+++...|.+.|..+.
T Consensus 199 DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 278 (644)
T 1z3i_X 199 DEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278 (644)
T ss_dssp TTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHH
T ss_pred ECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred -HHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHH
Q psy10448 460 -KEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKK 538 (1001)
Q Consensus 460 -~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk 538 (1001)
....+..|+.++.++++||++.++...||++.+.++.|+||+.|+++|+.++...........+......+..++.||+
T Consensus 279 ~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 279 AGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 1345778999999999999999999999999999999999999999999998776544333333445678889999999
Q ss_pred HhcCCCCCchhhhcCCc---------CCChhhHHHHHHhhchHHHHHHHHHHHHHc-CCccccchhhhHhhhhccccccc
Q psy10448 539 CCNHPYLFPAAAEEAPV---------QGGQYEIQALTRAAGKLVLLSKMLKKLKED-GHRYGIKPEWLIANRVINSKTLR 608 (1001)
Q Consensus 539 ~c~HP~L~~~~~~~~~~---------~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~-g~rvli~~e~~~~~~~~~~~~~~ 608 (1001)
+|+||+++......... +............|+|+.++..++..+... ++
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~--------------------- 417 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSD--------------------- 417 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCC---------------------
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCC---------------------
Confidence 99999987542211000 000000001124689999999999887643 44
Q ss_pred CCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCC
Q psy10448 609 DGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPG 688 (1001)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~ 688 (1001)
|+||||+++.++++|+.+|...|+.+.+++|+++..+|++++++|++++
T Consensus 418 -------------------------------k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 418 -------------------------------KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp -------------------------------EEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTT
T ss_pred -------------------------------EEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 4559999999999999999999999999999999999999999999988
Q ss_pred CCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhh
Q psy10448 689 ASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSR 768 (1001)
Q Consensus 689 ~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~R 768 (1001)
...++||+||++||+||||+.|++||+||++|||. .+.||+||
T Consensus 467 ~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~-------------------------------------~~~Qa~gR 509 (644)
T 1z3i_X 467 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA-------------------------------------NDEQAMAR 509 (644)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHH-------------------------------------HHHHHHTT
T ss_pred CCcEEEEEecccccCCcccccCCEEEEECCCCCcc-------------------------------------HHHHHHHh
Confidence 77779999999999999999999999999998888 99999999
Q ss_pred hhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHhcChh
Q psy10448 769 AHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTE 833 (1001)
Q Consensus 769 ahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~~g~~ 833 (1001)
+||+||+++|.||+|++.+|+||+|++++..|..+.+.|++++.. ....|+.+||.+||.++..
T Consensus 510 ~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~-~~~~~~~~~l~~Lf~~~~~ 573 (644)
T 1z3i_X 510 VWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQD-VERHFSLGELRELFSLNEK 573 (644)
T ss_dssp SSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSS-CCCSSCHHHHHHHTCCCSS
T ss_pred hhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcch-hhcCCCHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999986533 3467999999999876543
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.3e-68 Score=638.01 Aligned_cols=457 Identities=28% Similarity=0.542 Sum_probs=392.2
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDF 324 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 324 (1001)
...+|+|||.+|++||...+..+.||||||+||+|||+++++++..+...+. .+++|||||.+++.||.+||.+|+|..
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLSVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECSTTHHHHHHHHHHHCTTS
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccHHHHHHHHHHHHHHCCCc
Confidence 4578999999999999888888899999999999999999999998876543 457999999999999999999999999
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
.+.+++|.... .....++|+||||+++.++.. +....|++||+||||+++|..+
T Consensus 113 ~v~~~~g~~~~-------------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~ 166 (500)
T 1z63_A 113 RFAVFHEDRSK-------------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQT 166 (500)
T ss_dssp CEEECSSSTTS-------------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTS
T ss_pred eEEEEecCchh-------------------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhH
Confidence 99988876521 112357899999999988765 6778999999999999999999
Q ss_pred HHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcccc---HHHHHHHHHhhcCCeeeeeeHh
Q psy10448 405 KFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADIS---KEEQVKRLHDLLGPHMLRRLKA 481 (1001)
Q Consensus 405 k~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~---~~~~~~~L~~lL~~~~lRR~K~ 481 (1001)
+.++++..+.+.++|+|||||++|++.|||++++|+.|+.+++...|...|.... .......|+.+++++++||++.
T Consensus 167 ~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~ 246 (500)
T 1z63_A 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKY 246 (500)
T ss_dssp HHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTT
T ss_pred HHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccc
Confidence 9999999999999999999999999999999999999999999999998886432 2445678999999999999997
Q ss_pred H--HhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCC-ccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCC
Q psy10448 482 D--VLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGG-QQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGG 558 (1001)
Q Consensus 482 d--v~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~-~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~ 558 (1001)
+ +..+||++.+..+.|+|++.|+.+|+.+.......+....+. ....++..++.+|++|+||.++.....
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~------- 319 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ------- 319 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC-------
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccc-------
Confidence 6 667899999999999999999999999988766555432221 233577889999999999987653211
Q ss_pred hhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCC
Q psy10448 559 QYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGL 638 (1001)
Q Consensus 559 ~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1001)
....++|+..+.+++..+...+++++
T Consensus 320 ------~~~~s~K~~~l~~~l~~~~~~~~k~l------------------------------------------------ 345 (500)
T 1z63_A 320 ------SVRRSGKMIRTMEIIEEALDEGDKIA------------------------------------------------ 345 (500)
T ss_dssp ------CSTTCHHHHHHHHHHHHHHTTTCCEE------------------------------------------------
T ss_pred ------hhhcchhHHHHHHHHHHHHccCCcEE------------------------------------------------
Confidence 12357899999999988876666555
Q ss_pred ceeEEEeccHHHHHHHHHHHhhC-CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGE-GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
|||+++.+++.|...|... |+.+.+++|+++..+|++++++|++++... ++|+||+++|+|+||+.|++||+||
T Consensus 346 ----vF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~-vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 346 ----IFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK-FIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp ----EECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCC-CCEEECCCC-CCCCCTTCSEEEESS
T ss_pred ----EEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCC-EEEEecccccCCCchhhCCEEEEeC
Confidence 9999999999999999986 999999999999999999999999874433 6899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHH
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVA 797 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~ 797 (1001)
++|||. .+.||+||+||+||+++|.||+|++.+|+||+|++++
T Consensus 421 ~~~~~~-------------------------------------~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 421 RWWNPA-------------------------------------VEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp CCSCC----------------------------------------CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred CCCCcc-------------------------------------hHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHH
Confidence 999998 8888888899999999999999999999999999999
Q ss_pred HHHHHHHhHhccCCCCCcCCCCCHHHHHHHHhcCh
Q psy10448 798 KRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGT 832 (1001)
Q Consensus 798 ~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~~g~ 832 (1001)
..|..+.+.+++++.. ....++.+||.+||.+..
T Consensus 464 ~~K~~l~~~~~~~~~~-~~~~~~~~~l~~l~~~~~ 497 (500)
T 1z63_A 464 AFKRSLFKDIISSGDS-WITELSTEELRKVIELSV 497 (500)
T ss_dssp TTCSSSSSSGGGSTTG-GGGSSCHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhcCcc-hhccCCHHHHHHHhccCC
Confidence 9999999999986532 346799999999987654
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2e-48 Score=495.29 Aligned_cols=427 Identities=19% Similarity=0.227 Sum_probs=323.5
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDF 324 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 324 (1001)
...+|+|||.+++.|+... .+.++||||+||+|||+++++++..+...+. .+++|||||.+++.||..||.+|+ +.
T Consensus 150 ~~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~sLl~Qw~~E~~~~f-~l 225 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPETLQHQWLVEMLRRF-NL 225 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCTTTHHHHHHHHHHHS-CC
T ss_pred CCCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHHHHHh-CC
Confidence 4678999999999998753 3568999999999999999999998887664 346999999999999999999988 67
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH---hhhcCCceeEEEEcCccccCC
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV---ALLGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~---~~L~~~~w~~VIiDEAH~lKN 401 (1001)
.+.++.|+......... ......++|+|+||+++.++. ..+....|++|||||||+++|
T Consensus 226 ~v~v~~~~~~~~~~~~~------------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDA------------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVW 287 (968)
T ss_dssp CCEECCHHHHHHHHHTT------------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCC
T ss_pred CEEEEccchhhhhhhhc------------------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcC
Confidence 77777765433211110 023346789999999998763 446677899999999999998
Q ss_pred cccH---HHHHHhcc--cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHH---------------
Q psy10448 402 NQSK---FFKFLSGY--SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKE--------------- 461 (1001)
Q Consensus 402 ~~Sk---~~~al~~l--~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~--------------- 461 (1001)
..+. .++++..+ ++.++|+|||||++|++.|+|++++|+.|+.|++...|...+......
T Consensus 288 ~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~ 367 (968)
T 3dmq_A 288 SEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSN 367 (968)
T ss_dssp BTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCG
T ss_pred CCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCH
Confidence 7654 47788877 678899999999999999999999999999999999998775432110
Q ss_pred -------------------------------HHHHHHHhhc-----CCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHH
Q psy10448 462 -------------------------------EQVKRLHDLL-----GPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKK 505 (1001)
Q Consensus 462 -------------------------------~~~~~L~~lL-----~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~ 505 (1001)
.....+..++ ..+++|+++..+ ..+|++....+.+++++.+..
T Consensus 368 ~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~ 446 (968)
T 3dmq_A 368 DELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQT 446 (968)
T ss_dssp GGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHH
T ss_pred HHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHH
Confidence 0011122222 456777777666 489999999999999999999
Q ss_pred HHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHc
Q psy10448 506 YYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKED 585 (1001)
Q Consensus 506 ~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~ 585 (1001)
.|...... .... ..... ...+.+|..+....... .......+.|+..|.+++.. ..
T Consensus 447 ~~~~~~~~-----~~~~-~~~~~--------~~~~l~pe~~~~~l~~~--------~~~~~~~~~K~~~L~~ll~~--~~ 502 (968)
T 3dmq_A 447 AIKVSGIM-----GARK-SAEDR--------ARDMLYPERIYQEFEGD--------NATWWNFDPRVEWLMGYLTS--HR 502 (968)
T ss_dssp HHHHHHHT-----TCCS-SGGGG--------THHHHCSGGGTTTTTSS--------SCCTTTTSHHHHHHHHHHHH--TS
T ss_pred HHHHHhhh-----hhhh-hhHHH--------HhhhcChHHHHHHhhhh--------hhcccCccHHHHHHHHHHHh--CC
Confidence 88753221 1100 00000 01122332211110000 00112356788888888765 33
Q ss_pred CCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhh-CCCe
Q psy10448 586 GHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDG-EGYK 664 (1001)
Q Consensus 586 g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~-~gi~ 664 (1001)
+.++ ||||++..+++.|...|.. .|++
T Consensus 503 ~~k~----------------------------------------------------iVF~~~~~~~~~l~~~L~~~~g~~ 530 (968)
T 3dmq_A 503 SQKV----------------------------------------------------LVICAKAATALQLEQVLREREGIR 530 (968)
T ss_dssp SSCC----------------------------------------------------CEECSSTHHHHHHHHHHHTTTCCC
T ss_pred CCCE----------------------------------------------------EEEeCcHHHHHHHHHHHHHHcCCc
Confidence 4444 4999999999999999995 5999
Q ss_pred EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccc
Q psy10448 665 YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINL 744 (1001)
Q Consensus 665 ~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL 744 (1001)
+..++|+++..+|+.++++|+++.+. +.+|+||+++++|||++.|++||+||++|||.
T Consensus 531 ~~~lhG~~~~~~R~~~l~~F~~g~~~-~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~--------------------- 588 (968)
T 3dmq_A 531 AAVFHEGMSIIERDRAAAWFAEEDTG-AQVLLCSEIGSEGRNFQFASHMVMFDLPFNPD--------------------- 588 (968)
T ss_dssp EEEECTTSCTTHHHHHHHHHHSTTSS-CEEEECSCCTTCSSCCTTCCEEECSSCCSSHH---------------------
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCc-ccEEEecchhhcCCCcccCcEEEEecCCCCHH---------------------
Confidence 99999999999999999999997522 36889999999999999999999999999999
Q ss_pred cccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhc
Q psy10448 745 ATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 808 (1001)
Q Consensus 745 ~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv 808 (1001)
...|++||+||+||++.|.||++++.+|+|++|++.+..|..+....+
T Consensus 589 ----------------~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~ 636 (968)
T 3dmq_A 589 ----------------LLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTC 636 (968)
T ss_dssp ----------------HHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCC
T ss_pred ----------------HHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCC
Confidence 666666677777788889999999999999999999999987655443
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-43 Score=413.34 Aligned_cols=426 Identities=17% Similarity=0.184 Sum_probs=269.8
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHC--
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-- 321 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~-- 321 (1001)
.+++|+|||.+++.|+. .+ ++||+++||+|||+++++++..++. ...+++|||||. +++.||.+++.+|+
T Consensus 6 ~~~~l~~~Q~~~i~~~~----~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~ 78 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCK----ET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (494)
T ss_dssp HHHCCCHHHHHHHHHGG----GS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CCCCccHHHHHHHHHHh----hC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCc
Confidence 45789999999999886 33 8999999999999999999888766 234569999996 89999999999998
Q ss_pred CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCcccc
Q psy10448 322 PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 322 p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~l 399 (1001)
+...+..++|......... ....++|+|+||+.+..... .+....|++||+||||++
T Consensus 79 ~~~~v~~~~g~~~~~~~~~---------------------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERSK---------------------AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp CGGGEEEECSCSCHHHHHH---------------------HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGC
T ss_pred chhheEEeeCCcchhhhhh---------------------hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCccc
Confidence 5568888888765432211 11246899999999988654 455668999999999999
Q ss_pred CCcccH--HHHHHh-cccccceEeeecCCCCCCHHHHHHhhhccCCCCCC---ChhHHHHHHcc--------ccHHHHHH
Q psy10448 400 KSNQSK--FFKFLS-GYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFN---DLTSFQAEFAD--------ISKEEQVK 465 (1001)
Q Consensus 400 KN~~Sk--~~~al~-~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~---~~~~F~~~f~~--------~~~~~~~~ 465 (1001)
++..+. ....+. .....++|+|||||. |+..+++.++.++...... ....+...|.. ........
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYK 216 (494)
T ss_dssp STTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHH
T ss_pred CCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHH
Confidence 875332 222222 235678999999999 7778888888777654221 11111111100 01112334
Q ss_pred HHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCC---------------------
Q psy10448 466 RLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGG--------------------- 524 (1001)
Q Consensus 466 ~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~--------------------- 524 (1001)
.+...+.+.+.++.+......+..... ..++..........+. ..+......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (494)
T 1wp9_A 217 EVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIIN---EEMAKGNHDLRGLLLYHAMALKLHHAIELL 289 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHH---HHHTTTCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHH---HHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 444555555555554433322221110 0111111110000000 001100000
Q ss_pred ---ccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChhhHHHH----------HHhhchHHHHHHHHHHHHHcCCcccc
Q psy10448 525 ---QQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQAL----------TRAAGKLVLLSKMLKKLKEDGHRYGI 591 (1001)
Q Consensus 525 ---~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~~~~~l----------~~~S~Kl~~L~klL~~l~~~g~rvli 591 (1001)
....+...+..+...+.|+........ ... ...... ...++|+..|.+++......
T Consensus 290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~------ 358 (494)
T 1wp9_A 290 ETQGLSALRAYIKKLYEEAKAGSTKASKEI---FSD--KRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR------ 358 (494)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTCCHHHHHH---HTS--HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH------
T ss_pred HhhcHHHHHHHHHHHHHhhccccchhhhhh---hhh--HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc------
Confidence 011122333334444443211000000 000 000000 03455777777777665421
Q ss_pred chhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEc-
Q psy10448 592 KPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDG- 670 (1001)
Q Consensus 592 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG- 670 (1001)
....|+|||+++..+++.|.++|...|+.+..++|
T Consensus 359 --------------------------------------------~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~ 394 (494)
T 1wp9_A 359 --------------------------------------------KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ 394 (494)
T ss_dssp --------------------------------------------CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred --------------------------------------------CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecc
Confidence 12245669999999999999999999999999999
Q ss_pred -------cCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCcccccc
Q psy10448 671 -------NITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYIN 743 (1001)
Q Consensus 671 -------~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LN 743 (1001)
+++..+|++++++|+++... +|++|+++|+|||++.|++||+||++|||.
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~-------------------- 451 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAI-------------------- 451 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHH--------------------
T ss_pred ccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHH--------------------
Confidence 99999999999999987643 799999999999999999999999999999
Q ss_pred ccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q psy10448 744 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLT 804 (1001)
Q Consensus 744 L~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~ 804 (1001)
...|++||+||.|| +.+|+|++++|+||+++..+..|..+.
T Consensus 452 -----------------~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 452 -----------------RSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp -----------------HHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred -----------------HHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 55555556666666 789999999999999999999887664
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-41 Score=372.15 Aligned_cols=255 Identities=24% Similarity=0.429 Sum_probs=195.1
Q ss_pred eeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCC-ccchHHHHHHHHHHHhcCCCCCchhhhcC
Q psy10448 475 MLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGG-QQVSLLNIMMDLKKCCNHPYLFPAAAEEA 553 (1001)
Q Consensus 475 ~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~-~~~~ll~~l~~LRk~c~HP~L~~~~~~~~ 553 (1001)
-+||+|++|..+||++.+.+++|+||+.|+++|+.++......+....+. ....+++.++.||++|+||+++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 47999999999999999999999999999999999998877766533221 23457889999999999999875221
Q ss_pred CcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 554 PVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 554 ~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
.+...++|+..|.+++..+.+.+++++
T Consensus 90 ----------~~~~~s~K~~~L~~ll~~~~~~~~kvl------------------------------------------- 116 (271)
T 1z5z_A 90 ----------QSVRRSGKMIRTMEIIEEALDEGDKIA------------------------------------------- 116 (271)
T ss_dssp ----------CCSTTCHHHHHHHHHHHHHHHTTCCEE-------------------------------------------
T ss_pred ----------cccccCHHHHHHHHHHHHHHhCCCeEE-------------------------------------------
Confidence 113468999999999999887777665
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhC-CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGE-GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
|||+++.+++.|..+|... |+.+.+++|+++..+|++++++|++++... |||+||++||+||||+.|++
T Consensus 117 ---------IFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~-v~L~st~~~g~Glnl~~a~~ 186 (271)
T 1z5z_A 117 ---------IFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK-FIVLSVKAGGFGINLTSANR 186 (271)
T ss_dssp ---------EEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCC-EEEEECCTTCCCCCCTTCSE
T ss_pred ---------EEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCC-EEEEehhhhcCCcCcccCCE
Confidence 9999999999999999985 999999999999999999999999874443 79999999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHH
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEER 792 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~ 792 (1001)
||+||+||||. .+.||+||+||+||+++|.||+|++.+|+||+
T Consensus 187 VI~~d~~wnp~-------------------------------------~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~ 229 (271)
T 1z5z_A 187 VIHFDRWWNPA-------------------------------------VEDQATDRVYRIGQTRNVIVHKLISVGTLEEK 229 (271)
T ss_dssp EEECSCCSCTT-------------------------------------TC--------------CCEEEEEEETTSHHHH
T ss_pred EEEECCCCChh-------------------------------------HHHHHHHhccccCCCCceEEEEEeeCCCHHHH
Confidence 99999999998 88889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhccCCCCCcCCCCCHHHHHHHHhcChh
Q psy10448 793 VTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTE 833 (1001)
Q Consensus 793 I~~~~~~K~~l~~~vv~~~~~~~~~~~~~~el~~ll~~g~~ 833 (1001)
|++++..|..+.+.+++++.. ....++.+||.+||.++.+
T Consensus 230 i~~~~~~K~~l~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 230 IDQLLAFKRSLFKDIISSGDS-WITELSTEELRKVIELSVG 269 (271)
T ss_dssp HHHHHHHCHHHHTTGGGGTTH-HHHTSCHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHHHHHccCch-hhhcCCHHHHHHHhccCCC
Confidence 999999999999999986532 3357999999999987654
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.9e-39 Score=380.99 Aligned_cols=371 Identities=15% Similarity=0.199 Sum_probs=259.8
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDF 324 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~ 324 (1001)
+.+|+|||.+++.++. .+.++||+++||+|||++++.++..+ .+++|||||. +|+.||.++|.+| +.
T Consensus 91 ~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 5689999999998765 45679999999999999999988765 3569999997 8999999999995 45
Q ss_pred e-EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcc
Q psy10448 325 Y-VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQ 403 (1001)
Q Consensus 325 ~-vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~ 403 (1001)
. +.+++|... ...+|+|+||+.+......+. ..|++|||||||++.+..
T Consensus 159 ~~v~~~~g~~~-----------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~ 208 (472)
T 2fwr_A 159 EYVGEFSGRIK-----------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES 208 (472)
T ss_dssp GGEEEBSSSCB-----------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTT
T ss_pred cceEEECCCcC-----------------------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChH
Confidence 5 777666432 134799999999988776554 359999999999998765
Q ss_pred cHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeeeHhHH
Q psy10448 404 SKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADV 483 (1001)
Q Consensus 404 Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K~dv 483 (1001)
.. ..+..+...++++|||||.+++-.+ ..|..++.+.+.++...++
T Consensus 209 ~~--~~~~~~~~~~~l~lSATp~~~~~~~--------------------------------~~l~~~~~~~~~~~~~~~l 254 (472)
T 2fwr_A 209 YV--QIAQMSIAPFRLGLTATFEREDGRH--------------------------------EILKEVVGGKVFELFPDSL 254 (472)
T ss_dssp TH--HHHHTCCCSEEEEEESCCCCTTSGG--------------------------------GSHHHHTCCEEEECCHHHH
T ss_pred HH--HHHHhcCCCeEEEEecCccCCCCHH--------------------------------HHHHHHhCCeEeecCHHHH
Confidence 43 3556667889999999998654111 2345667888888888777
Q ss_pred hhc-CCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCC--ccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCC--
Q psy10448 484 LKN-MPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGG--QQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGG-- 558 (1001)
Q Consensus 484 ~~~-LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~-- 558 (1001)
... +++.....+.+++++.++..|..+.......+...... ....+ ..++.............
T Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 322 (472)
T 2fwr_A 255 AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF------------NKIVMASGYDERAYEALRA 322 (472)
T ss_dssp TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSS------------TTTTTTTCCSSSSSTTTHH
T ss_pred hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhH------------HHHHHHhccCHHHHHHHHH
Confidence 544 77777888999999999999987766554433321100 00000 00000000000000000
Q ss_pred -hhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 559 -QYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 559 -~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
..........+.|+..|.+++.. ..++++
T Consensus 323 ~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~------------------------------------------------ 352 (472)
T 2fwr_A 323 WEEARRIAFNSKNKIRKLREILER--HRKDKI------------------------------------------------ 352 (472)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHH--TSSSCB------------------------------------------------
T ss_pred HHHHHHHhhcChHHHHHHHHHHHh--CCCCcE------------------------------------------------
Confidence 00011223345677777777765 334444
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
||||++..+++.|...|. +..++|+++..+|++++++|+++... +|++|+++++|+|++.+++||+||
T Consensus 353 ----lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~ 420 (472)
T 2fwr_A 353 ----IIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AIVSSQVLDEGIDVPDANVGVIMS 420 (472)
T ss_dssp ----CCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BCBCSSCCCSSSCSCCBSEEEEEC
T ss_pred ----EEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC---EEEEcCchhcCcccccCcEEEEEC
Confidence 499999999999999884 44689999999999999999986554 789999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCC-CeEEEEEEEeCCCHHHHHHHH
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQ-NKVMIYRFVTRNSVEERVTQV 796 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~-k~V~Vyrlvt~~TiEE~I~~~ 796 (1001)
++|||. ...|++||++|.||. +.|.||.|++++|+|+++.++
T Consensus 421 ~~~s~~-------------------------------------~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~ 463 (472)
T 2fwr_A 421 GSGSAR-------------------------------------EYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARR 463 (472)
T ss_dssp CSSCCH-------------------------------------HHHHHHHHSBCCCTTTCCEEEEEEEECSCC-------
T ss_pred CCCCHH-------------------------------------HHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHH
Confidence 999999 555555556666666 689999999999999999988
Q ss_pred HHHHHHH
Q psy10448 797 AKRKMML 803 (1001)
Q Consensus 797 ~~~K~~l 803 (1001)
.+.|..+
T Consensus 464 r~~~~~~ 470 (472)
T 2fwr_A 464 RKNAAKG 470 (472)
T ss_dssp -------
T ss_pred HHHhhcc
Confidence 8877654
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.9e-36 Score=357.96 Aligned_cols=464 Identities=13% Similarity=0.147 Sum_probs=212.8
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--CCcEEEEeCc-chHHHHHHHHHHHCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~p 322 (1001)
.++|+|||.+++.++. .+.++|++++||+|||++++..+...+..... .+.+|||||. +|+.||.+++.++++
T Consensus 5 ~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 5 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ---CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3689999999999886 57789999999999999999888877765432 4569999996 899999999999986
Q ss_pred --CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--h-cCCceeEEEEcCcc
Q psy10448 323 --DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--L-GSIEWAVLVVDEAH 397 (1001)
Q Consensus 323 --~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L-~~~~w~~VIiDEAH 397 (1001)
++.+..++|......... .....++|+|+|++.+...... + ....|++|||||||
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~--------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah 140 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVE--------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH 140 (556)
T ss_dssp GGTCCEEECCCC-----CHH--------------------HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGG
T ss_pred ccCceEEEEeCCCCcchhHH--------------------HhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCc
Confidence 678888887653322111 1112468999999999876543 3 34468999999999
Q ss_pred ccCCcccHHHHHHhc-c--------cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHH
Q psy10448 398 RLKSNQSKFFKFLSG-Y--------SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLH 468 (1001)
Q Consensus 398 ~lKN~~Sk~~~al~~-l--------~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~ 468 (1001)
++.+... ....+.. + ...++++|||||.+++..++...++ .+..|.
T Consensus 141 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~------------------------~i~~l~ 195 (556)
T 4a2p_A 141 NTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIE------------------------HICSLC 195 (556)
T ss_dssp GCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHH------------------------HHHHHH
T ss_pred ccCCcch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHH------------------------HHHHHH
Confidence 9987654 2222111 1 2356899999998876433322111 111222
Q ss_pred hhcCCeeeeee---HhHHhhcCCCceEEEEEEc--CCHHHHHHHHHHHHHhhhhhC---C--------CCCCccchHHHH
Q psy10448 469 DLLGPHMLRRL---KADVLKNMPSKSEFIVRVE--LSPMQKKYYKYILTRNFEALN---P--------KGGGQQVSLLNI 532 (1001)
Q Consensus 469 ~lL~~~~lRR~---K~dv~~~LP~k~e~~v~v~--Ls~~Q~~~Y~~il~~~~~~l~---~--------~~~~~~~~ll~~ 532 (1001)
..+....+... ..++...++......+.+. ..+.-......++......+. . ...-........
T Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 275 (556)
T 4a2p_A 196 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHW 275 (556)
T ss_dssp HHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHH
T ss_pred HhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHH
Confidence 22222111111 1122222333333333333 222222222222221111100 0 000001111222
Q ss_pred HHHHHHHhcCCCCCchhhhcCCcCC--------ChhhHHHHHHhh----chHHHHHHHHHHHHHcCCccccchhhhHhhh
Q psy10448 533 MMDLKKCCNHPYLFPAAAEEAPVQG--------GQYEIQALTRAA----GKLVLLSKMLKKLKEDGHRYGIKPEWLIANR 600 (1001)
Q Consensus 533 l~~LRk~c~HP~L~~~~~~~~~~~~--------~~~~~~~l~~~S----~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~ 600 (1001)
+..+++.+....+............ ..+......... .....+..++..+...+.... ...+....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~ 353 (556)
T 4a2p_A 276 IVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTEL--EQHLTAKF 353 (556)
T ss_dssp HHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHH--HHHHHHHH
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHH
Confidence 3333332221111100000000000 000000000000 001111111111111110000 00000000
Q ss_pred hcccccccCCccchhhccc-CCCcCccccccccccC--CCCceeEEEeccHHHHHHHHHHHhhC------------CCeE
Q psy10448 601 VINSKTLRDGSTIYLVKWR-DLPYDKATWEDENEDI--PGLKESIEFYNMTKMLDILEDYLDGE------------GYKY 665 (1001)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~KvIIFsq~~~~ldiL~~~L~~~------------gi~~ 665 (1001)
......+. . ...... ..++.........+.. ....|+||||+++.+++.|.++|... |..+
T Consensus 354 ~~~~~~l~---~-~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~ 429 (556)
T 4a2p_A 354 QEKEPELI---A-LSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGR 429 (556)
T ss_dssp HTTHHHHH---H-HHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------
T ss_pred hhHHHHhh---h-hccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCC
Confidence 00000000 0 000000 0000000000000000 34568889999999999999999876 5566
Q ss_pred EEEEccCCHHHHHHHHHHhcC-CCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccc
Q psy10448 666 ERIDGNITGSMRQESIDRFNA-PGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINL 744 (1001)
Q Consensus 666 ~ridG~~s~~eRq~~Id~Fn~-~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL 744 (1001)
..++|+++..+|++++++|++ +... +|+||+++|+|||++.|++||+||+||||..++||+|| +|.
T Consensus 430 ~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~--------- 496 (556)
T 4a2p_A 430 RDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA--------- 496 (556)
T ss_dssp ------------------------CC---EEEEEC-----------CEEEEETCCSCHHHHHHC----------------
T ss_pred cccccccCHHHHHHHHHHhcccCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---------
Confidence 667778999999999999998 5443 89999999999999999999999999999988888887 554
Q ss_pred cccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhcc
Q psy10448 745 ATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVR 809 (1001)
Q Consensus 745 ~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~ 809 (1001)
+++.+|.|++.++++++ +.....|..+...++.
T Consensus 497 -------------------------------~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 497 -------------------------------AGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp ---------------------------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 35789999999999999 6667777777666653
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.8e-35 Score=369.55 Aligned_cols=420 Identities=14% Similarity=0.166 Sum_probs=219.4
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--CCcEEEEeC-cchHHHHHHHHHHHCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAP-LSTIINWEREFETWAP 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--~~p~LIV~P-~sll~qW~~E~~k~~p 322 (1001)
..+|+|||.+++.++. .+.++|++++||+|||++++..+...+..... .+++||||| ..|+.||.++|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 4689999999999886 67889999999999999999988877766432 557999999 5689999999999987
Q ss_pred --CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--h-cCCceeEEEEcCcc
Q psy10448 323 --DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--L-GSIEWAVLVVDEAH 397 (1001)
Q Consensus 323 --~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L-~~~~w~~VIiDEAH 397 (1001)
++.+..++|......... .....++|+|+||+.+...... + ....|++|||||||
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~--------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH 381 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVE--------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH 381 (797)
T ss_dssp GGTCCEEEECCC-----CHH--------------------HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGG
T ss_pred cCCceEEEEeCCcchhhhHH--------------------HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcc
Confidence 788888888764332111 1112568999999999876542 2 23458999999999
Q ss_pred ccCCcccHHHHHHhc---------ccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHH
Q psy10448 398 RLKSNQSKFFKFLSG---------YSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLH 468 (1001)
Q Consensus 398 ~lKN~~Sk~~~al~~---------l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~ 468 (1001)
++.+..+ ....+.. ....++++|||||.+++..++...++. +..|.
T Consensus 382 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~------------------------i~~l~ 436 (797)
T 4a2q_A 382 NTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEH------------------------ICSLC 436 (797)
T ss_dssp GCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHH------------------------HHHHH
T ss_pred ccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHH------------------------HHHHH
Confidence 9987654 2222211 123568999999988765443332221 11222
Q ss_pred hhcCCeeeeeeH---hHHhhcCCCceEEEEEEc--CCHHHHHHHHHHHHHhhhhhCC-----------CCCCccchHHHH
Q psy10448 469 DLLGPHMLRRLK---ADVLKNMPSKSEFIVRVE--LSPMQKKYYKYILTRNFEALNP-----------KGGGQQVSLLNI 532 (1001)
Q Consensus 469 ~lL~~~~lRR~K---~dv~~~LP~k~e~~v~v~--Ls~~Q~~~Y~~il~~~~~~l~~-----------~~~~~~~~ll~~ 532 (1001)
..+....+.... .++...++......+.+. +.+.-...+..++......+.. ............
T Consensus 437 ~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~ 516 (797)
T 4a2q_A 437 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHW 516 (797)
T ss_dssp HHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHH
T ss_pred HhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHH
Confidence 222221111111 122222333333333333 3333222222222211111000 000000111122
Q ss_pred HHHHHHHhcCCCCCchhhhcCCc---------------------CCCh--------------------hhHHHH------
Q psy10448 533 MMDLKKCCNHPYLFPAAAEEAPV---------------------QGGQ--------------------YEIQAL------ 565 (1001)
Q Consensus 533 l~~LRk~c~HP~L~~~~~~~~~~---------------------~~~~--------------------~~~~~l------ 565 (1001)
+..+++.+....+.......... .... .....+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 596 (797)
T 4a2q_A 517 IVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 596 (797)
T ss_dssp HHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 22222222111111000000000 0000 000000
Q ss_pred --------H----HhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 566 --------T----RAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 566 --------~----~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
. ..++|+..|.++|.....
T Consensus 597 ~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~------------------------------------------------- 627 (797)
T 4a2q_A 597 KEPELIALSKDETNENPKLEELVCILDDAYR------------------------------------------------- 627 (797)
T ss_dssp THHHHHHHHHCTTCCCHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHhhcCCCCCChHHHHHHHHHHHHhc-------------------------------------------------
Confidence 0 012233333333332110
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhC------------CCeEEEEEccCCHHHHHHHHHHhcC-CCCCcEEEEEeccc
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGE------------GYKYERIDGNITGSMRQESIDRFNA-PGASQFVFLLSTRS 700 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~------------gi~~~ridG~~s~~eRq~~Id~Fn~-~~~~~~v~LlStra 700 (1001)
.....|+||||+++.+++.|.++|... |..+..++|+++..+|+.++++|++ +... +|+||++
T Consensus 628 -~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~ 703 (797)
T 4a2q_A 628 -YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSV 703 (797)
T ss_dssp -HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEECC
T ss_pred -cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEcCc
Confidence 123467889999999999999999763 6667778899999999999999998 5444 8999999
Q ss_pred cccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 701 GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 701 gg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
+|+|||++.|++||+||+||||..++||+|| +|. +++.+
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~----------------------------------------~~g~~ 742 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA----------------------------------------AGSKC 742 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC------------------------------------------------CCCE
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC----------------------------------------CCceE
Confidence 9999999999999999999999988888887 554 36789
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhHhcc
Q psy10448 781 YRFVTRNSVEERVTQVAKRKMMLTHLVVR 809 (1001)
Q Consensus 781 yrlvt~~TiEE~I~~~~~~K~~l~~~vv~ 809 (1001)
|.|++.++++++ ......|..+...++.
T Consensus 743 i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 743 ILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp EEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999 6666777777666653
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.4e-35 Score=373.26 Aligned_cols=460 Identities=13% Similarity=0.171 Sum_probs=231.2
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--CCcEEEEeC-cchHHHHHHHHHHHCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAP-LSTIINWEREFETWAP 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--~~p~LIV~P-~sll~qW~~E~~k~~p 322 (1001)
..+|+|||.+++.++. .+.++|++++||+|||++++..+...+..... .+++||||| .+|+.||.++|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4689999999999986 67889999999999999999888776554321 467999999 5689999999999986
Q ss_pred --CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--h-cCCceeEEEEcCcc
Q psy10448 323 --DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--L-GSIEWAVLVVDEAH 397 (1001)
Q Consensus 323 --~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L-~~~~w~~VIiDEAH 397 (1001)
++.+..++|+...+.... .....++|+|+||+.+...... + ....|++|||||||
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~--------------------~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH 381 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVE--------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH 381 (936)
T ss_dssp TTTCCEEEECCC-----CCH--------------------HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGG
T ss_pred ccCceEEEEECCcchhhHHH--------------------HhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcc
Confidence 688888888764332111 1123568999999999876542 2 23358999999999
Q ss_pred ccCCcccHHHHHHhcc---------cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHH
Q psy10448 398 RLKSNQSKFFKFLSGY---------SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLH 468 (1001)
Q Consensus 398 ~lKN~~Sk~~~al~~l---------~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~ 468 (1001)
++.+..+ ....+..+ ...++++|||||.+++..++..+++. +..|.
T Consensus 382 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~------------------------i~~L~ 436 (936)
T 4a2w_A 382 NTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEH------------------------ICSLC 436 (936)
T ss_dssp GCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHH------------------------HHHHH
T ss_pred ccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHH------------------------HHHHH
Confidence 9988654 22222221 23568999999998876554433322 22333
Q ss_pred hhcCCeeeeeeH---hHHhhcCCCceEEEEEEc--CCHHHHHHHHHHHHHhhhhhC-----------CCCCCccchHHHH
Q psy10448 469 DLLGPHMLRRLK---ADVLKNMPSKSEFIVRVE--LSPMQKKYYKYILTRNFEALN-----------PKGGGQQVSLLNI 532 (1001)
Q Consensus 469 ~lL~~~~lRR~K---~dv~~~LP~k~e~~v~v~--Ls~~Q~~~Y~~il~~~~~~l~-----------~~~~~~~~~ll~~ 532 (1001)
..+....+.... .++...++......+.+. +.+.....+..++......+. ....-........
T Consensus 437 ~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~ 516 (936)
T 4a2w_A 437 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHW 516 (936)
T ss_dssp HHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHH
T ss_pred HhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHH
Confidence 333332222211 233333444444444444 444444444444333221110 0000011122334
Q ss_pred HHHHHHHhcCCCCCchhhhcCCcCC--------ChhhHHHHHHhhc----hHHHHHHHHHHHHHcCCccccchhhhHhhh
Q psy10448 533 MMDLKKCCNHPYLFPAAAEEAPVQG--------GQYEIQALTRAAG----KLVLLSKMLKKLKEDGHRYGIKPEWLIANR 600 (1001)
Q Consensus 533 l~~LRk~c~HP~L~~~~~~~~~~~~--------~~~~~~~l~~~S~----Kl~~L~klL~~l~~~g~rvli~~e~~~~~~ 600 (1001)
+..+++.+....+............ ..+.......... -...+..++..+...+.. ..+......
T Consensus 517 l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~---~~e~~l~~~ 593 (936)
T 4a2w_A 517 IVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT---ELEQHLTAK 593 (936)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCC---HHHHHHHHH
Confidence 4444444433322211100000000 0000000000000 011112222222211100 000000000
Q ss_pred hcc-----cccccCCccchhhcccCCCcCccccccccc--cCCCCceeEEEeccHHHHHHHHHHHhhC------------
Q psy10448 601 VIN-----SKTLRDGSTIYLVKWRDLPYDKATWEDENE--DIPGLKESIEFYNMTKMLDILEDYLDGE------------ 661 (1001)
Q Consensus 601 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~KvIIFsq~~~~ldiL~~~L~~~------------ 661 (1001)
... .....+.. ...++.........+ ......|+||||+++.+++.|.++|...
T Consensus 594 ~~~~~~~l~~~~~~~~-------~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~ 666 (936)
T 4a2w_A 594 FQEKEPELIALSKDET-------NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLM 666 (936)
T ss_dssp HHHHHHHHHHHHTSTT-------CCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-
T ss_pred HHHHHHHHHHhhhccC-------CCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEe
Confidence 000 00000000 000000000000111 1134679999999999999999999976
Q ss_pred CCeEEEEEccCCHHHHHHHHHHhcC-CCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 662 GYKYERIDGNITGSMRQESIDRFNA-PGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 662 gi~~~ridG~~s~~eRq~~Id~Fn~-~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|..+..++|+++..+|++++++|++ +... +|+||+++|+|||++.|++||+||++|||..++||+|| +|.
T Consensus 667 G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~----- 737 (936)
T 4a2w_A 667 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA----- 737 (936)
T ss_dssp ---------------------------CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC------------
T ss_pred cCCCcccCCCCCHHHHHHHHHHhhccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-----
Confidence 5666677888999999999999998 5443 89999999999999999999999999999988888887 554
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhcc
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVR 809 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~ 809 (1001)
+++.+|.|++.+|+|++.. ....|..+...++.
T Consensus 738 -----------------------------------~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 738 -----------------------------------AGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp ------------------------------------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred -----------------------------------CCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 3577899999999999866 55556666565553
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=347.16 Aligned_cols=419 Identities=15% Similarity=0.173 Sum_probs=230.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--CCcEEEEeCc-chHHHHHHHHHHHCC-
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP- 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~p- 322 (1001)
++|+|||.+++.++. .+.++|++++||+|||++++..+...+..... .+++|||||. .|+.||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 579999999999886 67889999999999999999988877765432 4569999996 899999999999975
Q ss_pred -CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--h-cCCceeEEEEcCccc
Q psy10448 323 -DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--L-GSIEWAVLVVDEAHR 398 (1001)
Q Consensus 323 -~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L-~~~~w~~VIiDEAH~ 398 (1001)
++.+..++|......... ......+|+|+||+.+...... + ....|++|||||||+
T Consensus 79 ~~~~~~~~~g~~~~~~~~~--------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQ--------------------HIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TTCCEEEECTTTGGGSCHH--------------------HHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CCcEEEEEcCCCcchhhHH--------------------HHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 678888888764322111 1112468999999999876543 2 334689999999999
Q ss_pred cCCcccHHHHHHhcc---------cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHh
Q psy10448 399 LKSNQSKFFKFLSGY---------SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHD 469 (1001)
Q Consensus 399 lKN~~Sk~~~al~~l---------~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~ 469 (1001)
+.+..+........+ ...++++|||||.+++..++..+++. +..|..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~------------------------~~~l~~ 194 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQH------------------------ICKLCA 194 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHH------------------------HHHHHH
T ss_pred cCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHH------------------------HHHHHH
Confidence 987654222111111 22468999999998874443322211 112222
Q ss_pred hcCCeeeee---eHhHHhhcCCCceEEEEEEc--CCHHHHHHHHHHHHHhhhhhC----------CCCCC--ccchHHHH
Q psy10448 470 LLGPHMLRR---LKADVLKNMPSKSEFIVRVE--LSPMQKKYYKYILTRNFEALN----------PKGGG--QQVSLLNI 532 (1001)
Q Consensus 470 lL~~~~lRR---~K~dv~~~LP~k~e~~v~v~--Ls~~Q~~~Y~~il~~~~~~l~----------~~~~~--~~~~ll~~ 532 (1001)
.+....+.. ...++...++......+.+. +.+.-...+..++......+. ..... .....-..
T Consensus 195 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~ 274 (555)
T 3tbk_A 195 ALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQW 274 (555)
T ss_dssp HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHH
T ss_pred hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHH
Confidence 222111111 11222223333333444443 322222222222221111100 00000 00001111
Q ss_pred HHHHHHHhcCCCCCchhhhcCCcCC--------ChhhHHHHH--------------------------------------
Q psy10448 533 MMDLKKCCNHPYLFPAAAEEAPVQG--------GQYEIQALT-------------------------------------- 566 (1001)
Q Consensus 533 l~~LRk~c~HP~L~~~~~~~~~~~~--------~~~~~~~l~-------------------------------------- 566 (1001)
+..+++.+....+............ ..+......
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (555)
T 3tbk_A 275 IVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEE 354 (555)
T ss_dssp HHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHT
T ss_pred HHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhh
Confidence 1112211111100000000000000 000000000
Q ss_pred -------------HhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccc
Q psy10448 567 -------------RAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633 (1001)
Q Consensus 567 -------------~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1001)
..++|+..|.++|..+...
T Consensus 355 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~------------------------------------------------ 386 (555)
T 3tbk_A 355 KLEELEKVSRDPSNENPKLRDLYLVLQEEYHL------------------------------------------------ 386 (555)
T ss_dssp THHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred hhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc------------------------------------------------
Confidence 0123333333333332211
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhCC------------CeEEEEEccCCHHHHHHHHHHhcC-CCCCcEEEEEeccc
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGEG------------YKYERIDGNITGSMRQESIDRFNA-PGASQFVFLLSTRS 700 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~g------------i~~~ridG~~s~~eRq~~Id~Fn~-~~~~~~v~LlStra 700 (1001)
....|+||||++..+++.|.++|...| ..+..++|+++..+|++++++|++ +... +|+||++
T Consensus 387 --~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~ 461 (555)
T 3tbk_A 387 --KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSV 461 (555)
T ss_dssp --CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCC
T ss_pred --CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcch
Confidence 124678899999999999999998763 455666779999999999999998 5444 7899999
Q ss_pred cccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 701 GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 701 gg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
+|+|||++.|++||+||+||||..|+||+|| +| .+++.+
T Consensus 462 ~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR----------------------------------------~~~g~~ 500 (555)
T 3tbk_A 462 ADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GR----------------------------------------ARDSKC 500 (555)
T ss_dssp TTCCEETTSCSEEEEESCCSSCCCEECSSCC-CT----------------------------------------TTSCEE
T ss_pred hhcCCccccCCEEEEeCCCCCHHHHHHhcCc-Cc----------------------------------------CCCceE
Confidence 9999999999999999999999988888877 33 246899
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhHhc
Q psy10448 781 YRFVTRNSVEERVTQVAKRKMMLTHLVV 808 (1001)
Q Consensus 781 yrlvt~~TiEE~I~~~~~~K~~l~~~vv 808 (1001)
|.|++.++.++. ..+...|..+.+..+
T Consensus 501 ~~l~~~~~~~~~-~~~~~~~e~~~~~~~ 527 (555)
T 3tbk_A 501 FLLTSSADVIEK-EKANMIKEKIMNESI 527 (555)
T ss_dssp EEEESCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHH-HHHhhHHHHHHHHHH
Confidence 999999999988 445555555555544
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=8.3e-35 Score=318.89 Aligned_cols=214 Identities=19% Similarity=0.207 Sum_probs=161.8
Q ss_pred CCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCC---CCC-Cc---cchHHHHHHHHHHHhcCCCCCchhhhcCCcCCCh
Q psy10448 487 MPSKSEFIVRVELSPMQKKYYKYILTRNFEALNP---KGG-GQ---QVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQ 559 (1001)
Q Consensus 487 LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~---~~~-~~---~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~ 559 (1001)
.|++.|++++|.||+.|+++|+.+++.+...+.. ..+ .. ..++.+++|+||+|||||||+......... ...
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~-~~~ 98 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSL-ITR 98 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCS-CST
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccc-ccc
Confidence 4999999999999999999999999876654431 111 11 236789999999999999998532211111 111
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 560 YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 560 ~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
.....++..|||+.+|.++|.++++.||+|+
T Consensus 99 ~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVL------------------------------------------------- 129 (328)
T 3hgt_A 99 DVPAHLAENSGKFSVLRDLINLVQEYETETA------------------------------------------------- 129 (328)
T ss_dssp THHHHHHHTCHHHHHHHHHHHHHTTSCEEEE-------------------------------------------------
T ss_pred chhhHHHHcCccHHHHHHHHHHHHhCCCEEE-------------------------------------------------
Confidence 2256788899999999999999999988887
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccc-----cccCCEEE
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGIN-----LATADTVI 714 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GIN-----L~~Ad~VI 714 (1001)
||||++++||+|+++|..+|++|.|+||++.. .+++. .++..+++|+ |++||.|+| |++||+||
T Consensus 130 ---Ifsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~------~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 130 ---IVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA------NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp ---EEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEE
T ss_pred ---EEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc------ccCCceEEEE-ECCCCCCcCcccccCCCCCEEE
Confidence 99999999999999999999999999999543 33221 1345567776 668999987 67788888
Q ss_pred EecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcch-hhHhhhhhhc--CCCCeEEEEEEEeCCCHHH
Q psy10448 715 IYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHND-IQAFSRAHRI--GQQNKVMIYRFVTRNSVEE 791 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d-~QA~~RahRi--GQ~k~V~Vyrlvt~~TiEE 791 (1001)
+||++|||+ ++ .||+.|+||+ ||+|+|.||||++.+|||+
T Consensus 199 ~~DsdwNp~-------------------------------------~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 199 CLDTTVDTS-------------------------------------QKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp ECSTTCCTT-------------------------------------SHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred EECCCCCCC-------------------------------------ChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 888888877 88 9999999999 7899999999999999999
Q ss_pred HHHHHHH
Q psy10448 792 RVTQVAK 798 (1001)
Q Consensus 792 ~I~~~~~ 798 (1001)
.+++..+
T Consensus 242 ~~l~~~~ 248 (328)
T 3hgt_A 242 CRLFFGK 248 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHccC
Confidence 9998754
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.6e-32 Score=325.72 Aligned_cols=349 Identities=12% Similarity=0.124 Sum_probs=240.1
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHH--CC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETW--AP 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~--~p 322 (1001)
..+|+|||.+++.++.. +.++||+++||+|||++++.++....... .+++|||||. +|+.||.++|.+| .+
T Consensus 111 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp EECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 35899999999998874 36799999999999999998887776543 3479999995 7889999999998 45
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
...+..++|....... .....+|+|+||+.+.+..... ..+|++|||||||++.+.
T Consensus 185 ~~~v~~~~~~~~~~~~-----------------------~~~~~~I~i~T~~~l~~~~~~~-~~~~~liIiDE~H~~~~~ 240 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK-----------------------YKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK 240 (510)
T ss_dssp GGGEEECGGGCCTTGG-----------------------GCTTCSEEEEEHHHHTTSCGGG-GGGEEEEEEETGGGCCHH
T ss_pred ccceEEEecCCccccc-----------------------cccCCcEEEEeHHHHhhchhhh-hhcCCEEEEECCcCCCcc
Confidence 5566666654322110 1235689999999987763322 236899999999999763
Q ss_pred ccHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeeeHh
Q psy10448 403 QSKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKA 481 (1001)
Q Consensus 403 ~Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K~ 481 (1001)
.....+..+ ...++++||||| .+...+++.+..++++..+.... ....
T Consensus 241 --~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~- 289 (510)
T 2oca_A 241 --SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVTT---------------------------SKLM- 289 (510)
T ss_dssp --HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCCCC---------------------------C----
T ss_pred --cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeCH---------------------------HHHh-
Confidence 344455666 567899999999 55555566665555543211000 0000
Q ss_pred HHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChhh
Q psy10448 482 DVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYE 561 (1001)
Q Consensus 482 dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~~ 561 (1001)
....+++.....+.+.++........ +.. ... .+...
T Consensus 290 -~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~---~~~~~---------------------- 326 (510)
T 2oca_A 290 -EDGQVTELKINSIFLRYPDEFTTKLK--------------GKT---YQE---EIKII---------------------- 326 (510)
T ss_dssp -------CCEEEEEEEECCHHHHHHHT--------------TCC---HHH---HHHHH----------------------
T ss_pred -hCCcCCCceEEEEeecCChHHhcccc--------------ccc---hHH---HHHHH----------------------
Confidence 01146777777788888776541110 000 000 01111
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCcee
Q psy10448 562 IQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKES 641 (1001)
Q Consensus 562 ~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kv 641 (1001)
.....+...+.+++......+. .++
T Consensus 327 ----~~~~~~~~~l~~~l~~~~~~~~---------------------------------------------------~~~ 351 (510)
T 2oca_A 327 ----TGLSKRNKWIAKLAIKLAQKDE---------------------------------------------------NAF 351 (510)
T ss_dssp ----HTCHHHHHHHHHHHHHHHTTTC---------------------------------------------------EEE
T ss_pred ----hccHHHHHHHHHHHHHHHhcCC---------------------------------------------------CeE
Confidence 1122344445555555443333 234
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEec-cccccccccccCCEEEEecCCC
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLST-RSGGLGINLATADTVIIYDSDW 720 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlSt-ragg~GINL~~Ad~VIi~D~~W 720 (1001)
|||+. +..++.|.+.|...+.++..++|+++..+|+++++.|+++... +|++| .++++|+|++.+++||++|++|
T Consensus 352 ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~---vLv~T~~~~~~GiDip~v~~vi~~~~~~ 427 (510)
T 2oca_A 352 VMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI---IIVASYGVFSTGISVKNLHHVVLAHGVK 427 (510)
T ss_dssp EEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC---EEEEEHHHHHHSCCCCSEEEEEESSCCC
T ss_pred EEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC---EEEEEcChhhcccccccCcEEEEeCCCC
Confidence 57887 8888889999999988999999999999999999999976654 77888 9999999999999999999999
Q ss_pred CcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCC-eEEEEEEEeCCCHHHHHH
Q psy10448 721 NPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQN-KVMIYRFVTRNSVEERVT 794 (1001)
Q Consensus 721 NP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k-~V~Vyrlvt~~TiEE~I~ 794 (1001)
|+..+.|++||++|.| +.+ .|.||.++...++.++++
T Consensus 428 s~~~~~Q~~GR~gR~g-------------------------------------~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 428 SKIIVLQTIGRVLRKH-------------------------------------GSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp SCCHHHHHHHHHHTTT-------------------------------------CCCCCCEEEEEEEECCBCCSSS
T ss_pred CHHHHHHHHhcccccC-------------------------------------CCCceEEEEEeecchhhhhhhh
Confidence 9996666655555555 444 799999998877655443
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=339.02 Aligned_cols=427 Identities=15% Similarity=0.163 Sum_probs=219.5
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC---CCCcEEEEeCc-chHHHH-HHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH---CKGPFLVSAPL-STIINW-EREFETW 320 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~---~~~p~LIV~P~-sll~qW-~~E~~k~ 320 (1001)
.++|+|||.+++.++. .+.++|++++||+|||++++..+..++.... ..+++|||||. +|+.|| .++|.+|
T Consensus 5 ~~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp --CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 5689999999999987 5778999999999999999998877655432 22569999995 588999 9999999
Q ss_pred CCC-CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH--------hhhcCCceeEE
Q psy10448 321 APD-FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV--------ALLGSIEWAVL 391 (1001)
Q Consensus 321 ~p~-~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~--------~~L~~~~w~~V 391 (1001)
++. +.+..++|+........ ......+|+|+|++.+.... ..+....|++|
T Consensus 81 ~~~~~~v~~~~g~~~~~~~~~--------------------~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 81 LKKWYRVIGLSGDTQLKISFP--------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp HTTTSCEEEEC----CCCCHH--------------------HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred cCcCceEEEEeCCcchhhHHH--------------------hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 976 88888888754321111 11135689999999998754 22344578999
Q ss_pred EEcCccccCCccc--H-HHHHHhc-c-------------cccceEeeecCCCCCC-------HHHHHHhhhccCCCCCCC
Q psy10448 392 VVDEAHRLKSNQS--K-FFKFLSG-Y-------------SIQNKLLLTGTPLQNN-------LEELFHLLNFLTPEKFND 447 (1001)
Q Consensus 392 IiDEAH~lKN~~S--k-~~~al~~-l-------------~~~~rllLTGTPlqN~-------l~EL~~LL~fL~p~~f~~ 447 (1001)
||||||++.+... . ....+.. + ...++++|||||..++ ..++..++..+++..+..
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~ 220 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKT 220 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCC
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEe
Confidence 9999999854321 1 1111211 1 4467899999999863 233444444554422111
Q ss_pred hhHHHHHHccccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEE--EEEEcCCHHHHHHHHHHHHHhhhhhCC--CCC
Q psy10448 448 LTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEF--IVRVELSPMQKKYYKYILTRNFEALNP--KGG 523 (1001)
Q Consensus 448 ~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~--~v~v~Ls~~Q~~~Y~~il~~~~~~l~~--~~~ 523 (1001)
.... ..++...++..... .+.......-......+.......+.. ...
T Consensus 221 ~~~~----------------------------~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~ 272 (699)
T 4gl2_A 221 VKEN----------------------------LDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSD 272 (699)
T ss_dssp CCTT----------------------------HHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSC
T ss_pred ecCc----------------------------hHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchh
Confidence 1000 00111112221112 222222222222222222222211110 000
Q ss_pred CccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChh-hHHHHHHh---hchHHHHHHHHHHHHHcCCc-----------
Q psy10448 524 GQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQY-EIQALTRA---AGKLVLLSKMLKKLKEDGHR----------- 588 (1001)
Q Consensus 524 ~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~-~~~~l~~~---S~Kl~~L~klL~~l~~~g~r----------- 588 (1001)
-........+..+.+.+.+........-.... ..+ ....+... ..-+..+..++.........
T Consensus 273 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (699)
T 4gl2_A 273 FGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL--RKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLK 350 (699)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHH--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 00011111111111111000000000000000 000 00000000 00011111111111110000
Q ss_pred cccchhhhHhhhhc---c-cccccCCccchhhcccCCCcCcccccccc---ccCCCCceeEEEeccHHHHHHHHHHHhhC
Q psy10448 589 YGIKPEWLIANRVI---N-SKTLRDGSTIYLVKWRDLPYDKATWEDEN---EDIPGLKESIEFYNMTKMLDILEDYLDGE 661 (1001)
Q Consensus 589 vli~~e~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~KvIIFsq~~~~ldiL~~~L~~~ 661 (1001)
+......+...... . ........ ....+......... .......++|||+++..+++.|.++|...
T Consensus 351 ~~~~~~~l~~~~~~~~~~l~~~~~~~~-------~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~ 423 (699)
T 4gl2_A 351 LDETDRFLMTLFFENNKMLKRLAENPE-------YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITEN 423 (699)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCC-----------CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSS
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhC
Confidence 00000000000000 0 00000000 00000000000000 01112679999999999999999999987
Q ss_pred ------CCeEEEEEcc--------CCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhh
Q psy10448 662 ------GYKYERIDGN--------ITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQ 727 (1001)
Q Consensus 662 ------gi~~~ridG~--------~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQ 727 (1001)
|+++..++|+ ++..+|++++++|+++... +|++|.++|+|||++.+++||+||++|||..++|
T Consensus 424 ~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Q 500 (699)
T 4gl2_A 424 EKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 500 (699)
T ss_dssp CSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHH
T ss_pred ccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHH
Confidence 9999999999 9999999999999986654 7999999999999999999999999999999999
Q ss_pred hhhhhhhcc
Q psy10448 728 AFSRAHRIG 736 (1001)
Q Consensus 728 riGRi~RiG 736 (1001)
|+||++|.|
T Consensus 501 r~GRArr~g 509 (699)
T 4gl2_A 501 ARGRARADE 509 (699)
T ss_dssp HHTTSCSSS
T ss_pred HcCCCCCCC
Confidence 888864433
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.98 E-value=2.5e-31 Score=329.22 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=124.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--CCcEEEEeCc-chHHHHHHHHHHHCC-
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP- 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~p- 322 (1001)
.+|+|||.+++.|+. .+.++|++++||+|||++++.++...+..... .+++|||+|. +|+.||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 579999999999987 57899999999999999999988876655432 2579999995 899999999999986
Q ss_pred -CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--h-cCCceeEEEEcCccc
Q psy10448 323 -DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--L-GSIEWAVLVVDEAHR 398 (1001)
Q Consensus 323 -~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L-~~~~w~~VIiDEAH~ 398 (1001)
++.+..++|....+.... ......+|+|+||+.+.+.... + ....|.+|||||||+
T Consensus 88 ~~~~v~~~~g~~~~~~~~~--------------------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~ 147 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVE--------------------QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 147 (696)
T ss_dssp TTCCEEEECSSSCSSSCHH--------------------HHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGG
T ss_pred CCceEEEEeCCccccccHH--------------------HhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCc
Confidence 678888888653321111 0112468999999999886543 2 345689999999999
Q ss_pred cCCcccHHHHH---Hhc-c-----cccceEeeecCCCCCC-------HHHHHHhhhccCC
Q psy10448 399 LKSNQSKFFKF---LSG-Y-----SIQNKLLLTGTPLQNN-------LEELFHLLNFLTP 442 (1001)
Q Consensus 399 lKN~~Sk~~~a---l~~-l-----~~~~rllLTGTPlqN~-------l~EL~~LL~fL~p 442 (1001)
+.+..+..... +.. + ...++++|||||..++ +..+..++..++.
T Consensus 148 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~ 207 (696)
T 2ykg_A 148 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDA 207 (696)
T ss_dssp CSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTC
T ss_pred ccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCC
Confidence 98765322221 111 1 3467899999998554 4455555554444
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=2.9e-31 Score=322.43 Aligned_cols=348 Identities=16% Similarity=0.177 Sum_probs=205.9
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCC-CCeEEEcCCCCCHHHHHHHHHHHHHHcC------CCCCcEEEEeC-cchHHHHH-
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQN-IDTILADEMGLGKTIQTITFLYSLFKEG------HCKGPFLVSAP-LSTIINWE- 314 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~-~g~ILADemGLGKTiqaIa~l~~l~~~~------~~~~p~LIV~P-~sll~qW~- 314 (1001)
..+..|+|||.++++++...+.++ .+++|+++||+|||++++.++..++..+ ...+++||||| .+|+.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 457799999999999998766655 5589999999999999999998887764 13456999999 78889999
Q ss_pred HHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH------hhhcCCce
Q psy10448 315 REFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV------ALLGSIEW 388 (1001)
Q Consensus 315 ~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~------~~L~~~~w 388 (1001)
++|..|.+.. ..+.+. ......+|+|+||+.+.... ..+....|
T Consensus 254 ~~~~~~~~~~--~~~~~~----------------------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 254 KTFTPFGDAR--HKIEGG----------------------------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp -CCTTTCSSE--EECCC------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred HHHHhcchhh--hhhhcc----------------------------CCCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 8888775432 111110 11235689999999998753 33445568
Q ss_pred eEEEEcCccccCCcc-cHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHH
Q psy10448 389 AVLVVDEAHRLKSNQ-SKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRL 467 (1001)
Q Consensus 389 ~~VIiDEAH~lKN~~-Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L 467 (1001)
++|||||||++.+.. +.....+..+...++++|||||..+...+++.++. +..+. ..-.+.+.
T Consensus 304 ~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~-----------~~~~~~i~-- 367 (590)
T 3h1t_A 304 DLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT-----------YSLRQGID-- 367 (590)
T ss_dssp SEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE-----------ECHHHHHH--
T ss_pred CEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC---CceEe-----------cCHHHHhh--
Confidence 999999999997653 34444555667788999999999887766655542 11100 00000000
Q ss_pred HhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCc
Q psy10448 468 HDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFP 547 (1001)
Q Consensus 468 ~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~ 547 (1001)
... +++.....+.+....................+.
T Consensus 368 ~~~----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 403 (590)
T 3h1t_A 368 DGF----------------LAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP---------------------------- 403 (590)
T ss_dssp HTS----------------SCCEEEEEEEETTCC----------------------------------------------
T ss_pred CCc----------------cCCcEEEEeeeeeeccccccccccccccccccc----------------------------
Confidence 112 333333333333322111111111000000000
Q ss_pred hhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccc
Q psy10448 548 AAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKAT 627 (1001)
Q Consensus 548 ~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1001)
...... ...........+...+.+.+..+....
T Consensus 404 ----~~~~~~--~~~~~~~~~~~r~~~i~~~l~~~l~~~----------------------------------------- 436 (590)
T 3h1t_A 404 ----DGEYQT--KDFERVIALKARTDAFAKHLTDFMKRT----------------------------------------- 436 (590)
T ss_dssp ---------C--CSHHHHHHHHHTHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred ----cccCCH--HHhhhHhcChHHHHHHHHHHHHHHHhc-----------------------------------------
Confidence 000000 001111222233333333333222111
Q ss_pred cccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCe--------EEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecc
Q psy10448 628 WEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYK--------YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTR 699 (1001)
Q Consensus 628 ~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~--------~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStr 699 (1001)
....|+||||+....++.|.+.|...+.. +..++|.++ ++|++++++|++++....++|+||+
T Consensus 437 --------~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~ 507 (590)
T 3h1t_A 437 --------DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQ 507 (590)
T ss_dssp --------CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESS
T ss_pred --------CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECC
Confidence 12357779999999999999999876543 678899876 3799999999997665557999999
Q ss_pred ccccccccccCCEEEEecCCCCcchhhhhhhhhhhccC
Q psy10448 700 SGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 700 agg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq 737 (1001)
++++|||++.+++||+++++||+..++|++||++|.|+
T Consensus 508 ~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 508 LLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999999999999885
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=3.5e-29 Score=287.35 Aligned_cols=306 Identities=14% Similarity=0.172 Sum_probs=208.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHC---CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---PD 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p~ 323 (1001)
.|+|||.+++.++. .+.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.++. ++
T Consensus 30 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 49999999998776 568899999999999999887777665444445579999995 78899999999986 46
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN 401 (1001)
..+..+.|........... .....+|+|+|++.+...... +....+++||+||||++.+
T Consensus 106 ~~~~~~~g~~~~~~~~~~~-------------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVL-------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp CCEEEECTTSCHHHHHHHH-------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred eEEEEEeCCCCHHHHHHHH-------------------hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 7888888765433221100 012357999999999875432 3345789999999999976
Q ss_pred ccc---HHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC-Ceee
Q psy10448 402 NQS---KFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG-PHML 476 (1001)
Q Consensus 402 ~~S---k~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~-~~~l 476 (1001)
... .....+... .....+++||||-.+ ..++. ...+. +..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~---------------------------------~~~~~~~~~~ 212 (391)
T 1xti_A 167 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKE-IRPVC---------------------------------RKFMQDPMEI 212 (391)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESSCCST-HHHHH---------------------------------HHHCSSCEEE
T ss_pred ccchHHHHHHHHhhCCCCceEEEEEeeCCHH-HHHHH---------------------------------HHHcCCCeEE
Confidence 321 122223333 245679999998532 11111 01111 1111
Q ss_pred eeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcC
Q psy10448 477 RRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQ 556 (1001)
Q Consensus 477 RR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~ 556 (1001)
..... ............+.+ .
T Consensus 213 ~~~~~-~~~~~~~~~~~~~~~--~-------------------------------------------------------- 233 (391)
T 1xti_A 213 FVDDE-TKLTLHGLQQYYVKL--K-------------------------------------------------------- 233 (391)
T ss_dssp ECCCC-CCCCCTTCEEEEEEC--C--------------------------------------------------------
T ss_pred EecCc-cccCcccceEEEEEc--C--------------------------------------------------------
Confidence 00000 000000000000000 0
Q ss_pred CChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCC
Q psy10448 557 GGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIP 636 (1001)
Q Consensus 557 ~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1001)
...|...+..++... .
T Consensus 234 -----------~~~~~~~l~~~l~~~--~--------------------------------------------------- 249 (391)
T 1xti_A 234 -----------DNEKNRKLFDLLDVL--E--------------------------------------------------- 249 (391)
T ss_dssp -----------GGGHHHHHHHHHHHS--C---------------------------------------------------
T ss_pred -----------chhHHHHHHHHHHhc--C---------------------------------------------------
Confidence 112333333333321 1
Q ss_pred CCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 637 GLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 637 ~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
..++|||++....++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|.++++|+|++.+++||+|
T Consensus 250 -~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 250 -FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp -CSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---EEEESCCCSSCBCCTTEEEEEES
T ss_pred -CCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---EEEECChhhcCCCcccCCEEEEe
Confidence 24567999999999999999999999999999999999999999999987654 89999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhhccC
Q psy10448 717 DSDWNPHNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 717 D~~WNP~~~iQriGRi~RiGq 737 (1001)
|++|++..++||+||++|.|+
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~ 346 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGT 346 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCC
T ss_pred CCCCCHHHHHHhcccccCCCC
Confidence 999999977777777666664
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=2.3e-28 Score=282.82 Aligned_cols=307 Identities=17% Similarity=0.244 Sum_probs=210.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
+|+|||.+++.++. .+.++|++.+||+|||++++..+...+.......++|||||. .|+.||.+++.+++. ..
T Consensus 59 ~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 49999999999887 677899999999999999887776655433345679999995 688999999999874 35
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..+.|.......... .....+|+|+|++.+...... +....+++||+||||++.+.
T Consensus 135 ~~~~~~g~~~~~~~~~~--------------------~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 194 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRK--------------------LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK 194 (410)
T ss_dssp CEEEECTTSCHHHHHHH--------------------HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST
T ss_pred EEEEEECCCCHHHHHHH--------------------hhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhh
Confidence 56666665543332211 112357999999998765432 34456899999999998765
Q ss_pred c--cHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeee
Q psy10448 403 Q--SKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRL 479 (1001)
Q Consensus 403 ~--Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~ 479 (1001)
. ......+..+ .....+++||||-. ++..++..... .+..+...
T Consensus 195 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~-----------------------------~~~~~~~~ 241 (410)
T 2j0s_A 195 GFKEQIYDVYRYLPPATQVVLISATLPH----EILEMTNKFMT-----------------------------DPIRILVK 241 (410)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEEESCCCH----HHHTTGGGTCS-----------------------------SCEEECCC
T ss_pred hhHHHHHHHHHhCccCceEEEEEcCCCH----HHHHHHHHHcC-----------------------------CCEEEEec
Confidence 4 3334444444 34567999999832 22221111100 11111100
Q ss_pred HhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCCh
Q psy10448 480 KADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQ 559 (1001)
Q Consensus 480 K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~ 559 (1001)
... ..++......+.+.-.
T Consensus 242 ~~~--~~~~~~~~~~~~~~~~----------------------------------------------------------- 260 (410)
T 2j0s_A 242 RDE--LTLEGIKQFFVAVERE----------------------------------------------------------- 260 (410)
T ss_dssp GGG--CSCTTEEEEEEEESST-----------------------------------------------------------
T ss_pred Ccc--ccCCCceEEEEEeCcH-----------------------------------------------------------
Confidence 000 0111111111111100
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 560 YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 560 ~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
..|+..+..++.... . .
T Consensus 261 ---------~~k~~~l~~~~~~~~--~----------------------------------------------------~ 277 (410)
T 2j0s_A 261 ---------EWKFDTLCDLYDTLT--I----------------------------------------------------T 277 (410)
T ss_dssp ---------THHHHHHHHHHHHHT--S----------------------------------------------------S
T ss_pred ---------HhHHHHHHHHHHhcC--C----------------------------------------------------C
Confidence 012223333332211 1 2
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|||++.+++||+||++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p 354 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDVWARGLDVPQVSLIINYDLP 354 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred cEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEECChhhCcCCcccCCEEEEECCC
Confidence 566999999999999999999999999999999999999999999987654 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~ 738 (1001)
|++..++||+||++|.|+.
T Consensus 355 ~s~~~~~Qr~GR~gR~g~~ 373 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGRK 373 (410)
T ss_dssp SSHHHHHHHHTTSSGGGCC
T ss_pred CCHHHHHHhcccccCCCCc
Confidence 9999888888888777754
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=1.6e-28 Score=282.96 Aligned_cols=304 Identities=17% Similarity=0.224 Sum_probs=206.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
+|+|||.+++.++. .+.++++..+||+|||++++..+............+|||||. .++.||.+++.++++ +.
T Consensus 43 ~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 59999999999887 457799999999999999887776665443344469999995 788999999999975 45
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..+.|.......... .....+|+|+|++.+...... .....+++||+||||++.+.
T Consensus 119 ~~~~~~g~~~~~~~~~~--------------------~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILR--------------------LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp CEEEECSSSCHHHHHHH--------------------TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred eEEEEeCCcchHHHHHH--------------------hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence 67777766544332211 123568999999998765432 23346899999999998654
Q ss_pred c-cHHHH-HHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhc-CCeeeee
Q psy10448 403 Q-SKFFK-FLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLL-GPHMLRR 478 (1001)
Q Consensus 403 ~-Sk~~~-al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL-~~~~lRR 478 (1001)
. ..... .+..+ .....++||||+-.+ +.+ .+...+ .++.+..
T Consensus 179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~-~~~---------------------------------~~~~~~~~~~~~~~ 224 (400)
T 1s2m_A 179 DFKTIIEQILSFLPPTHQSLLFSATFPLT-VKE---------------------------------FMVKHLHKPYEINL 224 (400)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHH-HHH---------------------------------HHHHHCSSCEEESC
T ss_pred chHHHHHHHHHhCCcCceEEEEEecCCHH-HHH---------------------------------HHHHHcCCCeEEEe
Confidence 3 12222 22333 345679999997311 000 001111 1111100
Q ss_pred eHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCC
Q psy10448 479 LKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGG 558 (1001)
Q Consensus 479 ~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~ 558 (1001)
.. .. ..+........+ .
T Consensus 225 ~~-~~--~~~~~~~~~~~~--~---------------------------------------------------------- 241 (400)
T 1s2m_A 225 ME-EL--TLKGITQYYAFV--E---------------------------------------------------------- 241 (400)
T ss_dssp CS-SC--BCTTEEEEEEEC--C----------------------------------------------------------
T ss_pred cc-cc--ccCCceeEEEEe--c----------------------------------------------------------
Confidence 00 00 000000000000 0
Q ss_pred hhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCC
Q psy10448 559 QYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGL 638 (1001)
Q Consensus 559 ~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1001)
...|+..+..++... . .
T Consensus 242 ---------~~~k~~~l~~~~~~~--~----------------------------------------------------~ 258 (400)
T 1s2m_A 242 ---------ERQKLHCLNTLFSKL--Q----------------------------------------------------I 258 (400)
T ss_dssp ---------GGGHHHHHHHHHHHS--C----------------------------------------------------C
T ss_pred ---------hhhHHHHHHHHHhhc--C----------------------------------------------------C
Confidence 112333343333221 1 2
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|+|++.+++||+||+
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESSCSSSSCCCTTEEEEEESSC
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc---EEEEcCccccCCCccCCCEEEEeCC
Confidence 3567999999999999999999999999999999999999999999987654 8999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~ 738 (1001)
+||+..++||+||++|.|+.
T Consensus 336 p~s~~~~~Qr~GR~gR~g~~ 355 (400)
T 1s2m_A 336 PKTAETYLHRIGRSGRFGHL 355 (400)
T ss_dssp CSSHHHHHHHHCBSSCTTCC
T ss_pred CCCHHHHHHhcchhcCCCCC
Confidence 99999777777777776643
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=3.5e-28 Score=275.84 Aligned_cols=300 Identities=19% Similarity=0.244 Sum_probs=205.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
+|+|||.+++.++.. .+.+++++.+||+|||++++..+..+.... ....+|||||. .++.||.+++.++++ ..
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 699999999988762 336899999999999999888777665443 23459999995 678999999999975 35
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..+.|......... .....+|+|+|++.+...... +....|++||+||||++.+.
T Consensus 104 ~v~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIK---------------------ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp CEEEECTTSCHHHHHH---------------------HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred eEEEEECCcchHHHHh---------------------hcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 5666666544322211 112467999999999876532 33456899999999998664
Q ss_pred c--cHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeee
Q psy10448 403 Q--SKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRL 479 (1001)
Q Consensus 403 ~--Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~ 479 (1001)
. ......+..+ ...+.++|||||..+. .. .+...+..+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~----~~------------------------------~~~~~~~~~~~~~~ 208 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREI----LN------------------------------LAKKYMGDYSFIKA 208 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHH----HH------------------------------HHHHHCCSEEEEEC
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHH----HH------------------------------HHHHHcCCCeEEEe
Confidence 4 2333444444 3456799999994321 11 11111211111000
Q ss_pred HhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCCh
Q psy10448 480 KADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQ 559 (1001)
Q Consensus 480 K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~ 559 (1001)
. .+..... ..+...
T Consensus 209 ~------~~~~~~~-~~~~~~----------------------------------------------------------- 222 (367)
T 1hv8_A 209 K------INANIEQ-SYVEVN----------------------------------------------------------- 222 (367)
T ss_dssp C------SSSSSEE-EEEECC-----------------------------------------------------------
T ss_pred c------CCCCceE-EEEEeC-----------------------------------------------------------
Confidence 0 0000000 000000
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 560 YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 560 ~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
...|+..+.+++. ..+ .
T Consensus 223 --------~~~~~~~l~~~l~---~~~----------------------------------------------------~ 239 (367)
T 1hv8_A 223 --------ENERFEALCRLLK---NKE----------------------------------------------------F 239 (367)
T ss_dssp --------GGGHHHHHHHHHC---STT----------------------------------------------------C
T ss_pred --------hHHHHHHHHHHHh---cCC----------------------------------------------------C
Confidence 0112222322221 222 3
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....++.+.+.|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|+|++.+++||++|++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---EEEECChhhcCCCcccCCEEEEecCC
Confidence 556999999999999999999999999999999999999999999986554 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~ 738 (1001)
||+..++||+||++|.|+.
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~ 335 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKK 335 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSC
T ss_pred CCHHHhhhcccccccCCCc
Confidence 9999777777777776643
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=6.6e-29 Score=287.23 Aligned_cols=307 Identities=18% Similarity=0.237 Sum_probs=198.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
.++|||.+++..+. .+.++|++.+||+|||++++..+...+......+.+|||||. .++.||.+++.+++. ..
T Consensus 62 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 62 KPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 69999999998776 677899999999999999887777665544445569999995 688999999999863 44
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+....|.......... ......+|+|+|++.+...... +....+.+||+||||++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 198 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQK-------------------LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR 198 (414)
T ss_dssp CEEECCCCTTHHHHHHH-------------------HTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT
T ss_pred eEEEEECCcchHHHHHH-------------------HhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhcc
Confidence 55555554443322211 1123568999999998775433 34456889999999998543
Q ss_pred c--cHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC-Ceeeee
Q psy10448 403 Q--SKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG-PHMLRR 478 (1001)
Q Consensus 403 ~--Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~-~~~lRR 478 (1001)
. ......+..+ .....++|||||-. ++..++. ..+. +..+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~------------------------------~~~~~~~~~~~ 244 (414)
T 3eiq_A 199 GFKDQIYDIFQKLNSNTQVVLLSATMPS----DVLEVTK------------------------------KFMRDPIRILV 244 (414)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEECSCCCH----HHHHHHT------------------------------TTCSSCEEECC
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEEecCH----HHHHHHH------------------------------HHcCCCEEEEe
Confidence 3 4455555555 34557999999831 1111111 1111 000000
Q ss_pred eHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCC
Q psy10448 479 LKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGG 558 (1001)
Q Consensus 479 ~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~ 558 (1001)
... ..+.... .+.+. .. ..
T Consensus 245 ~~~----~~~~~~~------------------------------------------------~~~~~------~~--~~- 263 (414)
T 3eiq_A 245 KKE----ELTLEGI------------------------------------------------RQFYI------NV--ER- 263 (414)
T ss_dssp CCC----CCCTTSC------------------------------------------------CEEEE------EC--SS-
T ss_pred cCC----ccCCCCc------------------------------------------------eEEEE------Ee--Ch-
Confidence 000 0000000 00000 00 00
Q ss_pred hhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCC
Q psy10448 559 QYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGL 638 (1001)
Q Consensus 559 ~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1001)
...|+..+..++... ..
T Consensus 264 ---------~~~~~~~l~~~~~~~------------------------------------------------------~~ 280 (414)
T 3eiq_A 264 ---------EEWKLDTLCDLYETL------------------------------------------------------TI 280 (414)
T ss_dssp ---------STTHHHHHHHHHHSS------------------------------------------------------CC
T ss_pred ---------HHhHHHHHHHHHHhC------------------------------------------------------CC
Confidence 012333444333221 12
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+.+.|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|||++.+++||+||+
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~ 357 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDL 357 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECSSCC--CCGGGCSCEEESSC
T ss_pred CcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---EEEECCccccCCCccCCCEEEEeCC
Confidence 3567999999999999999999999999999999999999999999886543 7999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~ 738 (1001)
+||+..++||+||++|.|+.
T Consensus 358 p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 358 PTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp CSSTHHHHHHSCCC------
T ss_pred CCCHHHhhhhcCcccCCCCC
Confidence 99999888888888887754
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=4.7e-29 Score=286.36 Aligned_cols=308 Identities=16% Similarity=0.222 Sum_probs=114.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--D 323 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 323 (1001)
.+|+|||.+++.++. .+.++++..+||+|||++++..+...+......+++|||||. .++.||.+++.++++ +
T Consensus 42 ~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 379999999999887 457899999999999999776666554444445579999995 788999999999875 4
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN 401 (1001)
..+..+.|......... .....+|+|+|++.+..... .+....|++||+||||++.+
T Consensus 118 ~~~~~~~g~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAE---------------------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp CCEEEECSSCCHHHHHH---------------------HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred eeEEEEeCCCchHHHHh---------------------hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC
Confidence 66777777554322211 11146799999999877543 23345789999999999743
Q ss_pred c--ccHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC-Ceeee
Q psy10448 402 N--QSKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG-PHMLR 477 (1001)
Q Consensus 402 ~--~Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~-~~~lR 477 (1001)
. .......+..+ .....++|||||-. ++.. .+...+. +..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~------------------------------~~~~~~~~~~~~- 221 (394)
T 1fuu_A 177 SGFKEQIYQIFTLLPPTTQVVLLSATMPN----DVLE------------------------------VTTKFMRNPVRI- 221 (394)
T ss_dssp TTCHHHHHHHHHHSCTTCEEEEECSSCCH----HHHH------------------------------HHHHHCCSCEEE-
T ss_pred CCcHHHHHHHHHhCCCCceEEEEEEecCH----HHHH------------------------------HHHHhcCCCeEE-
Confidence 2 23344444444 34568999999832 1100 0111111 1111
Q ss_pred eeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 478 RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 478 R~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
.+.-.... ... +.+. +..
T Consensus 222 ------------------~~~~~~~~---~~~--------------------------~~~~----~~~----------- 239 (394)
T 1fuu_A 222 ------------------LVKKDELT---LEG--------------------------IKQF----YVN----------- 239 (394)
T ss_dssp ------------------EECC----------------------------------------------------------
T ss_pred ------------------EecCcccc---CCC--------------------------ceEE----EEE-----------
Confidence 00000000 000 0000 000
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
......|...+..++... .
T Consensus 240 -------~~~~~~~~~~l~~~~~~~------------------------------------------------------~ 258 (394)
T 1fuu_A 240 -------VEEEEYKYECLTDLYDSI------------------------------------------------------S 258 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------cCchhhHHHHHHHHHhcC------------------------------------------------------C
Confidence 000011222232222211 1
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
..++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++.. .+|++|.++++|+|++.+++||+||
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS---RILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCC---cEEEECChhhcCCCcccCCEEEEeC
Confidence 2356699999999999999999999999999999999999999999987654 4899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccc
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
++|++..++||+||++|.|+...
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~ 358 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGV 358 (394)
T ss_dssp -----------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCce
Confidence 99999999999998888886654
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=9.7e-28 Score=275.01 Aligned_cols=305 Identities=16% Similarity=0.188 Sum_probs=202.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--D 323 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 323 (1001)
.+|+|||.+++.++... .+.++|++.+||+|||++++..+...+......+.+|||||. .|+.||.+++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 36999999999887621 237899999999999999888777665544445579999995 588999999999873 3
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN 401 (1001)
..+....+..... ......+|+|+|++.+..... .+...++++||+||||++.+
T Consensus 104 ~~~~~~~~~~~~~------------------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 104 ITSQLIVPDSFEK------------------------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp CCEEEESTTSSCT------------------------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred eeEEEEecCchhh------------------------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 3444444332111 123357899999999976543 22344689999999999864
Q ss_pred ccc--HHHH-HHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC-Ceee
Q psy10448 402 NQS--KFFK-FLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG-PHML 476 (1001)
Q Consensus 402 ~~S--k~~~-al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~-~~~l 476 (1001)
... .... ....+. ....+++||||-. .+.+ ++. ..+. +..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~---~~~------------------------------~~~~~~~~~ 205 (395)
T 3pey_A 160 QQGLGDQCIRVKRFLPKDTQLVLFSATFAD-AVRQ---YAK------------------------------KIVPNANTL 205 (395)
T ss_dssp STTHHHHHHHHHHTSCTTCEEEEEESCCCH-HHHH---HHH------------------------------HHSCSCEEE
T ss_pred ccccHHHHHHHHHhCCCCcEEEEEEecCCH-HHHH---HHH------------------------------HhCCCCeEE
Confidence 221 2222 223332 3567999999831 1111 000 0110 0000
Q ss_pred eeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcC
Q psy10448 477 RRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQ 556 (1001)
Q Consensus 477 RR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~ 556 (1001)
..... ..+........+..
T Consensus 206 ~~~~~----~~~~~~~~~~~~~~--------------------------------------------------------- 224 (395)
T 3pey_A 206 ELQTN----EVNVDAIKQLYMDC--------------------------------------------------------- 224 (395)
T ss_dssp CCCGG----GCSCTTEEEEEEEC---------------------------------------------------------
T ss_pred Ecccc----ccccccccEEEEEc---------------------------------------------------------
Confidence 00000 00000000000000
Q ss_pred CChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCC
Q psy10448 557 GGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIP 636 (1001)
Q Consensus 557 ~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1001)
. ....|...+..++...
T Consensus 225 ~---------~~~~~~~~l~~~~~~~------------------------------------------------------ 241 (395)
T 3pey_A 225 K---------NEADKFDVLTELYGLM------------------------------------------------------ 241 (395)
T ss_dssp S---------SHHHHHHHHHHHHTTT------------------------------------------------------
T ss_pred C---------chHHHHHHHHHHHHhc------------------------------------------------------
Confidence 0 0112333333332111
Q ss_pred CCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 637 GLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 637 ~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
...++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|||++.+++||+|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK---VLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---EEEECGGGSSSCCCTTEEEEEES
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---EEEECChhhcCCCcccCCEEEEc
Confidence 124677999999999999999999999999999999999999999999987654 89999999999999999999999
Q ss_pred cCCC------CcchhhhhhhhhhhccCc
Q psy10448 717 DSDW------NPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 717 D~~W------NP~~~iQriGRi~RiGq~ 738 (1001)
|+|| ++..++||+||++|.|+.
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~ 346 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRK 346 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCC
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCC
Confidence 9999 888777777777776643
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.5e-27 Score=265.74 Aligned_cols=290 Identities=16% Similarity=0.198 Sum_probs=193.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
.|+|||.+++.++. +++++++..+||+|||++++..+... ...+|||||. .++.||.+++.++.+ +.
T Consensus 16 ~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 59999999999887 67789999999999999887776543 3459999995 788999999999874 45
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..++|......... .....+|+|+|++.+.+... .+....|++||+||||++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQIN---------------------RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp CEEEECTTSCHHHHHH---------------------HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT
T ss_pred cEEEEECCcchHHHHh---------------------hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc
Confidence 6666766544332211 11236799999999987543 233356899999999998643
Q ss_pred c--cHHHHHHhccccc-ceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeee
Q psy10448 403 Q--SKFFKFLSGYSIQ-NKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRL 479 (1001)
Q Consensus 403 ~--Sk~~~al~~l~~~-~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~ 479 (1001)
. ......+..+... ..+++||||-.. +.. .+...+..+.....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~SAT~~~~----~~~------------------------------~~~~~~~~~~~~~~ 190 (337)
T 2z0m_A 145 GFIDDIKIILAQTSNRKITGLFSATIPEE----IRK------------------------------VVKDFITNYEEIEA 190 (337)
T ss_dssp TCHHHHHHHHHHCTTCSEEEEEESCCCHH----HHH------------------------------HHHHHSCSCEEEEC
T ss_pred ccHHHHHHHHhhCCcccEEEEEeCcCCHH----HHH------------------------------HHHHhcCCceeeec
Confidence 3 2333344444433 456789999321 110 11111111110000
Q ss_pred HhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCCh
Q psy10448 480 KADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQ 559 (1001)
Q Consensus 480 K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~ 559 (1001)
. ...+......+.+.-. .
T Consensus 191 ~----~~~~~~~~~~~~~~~~--~-------------------------------------------------------- 208 (337)
T 2z0m_A 191 C----IGLANVEHKFVHVKDD--W-------------------------------------------------------- 208 (337)
T ss_dssp S----GGGGGEEEEEEECSSS--S--------------------------------------------------------
T ss_pred c----cccCCceEEEEEeChH--H--------------------------------------------------------
Confidence 0 0011111111111000 0
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCc
Q psy10448 560 YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLK 639 (1001)
Q Consensus 560 ~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1001)
. ..+..+.. ....
T Consensus 209 ---~-------------~~~~~~~~---------------------------------------------------~~~~ 221 (337)
T 2z0m_A 209 ---R-------------SKVQALRE---------------------------------------------------NKDK 221 (337)
T ss_dssp ---H-------------HHHHHHHT---------------------------------------------------CCCS
T ss_pred ---H-------------HHHHHHHh---------------------------------------------------CCCC
Confidence 0 00000110 0124
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....++.+...|. .+..++|+++..+|.++++.|+++... +|++|.++++|+|++.+++||+||++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---MLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---EEEEcCccccCCCccCCCEEEEecCC
Confidence 56799999999999998887 578899999999999999999987654 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~ 738 (1001)
|++..++||+||++|.|+.
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~ 313 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRK 313 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCC
T ss_pred CCHHHhhHhcCccccCCCC
Confidence 9999666666666665543
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=3e-26 Score=267.95 Aligned_cols=306 Identities=18% Similarity=0.236 Sum_probs=206.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCC----CCCcEEEEeCc-chHHHHHHHHHHHC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF-KEGH----CKGPFLVSAPL-STIINWEREFETWA 321 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~-~~~~----~~~p~LIV~P~-sll~qW~~E~~k~~ 321 (1001)
+++|+|.+++..+. .++++|++.+||+|||+.++..+...+ .... ....+|||||. .|+.||.+++.+++
T Consensus 78 ~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 58999999998876 778999999999999998776555443 3221 13359999995 68899999999987
Q ss_pred C--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCcc
Q psy10448 322 P--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 322 p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH 397 (1001)
. ...+.+.+|......... .....++|+|+|++.+..... .+....+.+||+||||
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~--------------------~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNE--------------------CITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 213 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHH--------------------HHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH
T ss_pred ccCCcEEEEEECCCCHHHHHH--------------------HhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh
Confidence 4 345556666544332211 112256899999999977543 2233467899999999
Q ss_pred ccCCcc--cHHHHHHhcc---cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC
Q psy10448 398 RLKSNQ--SKFFKFLSGY---SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG 472 (1001)
Q Consensus 398 ~lKN~~--Sk~~~al~~l---~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~ 472 (1001)
++.+.. ....+.+..+ .....+++|||+- .++..+. ...+.
T Consensus 214 ~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~------------------------------~~~l~ 259 (434)
T 2db3_A 214 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP----EEIQRMA------------------------------GEFLK 259 (434)
T ss_dssp HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC----HHHHHHH------------------------------HTTCS
T ss_pred hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC----HHHHHHH------------------------------HHhcc
Confidence 986543 3334444443 3456799999972 1111111 11121
Q ss_pred CeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhc
Q psy10448 473 PHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEE 552 (1001)
Q Consensus 473 ~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~ 552 (1001)
.+....... .....+......+.+.
T Consensus 260 ~~~~i~~~~-~~~~~~~i~~~~~~~~------------------------------------------------------ 284 (434)
T 2db3_A 260 NYVFVAIGI-VGGACSDVKQTIYEVN------------------------------------------------------ 284 (434)
T ss_dssp SCEEEEESS-TTCCCTTEEEEEEECC------------------------------------------------------
T ss_pred CCEEEEecc-ccccccccceEEEEeC------------------------------------------------------
Confidence 111111000 0000000001111110
Q ss_pred CCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccccc
Q psy10448 553 APVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDEN 632 (1001)
Q Consensus 553 ~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1001)
...|...|.+++. ..+.
T Consensus 285 ---------------~~~k~~~l~~~l~---~~~~--------------------------------------------- 301 (434)
T 2db3_A 285 ---------------KYAKRSKLIEILS---EQAD--------------------------------------------- 301 (434)
T ss_dssp ---------------GGGHHHHHHHHHH---HCCT---------------------------------------------
T ss_pred ---------------cHHHHHHHHHHHH---hCCC---------------------------------------------
Confidence 0122223333332 2222
Q ss_pred ccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 633 EDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 633 ~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
++|||++....++.+...|...|+.+..++|+++..+|..++++|+++... +|++|.++++|||++.+++
T Consensus 302 -------~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 -------GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK---VLIATSVASRGLDIKNIKH 371 (434)
T ss_dssp -------TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS---EEEECGGGTSSCCCTTCCE
T ss_pred -------CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEchhhhCCCCcccCCE
Confidence 255999999999999999999999999999999999999999999987654 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCcc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~ 739 (1001)
||+||+|+++..|+||+||++|.|+..
T Consensus 372 VI~~d~p~~~~~y~qriGR~gR~g~~G 398 (434)
T 2db3_A 372 VINYDMPSKIDDYVHRIGRTGRVGNNG 398 (434)
T ss_dssp EEESSCCSSHHHHHHHHTTSSCTTCCE
T ss_pred EEEECCCCCHHHHHHHhcccccCCCCC
Confidence 999999999999999999888888653
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=4.1e-26 Score=264.26 Aligned_cols=307 Identities=20% Similarity=0.275 Sum_probs=203.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHH-HHHHcCC-----------------CCCcEEEEeCc-
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLY-SLFKEGH-----------------CKGPFLVSAPL- 307 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~-~l~~~~~-----------------~~~p~LIV~P~- 307 (1001)
..|+|+|.+++..+. .+.++|+..+||+|||+.++..+. .+..... ....+|||||.
T Consensus 36 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 379999999998765 678899999999999998665444 3333221 11348999995
Q ss_pred chHHHHHHHHHHHCC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--h
Q psy10448 308 STIINWEREFETWAP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--L 383 (1001)
Q Consensus 308 sll~qW~~E~~k~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L 383 (1001)
.|+.||.+++.+++. +..+..++|.......... .....+|+|+|++.+...... +
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD--------------------LERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH--------------------HTTCCSEEEECHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH--------------------hhCCCCEEEEChHHHHHHHHcCCc
Confidence 788999999999863 4667777776544332221 112468999999999875432 3
Q ss_pred cCCceeEEEEcCccccCCcc--cHHHHHHhc--cc---ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHc
Q psy10448 384 GSIEWAVLVVDEAHRLKSNQ--SKFFKFLSG--YS---IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFA 456 (1001)
Q Consensus 384 ~~~~w~~VIiDEAH~lKN~~--Sk~~~al~~--l~---~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~ 456 (1001)
....+++||+||||++.... ......+.. +. ....+++||||-. .+.++ +
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~-~~~~~---~------------------- 228 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK-EIQML---A------------------- 228 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH-HHHHH---H-------------------
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH-HHHHH---H-------------------
Confidence 33467899999999975432 223333332 11 3457999999832 11111 1
Q ss_pred cccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCCce-EEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHH
Q psy10448 457 DISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKS-EFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMD 535 (1001)
Q Consensus 457 ~~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~-e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~ 535 (1001)
...+............ ..++.. ...+.+.
T Consensus 229 -----------~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~------------------------------------- 258 (417)
T 2i4i_A 229 -----------RDFLDEYIFLAVGRVG--STSENITQKVVWVE------------------------------------- 258 (417)
T ss_dssp -----------HHHCSSCEEEEEC------CCSSEEEEEEECC-------------------------------------
T ss_pred -----------HHHcCCCEEEEeCCCC--CCccCceEEEEEec-------------------------------------
Confidence 1111111111110000 011111 1111111
Q ss_pred HHHHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchh
Q psy10448 536 LKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYL 615 (1001)
Q Consensus 536 LRk~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~ 615 (1001)
...|...+.+++...
T Consensus 259 --------------------------------~~~~~~~l~~~l~~~--------------------------------- 273 (417)
T 2i4i_A 259 --------------------------------ESDKRSFLLDLLNAT--------------------------------- 273 (417)
T ss_dssp --------------------------------GGGHHHHHHHHHHTC---------------------------------
T ss_pred --------------------------------cHhHHHHHHHHHHhc---------------------------------
Confidence 011222333333211
Q ss_pred hcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEE
Q psy10448 616 VKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFL 695 (1001)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~L 695 (1001)
....++|||++....++.+.+.|...|+.+..++|+++.++|..+++.|+++... +|
T Consensus 274 --------------------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vl 330 (417)
T 2i4i_A 274 --------------------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---IL 330 (417)
T ss_dssp --------------------CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC---EE
T ss_pred --------------------CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC---EE
Confidence 1234677999999999999999999999999999999999999999999986654 89
Q ss_pred EeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCc
Q psy10448 696 LSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 696 lStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
++|.++++|||++.+++||+||++|++..++||+||++|.|+.
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 373 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC
T ss_pred EECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC
Confidence 9999999999999999999999999999888888888887754
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=8.3e-26 Score=260.83 Aligned_cols=305 Identities=15% Similarity=0.215 Sum_probs=200.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC---C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA---P 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~---p 322 (1001)
..|+|||.+++..+... .+.++|+..+||+|||++++..+...+........+||||| ..++.||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 37999999999877621 24789999999999999987766655544444446999999 557799988888875 4
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEEcCcccc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIiDEAH~l 399 (1001)
...+....+...... ......+|+|+|++.+...... +....+++||+||||++
T Consensus 124 ~~~~~~~~~~~~~~~-----------------------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~ 180 (412)
T 3fht_A 124 ELKLAYAVRGNKLER-----------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 180 (412)
T ss_dssp TCCEEEECTTCCCCT-----------------------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHH
T ss_pred cceEEEeecCcchhh-----------------------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHH
Confidence 556665555432110 1123468999999999776532 33346899999999997
Q ss_pred CC--cccHHH-HHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC-Ce
Q psy10448 400 KS--NQSKFF-KFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG-PH 474 (1001)
Q Consensus 400 KN--~~Sk~~-~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~-~~ 474 (1001)
-. ...... ..+..+. ....+++||||-. +++.++. ..+. +.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~------------------------------~~~~~~~ 226 (412)
T 3fht_A 181 IATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQ------------------------------KVVPDPN 226 (412)
T ss_dssp HSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHH------------------------------HHSSSCE
T ss_pred hhcCCcHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHH------------------------------HhcCCCe
Confidence 43 222222 3333333 3467999999842 1111111 1111 11
Q ss_pred eeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCC
Q psy10448 475 MLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAP 554 (1001)
Q Consensus 475 ~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~ 554 (1001)
.+.-.... ...+......+.+..
T Consensus 227 ~~~~~~~~--~~~~~~~~~~~~~~~------------------------------------------------------- 249 (412)
T 3fht_A 227 VIKLKREE--ETLDTIKQYYVLCSS------------------------------------------------------- 249 (412)
T ss_dssp EECCCGGG--SSCTTEEEEEEECSS-------------------------------------------------------
T ss_pred EEeecccc--ccccCceEEEEEcCC-------------------------------------------------------
Confidence 11100000 001111111111100
Q ss_pred cCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccccccc
Q psy10448 555 VQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENED 634 (1001)
Q Consensus 555 ~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1001)
...|+..+..++... .+
T Consensus 250 -------------~~~~~~~l~~~~~~~--~~------------------------------------------------ 266 (412)
T 3fht_A 250 -------------RDEKFQALCNLYGAI--TI------------------------------------------------ 266 (412)
T ss_dssp -------------HHHHHHHHHHHHHHH--SS------------------------------------------------
T ss_pred -------------hHHHHHHHHHHHhhc--CC------------------------------------------------
Confidence 011222333333221 11
Q ss_pred CCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEE
Q psy10448 635 IPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVI 714 (1001)
Q Consensus 635 ~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VI 714 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|.++++|||++.+++||
T Consensus 267 ----~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi 339 (412)
T 3fht_A 267 ----AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTNVCARGIDVEQVSVVI 339 (412)
T ss_dssp ----SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS---EEEECGGGTSSCCCTTEEEEE
T ss_pred ----CCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc---EEEEcCccccCCCccCCCEEE
Confidence 3566999999999999999999999999999999999999999999987654 899999999999999999999
Q ss_pred EecCCCCc------chhhhhhhhhhhccC
Q psy10448 715 IYDSDWNP------HNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 715 i~D~~WNP------~~~iQriGRi~RiGq 737 (1001)
+||+||++ ..++||+||++|.|+
T Consensus 340 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 368 (412)
T 3fht_A 340 NFDLPVDKDGNPDNETYLHRIGRTGRFGK 368 (412)
T ss_dssp ESSCCBCSSSSBCHHHHHHHHTTSSCTTC
T ss_pred EECCCCCCCCCcchheeecccCcccCCCC
Confidence 99999987 467777777666664
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=5.4e-25 Score=262.93 Aligned_cols=301 Identities=19% Similarity=0.204 Sum_probs=208.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
.++|+|.+++..+. .+.++++..+||.|||+.++..+.. . .+.+|||+| .+|+.||.+++..+ +..+
T Consensus 25 ~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~--~----~g~~lvi~P~~aL~~q~~~~l~~~--gi~~ 92 (523)
T 1oyw_A 25 QFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALL--L----NGLTVVVSPLISLMKDQVDQLQAN--GVAA 92 (523)
T ss_dssp SCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHH--S----SSEEEEECSCHHHHHHHHHHHHHT--TCCE
T ss_pred CCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHH--h----CCCEEEECChHHHHHHHHHHHHHc--CCcE
Confidence 68999999998876 6778999999999999876544332 1 356899999 57889999999987 4556
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh--HhhhcCCceeEEEEcCccccCCcc-
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND--VALLGSIEWAVLVVDEAHRLKSNQ- 403 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d--~~~L~~~~w~~VIiDEAH~lKN~~- 403 (1001)
..+.+............ . ......+|+++|++.+... ...+...++.+|||||||.+...+
T Consensus 93 ~~l~~~~~~~~~~~~~~----~------------~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~ 156 (523)
T 1oyw_A 93 ACLNSTQTREQQLEVMT----G------------CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGH 156 (523)
T ss_dssp EEECTTSCHHHHHHHHH----H------------HHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSS
T ss_pred EEEeCCCCHHHHHHHHH----H------------HhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCC
Confidence 66666543221110000 0 0122468999999999643 234555789999999999986433
Q ss_pred --cHHHHHH----hcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeee
Q psy10448 404 --SKFFKFL----SGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLR 477 (1001)
Q Consensus 404 --Sk~~~al----~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lR 477 (1001)
...+..+ ..+.....++|||||..+...++...+.+-.| .++.
T Consensus 157 ~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~-------------------------------~~~~ 205 (523)
T 1oyw_A 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP-------------------------------LIQI 205 (523)
T ss_dssp CCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC-------------------------------EEEE
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCC-------------------------------eEEe
Confidence 1223333 23345678999999976555555544432211 1110
Q ss_pred eeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCC
Q psy10448 478 RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQG 557 (1001)
Q Consensus 478 R~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~ 557 (1001)
... +-|... +.+ ++.
T Consensus 206 ~~~-----~r~~l~-~~v-~~~---------------------------------------------------------- 220 (523)
T 1oyw_A 206 SSF-----DRPNIR-YML-MEK---------------------------------------------------------- 220 (523)
T ss_dssp CCC-----CCTTEE-EEE-EEC----------------------------------------------------------
T ss_pred CCC-----CCCceE-EEE-EeC----------------------------------------------------------
Confidence 000 011111 111 000
Q ss_pred ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCC
Q psy10448 558 GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPG 637 (1001)
Q Consensus 558 ~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1001)
..++..+.+++... .+
T Consensus 221 -----------~~~~~~l~~~l~~~--~~--------------------------------------------------- 236 (523)
T 1oyw_A 221 -----------FKPLDQLMRYVQEQ--RG--------------------------------------------------- 236 (523)
T ss_dssp -----------SSHHHHHHHHHHHT--TT---------------------------------------------------
T ss_pred -----------CCHHHHHHHHHHhc--CC---------------------------------------------------
Confidence 00111122222211 12
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D 717 (1001)
.++|||++....++.+...|...|+.+..++|+++.++|..+++.|.++... +|++|.++|.|||++.++.||+||
T Consensus 237 -~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 237 -KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp -CCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECTTSCTTTCCTTCCEEEESS
T ss_pred -CcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEechhhCCCCccCccEEEEEC
Confidence 3456999999999999999999999999999999999999999999987654 899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhccCccc
Q psy10448 718 SDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 718 ~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+|+|+..|.||+||++|.|+.+.
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~ 335 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAE 335 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEE
T ss_pred CCCCHHHHHHHhccccCCCCCce
Confidence 99999999999999999997654
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.92 E-value=8.5e-24 Score=245.29 Aligned_cols=296 Identities=15% Similarity=0.149 Sum_probs=199.5
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC-C
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP-D 323 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p-~ 323 (1001)
+.+|+|||.+++..+. .+.++|+..+||+|||+.++..+..... ..+.+|||+| ..|+.||.+++.++++ +
T Consensus 19 ~~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 91 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLADEK 91 (414)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHHHHccCC
Confidence 5678999999998765 6678999999999999966666555442 2345999999 5788999999999986 6
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCC--
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKS-- 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN-- 401 (1001)
..+..++|............. .....++|+|+|++.+......+....+.+||+||||++..
T Consensus 92 ~~v~~~~g~~~~~~~~~~~~~----------------l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~ 155 (414)
T 3oiy_A 92 VKIFGFYSSMKKEEKEKFEKS----------------FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKAS 155 (414)
T ss_dssp CCEEECCTTSCHHHHHHHHHH----------------HHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCH
T ss_pred ceEEEEECCCChhhHHHHHHH----------------hhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhcc
Confidence 788888886654211100000 01123689999999998877667667899999999998632
Q ss_pred -----------cccH-HHHHHhcc------------cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHcc
Q psy10448 402 -----------NQSK-FFKFLSGY------------SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFAD 457 (1001)
Q Consensus 402 -----------~~Sk-~~~al~~l------------~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~ 457 (1001)
.... ....+..+ .....+++||||....+...+ ...+
T Consensus 156 ~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~-----------------~~~~-- 216 (414)
T 3oiy_A 156 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL-----------------FRDL-- 216 (414)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH-----------------HHHH--
T ss_pred chhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH-----------------HHHh--
Confidence 2222 22233322 345679999997665433211 0000
Q ss_pred ccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHH
Q psy10448 458 ISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLK 537 (1001)
Q Consensus 458 ~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LR 537 (1001)
+...+ .+ ....++.... ..+.
T Consensus 217 -------------~~~~~-~~-----~~~~~~~i~~-~~~~--------------------------------------- 237 (414)
T 3oiy_A 217 -------------LNFTV-GR-----LVSVARNITH-VRIS--------------------------------------- 237 (414)
T ss_dssp -------------HSCCS-SC-----CCCCCCSEEE-EEES---------------------------------------
T ss_pred -------------hccCc-Cc-----cccccccchh-eeec---------------------------------------
Confidence 00000 00 0000011010 0000
Q ss_pred HHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhc
Q psy10448 538 KCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVK 617 (1001)
Q Consensus 538 k~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~ 617 (1001)
..|...+..++.. .+.
T Consensus 238 -------------------------------~~~~~~l~~~l~~---~~~------------------------------ 253 (414)
T 3oiy_A 238 -------------------------------SRSKEKLVELLEI---FRD------------------------------ 253 (414)
T ss_dssp -------------------------------SCCHHHHHHHHHH---HCS------------------------------
T ss_pred -------------------------------cCHHHHHHHHHHH---cCC------------------------------
Confidence 0122223333333 223
Q ss_pred ccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEE-EEEccCCHHHHHHHHHHhcCCCCCcEEEEE
Q psy10448 618 WRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYE-RIDGNITGSMRQESIDRFNAPGASQFVFLL 696 (1001)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~-ridG~~s~~eRq~~Id~Fn~~~~~~~v~Ll 696 (1001)
++|||++....++.+...|...|+.+. .++|. +|+ ++.|+++... +|+
T Consensus 254 ----------------------~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~---vLv 302 (414)
T 3oiy_A 254 ----------------------GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN---ILI 302 (414)
T ss_dssp ----------------------SEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS---EEE
T ss_pred ----------------------CEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe---EEE
Confidence 345999999999999999999999998 88884 454 9999987665 677
Q ss_pred e----cccccccccccc-CCEEEEecCC--CCcchhhhhhhhhhhccC
Q psy10448 697 S----TRSGGLGINLAT-ADTVIIYDSD--WNPHNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 697 S----tragg~GINL~~-Ad~VIi~D~~--WNP~~~iQriGRi~RiGq 737 (1001)
+ |.++++|||++. +++||+||+| +++..|+||+||++|.|+
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 7 999999999999 9999999999 999988888888888874
No 30
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.92 E-value=5.8e-24 Score=257.65 Aligned_cols=318 Identities=18% Similarity=0.197 Sum_probs=203.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC----CCCcEEEEeC-cchHHHHHHHHHHHC-
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH----CKGPFLVSAP-LSTIINWEREFETWA- 321 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~----~~~p~LIV~P-~sll~qW~~E~~k~~- 321 (1001)
.|+|||.+++..+. ...+.++|+..+||+|||++++..+...+.... ....+||||| ..|+.||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il--~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPIL--SSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHH--CSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--ccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 49999999997665 124567899999999999987776665544432 1235899999 578899999999874
Q ss_pred -----CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEE
Q psy10448 322 -----PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVV 393 (1001)
Q Consensus 322 -----p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIi 393 (1001)
+...+....|........... .....+|+|+|++.+...... .....+.+|||
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l-------------------~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKM-------------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHH-------------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hcccccceEEEEEECCccHHHHHHHH-------------------hcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 345566666654433322110 112468999999999765432 22345789999
Q ss_pred cCccccCCcc--cHHHHHHhcc---c-----ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHH
Q psy10448 394 DEAHRLKSNQ--SKFFKFLSGY---S-----IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQ 463 (1001)
Q Consensus 394 DEAH~lKN~~--Sk~~~al~~l---~-----~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~ 463 (1001)
||||++.... ......+..+ . ....+++|||+-. .+.++ +..
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~------------------------ 233 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANN------------------------ 233 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTT------------------------
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHH---HHH------------------------
Confidence 9999986543 1222222222 1 3467999999732 11111 110
Q ss_pred HHHHHhhcCC-eeeeeeH-hHHhhcCCCceEE-EEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHh
Q psy10448 464 VKRLHDLLGP-HMLRRLK-ADVLKNMPSKSEF-IVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCC 540 (1001)
Q Consensus 464 ~~~L~~lL~~-~~lRR~K-~dv~~~LP~k~e~-~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c 540 (1001)
.+.. ..+.... ............. .+.++-.
T Consensus 234 ------~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------------------------- 267 (579)
T 3sqw_A 234 ------IMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF---------------------------------------- 267 (579)
T ss_dssp ------TCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST----------------------------------------
T ss_pred ------HcCCCceEEEeecCccccccccccceEEEEecch----------------------------------------
Confidence 0110 0000000 0000000000000 1111000
Q ss_pred cCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccC
Q psy10448 541 NHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRD 620 (1001)
Q Consensus 541 ~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1001)
...+...+..+...+...
T Consensus 268 ---------------------------~~~~~~~~~~l~~~~~~~----------------------------------- 285 (579)
T 3sqw_A 268 ---------------------------ANSIFAAVEHIKKQIKER----------------------------------- 285 (579)
T ss_dssp ---------------------------THHHHHHHHHHHHHHHHT-----------------------------------
T ss_pred ---------------------------hhhHHHHHHHHHHHHhhc-----------------------------------
Confidence 000111122222222211
Q ss_pred CCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhC---CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEe
Q psy10448 621 LPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGE---GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLS 697 (1001)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~---gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlS 697 (1001)
....++|||+.....++.+...|... |+.+..++|+++..+|..+++.|..+.. .+|++
T Consensus 286 ---------------~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~---~vLVa 347 (579)
T 3sqw_A 286 ---------------DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES---GILVC 347 (579)
T ss_dssp ---------------TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS---EEEEE
T ss_pred ---------------CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCC---eEEEE
Confidence 11246679999999999999999887 9999999999999999999999998654 48999
Q ss_pred ccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 698 TRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 698 tragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|.++++|||++.+++||+||+|+++..|+||+||++|.|+...
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 390 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 390 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCce
Confidence 9999999999999999999999999999999999999886543
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.7e-25 Score=265.02 Aligned_cols=307 Identities=17% Similarity=0.215 Sum_probs=180.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
.|++||.+++..+... .+.++|+..+||+|||++++..+...+......+.+||||| ..|+.||.+++.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999776521 24789999999999999988777666555544556999999 55889999999999865443
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCCcc-
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKSNQ- 403 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN~~- 403 (1001)
.+..+....... ......+|+|+|++.+..... .+....+++|||||||++....
T Consensus 219 ~~~~~~~~~~~~----------------------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~ 276 (508)
T 3fho_A 219 KTAFGIKDSVPK----------------------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG 276 (508)
T ss_dssp CEEC--------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--
T ss_pred eEEEEeCCcccc----------------------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC
Confidence 333222111000 112357899999999877543 2334468999999999986421
Q ss_pred --cHHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeeeeH
Q psy10448 404 --SKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLK 480 (1001)
Q Consensus 404 --Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR~K 480 (1001)
......+..+. ....++|||||- +.+.++.. .+.. .+..+.-..
T Consensus 277 ~~~~~~~i~~~~~~~~~~i~lSAT~~-~~~~~~~~------------------~~~~--------------~~~~i~~~~ 323 (508)
T 3fho_A 277 LGDQSMRIKHLLPRNTQIVLFSATFS-ERVEKYAE------------------RFAP--------------NANEIRLKT 323 (508)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESCCS-THHHHHHH------------------HHST--------------TCEEECCCC
T ss_pred cHHHHHHHHHhCCcCCeEEEEeCCCC-HHHHHHHH------------------HhcC--------------CCeEEEecc
Confidence 22223333343 345699999983 22222211 1100 000000000
Q ss_pred hHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCChh
Q psy10448 481 ADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQY 560 (1001)
Q Consensus 481 ~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~~~ 560 (1001)
... ..+......+.+.
T Consensus 324 ~~~--~~~~~~~~~~~~~-------------------------------------------------------------- 339 (508)
T 3fho_A 324 EEL--SVEGIKQLYMDCQ-------------------------------------------------------------- 339 (508)
T ss_dssp CC------CCCCEEEEC---------------------------------------------------------------
T ss_pred ccC--CcccceEEEEECC--------------------------------------------------------------
Confidence 000 0000000000000
Q ss_pred hHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCCce
Q psy10448 561 EIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKE 640 (1001)
Q Consensus 561 ~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 640 (1001)
....|...+..++... ...+
T Consensus 340 ------~~~~k~~~l~~ll~~~------------------------------------------------------~~~~ 359 (508)
T 3fho_A 340 ------SEEHKYNVLVELYGLL------------------------------------------------------TIGQ 359 (508)
T ss_dssp -------CHHHHHHHHHHHC---------------------------------------------------------CCC
T ss_pred ------chHHHHHHHHHHHHhc------------------------------------------------------CCCc
Confidence 0011222232222211 1235
Q ss_pred eEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC-
Q psy10448 641 SIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD- 719 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~- 719 (1001)
+|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|+|++.+++||+||++
T Consensus 360 ~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~---VLVaT~~l~~GiDip~v~~VI~~~~p~ 436 (508)
T 3fho_A 360 SIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK---VLVTTNVIARGIDVSQVNLVVNYDMPL 436 (508)
T ss_dssp EEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC---CCEECC-----CCCTTCCEEEC----C
T ss_pred EEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEeCChhhcCCCccCCCEEEEECCCC
Confidence 67999999999999999999999999999999999999999999987654 79999999999999999999999999
Q ss_pred -----CCcchhhhhhhhhhhccCc
Q psy10448 720 -----WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 720 -----WNP~~~iQriGRi~RiGq~ 738 (1001)
+++..++||+||++|.|+.
T Consensus 437 ~~~~~~s~~~~~Qr~GRagR~g~~ 460 (508)
T 3fho_A 437 DQAGRPDPQTYLHRIGRTGRFGRV 460 (508)
T ss_dssp C-----CTHHHHHTTSCCC-----
T ss_pred cccCCCCHHHHHHHhhhcCCCCCC
Confidence 6777777777777776643
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.92 E-value=4.4e-24 Score=257.97 Aligned_cols=310 Identities=16% Similarity=0.133 Sum_probs=207.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeE
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYV 326 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v 326 (1001)
.++|+|.+++..+. .+.++|+..+||.|||+..+..+.. ..+.+|||+| .+|+.||.+.+.++ +..+
T Consensus 44 ~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~~ 111 (591)
T 2v1x_A 44 KFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GISA 111 (591)
T ss_dssp SCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCCE
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCcE
Confidence 68999999998876 6788999999999999876554432 1356999999 58889999999998 5666
Q ss_pred EEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh---Hh----hhcCCceeEEEEcCcccc
Q psy10448 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND---VA----LLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 327 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d---~~----~L~~~~w~~VIiDEAH~l 399 (1001)
..+.|........... .. +.......+|+++|++.+... .. .+....+.+|||||||.+
T Consensus 112 ~~l~~~~~~~~~~~~~----~~----------l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~i 177 (591)
T 2v1x_A 112 TMLNASSSKEHVKWVH----AE----------MVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCC 177 (591)
T ss_dssp EECCSSCCHHHHHHHH----HH----------HHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGG
T ss_pred EEEeCCCCHHHHHHHH----HH----------hhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccc
Confidence 6666654332211100 00 001234678999999988542 12 222347899999999997
Q ss_pred CCcc-------cHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcC
Q psy10448 400 KSNQ-------SKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLG 472 (1001)
Q Consensus 400 KN~~-------Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~ 472 (1001)
.... ..+......+.....++|||||-.....++...+..-.
T Consensus 178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~------------------------------- 226 (591)
T 2v1x_A 178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK------------------------------- 226 (591)
T ss_dssp STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS-------------------------------
T ss_pred cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC-------------------------------
Confidence 5422 12112223345567899999995433333333322111
Q ss_pred CeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhc
Q psy10448 473 PHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEE 552 (1001)
Q Consensus 473 ~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~ 552 (1001)
+..+... .+-|.. .+.+....+
T Consensus 227 ~~~~~~~-----~~r~nl-~~~v~~~~~---------------------------------------------------- 248 (591)
T 2v1x_A 227 CFTFTAS-----FNRPNL-YYEVRQKPS---------------------------------------------------- 248 (591)
T ss_dssp CEEEECC-----CCCTTE-EEEEEECCS----------------------------------------------------
T ss_pred cEEEecC-----CCCccc-EEEEEeCCC----------------------------------------------------
Confidence 1111100 011111 111110000
Q ss_pred CCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCcccccccc
Q psy10448 553 APVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDEN 632 (1001)
Q Consensus 553 ~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1001)
.+...+..++..+...
T Consensus 249 -----------------~~~~~~~~l~~~l~~~----------------------------------------------- 264 (591)
T 2v1x_A 249 -----------------NTEDFIEDIVKLINGR----------------------------------------------- 264 (591)
T ss_dssp -----------------SHHHHHHHHHHHHTTT-----------------------------------------------
T ss_pred -----------------cHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 0000111111111110
Q ss_pred ccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCE
Q psy10448 633 EDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADT 712 (1001)
Q Consensus 633 ~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~ 712 (1001)
....++|||+.....++.+...|...|+.+..++|+++..+|..+++.|..+... +|++|.++|.|||++.++.
T Consensus 265 ---~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~ 338 (591)
T 2v1x_A 265 ---YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRF 338 (591)
T ss_dssp ---TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEE
T ss_pred ---ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccE
Confidence 0124667999999999999999999999999999999999999999999987655 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhhccCccccc
Q psy10448 713 VIIYDSDWNPHNDIQAFSRAHRIGQQNKYI 742 (1001)
Q Consensus 713 VIi~D~~WNP~~~iQriGRi~RiGq~~~~L 742 (1001)
||+||+|+++..|+|++||++|.|+.+.++
T Consensus 339 VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 339 VIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp EEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred EEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 999999999999999999999999876533
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=8.2e-24 Score=255.38 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=88.8
Q ss_pred ceeEEEeccHHHHHHHHHHHhhC---CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGE---GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII 715 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~---gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi 715 (1001)
.++|||++....++.+...|... |+.+..++|+++..+|..+++.|.++.. .+|++|.+++.|||++.+++||+
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~---~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEE
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCC---CEEEEcchhhcCCCcccCCEEEE
Confidence 46679999999999999999886 9999999999999999999999998654 48999999999999999999999
Q ss_pred ecCCCCcchhhhhhhhhhhccCc
Q psy10448 716 YDSDWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 716 ~D~~WNP~~~iQriGRi~RiGq~ 738 (1001)
||+|+++..|+||+||++|.|+.
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~ 439 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKE 439 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCC
T ss_pred ECCCCchhhhhhhcCccccCCCC
Confidence 99999999898888888887744
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=5.3e-25 Score=260.56 Aligned_cols=308 Identities=15% Similarity=0.236 Sum_probs=106.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC---C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA---P 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~---p 322 (1001)
..|+|+|.+++..+.. ..+.++|++.+||+|||++++..+...+........+|||+| ..|..||.+.+.++. +
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3699999999987752 124789999999999999977666554444333336999999 567788877776654 5
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEEcCcccc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIiDEAH~l 399 (1001)
.+.+....+...... ......+|+|+|++.+...... +...++.+|||||||++
T Consensus 191 ~~~~~~~~~~~~~~~-----------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER-----------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp TCCEEEESTTCCCCT-----------------------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred CceEEEEeCCccccc-----------------------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 566665555432110 1123457999999999776532 33346889999999998
Q ss_pred CCc--cc-HHHHHHhccc-ccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCee
Q psy10448 400 KSN--QS-KFFKFLSGYS-IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHM 475 (1001)
Q Consensus 400 KN~--~S-k~~~al~~l~-~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~ 475 (1001)
... .. .....+..+. ....+++||||-. +++.+.. ..
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~------------------------------~~----- 288 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQ------------------------------KV----- 288 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHHH------------------------------HH-----
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCH----HHHHHHH------------------------------HH-----
Confidence 532 12 2222333333 3457999999832 1111111 11
Q ss_pred eeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 476 LRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 476 lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
+|... .+.+ ....... . .+.+ .++..
T Consensus 289 -----------~~~~~--~i~~--~~~~~~~-~--------------------------~~~~----~~~~~-------- 314 (479)
T 3fmp_B 289 -----------VPDPN--VIKL--KREEETL-D--------------------------TIKQ----YYVLC-------- 314 (479)
T ss_dssp -----------SSSEE--EEEE--C-------------------------------------------------------
T ss_pred -----------cCCCe--EEec--cccccCc-C--------------------------CceE----EEEEe--------
Confidence 11111 1111 1000000 0 0000 00000
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
.....|...+..++...
T Consensus 315 ----------~~~~~~~~~l~~~~~~~----------------------------------------------------- 331 (479)
T 3fmp_B 315 ----------SSRDEKFQALCNLYGAI----------------------------------------------------- 331 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------CCHHHHHHHHHHHHhhc-----------------------------------------------------
Confidence 00011222222222211
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII 715 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi 715 (1001)
...++||||+....++.+...|...|+.+..++|+++..+|..+++.|.++... +|++|.+++.|||++.+++||+
T Consensus 332 -~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 332 -TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc---EEEEccccccCCccccCCEEEE
Confidence 112456999999999999999999999999999999999999999999986554 8999999999999999999999
Q ss_pred ecCCCCc------chhhhhhhhhhhccCcc
Q psy10448 716 YDSDWNP------HNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 716 ~D~~WNP------~~~iQriGRi~RiGq~~ 739 (1001)
||+||++ ..|+||+||++|.|+..
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G 437 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRG 437 (479)
T ss_dssp ------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCc
Confidence 9999876 57888888888877543
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.91 E-value=4.8e-24 Score=274.95 Aligned_cols=302 Identities=17% Similarity=0.207 Sum_probs=206.9
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 321 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~ 321 (1001)
.+++++|||.+++..+...+.++. ++|++.+||+|||.+++..+...... .+.+||+||. .|+.||.++|.+++
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHHHHHHHHHHHHHHh
Confidence 467899999999999887666555 79999999999999988666554433 2469999996 47789999999988
Q ss_pred CC--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc
Q psy10448 322 PD--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 322 p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l 399 (1001)
+. ..+..++|............ . ......+|+|+|++.+... +.-.++.+|||||||++
T Consensus 677 ~~~~i~v~~l~~~~~~~~~~~~~~----~------------l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 677 ANWPVRIEMISRFRSAKEQTQILA----E------------VAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp TTTTCCEEEESTTSCHHHHHHHHH----H------------HHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHH----H------------HhcCCCCEEEECHHHHhCC---ccccccceEEEechHhc
Confidence 64 45666665433221110000 0 1123578999999988653 33357899999999997
Q ss_pred CCcccHHHHHHhcccc-cceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeee
Q psy10448 400 KSNQSKFFKFLSGYSI-QNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRR 478 (1001)
Q Consensus 400 KN~~Sk~~~al~~l~~-~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR 478 (1001)
. ......+..+.. .+.++|||||..+.+.....-+ ....
T Consensus 738 g---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~----------------------------------~~~~--- 777 (1151)
T 2eyq_A 738 G---VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM----------------------------------RDLS--- 777 (1151)
T ss_dssp C---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTT----------------------------------SEEE---
T ss_pred C---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcC----------------------------------CCce---
Confidence 4 344455555543 5689999999865432211100 0000
Q ss_pred eHhHHhhcCCCceE---EEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCc
Q psy10448 479 LKADVLKNMPSKSE---FIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPV 555 (1001)
Q Consensus 479 ~K~dv~~~LP~k~e---~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~ 555 (1001)
++ ..|+... .......+.
T Consensus 778 ----~i-~~~~~~r~~i~~~~~~~~~------------------------------------------------------ 798 (1151)
T 2eyq_A 778 ----II-ATPPARRLAVKTFVREYDS------------------------------------------------------ 798 (1151)
T ss_dssp ----EC-CCCCCBCBCEEEEEEECCH------------------------------------------------------
T ss_pred ----EE-ecCCCCccccEEEEecCCH------------------------------------------------------
Confidence 00 1111110 011111110
Q ss_pred CCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccC
Q psy10448 556 QGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDI 635 (1001)
Q Consensus 556 ~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1001)
..+...++..+. .+
T Consensus 799 ----------------~~i~~~il~~l~-~g------------------------------------------------- 812 (1151)
T 2eyq_A 799 ----------------MVVREAILREIL-RG------------------------------------------------- 812 (1151)
T ss_dssp ----------------HHHHHHHHHHHT-TT-------------------------------------------------
T ss_pred ----------------HHHHHHHHHHHh-cC-------------------------------------------------
Confidence 011111222211 22
Q ss_pred CCCceeEEEeccHHHHHHHHHHHhhC--CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEE
Q psy10448 636 PGLKESIEFYNMTKMLDILEDYLDGE--GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713 (1001)
Q Consensus 636 ~~~~KvIIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~V 713 (1001)
.+++|||+....++.+.+.|... ++++..+||.++..+|++++++|.++... +|+||.++++|||++.+++|
T Consensus 813 ---~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~---VLVaT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 813 ---GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETGIDIPTANTI 886 (1151)
T ss_dssp ---CEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESSTTGGGSCCTTEEEE
T ss_pred ---CeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEECCcceeeecccCCcEE
Confidence 34559999999999999999887 88999999999999999999999986554 89999999999999999999
Q ss_pred EEecC-CCCcchhhhhhhhhhhccCcc
Q psy10448 714 IIYDS-DWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 714 Ii~D~-~WNP~~~iQriGRi~RiGq~~ 739 (1001)
|++++ .|++..+.||+||++|.|+..
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g 913 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQA 913 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCE
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCce
Confidence 99998 589998999999988888543
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.90 E-value=6.4e-24 Score=262.26 Aligned_cols=306 Identities=17% Similarity=0.241 Sum_probs=195.5
Q ss_pred CCCcccHHHHHHHHHHHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 321 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~ 321 (1001)
.+++|+++|.+++..+......+ .++|+..+||+|||++++..+......+ ..+||+||. .|..||.+++.+|+
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 56789999999999887665444 4799999999999999988877766544 358999995 67799999999998
Q ss_pred C--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc
Q psy10448 322 P--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 322 p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l 399 (1001)
+ +..+..++|............ . ......+|+|+|++.+... +.-.++.+|||||+|++
T Consensus 442 ~~~gi~v~~l~G~~~~~~r~~~~~----~------------l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 442 SKFNIHVALLIGATTPSEKEKIKS----G------------LRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp TCSSCCEEECCSSSCHHHHHHHHH----H------------HHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC
T ss_pred hhcCceEEEEeCCCCHHHHHHHHH----H------------HhcCCCCEEEECHHHHhhh---hhccCCceEEecccchh
Confidence 6 567888887654332211000 0 1123478999999988543 33446789999999997
Q ss_pred CCcccHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHccccHHHHHHHHHhhcCCeeeee
Q psy10448 400 KSNQSKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRR 478 (1001)
Q Consensus 400 KN~~Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~~~~~~~~~~~L~~lL~~~~lRR 478 (1001)
.... ...+... ...+.++|||||+.+.+...+ + .+ +..
T Consensus 503 g~~q---r~~l~~~~~~~~vL~mSATp~p~tl~~~~----~----------------g~-------------~~~----- 541 (780)
T 1gm5_A 503 GVKQ---REALMNKGKMVDTLVMSATPIPRSMALAF----Y----------------GD-------------LDV----- 541 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCCHHHHHHH----T----------------CC-------------SSC-----
T ss_pred hHHH---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH----h----------------CC-------------cce-----
Confidence 4221 1112222 346789999999764322110 0 00 000
Q ss_pred eHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHHHHHhcCCCCCchhhhcCCcCCC
Q psy10448 479 LKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGG 558 (1001)
Q Consensus 479 ~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~LRk~c~HP~L~~~~~~~~~~~~~ 558 (1001)
.++..+|+....+...-...
T Consensus 542 ---s~i~~~p~~r~~i~~~~~~~--------------------------------------------------------- 561 (780)
T 1gm5_A 542 ---TVIDEMPPGRKEVQTMLVPM--------------------------------------------------------- 561 (780)
T ss_dssp ---EEECCCCSSCCCCEECCCCS---------------------------------------------------------
T ss_pred ---eeeeccCCCCcceEEEEecc---------------------------------------------------------
Confidence 01112232111000000000
Q ss_pred hhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhhcccCCCcCccccccccccCCCC
Q psy10448 559 QYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGL 638 (1001)
Q Consensus 559 ~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1001)
.+...+...+.+....+.+++
T Consensus 562 -----------~~~~~l~~~i~~~l~~g~qvl------------------------------------------------ 582 (780)
T 1gm5_A 562 -----------DRVNEVYEFVRQEVMRGGQAF------------------------------------------------ 582 (780)
T ss_dssp -----------STHHHHHHHHHHHTTTSCCBC------------------------------------------------
T ss_pred -----------chHHHHHHHHHHHHhcCCcEE------------------------------------------------
Confidence 000011111211122333333
Q ss_pred ceeEEEeccH--------HHHHHHHHHHhh---CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccc
Q psy10448 639 KESIEFYNMT--------KMLDILEDYLDG---EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINL 707 (1001)
Q Consensus 639 ~KvIIFsq~~--------~~ldiL~~~L~~---~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL 707 (1001)
|||... ..++.+.+.|.. .++.+..+||+++..+|+.+++.|.++... +|++|.++++|||+
T Consensus 583 ----Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~---ILVaT~vie~GIDi 655 (780)
T 1gm5_A 583 ----IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD---ILVSTTVIEVGIDV 655 (780)
T ss_dssp ----CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS---BCCCSSCCCSCSCC
T ss_pred ----EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEECCCCCccccC
Confidence 333322 345666777776 478899999999999999999999987655 89999999999999
Q ss_pred ccCCEEEEecCC-CCcchhhhhhhhhhhccCcc
Q psy10448 708 ATADTVIIYDSD-WNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 708 ~~Ad~VIi~D~~-WNP~~~iQriGRi~RiGq~~ 739 (1001)
+.+++||++|++ |+...+.||+||++|.|+.+
T Consensus 656 P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g 688 (780)
T 1gm5_A 656 PRANVMVIENPERFGLAQLHQLRGRVGRGGQEA 688 (780)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCC
Confidence 999999999998 47888888888888877554
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.5e-21 Score=246.35 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=107.8
Q ss_pred cCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC
Q psy10448 244 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP 322 (1001)
Q Consensus 244 ~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p 322 (1001)
..+++|+|||.+++..+. .+.++|++.+||+|||+++...+...+..+ +.+||++| ..|..||.++|.++++
T Consensus 82 ~~~f~L~~~Q~eai~~l~----~g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHH----HTCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred hCCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC
Confidence 356789999999998876 567899999999999999876666555432 46999999 5888999999999886
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccC
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lK 400 (1001)
.+.++.|+... ....+|+|+|++.+.+.... ..-.++.+|||||||++.
T Consensus 155 --~vglltGd~~~---------------------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~ 205 (1010)
T 2xgj_A 155 --DVGLMTGDITI---------------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 205 (1010)
T ss_dssp --CEEEECSSCEE---------------------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred --CEEEEeCCCcc---------------------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhc
Confidence 56666664321 12457999999998765422 222468999999999997
Q ss_pred Ccc--cHHHHHHhccc-ccceEeeecCC
Q psy10448 401 SNQ--SKFFKFLSGYS-IQNKLLLTGTP 425 (1001)
Q Consensus 401 N~~--Sk~~~al~~l~-~~~rllLTGTP 425 (1001)
+.. ......+..+. ..+.++||||+
T Consensus 206 d~~rg~~~e~il~~l~~~~~il~LSATi 233 (1010)
T 2xgj_A 206 DKERGVVWEETIILLPDKVRYVFLSATI 233 (1010)
T ss_dssp CTTTHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred ccchhHHHHHHHHhcCCCCeEEEEcCCC
Confidence 653 22333444443 45679999995
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.6e-20 Score=237.62 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=106.2
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD 323 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~ 323 (1001)
..++|+|||.+++..+. .+.++|++.+||+|||+++...+...+..+ +.+||++| ..|..||.++|.+++.
T Consensus 181 ~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~g---~rvlvl~PtraLa~Q~~~~l~~~~~- 252 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG- 252 (1108)
T ss_dssp CSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHTS-
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEcCcHHHHHHHHHHHHHHhC-
Confidence 45789999999998764 778999999999999999887777665443 45999999 5688999999999886
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhh--cCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALL--GSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L--~~~~w~~VIiDEAH~lKN 401 (1001)
.+.++.|+.. .....+|+|+|++.+.+....- .-.++.+|||||||++..
T Consensus 253 -~VglltGd~~---------------------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 253 -DVGLMTGDIT---------------------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp -SEEEECSSCB---------------------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred -CccEEeCccc---------------------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 4555665432 1224679999999988754321 112578999999999965
Q ss_pred cc--cHHHHHHhccc-ccceEeeecCC
Q psy10448 402 NQ--SKFFKFLSGYS-IQNKLLLTGTP 425 (1001)
Q Consensus 402 ~~--Sk~~~al~~l~-~~~rllLTGTP 425 (1001)
.. ......+..+. ....++||||+
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCC
Confidence 42 22333344443 45679999993
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.84 E-value=5.1e-20 Score=228.01 Aligned_cols=156 Identities=20% Similarity=0.191 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHCC-CCe
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAP-DFY 325 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-~~~ 325 (1001)
+|+|+|.+++..+. .+.++|++.+||+|||+++...+...... .+.+|+++|.. ++.||.++++++.+ +..
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 79999999998754 68899999999999999997666554443 34699999954 88999999976654 567
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhc--CCceeEEEEcCccccCCc-
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLG--SIEWAVLVVDEAHRLKSN- 402 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~--~~~w~~VIiDEAH~lKN~- 402 (1001)
+....|+..... ......+|+|+|++.+......-. -..+.+|||||+|.+...
T Consensus 98 v~~~~G~~~~~~-----------------------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 98 IGISTGDYESRD-----------------------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp EEEECSSCBCCS-----------------------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred EEEEeCCCCcch-----------------------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 777777542210 112367899999999876543211 125789999999998652
Q ss_pred -ccHHHHHHhcc----cccceEeeecCCCCCCHHHHHH
Q psy10448 403 -QSKFFKFLSGY----SIQNKLLLTGTPLQNNLEELFH 435 (1001)
Q Consensus 403 -~Sk~~~al~~l----~~~~rllLTGTPlqN~l~EL~~ 435 (1001)
.......+..+ ...+.++||||+- +..++..
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~ 190 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE 190 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH
Confidence 22222222223 3456799999973 3555443
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.84 E-value=9.4e-20 Score=226.17 Aligned_cols=158 Identities=21% Similarity=0.201 Sum_probs=108.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHCC-CCe
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAP-DFY 325 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-~~~ 325 (1001)
.|+|+|.+++..+ ...+.++|++.+||+|||.++...+....... .+.+|+++|.. ++.||.+++.++.+ +..
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999652 23678999999999999999976665444322 34699999955 88999999966543 566
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhc--CCceeEEEEcCccccCCc-
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLG--SIEWAVLVVDEAHRLKSN- 402 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~--~~~w~~VIiDEAH~lKN~- 402 (1001)
+....|+..... ......+|+|+|++.+......-. -.++++|||||+|.+.+.
T Consensus 105 v~~~~G~~~~~~-----------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 105 VAMTSGDYDTDD-----------------------AWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp EEECCSCSSSCC-----------------------GGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred EEEEeCCCCCch-----------------------hhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 766666432110 112267899999998876543211 235789999999998642
Q ss_pred -ccHHHHHHhcccccceEeeecCCCCCCHHHHHH
Q psy10448 403 -QSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFH 435 (1001)
Q Consensus 403 -~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~ 435 (1001)
...+...+..++..+.++|||||- |..++..
T Consensus 162 ~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~ 193 (715)
T 2va8_A 162 RGPVVESVTIRAKRRNLLALSATIS--NYKQIAK 193 (715)
T ss_dssp THHHHHHHHHHHHTSEEEEEESCCT--THHHHHH
T ss_pred cchHHHHHHHhcccCcEEEEcCCCC--CHHHHHH
Confidence 222333344455677899999984 2444443
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.84 E-value=3.9e-19 Score=226.10 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=112.2
Q ss_pred CCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHH
Q psy10448 239 PPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREF 317 (1001)
Q Consensus 239 P~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~ 317 (1001)
|.+....+++|+|+|.+++..+. .+.++|++.+||+|||++++..+..+...+ +.+||++| .+|+.||.+++
T Consensus 30 ~~~~~~~~f~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 30 PNPARSWPFELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp SSCSCCCSSCCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHH
T ss_pred HhHHHhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHH
Confidence 33333467889999999997765 678899999999999998766665554432 45899999 67889999999
Q ss_pred HHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcC
Q psy10448 318 ETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDE 395 (1001)
Q Consensus 318 ~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDE 395 (1001)
.+++++..+..++|+... ....+|+|+|++.+.+.... .....+.+|||||
T Consensus 103 ~~~~~~~~v~~l~G~~~~---------------------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDE 155 (997)
T 4a4z_A 103 KETFDDVNIGLITGDVQI---------------------------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDE 155 (997)
T ss_dssp HTTC--CCEEEECSSCEE---------------------------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECC
T ss_pred HHHcCCCeEEEEeCCCcc---------------------------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEEC
Confidence 998888888888875421 12357999999999775432 1224689999999
Q ss_pred ccccCCc--ccHHHHHHhccc-ccceEeeecCCC
Q psy10448 396 AHRLKSN--QSKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 396 AH~lKN~--~Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
||++.+. .......+..+. ....++|||||-
T Consensus 156 aH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 156 VHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp TTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT
T ss_pred cccccccchHHHHHHHHHhcccCCCEEEEcCCCC
Confidence 9998653 333444555554 356699999973
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.84 E-value=8.6e-20 Score=226.64 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=107.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHH-HHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC-CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLY-SLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP-DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~-~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p-~~ 324 (1001)
.|+|+|.+++..+ ...+.++|++.+||+|||+++...+. .+... .+.+|+|+| ..++.||.+++.++.+ +.
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 7999999999651 23578899999999999999854444 44433 246999999 5888999999976653 56
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhc--CCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLG--SIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~--~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..++|+..... ......+|+|+|++.+......-. -.++.+|||||+|.+...
T Consensus 97 ~v~~~~G~~~~~~-----------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 97 RVAMATGDYDSKD-----------------------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp CEEEECSCSSCCC-----------------------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred EEEEecCCCCccc-----------------------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCC
Confidence 7777777432110 012357899999999876543211 235789999999998642
Q ss_pred --ccHHHHHHhccc-ccceEeeecCCCCCCHHHHHH
Q psy10448 403 --QSKFFKFLSGYS-IQNKLLLTGTPLQNNLEELFH 435 (1001)
Q Consensus 403 --~Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL~~ 435 (1001)
...+...+..++ ..+.++||||+- +..++..
T Consensus 154 ~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~ 187 (720)
T 2zj8_A 154 DRGATLEVILAHMLGKAQIIGLSATIG--NPEELAE 187 (720)
T ss_dssp TTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHH
T ss_pred cccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHH
Confidence 223333333343 467799999973 2444433
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.83 E-value=1.2e-19 Score=229.69 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=106.4
Q ss_pred CcccHHHHHHHHHHHHhhc----------CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHH
Q psy10448 247 MQLHAYQLEGINWLRYSWG----------QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWER 315 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~----------~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~ 315 (1001)
..|+|||.+|+.+++.... .+.+|++.+.||+|||++++.++ .++........+||||| ..|..||.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 5799999999999876432 24689999999999999997766 44433333346999999 778899999
Q ss_pred HHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhh----cCCceeEE
Q psy10448 316 EFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALL----GSIEWAVL 391 (1001)
Q Consensus 316 E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L----~~~~w~~V 391 (1001)
+|.+|.+.. + .+.......... ......+|+|||++.+....... ....+.+|
T Consensus 349 ~f~~f~~~~---v-~~~~s~~~l~~~-------------------L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lv 405 (1038)
T 2w00_A 349 EYQRFSPDS---V-NGSENTAGLKRN-------------------LDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVF 405 (1038)
T ss_dssp HHHTTSTTC---S-SSSCCCHHHHHH-------------------HHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEE
T ss_pred HHHHhcccc---c-ccccCHHHHHHH-------------------hcCCCCCEEEEEHHHHHHHHhcccchhccccccEE
Confidence 999987641 1 111111111000 00124679999999998754321 11257899
Q ss_pred EEcCccccCCcccHHHHHH-hcccccceEeeecCCCCC
Q psy10448 392 VVDEAHRLKSNQSKFFKFL-SGYSIQNKLLLTGTPLQN 428 (1001)
Q Consensus 392 IiDEAH~lKN~~Sk~~~al-~~l~~~~rllLTGTPlqN 428 (1001)
|+||||+... ...++.+ ..++..++++|||||...
T Consensus 406 IiDEAHrs~~--~~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 406 IFDECHRSQF--GEAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp EEESCCTTHH--HHHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred EEEccchhcc--hHHHHHHHHhCCcccEEEEeCCcccc
Confidence 9999999753 2234444 446667899999999863
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.81 E-value=1.3e-18 Score=223.19 Aligned_cols=359 Identities=15% Similarity=0.165 Sum_probs=229.4
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC-C
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA-P 322 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~-p 322 (1001)
.+++|.|+|.+++..+. .+.++|+...+|+|||..++..+...... .+.+|||+| ..|+.|+.+.|.+++ .
T Consensus 75 ~gf~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~~---~~~~Lil~PtreLa~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQKLADE 147 (1104)
T ss_dssp SSSCCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHHTTSCT
T ss_pred cCCCCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCeEEEEechHHHHHHHHHHHHHhhCC
Confidence 46689999999997665 57789999999999999776666555422 345899999 567799999999976 3
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
+..+..++|............. .....++|+|+|++.+......+...++.+|||||||.+...
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~----------------l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~ 211 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKS----------------FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKA 211 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHH----------------HHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTS
T ss_pred CCeEEEEeCCCCHHHHHHHHHH----------------HhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccc
Confidence 5688888886544111000000 011247899999999987766666668899999999986431
Q ss_pred c-------------cH-HHHHHhcc------------cccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHHHHHc
Q psy10448 403 Q-------------SK-FFKFLSGY------------SIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFA 456 (1001)
Q Consensus 403 ~-------------Sk-~~~al~~l------------~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~~~f~ 456 (1001)
. .. ....+..+ .....+++||||....+.+.+ ..
T Consensus 212 ~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~-----------------~~--- 271 (1104)
T 4ddu_A 212 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL-----------------FR--- 271 (1104)
T ss_dssp SHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH-----------------HH---
T ss_pred cccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH-----------------hh---
Confidence 1 11 22333322 234679999998665533211 00
Q ss_pred cccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHHHHHH
Q psy10448 457 DISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDL 536 (1001)
Q Consensus 457 ~~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~l~~L 536 (1001)
..+. +.+.. ...+........+..
T Consensus 272 ------------~~l~-i~v~~------~~~~~~~i~~~~~~~------------------------------------- 295 (1104)
T 4ddu_A 272 ------------DLLN-FTVGR------LVSVARNITHVRISS------------------------------------- 295 (1104)
T ss_dssp ------------HHTC-CCCCB------CCCCCCCEEEEEESC-------------------------------------
T ss_pred ------------ccee-EEecc------CCCCcCCceeEEEec-------------------------------------
Confidence 0000 00000 000000000000000
Q ss_pred HHHhcCCCCCchhhhcCCcCCChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhcccccccCCccchhh
Q psy10448 537 KKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLV 616 (1001)
Q Consensus 537 Rk~c~HP~L~~~~~~~~~~~~~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~~~~~~~~~ 616 (1001)
.|...|..++.. .+.
T Consensus 296 ---------------------------------~k~~~L~~ll~~---~~~----------------------------- 310 (1104)
T 4ddu_A 296 ---------------------------------RSKEKLVELLEI---FRD----------------------------- 310 (1104)
T ss_dssp ---------------------------------CCHHHHHHHHHH---HCS-----------------------------
T ss_pred ---------------------------------CHHHHHHHHHHh---cCC-----------------------------
Confidence 122223333333 123
Q ss_pred cccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEE-EEEccCCHHHHHHHHHHhcCCCCCcEEEE
Q psy10448 617 KWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYE-RIDGNITGSMRQESIDRFNAPGASQFVFL 695 (1001)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~-ridG~~s~~eRq~~Id~Fn~~~~~~~v~L 695 (1001)
++|||++....++.+...|...|+++. .++|. |.+ ++.|.++... +|
T Consensus 311 -----------------------~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~---VL 358 (1104)
T 4ddu_A 311 -----------------------GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKIN---IL 358 (1104)
T ss_dssp -----------------------SEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCS---EE
T ss_pred -----------------------CEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCC---EE
Confidence 345999999999999999999999998 88882 555 9999987765 67
Q ss_pred Ee----cccccccccccc-CCEEEEecCCC---------CcchhhhhhhhhhhccCcccccccccc--------------
Q psy10448 696 LS----TRSGGLGINLAT-ADTVIIYDSDW---------NPHNDIQAFSRAHRIGQQNKYINLATA-------------- 747 (1001)
Q Consensus 696 lS----tragg~GINL~~-Ad~VIi~D~~W---------NP~~~iQriGRi~RiGq~~~~LNL~~A-------------- 747 (1001)
++ |.+++.|||++. +++||+||+|- +|..+.++.+++.|.-.+...=.+..|
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 77 999999999999 99999999997 899999988887776544210000000
Q ss_pred -------ceeEeecCCC-----CCcchhhHhhhhhhcCCC---CeEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q psy10448 748 -------DTVIIYDSDW-----NPHNDIQAFSRAHRIGQQ---NKVMIYRFVTRNSVEERVTQVAKRKMMLT 804 (1001)
Q Consensus 748 -------~~Vil~Dp~W-----NP~~d~QA~~RahRiGQ~---k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~ 804 (1001)
..+..-+-.| ++...+|+.||+.|.|.. +-+.|. ++ -|++++..+++++...
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~-~~----~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVI-FE----EDEEIFESLKTRLLLI 505 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEE-EC----CCHHHHHHHHHHHHHH
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEE-EE----ecHHHHHHHHHHHhhh
Confidence 0001112222 345789999999998764 444442 33 3567788777777644
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.78 E-value=3.3e-18 Score=219.44 Aligned_cols=156 Identities=16% Similarity=0.152 Sum_probs=107.8
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD 323 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~ 323 (1001)
.|+.+ |+|.+++.-+. .+.++|+..++|+|||+.++.++..+... ...+|||+| ..|+.|+.+.+.+++..
T Consensus 54 ~g~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~~---~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp TCSCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred cCCCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhhc---CCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 56678 99999997766 67889999999999998555555554432 345899999 56779999999998754
Q ss_pred --C----eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcc
Q psy10448 324 --F----YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 324 --~----~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH 397 (1001)
. .+..++|........... ......+|+|+|++.+......|. .+++|||||||
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~------------------~~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah 185 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFM------------------QNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDDVD 185 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHH------------------HSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHH
T ss_pred cCCCccceEEEEeCCCChhhHHHHH------------------hhccCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChh
Confidence 3 567777755433211100 011127899999999998766544 67899999999
Q ss_pred ccCCcccHHHHHHhcc------------cccceEeeecCCCCC
Q psy10448 398 RLKSNQSKFFKFLSGY------------SIQNKLLLTGTPLQN 428 (1001)
Q Consensus 398 ~lKN~~Sk~~~al~~l------------~~~~rllLTGTPlqN 428 (1001)
++-+........+..+ .....+++|||+-..
T Consensus 186 ~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 186 AILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp HHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred hhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 9876444444444333 123458888887543
No 46
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.76 E-value=1.9e-18 Score=189.89 Aligned_cols=163 Identities=13% Similarity=0.176 Sum_probs=119.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--D 323 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 323 (1001)
.+|+|||.+++.++.. +.++||+++||+|||+++++++......+ .+++|||||. +++.||.+++.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 5899999999998764 35689999999999999998887766543 3479999995 788999999999963 2
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcc
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQ 403 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~ 403 (1001)
..+..+.|...... ......+|+|+||+.+.+..... ...+++||+||||++.+.
T Consensus 186 ~~~~~~~~~~~~~~-----------------------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~- 240 (282)
T 1rif_A 186 AMIKKIGGGASKDD-----------------------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK- 240 (282)
T ss_dssp GGEEECSTTCSSTT-----------------------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH-
T ss_pred ceEEEEeCCCcchh-----------------------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc-
Confidence 34444433321100 11245689999999987764332 236899999999999853
Q ss_pred cHHHHHHhcc-cccceEeeecCCCCCCHHHHHHhhhccCC
Q psy10448 404 SKFFKFLSGY-SIQNKLLLTGTPLQNNLEELFHLLNFLTP 442 (1001)
Q Consensus 404 Sk~~~al~~l-~~~~rllLTGTPlqN~l~EL~~LL~fL~p 442 (1001)
.....+..+ ...++++|||||. |...+++.+..++.|
T Consensus 241 -~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 241 -SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp -HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred -cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 445556666 6788999999995 445677777766654
No 47
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.71 E-value=6.3e-17 Score=173.39 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=109.2
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCC
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 323 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 323 (1001)
.+.+|+|||.+++.++. .+.++|++++||+|||+++++++..+ .+++|||||. +++.||.+++.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 90 AEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCCCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 35789999999997654 45569999999999999999887654 4579999996 7889999999995 4
Q ss_pred Ce-EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCc
Q psy10448 324 FY-VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 324 ~~-vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.. +..+.|... ...+|+|+||+.+......+. ..|++|||||||++.+.
T Consensus 158 ~~~v~~~~g~~~-----------------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 158 EEYVGEFSGRIK-----------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp GGGEEEESSSCB-----------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTT
T ss_pred CCeEEEEeCCCC-----------------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCCh
Confidence 45 666665431 134799999999988776554 35999999999999765
Q ss_pred ccHHHHHHhcccccceEeeecCCCCCC
Q psy10448 403 QSKFFKFLSGYSIQNKLLLTGTPLQNN 429 (1001)
Q Consensus 403 ~Sk~~~al~~l~~~~rllLTGTPlqN~ 429 (1001)
. ..+.+..+...++++|||||.+++
T Consensus 208 ~--~~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 208 S--YVQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp T--HHHHHHTCCCSEEEEEEESCC---
T ss_pred H--HHHHHHhccCCEEEEEecCCCCCC
Confidence 3 334556667889999999998775
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.70 E-value=1.8e-16 Score=184.93 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=71.0
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE----
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII---- 715 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi---- 715 (1001)
++|||++....++.+...|...|+++..++|. +|+++++.|.++... +|++|.+.+.|||++ +++||.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEecCcc
Confidence 56699999999999999999999999999996 588899999987655 899999999999999 767554
Q ss_pred -------------ecCCCCcchhhhhhhhhhhcc
Q psy10448 716 -------------YDSDWNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 716 -------------~D~~WNP~~~iQriGRi~RiG 736 (1001)
+|.+.++..++||+||++|.|
T Consensus 245 ~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 278 (431)
T 2v6i_A 245 IKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP 278 (431)
T ss_dssp EEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ccceecccceeecccccCCHHHHHHhhhccCCCC
Confidence 455555555555555555544
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.70 E-value=3.4e-17 Score=192.16 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=74.4
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEec--
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD-- 717 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D-- 717 (1001)
++|||++....++.+...|...|+.+..++|.+ ++++++.|.++... +|++|.+++.|||++. ++||.||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEECCCc
Confidence 456999999999999999999999999999864 46799999987654 8999999999999999 9999998
Q ss_pred ------------------CCCCcchhhhhhhhhhhccC
Q psy10448 718 ------------------SDWNPHNDIQAFSRAHRIGQ 737 (1001)
Q Consensus 718 ------------------~~WNP~~~iQriGRi~RiGq 737 (1001)
.|.++..++||+||++|.|.
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 55555555555555555553
No 50
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.69 E-value=1e-17 Score=138.79 Aligned_cols=60 Identities=38% Similarity=0.787 Sum_probs=56.6
Q ss_pred hcCCCCCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHh
Q psy10448 132 RYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNK 191 (1001)
Q Consensus 132 ~~~~~~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~ 191 (1001)
.|||+|+|++|+|||+++...+|.++|||||+||||++||||.++.++|+++++|+.|+.
T Consensus 4 ~~~~~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 4 GSSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp CSSSCCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred ccccCCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 479999999999999999888899999999999999999999998789999999999975
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.68 E-value=2.1e-16 Score=184.72 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=68.9
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEE----
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVII---- 715 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi---- 715 (1001)
++|||++....++.+...|...|+++..++| ++|.++++.|.++... +|++|.+.+.|||++ +++||+
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~g~~ 250 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDCRTA 250 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeCCcc
Confidence 4569999999999999999999999999999 4688999999987655 899999999999999 999996
Q ss_pred ---------------ecCCCCcchhhhhhhhhhhcc
Q psy10448 716 ---------------YDSDWNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 716 ---------------~D~~WNP~~~iQriGRi~RiG 736 (1001)
||.|.++..++||+||++|.|
T Consensus 251 ~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 251 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ceeeecccccceeeccccccCHHHHHHhccccCCCC
Confidence 677777777777777776653
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.66 E-value=2e-15 Score=183.60 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccc--------cCCEE
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLA--------TADTV 713 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~--------~Ad~V 713 (1001)
||||......+.|...|...|+++..++|.....+|..+...|.. . .++|+|..+|.|+|+. ...+|
T Consensus 436 LVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~---g--~VlIATdmAgRG~DI~l~~~V~~~ggl~V 510 (844)
T 1tf5_A 436 LVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK---G--AVTIATNMAGRGTDIKLGEGVKELGGLAV 510 (844)
T ss_dssp EEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST---T--CEEEEETTSSTTCCCCCCTTSGGGTSEEE
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC---C--eEEEeCCccccCcCccccchhhhcCCcEE
Confidence 399999999999999999999999999999876666544444443 2 2799999999999999 67899
Q ss_pred EEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 714 IIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 714 Ii~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
|.||.|-++..|+||+||++|.|....
T Consensus 511 In~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 511 VGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp EESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred EEecCCCCHHHHHhhcCccccCCCCCe
Confidence 999999999999999999999998765
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.66 E-value=1.8e-14 Score=174.95 Aligned_cols=94 Identities=11% Similarity=-0.006 Sum_probs=80.9
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC-----------
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA----------- 710 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A----------- 710 (1001)
||||......+.|...|...|+++..++|.....++..+...|..+ .++|+|..+|.|+|+...
T Consensus 464 LVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G-----~VtIATnmAgRGtDI~l~~~~~~~~~~~~ 538 (922)
T 1nkt_A 464 LIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG-----GVTVATNMAGRGTDIVLGGNVDFLTDQRL 538 (922)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT-----CEEEEETTCSTTCCCCTTCCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----eEEEecchhhcCccccCCCCHHHHHHHHH
Confidence 3999999999999999999999999999997665555555666543 279999999999999864
Q ss_pred -----------------------------------------CEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 711 -----------------------------------------DTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 711 -----------------------------------------d~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
.+||.+|.|-++..+.||+||++|.|....
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~ 609 (922)
T 1nkt_A 539 RERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGE 609 (922)
T ss_dssp HHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEE
T ss_pred hhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCee
Confidence 499999999999999999999999997654
No 54
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.65 E-value=1.4e-16 Score=194.45 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=83.3
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+++..++|. +|+++++.|.++... +|++|.+++.|||++ +++||+++.
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEECCC
Confidence 356699999999999999999999999999993 799999999987655 899999999999999 999999766
Q ss_pred CCCcchhhhhhhhhhhccCcccccccccc-ceeEeecCCCCCcchhhHhhhhhhc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQNKYINLATA-DTVIIYDSDWNPHNDIQAFSRAHRI 772 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~~~LNL~~A-~~Vil~Dp~WNP~~d~QA~~RahRi 772 (1001)
..||. +....- ...+++|+..+++...|..||++|.
T Consensus 483 ~~~p~------------------vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 483 SVKPT------------------ILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp ECCEE------------------EECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred cccce------------------eeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 66554 100000 1223355666666667777777776
No 55
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=1e-15 Score=155.70 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=88.5
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|.++++|+|++.+++||+||+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATNLFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESSCCSTTCCGGGCSEEEESSC
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECCchhcCcchhhCCEEEEECC
Confidence 4567999999999999999999999999999999999999999999987655 7999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~ 738 (1001)
|||+..++||+||++|.|+.
T Consensus 109 p~~~~~~~qr~GR~~R~g~~ 128 (172)
T 1t5i_A 109 PEDSDTYLHRVARAGRFGTK 128 (172)
T ss_dssp CSSHHHHHHHHHHHTGGGCC
T ss_pred CCCHHHHHHHhcccccCCCC
Confidence 99999777777777777643
No 56
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.63 E-value=1.2e-15 Score=153.64 Aligned_cols=97 Identities=24% Similarity=0.410 Sum_probs=88.7
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....++.+...|...|+.+..++|+++..+|+.++++|+++... +|++|+++++|+|++.+++||+||+|
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gld~~~~~~Vi~~~~p 113 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATDVAARGIDIENISLVINYDLP 113 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECGGGTTTCCCSCCSEEEESSCC
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECChhhcCCchhcCCEEEEeCCC
Confidence 566999999999999999999999999999999999999999999987554 88999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCcc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~~ 739 (1001)
||+..++||+||++|.|+..
T Consensus 114 ~~~~~~~qr~GR~~R~g~~g 133 (163)
T 2hjv_A 114 LEKESYVHRTGRTGRAGNKG 133 (163)
T ss_dssp SSHHHHHHHTTTSSCTTCCE
T ss_pred CCHHHHHHhccccCcCCCCc
Confidence 99998888888877777543
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.63 E-value=1.4e-15 Score=178.84 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=89.3
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....++.+...|...|+.+..++|. +|+.+++.|.++... +|++|.+++.|||++. ++||.+...
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~G~~ 263 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDCRKS 263 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEECCEE
T ss_pred CEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEECCcc
Confidence 56699999999999999999999999999984 678899999887554 8999999999999999 999996555
Q ss_pred CCcchhhhhhhhhhhccCccccccccccceeEe-ecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 720 WNPHNDIQAFSRAHRIGQQNKYINLATADTVII-YDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil-~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
.+|. ++..+..++++ +|++.+++...|++||++|.|... -..|.|++..
T Consensus 264 ~~~~------------------~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~-G~~~~~~~~~ 313 (459)
T 2z83_A 264 VKPT------------------ILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV-GDEYHYGGAT 313 (459)
T ss_dssp CCEE------------------EECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC-CEEEEECSCC
T ss_pred cccc------------------cccccccccccccCCCCCHHHHHHhccccCCCCCCC-CeEEEEEccc
Confidence 5544 44445555555 666666667777777777766522 2344566665
No 58
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.62 E-value=1.2e-14 Score=176.44 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=83.4
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccC------------
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATA------------ 710 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~A------------ 710 (1001)
|||......+.|...|...|+++..++|.....+|..+...|..+ .++|+|..+|.|+|+...
T Consensus 446 Vft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G-----~VtIATnmAgRGtDI~l~gn~~~~~~~~~~ 520 (853)
T 2fsf_A 446 VGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA-----AVTIATNMAGRGTDIVLGGSWQAEVAALEN 520 (853)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT-----CEEEEESCCSSCSCCCTTCCHHHHHHHCSS
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----eEEEecccccCCcCccCCCchHhhhhhccc
Confidence 999999999999999999999999999998776666666777653 289999999999999863
Q ss_pred -------------------------CEEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 711 -------------------------DTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 711 -------------------------d~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
.+||.+|.|-++..+.||+||++|.|....
T Consensus 521 ~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 521 PTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred chhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 599999999999999999999999998765
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.62 E-value=3.1e-15 Score=181.45 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=96.8
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....++.+...|...|+++..++|. +|.++++.|.++... +|++|.+++.|||++ +++||+++..
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEECcce
Confidence 45699999999999999999999999999984 688899999887554 899999999999997 9999777766
Q ss_pred CCcchhhhhhhhhhhccCccccccccc-cceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCC-HHHHHHHHH
Q psy10448 720 WNPHNDIQAFSRAHRIGQQNKYINLAT-ADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNS-VEERVTQVA 797 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~~~~LNL~~-A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~T-iEE~I~~~~ 797 (1001)
++|. ++... ...++++|+.-+++...|++||++|.|..+.. +|.|++... -|...+...
T Consensus 429 ~~P~------------------~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~~~~~~d~~~l~~l 489 (618)
T 2whx_A 429 LKPV------------------ILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSGDPLKNDEDHAHWT 489 (618)
T ss_dssp EEEE------------------EECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECSCCCCCCTTCHHHH
T ss_pred ecce------------------ecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEccCCchhhHHHHHHH
Confidence 6654 11000 12346666666666777777777777653322 455666221 233344444
Q ss_pred HHHHHH
Q psy10448 798 KRKMML 803 (1001)
Q Consensus 798 ~~K~~l 803 (1001)
+.++.+
T Consensus 490 e~~i~l 495 (618)
T 2whx_A 490 EAKMLL 495 (618)
T ss_dssp HHHHHH
T ss_pred HhHhcc
Confidence 444433
No 60
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.61 E-value=5.4e-15 Score=153.98 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=114.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC---CCCCcEEEEeCc-chHHHHHHHHHHHCCC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAPL-STIINWEREFETWAPD 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~---~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 323 (1001)
.|+|||.+++..+. ++.++++..+||+|||++++..+...+... .....+||+||. .++.||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 79999999998876 678899999999999999776665554321 123459999996 8889999999999988
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN 401 (1001)
..+..+.|.......... .....+|+|+|++.+...... +....+++||+||||++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEA--------------------LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp SCEEEECSSSCSHHHHHH--------------------HHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred ceEEEEECCCChHHHHHH--------------------hhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 888888776543222111 112467999999998765432 3334688999999999853
Q ss_pred c--ccHHHHHHhccc-ccceEeeecCCCCCCHHHH
Q psy10448 402 N--QSKFFKFLSGYS-IQNKLLLTGTPLQNNLEEL 433 (1001)
Q Consensus 402 ~--~Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL 433 (1001)
. .......+..+. ....+++||||- +++.++
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCC-HHHHHH
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecC-HHHHHH
Confidence 3 334444455554 445799999983 334443
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.61 E-value=7.9e-15 Score=176.85 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=70.1
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEE---
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVI--- 714 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VI--- 714 (1001)
..++|||++....++.+.+.|...|+++..++|+++.++ |..+.. .+|++|.+++.|||+. ++.||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEECC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEecC
Confidence 357789999999999999999999999999999999764 333322 5999999999999996 99988
Q ss_pred -------Eec-----------CCCCcchhhhhhhhhhh
Q psy10448 715 -------IYD-----------SDWNPHNDIQAFSRAHR 734 (1001)
Q Consensus 715 -------i~D-----------~~WNP~~~iQriGRi~R 734 (1001)
+|| .|-++..|+||+||++|
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 455 56666667777776666
No 62
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=157.17 Aligned_cols=97 Identities=25% Similarity=0.432 Sum_probs=74.5
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|+++++|+|++.+++||+||+
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDL 123 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEEC------CCCSBSEEEESSC
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEcChhhcCCCcccCCEEEEeCC
Confidence 4567999999999999999999999999999999999999999999987655 8999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~ 738 (1001)
|||+..++||+||++|.|+.
T Consensus 124 p~s~~~~~Qr~GR~~R~g~~ 143 (185)
T 2jgn_A 124 PSDIEEYVHRIGRTGRVGNL 143 (185)
T ss_dssp CSSHHHHHHHHTTBCCTTSC
T ss_pred CCCHHHHHHHccccCCCCCC
Confidence 99999887777777777643
No 63
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.59 E-value=1.1e-14 Score=153.62 Aligned_cols=162 Identities=13% Similarity=0.137 Sum_probs=113.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHC---CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---PD 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p~ 323 (1001)
.|+|||.+++..+. .+.++|+..+||+|||++++..+............+|||||. .++.||.+++.++. ++
T Consensus 36 ~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 49999999998776 567899999999999999888777665443333469999995 78899999999986 46
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN 401 (1001)
..+..+.|........... .....+|+|+|++.+...... +....+++||+||||++..
T Consensus 112 ~~v~~~~g~~~~~~~~~~~-------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVL-------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp CCEEEESCCSCHHHHHHHH-------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred ceEEEEeCCCChHHHHHHH-------------------hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 7888888765433222110 012357999999998765432 2334688999999999854
Q ss_pred c-c--cHHHHHHhccc-ccceEeeecCCCCCCHHHH
Q psy10448 402 N-Q--SKFFKFLSGYS-IQNKLLLTGTPLQNNLEEL 433 (1001)
Q Consensus 402 ~-~--Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL 433 (1001)
. . ......+..+. ....+++||||- +.+.++
T Consensus 173 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 207 (220)
T 1t6n_A 173 QLDMRRDVQEIFRMTPHEKQVMMFSATLS-KEIRPV 207 (220)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESCCC-TTTHHH
T ss_pred ccCcHHHHHHHHHhCCCcCeEEEEEeecC-HHHHHH
Confidence 2 1 22333334443 456799999984 344444
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.59 E-value=3.5e-15 Score=150.45 Aligned_cols=97 Identities=23% Similarity=0.360 Sum_probs=85.7
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|+|++.+++||+||+
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGTTTCCCCSCSEEEESSC
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhhcCCCcccCCEEEEeCC
Confidence 4566999999999999999999999999999999999999999999987654 7899999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~ 738 (1001)
||++..++||+||++|.|+.
T Consensus 108 p~~~~~~~qr~GR~gR~g~~ 127 (165)
T 1fuk_A 108 PANKENYIHRIGRGGRFGRK 127 (165)
T ss_dssp CSSGGGGGGSSCSCC-----
T ss_pred CCCHHHHHHHhcccccCCCC
Confidence 99999888888887777643
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.59 E-value=4.3e-14 Score=172.22 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=81.0
Q ss_pred EEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC---
Q psy10448 642 IEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS--- 718 (1001)
Q Consensus 642 IIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~--- 718 (1001)
|||+.....++.+...|...|+.+..++|+++.++|..+++.|++++. ...+|++|.+++.|||+ .+++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 588888999999999999999999999999999999999999998322 22489999999999999 9999999998
Q ss_pred -----------CCCcchhhhhhhhhhhccCc
Q psy10448 719 -----------DWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 719 -----------~WNP~~~iQriGRi~RiGq~ 738 (1001)
|+++..++||+||++|.|..
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 56667667777666666643
No 66
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=157.43 Aligned_cols=132 Identities=17% Similarity=0.305 Sum_probs=92.6
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC---CCCCcEEEEeCc-chHHH-HHHHHHHH
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAPL-STIIN-WEREFETW 320 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~---~~~~p~LIV~P~-sll~q-W~~E~~k~ 320 (1001)
..+|+|||.+++..+. .+.++|+..+||+|||++++..+..++... ...+++|||||. .++.| |.+++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 5689999999998776 567899999999999999998887665432 224569999996 66788 99999998
Q ss_pred CC-CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--------hcCCceeEE
Q psy10448 321 AP-DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--------LGSIEWAVL 391 (1001)
Q Consensus 321 ~p-~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--------L~~~~w~~V 391 (1001)
.+ ...+..+.|......... ......+|+|+||+.+...... +....|++|
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~--------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~i 166 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFP--------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 166 (216)
T ss_dssp HTTTSCEEECCC---CCCCHH--------------------HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEE
T ss_pred hccCceEEEEeCCcccchhHH--------------------hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEE
Confidence 75 466777666543221100 0112468999999999876543 233568999
Q ss_pred EEcCccccCC
Q psy10448 392 VVDEAHRLKS 401 (1001)
Q Consensus 392 IiDEAH~lKN 401 (1001)
||||||++..
T Consensus 167 IiDEah~~~~ 176 (216)
T 3b6e_A 167 IIDECHHTNK 176 (216)
T ss_dssp EETTC-----
T ss_pred EEECchhhcc
Confidence 9999999854
No 67
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.58 E-value=4.9e-14 Score=172.52 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=86.6
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC-
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS- 718 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~- 718 (1001)
++|||+....+.+.|..+|...|+++..++|+++..+|..+++.|..+... +|++|.++++|+|++.+++||++|.
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccChhhcCccCCCCCEEEEeCCc
Confidence 344999999999999999999999999999999999999999999886554 8999999999999999999999998
Q ss_pred ----CCCcchhhhhhhhhhhcc
Q psy10448 719 ----DWNPHNDIQAFSRAHRIG 736 (1001)
Q Consensus 719 ----~WNP~~~iQriGRi~RiG 736 (1001)
++++..++||+||++|.|
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST
T ss_pred ccCCCCCHHHHHHHHCccCcCC
Confidence 889999999999888865
No 68
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=155.32 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=85.5
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSD 719 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~ 719 (1001)
++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|+++++|+|++.+++||+||+|
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~~~~~Gldi~~v~~VI~~d~p 132 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATDVASKGLDFPAIQHVINYDMP 132 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECHHHHTTCCCCCCSEEEESSCC
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcCchhcCCCcccCCEEEEeCCC
Confidence 567999999999999999999999999999999999999999999986554 89999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhccCc
Q psy10448 720 WNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 720 WNP~~~iQriGRi~RiGq~ 738 (1001)
||+..++||+||++|.|+.
T Consensus 133 ~~~~~~~qr~GR~gR~g~~ 151 (191)
T 2p6n_A 133 EEIENYVHRIGRTGCSGNT 151 (191)
T ss_dssp SSHHHHHHHHTTSCC---C
T ss_pred CCHHHHHHHhCccccCCCC
Confidence 9999777777777666643
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.57 E-value=1.7e-14 Score=152.16 Aligned_cols=162 Identities=16% Similarity=0.111 Sum_probs=113.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC---
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--- 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--- 322 (1001)
.+++|||.+++..+. .+.++|+..+||+|||++++..+............+|||||. .++.||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 368999999998876 457899999999999998776665554433334469999995 788999999999864
Q ss_pred ---CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCcc
Q psy10448 323 ---DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAH 397 (1001)
Q Consensus 323 ---~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH 397 (1001)
...+..+.|......... ......+|+|+|++.+...... +....+.+||+||||
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~--------------------~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALE--------------------KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTC--------------------CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred cccceEEEEEeCCCCHHHHHH--------------------HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 456666666554332211 1123578999999998865432 223457899999999
Q ss_pred ccCCc--ccHHHHHHhccc-ccceEeeecCCCCCCHHHH
Q psy10448 398 RLKSN--QSKFFKFLSGYS-IQNKLLLTGTPLQNNLEEL 433 (1001)
Q Consensus 398 ~lKN~--~Sk~~~al~~l~-~~~rllLTGTPlqN~l~EL 433 (1001)
++.+. .......+..+. ....+++|||+ .+.+.++
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 98633 234445555554 34679999997 4444443
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.57 E-value=8.8e-14 Score=184.82 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=105.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHH-HCC--C
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFET-WAP--D 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k-~~p--~ 323 (1001)
.+.|.|.+++.-+ +..+.+++++.+||.|||+.+...+...+.... .+.+|+|+| .+|+.|=.+++.+ +.+ +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 4789999999655 357788999999999999998776666555443 334899999 6677776666644 332 5
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcC----CceeEEEEcCcccc
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGS----IEWAVLVVDEAHRL 399 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~----~~w~~VIiDEAH~l 399 (1001)
..|..+.|+....... ..+.+|+|||++.+......... .+..+||+||+|.+
T Consensus 1002 ~~V~~ltGd~~~~~~~-----------------------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l 1058 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKL-----------------------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI 1058 (1724)
T ss_dssp CCEEECCSCHHHHHHH-----------------------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG
T ss_pred CEEEEEECCCCcchhh-----------------------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhc
Confidence 6777788865432211 12467999999987543322111 13579999999999
Q ss_pred CCcccHHHHH-Hh-------ccc-ccceEeeecCCCCCCHHHHHHhh
Q psy10448 400 KSNQSKFFKF-LS-------GYS-IQNKLLLTGTPLQNNLEELFHLL 437 (1001)
Q Consensus 400 KN~~Sk~~~a-l~-------~l~-~~~rllLTGTPlqN~l~EL~~LL 437 (1001)
.......... +. .+. ..+.++||||- .|..|+...|
T Consensus 1059 ~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL 1103 (1724)
T 4f92_B 1059 GGENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWL 1103 (1724)
T ss_dssp GSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHh
Confidence 7543332222 11 122 23568999994 3566665444
No 71
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=2.7e-14 Score=148.64 Aligned_cols=155 Identities=16% Similarity=0.092 Sum_probs=110.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC---C
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP---D 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p---~ 323 (1001)
+|+|||.+++..+. .+.++++..+||+|||+.++..+............+||||| ..++.||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 69999999998776 66889999999999999887666555433333446999999 5778999999998864 5
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCccccCC
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH~lKN 401 (1001)
..+..+.|.......... .....+|+|+|++.+..... .+....+.+||+||||++..
T Consensus 101 ~~~~~~~g~~~~~~~~~~--------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMR--------------------LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp CCEEEECSSSCHHHHHHH--------------------TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred ceEEEEeCCccHHHHHHh--------------------cCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 677777776554332211 12356899999999876543 22234678999999999865
Q ss_pred cc--cHHHHHHhccc-ccceEeeecCCC
Q psy10448 402 NQ--SKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 402 ~~--Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
.. ..+...+..+. ....+++|||+-
T Consensus 161 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 161 QDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp TTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred hCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 32 23334444443 456799999983
No 72
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.56 E-value=2.7e-14 Score=151.93 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=110.7
Q ss_pred CCC-cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC-
Q psy10448 245 TGM-QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA- 321 (1001)
Q Consensus 245 ~~~-~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~- 321 (1001)
.|+ .|+|||.+++..+. .+.++|+..+||+|||++++..+...+........+||||| ..++.||.+++.++.
T Consensus 42 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 117 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGI 117 (230)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 344 49999999998776 67889999999999999866555444332233446999999 478899999999986
Q ss_pred --CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCcc
Q psy10448 322 --PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 322 --p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH 397 (1001)
++..+..+.|......... .....+|+|+|++.+..... .+....+++||+||||
T Consensus 118 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 118 KMEGLECHVFIGGTPLSQDKT---------------------RLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 176 (230)
T ss_dssp TSTTCCEEEECTTSCHHHHHH---------------------HTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH
T ss_pred ccCCceEEEEeCCCCHHHHHH---------------------hccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch
Confidence 3677888887654332211 11246899999999977542 2223467899999999
Q ss_pred ccCCc---ccHHHHHHhccc-ccceEeeecCC
Q psy10448 398 RLKSN---QSKFFKFLSGYS-IQNKLLLTGTP 425 (1001)
Q Consensus 398 ~lKN~---~Sk~~~al~~l~-~~~rllLTGTP 425 (1001)
++-+. .......+..+. ....+++|||+
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 98443 333444455554 45679999996
No 73
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=149.98 Aligned_cols=118 Identities=16% Similarity=0.275 Sum_probs=93.2
Q ss_pred CCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEe
Q psy10448 637 GLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIY 716 (1001)
Q Consensus 637 ~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~ 716 (1001)
...++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|+|++.+++||+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~Gid~~~~~~Vi~~ 109 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVCARGIDVKQVTIVVNF 109 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSCCTTTCCTTEEEEEES
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecchhcCCCcccCCEEEEe
Confidence 356899999999999999999999999999999999999999999999987654 89999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHH
Q psy10448 717 DSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVE 790 (1001)
Q Consensus 717 D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiE 790 (1001)
|+||||. ..|++....|++||++|.|+. -.++.|++.+..+
T Consensus 110 d~p~~~~-------------------------------~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 110 DLPVKQG-------------------------------EEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDELP 150 (175)
T ss_dssp SCCC--C-------------------------------CSCCHHHHHHHHCBC----CC--EEEEEEECGGGHH
T ss_pred CCCCCcc-------------------------------ccCCHHHHHHHhcccccCCCC--ceEEEEEccchHH
Confidence 9997664 123444555666666666643 4556677777743
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.55 E-value=3.4e-14 Score=151.47 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=110.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC----CCCCcEEEEeCc-chHHHHHHHHHHHC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG----HCKGPFLVSAPL-STIINWEREFETWA 321 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~----~~~~p~LIV~P~-sll~qW~~E~~k~~ 321 (1001)
..|+|||.+++.++. .+.++|+..+||+|||++++..+...+... .....+|||||. .++.||.+++.++.
T Consensus 46 ~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 369999999998876 678899999999999999777655443221 123358999995 78899999999997
Q ss_pred CC--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEEcCc
Q psy10448 322 PD--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVVDEA 396 (1001)
Q Consensus 322 p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIiDEA 396 (1001)
.. ..+..++|......... .....+|+|+|++.+...... +....+++||+|||
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAE---------------------RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHH---------------------HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred CCCCeeEEEEECCCCHHHHHH---------------------hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 54 67777777654332211 112468999999999775433 33346889999999
Q ss_pred cccCCc--ccHHHHHHhccc-ccceEeeecCCC
Q psy10448 397 HRLKSN--QSKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 397 H~lKN~--~Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
|++.+. .......+..+. ....++||||+-
T Consensus 181 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 181 DRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 998643 344455555564 345799999973
No 75
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.54 E-value=2.3e-13 Score=180.83 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=103.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc-C-------CCCCcEEEEeC-cchHHHHHHHH
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-G-------HCKGPFLVSAP-LSTIINWEREF 317 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~-~-------~~~~p~LIV~P-~sll~qW~~E~ 317 (1001)
.+|.+.|..++.-+ +..+.|.+++.+||.|||+.|...+...+.. . ...+.+|+|+| .+|+.+=.++|
T Consensus 78 ~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 36889999988644 4678899999999999999987666554432 1 12345899999 67777777777
Q ss_pred HHHCC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH------hhhcCCcee
Q psy10448 318 ETWAP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV------ALLGSIEWA 389 (1001)
Q Consensus 318 ~k~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~------~~L~~~~w~ 389 (1001)
.+.+. ++.|..++|+..... ......+|+|||+|.+.... ..+. ...
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~-----------------------~~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~ 209 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK-----------------------EEISATQIIVCTPEKWDIITRKGGERTYTQ--LVR 209 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC-----------------------TTGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEE
T ss_pred HHHHhhCCCEEEEEECCCCCCc-----------------------cccCCCCEEEECHHHHHHHHcCCccchhhc--CcC
Confidence 66543 456777777543210 12235789999999875422 1222 367
Q ss_pred EEEEcCccccCCcccHHHH-----HHh---cc-cccceEeeecCCCCCCHHHHHH
Q psy10448 390 VLVVDEAHRLKSNQSKFFK-----FLS---GY-SIQNKLLLTGTPLQNNLEELFH 435 (1001)
Q Consensus 390 ~VIiDEAH~lKN~~Sk~~~-----al~---~l-~~~~rllLTGTPlqN~l~EL~~ 435 (1001)
+|||||+|.+.+....... .++ .. ..-+.++||||- .|++|+..
T Consensus 210 ~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~ 262 (1724)
T 4f92_B 210 LIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT 262 (1724)
T ss_dssp EEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH
T ss_pred EEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH
Confidence 9999999998653222222 111 12 233579999994 35666654
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.54 E-value=5.9e-14 Score=148.23 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=105.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
.|+|||.+++..+. .+.++|+..+||+|||++++..+...+........+||+||. .++.||.+++.+++. +.
T Consensus 36 ~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 69999999998776 667899999999999998655554444333334569999995 778999999999875 45
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccCCc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLKSN 402 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lKN~ 402 (1001)
.+..+.|........ ......+|+|+|++.+...... +....+.+||+||||++.+.
T Consensus 112 ~~~~~~g~~~~~~~~---------------------~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 170 (224)
T 1qde_A 112 KVHACIGGTSFVEDA---------------------EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS 170 (224)
T ss_dssp CEEEECC-------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT
T ss_pred eEEEEeCCcchHHHH---------------------hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhh
Confidence 666666654322111 1122378999999998765432 22345789999999997532
Q ss_pred --ccHHHHHHhccc-ccceEeeecCCC
Q psy10448 403 --QSKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 403 --~Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
...+...+..+. ....++||||+-
T Consensus 171 ~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 171 GFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp TCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred hhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 233444444443 345799999983
No 77
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.54 E-value=1.9e-14 Score=178.71 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=87.2
Q ss_pred ceeEEEeccHHHHHHHHHHHhh-----------CCCeEEEEEccCCHHHHHHHHHHhcCC--CCCcEEEEEecccccccc
Q psy10448 639 KESIEFYNMTKMLDILEDYLDG-----------EGYKYERIDGNITGSMRQESIDRFNAP--GASQFVFLLSTRSGGLGI 705 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~-----------~gi~~~ridG~~s~~eRq~~Id~Fn~~--~~~~~v~LlStragg~GI 705 (1001)
.++|||+.....++.+...|.. .++.+..++|+++.++|+.+++.|... ..+...+|++|.+++.||
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~Gi 383 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSL 383 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCc
Confidence 3566999999999999888874 588899999999999999999999711 123446999999999999
Q ss_pred ccccCCEEEEecC------------------CCCcchhhhhhhhhhhccCcccccccc
Q psy10448 706 NLATADTVIIYDS------------------DWNPHNDIQAFSRAHRIGQQNKYINLA 745 (1001)
Q Consensus 706 NL~~Ad~VIi~D~------------------~WNP~~~iQriGRi~RiGq~~~~LNL~ 745 (1001)
|++.+++||.++. +.+...++||+||++|.+ ...|+.|.
T Consensus 384 dIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~-~G~~~~l~ 440 (773)
T 2xau_A 384 TIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLY 440 (773)
T ss_dssp CCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSS-SEEEEESS
T ss_pred CcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCC-CCEEEEEe
Confidence 9999999999665 788899999999999983 33334443
No 78
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.54 E-value=4.5e-14 Score=152.28 Aligned_cols=155 Identities=21% Similarity=0.166 Sum_probs=111.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 324 (1001)
.++|||.+++..+. .++++|+..+||+|||++++..+...+........+||+||. .++.||.+++.+++. +.
T Consensus 65 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 79999999998876 678899999999999999777666554444444459999995 778999999999864 46
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEEcCccccCC
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIiDEAH~lKN 401 (1001)
.+..+.|.......... .....+|+|+|++.+...... +....+++||+||||++.+
T Consensus 141 ~~~~~~g~~~~~~~~~~--------------------~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLA--------------------LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp CEEEECTTSCHHHHHHH--------------------HHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred eEEEEECCCChHHHHHH--------------------hcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence 67777765443222110 112468999999999876543 2334578999999999854
Q ss_pred c--ccHHHHHHhccc-ccceEeeecCCC
Q psy10448 402 N--QSKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 402 ~--~Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
. ...+...+..+. ....+++|||+-
T Consensus 201 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 201 MDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp TTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred cChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 3 233444555554 456799999984
No 79
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.28 E-value=8.5e-16 Score=155.84 Aligned_cols=101 Identities=21% Similarity=0.362 Sum_probs=92.0
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|+|++.+++||+||+
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gid~~~~~~Vi~~~~ 107 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDVAARGIDIPDVSHVFNFDM 107 (170)
Confidence 4667999999999999999999999999999999999999999999986543 8999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCccccc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQNKYI 742 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~~~L 742 (1001)
|||+..++||+||++|.|+...++
T Consensus 108 p~~~~~~~qr~GR~~R~g~~g~~~ 131 (170)
T 2yjt_D 108 PRSGDTYLHRIGRTARAGRKGTAI 131 (170)
Confidence 999999999999988888765533
No 80
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.51 E-value=4e-14 Score=148.88 Aligned_cols=98 Identities=15% Similarity=0.231 Sum_probs=89.1
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++++|||++.+++||+||+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidi~~v~~Vi~~~~ 108 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATDVAARGLDIPQVDLVVHYRL 108 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECTTTTCSSSCCCBSEEEESSC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecChhhcCCCCccCcEEEECCC
Confidence 3556999999999999999999999999999999999999999999987554 8999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCcc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQN 739 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~ 739 (1001)
||++..++||+||++|.|+..
T Consensus 109 p~~~~~~~qr~GR~gR~g~~g 129 (212)
T 3eaq_A 109 PDRAEAYQHRSGRTGRAGRGG 129 (212)
T ss_dssp CSSHHHHHHHHTTBCCCC--B
T ss_pred CcCHHHHHHHhcccCCCCCCC
Confidence 999999999988888888543
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.51 E-value=1.5e-13 Score=148.22 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=108.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC---------CCCcEEEEeCc-chHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH---------CKGPFLVSAPL-STIINWEREF 317 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~---------~~~p~LIV~P~-sll~qW~~E~ 317 (1001)
.|+|||.+++..+. .+.++|+..+||+|||+.++..+...+.... ....+|||||. .++.||.+++
T Consensus 45 ~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 69999999998776 6788999999999999988776665544321 12359999995 7889999999
Q ss_pred HHHCC--CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEE
Q psy10448 318 ETWAP--DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVV 393 (1001)
Q Consensus 318 ~k~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIi 393 (1001)
.++.. ...+..+.|.......... .....+|+|+|++.+...... +....+.+||+
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIRE--------------------VQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHH--------------------HSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred HHHhccCCceEEEEECCCCHHHHHHH--------------------hCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 99874 3566666665543322211 122468999999999875432 22345789999
Q ss_pred cCccccCCc--ccHHHHHHhccc-----ccceEeeecCCC
Q psy10448 394 DEAHRLKSN--QSKFFKFLSGYS-----IQNKLLLTGTPL 426 (1001)
Q Consensus 394 DEAH~lKN~--~Sk~~~al~~l~-----~~~rllLTGTPl 426 (1001)
||||++.+. .......+..+. ....+++||||-
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 999997533 334444444332 345799999973
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.50 E-value=1.1e-13 Score=147.96 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=106.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC--CC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP--DF 324 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p--~~ 324 (1001)
.|+|||.+++..+. .+.++|+..+||+|||++++..+...+........+||||| ..++.||.+++.+++. ..
T Consensus 52 ~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 49999999998776 66789999999999999877666655433333446999999 4788999999999975 34
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh--hcCCceeEEEEcCccccC--
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL--LGSIEWAVLVVDEAHRLK-- 400 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~--L~~~~w~~VIiDEAH~lK-- 400 (1001)
.+..+.|.......... .....++|+|+|++.+...... +....+.+||+||||++.
T Consensus 128 ~~~~~~g~~~~~~~~~~-------------------l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 188 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQK-------------------LQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR 188 (237)
T ss_dssp CEEEECC--------------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT
T ss_pred eEEEEECCCchHHHHHH-------------------HhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc
Confidence 55555554432211100 1112368999999998765432 333457899999999974
Q ss_pred CcccHHHHHHhccc-ccceEeeecCCC
Q psy10448 401 SNQSKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 401 N~~Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
+....+...+..+. ....+++|||+-
T Consensus 189 ~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 189 GFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp TCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 33344555555554 345689999984
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.50 E-value=6.7e-13 Score=162.37 Aligned_cols=93 Identities=24% Similarity=0.220 Sum_probs=86.2
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC-
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS- 718 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~- 718 (1001)
++|||+......+.|..+|...|+++..++|.++..+|..+++.|..+... +|++|.+++.|+|++.+++||++|.
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred eEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecchhhCCcccCCCCEEEEeCcc
Confidence 445999999999999999999999999999999999999999999876554 8999999999999999999999998
Q ss_pred ----CCCcchhhhhhhhhhhc
Q psy10448 719 ----DWNPHNDIQAFSRAHRI 735 (1001)
Q Consensus 719 ----~WNP~~~iQriGRi~Ri 735 (1001)
++++..++||+||++|.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS
T ss_pred cccCCCCHHHHHHHhCcccCC
Confidence 88999999999998885
No 84
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.46 E-value=4.2e-12 Score=151.30 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=80.7
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccc--------cCC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLA--------TAD 711 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~--------~Ad 711 (1001)
++||||......+.|...|...|+++..++|.....+|..+...|..+ .++++|..+|.|+|+. ...
T Consensus 476 pVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g-----~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 476 PVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG-----MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT-----CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC-----eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 344999999999999999999999999999985544444444555442 2899999999999997 557
Q ss_pred EEEEecCCCCcchhhhhhhhhhhccCccc
Q psy10448 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNK 740 (1001)
Q Consensus 712 ~VIi~D~~WNP~~~iQriGRi~RiGq~~~ 740 (1001)
+||.+|.|-++..++||+||++|.|....
T Consensus 551 hVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 551 CIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred EEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 99999999999999999999999997654
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=139.79 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CCCCcEEEEeC-cchHHHHHHHHHHHCCC--
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAP-LSTIINWEREFETWAPD-- 323 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~-~~~~p~LIV~P-~sll~qW~~E~~k~~p~-- 323 (1001)
.++|||.+++..+. .+.++++..+||+|||+.++..+...+... .....+||||| ..++.||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 49999999998766 677899999999999999766655544332 22335899999 56889999999999753
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh----hcCCceeEEEEcCcccc
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL----LGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~----L~~~~w~~VIiDEAH~l 399 (1001)
..+..+.|......... ......++|+|+|++.+...... +.-..+.+||+||||++
T Consensus 127 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~ 187 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKFG-------------------PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187 (245)
T ss_dssp CCEECCCHHHHHHTTTS-------------------TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHH
T ss_pred ceEEEEecCccHHHHhh-------------------hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHh
Confidence 34444443322111000 01234678999999999765432 23345789999999998
Q ss_pred CCc-----ccHHHHHHhcc--cccceEeeecCC
Q psy10448 400 KSN-----QSKFFKFLSGY--SIQNKLLLTGTP 425 (1001)
Q Consensus 400 KN~-----~Sk~~~al~~l--~~~~rllLTGTP 425 (1001)
-.. ...+...+..+ .....++||||+
T Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred cccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 532 22233333333 234679999998
No 86
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.42 E-value=1.5e-12 Score=137.92 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC------CCCCcEEEEeC-cchHHHHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG------HCKGPFLVSAP-LSTIINWEREFETW 320 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~------~~~~p~LIV~P-~sll~qW~~E~~k~ 320 (1001)
+++|||.+++..+. .+.++|+..++|+|||+.++..+...+... .....+||||| ..++.||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 79999999998776 678899999999999998776555433211 12345899999 56789999999998
Q ss_pred C-CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCcc
Q psy10448 321 A-PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 321 ~-p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH 397 (1001)
. .+..+..+.|......... .....++|+|+|++.+..... .+....+.+||+||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 177 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIE--------------------DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD 177 (228)
T ss_dssp CCTTCCEEEECC------CHH--------------------HHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH
T ss_pred cccCceEEEEECCCChHHHHH--------------------HhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH
Confidence 5 4566666666543221111 011246899999999977432 2223457899999999
Q ss_pred ccCCc--ccHHHHHHhccc-ccceEeeecCC
Q psy10448 398 RLKSN--QSKFFKFLSGYS-IQNKLLLTGTP 425 (1001)
Q Consensus 398 ~lKN~--~Sk~~~al~~l~-~~~rllLTGTP 425 (1001)
++.+. .......+..+. ....+++|||.
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 178 KMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred HHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 97543 233444455554 34568999996
No 87
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=116.78 Aligned_cols=56 Identities=29% Similarity=0.656 Sum_probs=46.9
Q ss_pred CCCCceeeeEEEeeccc---CCC--cEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 135 IKPEWLIANRVINSKTL---RDG--STIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 135 ~~~~~~~~~ri~~~~~~---~~~--~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
++|+|++|+|||+++.. ..| .++|||||+||||++||||.++. + .++.|+.|+.+.
T Consensus 7 ~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~-l--~~~~I~~f~~r~ 67 (68)
T 2epb_A 7 GNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEED-V--DPAKVKEFESLQ 67 (68)
T ss_dssp SCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTT-S--CHHHHHHHHHHC
T ss_pred CCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchh-c--CHHHHHHHHHhh
Confidence 58999999999998742 235 68999999999999999999875 4 358899998654
No 88
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.41 E-value=4.7e-13 Score=147.97 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=86.4
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+.+... +|++|.+++.|||++.+++||+||+
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~va~~Gidi~~v~~VI~~d~ 105 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATDVAARGLDIPQVDLVVHYRM 105 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECSTTTCSTTCCCCSEEEESSC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEechhhcCccccceeEEEEcCC
Confidence 3556999999999999999999999999999999999999999999987654 8999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhhccCc
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQ 738 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~ 738 (1001)
||++..|+||+||++|.|+.
T Consensus 106 p~s~~~y~Qr~GRagR~g~~ 125 (300)
T 3i32_A 106 PDRAEAYQHRSGRTGRAGRG 125 (300)
T ss_dssp CSSTTHHHHHHTCCC-----
T ss_pred CCCHHHHHHHccCcCcCCCC
Confidence 99999999999988888754
No 89
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.35 E-value=6.5e-12 Score=134.47 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=106.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-----CCCCcEEEEeC-cchHHHHHHHHHHHC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-----HCKGPFLVSAP-LSTIINWEREFETWA 321 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~-----~~~~p~LIV~P-~sll~qW~~E~~k~~ 321 (1001)
.++|||.+++..+. .+.++|+..++|.|||+.++..+...+... .....+||||| ..++.||.+.+.++.
T Consensus 51 ~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 49999999998766 567899999999999999776665554432 12334899999 567899999988875
Q ss_pred --CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh--hhcCCceeEEEEcCcc
Q psy10448 322 --PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA--LLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 322 --p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~--~L~~~~w~~VIiDEAH 397 (1001)
.+..+..++|.......... .....+|+|+|++.+..... .+....+.+||+||||
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 186 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRD--------------------LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD 186 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHH--------------------HHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH
T ss_pred hhcCceEEEEECCCChHHHHHH--------------------hcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH
Confidence 35667777665443322211 11236899999999976543 2223457899999999
Q ss_pred ccCCc--ccHHHHHHhccc-ccceEeeecCC
Q psy10448 398 RLKSN--QSKFFKFLSGYS-IQNKLLLTGTP 425 (1001)
Q Consensus 398 ~lKN~--~Sk~~~al~~l~-~~~rllLTGTP 425 (1001)
++-.. .......+..+. ....+++|||+
T Consensus 187 ~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 187 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred HHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 97542 233444455553 34578999996
No 90
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.35 E-value=5.3e-12 Score=137.07 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=106.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC----CCCcEEEEeC-cchHHHHHHHHHHHCC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH----CKGPFLVSAP-LSTIINWEREFETWAP 322 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~----~~~p~LIV~P-~sll~qW~~E~~k~~p 322 (1001)
+|+|+|.+++..+. .++++|+..++|.|||+.++..+...+.... ....+||||| ..|+.||.+++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 49999999997765 4577999999999999997766655443311 2334899999 5788999999999875
Q ss_pred C--CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEEcCcc
Q psy10448 323 D--FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVVDEAH 397 (1001)
Q Consensus 323 ~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIiDEAH 397 (1001)
. ..+..+.|.......... .....+|+|+|++.+...... +.-..+.+|||||||
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQK--------------------LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHH--------------------HHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred hcCceEEEEECCCCHHHHHHH--------------------hcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 3 455556665433222111 112368999999998765432 223457899999999
Q ss_pred ccCCc--ccHHHHHHhccc-ccceEeeecCCC
Q psy10448 398 RLKSN--QSKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 398 ~lKN~--~Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
++-.. ...+...+..+. ....++||||+-
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 97542 233444444553 345799999984
No 91
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.30 E-value=3.3e-13 Score=137.47 Aligned_cols=100 Identities=26% Similarity=0.407 Sum_probs=71.4
Q ss_pred hhhhhHHHHHHHhhCCCCCCCCCCCCCCchHHHHHHhhhcCCCChhHHHHhhhhcCCCCCceeeeEEEeeccc--CCCcE
Q psy10448 79 VYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRHNINDEELEKKYYRYGIKPEWLIANRVINSKTL--RDGST 156 (1001)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~--~~~~~ 156 (1001)
+.++.+++||.+|+ ++. ||.....+.|+..... . +.+++.. +.++|++|+|||+++.. .+|..
T Consensus 85 ~~~~~kl~nf~kk~--~~~-~~~~~~~s~Ed~e~~~---~----~~e~~~~-----~~~e~~~VErIi~~r~~~~~~g~~ 149 (187)
T 2b2y_A 85 VRGMKKLDNYKKKD--QET-KRWLKNASPEDVEYYN---C----QQELTDD-----LHKQYQIVGRIIAHSNQKSAAGYP 149 (187)
T ss_dssp CBCHHHHHHHHHHH--HHH-HHHTSSCCHHHHHHHH---H----HHHHHHH-----HHHHTTSEEEEEEEEEEECTTSCE
T ss_pred hhhHHHHHHHHHhh--hcc-ccccccCCHHHHhhhh---h----hhhHHhh-----hhhhcceeEEEEEeeeecCCCCcE
Confidence 57789999999999 443 3333333333321110 0 1123333 35899999999999874 57889
Q ss_pred EEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 157 IYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 157 ~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
.|||||+||||++||||.++...+.++++|+.|+.+.
T Consensus 150 ~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R~ 186 (187)
T 2b2y_A 150 DYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK 186 (187)
T ss_dssp EEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhhc
Confidence 9999999999999999997754467889999998764
No 92
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.19 E-value=9.7e-11 Score=129.70 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=102.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC---C
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA---P 322 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~---p 322 (1001)
..+.|+|.+++..+.. ..+.++|+...+|+|||+..+..+............+||||| ..|..|+.+.+..+. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3689999999976641 123789999999999999876554444333222224899999 567789888888875 4
Q ss_pred CCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEEcCcccc
Q psy10448 323 DFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVVDEAHRL 399 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIiDEAH~l 399 (1001)
...+..+.|...... ......+|+|+|++.+...... +.-....+|||||||++
T Consensus 191 ~~~~~~~~~~~~~~~-----------------------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER-----------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp TCCEEEESTTCCCCT-----------------------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH
T ss_pred CcEEEEEeCCccHhh-----------------------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH
Confidence 566666665432110 1123568999999999776532 22335789999999997
Q ss_pred CCc---ccHHHHHHhccc-ccceEeeecCCC
Q psy10448 400 KSN---QSKFFKFLSGYS-IQNKLLLTGTPL 426 (1001)
Q Consensus 400 KN~---~Sk~~~al~~l~-~~~rllLTGTPl 426 (1001)
-.. .......+..+. ....+++|||+-
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp HHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred hhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 531 122223333343 345789999983
No 93
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.15 E-value=1.1e-11 Score=125.15 Aligned_cols=57 Identities=33% Similarity=0.611 Sum_probs=49.3
Q ss_pred CCCCceeeeEEEeecc----cCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHh
Q psy10448 135 IKPEWLIANRVINSKT----LRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNK 191 (1001)
Q Consensus 135 ~~~~~~~~~ri~~~~~----~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~ 191 (1001)
+.|+|++|+|||+++. ..+|..+|||||+||||++||||.+....+.++++|+.|..
T Consensus 116 ~~~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 176 (177)
T 2h1e_A 116 EFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQK 176 (177)
T ss_dssp HHHHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC
T ss_pred cccccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHh
Confidence 4589999999999997 46788999999999999999999987644568899999874
No 94
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.13 E-value=7.9e-09 Score=123.65 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=68.4
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccccccccc----CCEEEE
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT----ADTVII 715 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~----Ad~VIi 715 (1001)
.+|||......++.+...|.. +. ..+.|.. .+|.+++++|..++ ...|.+.+....+|||++. +..||+
T Consensus 386 ~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~EGiD~~~~~~~~~~Vii 458 (540)
T 2vl7_A 386 SVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKESEGVEFREKENLFESLVL 458 (540)
T ss_dssp EEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC--CEEEEEC---------------CEEEEEE
T ss_pred CEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCceecceecCCCcccccEEEE
Confidence 445999999999999888865 33 3445543 46899999998742 2233348899999999997 799999
Q ss_pred ecCCCCcchhhhhhhhh---hhccCccc-cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 716 YDSDWNPHNDIQAFSRA---HRIGQQNK-YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 716 ~D~~WNP~~~iQriGRi---~RiGq~~~-~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
+..|+-+.....-..|. .+.|...- -.-+..|- ..-.||+||+-|--...-|.+
T Consensus 459 ~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 459 AGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTA-----------IVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp ESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHH-----------HHHHHHHHHHCCSTTCCCEEE
T ss_pred ECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHH-----------HHHHHHhCCcccCCCccEEEE
Confidence 99986655333332333 23332211 00011110 156799999999877776654
No 95
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.86 E-value=4.4e-08 Score=119.12 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=94.5
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 320 (1001)
.|+.++|-|..|+--|. ++. |....+|.|||++++..+......+ ..++||||+.-+ .+|...+.++
T Consensus 76 lG~~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~L~aL~G---~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVALNALTG---KGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp TCCCCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHHHHHTTC---SCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred hCCCCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHHHHHHhC---CCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46788999999997664 443 8899999999998765553222222 248999997765 4477777777
Q ss_pred CCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhh----H-----hhhcCC---ce
Q psy10448 321 APDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITND----V-----ALLGSI---EW 388 (1001)
Q Consensus 321 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d----~-----~~L~~~---~w 388 (1001)
+ ++.+.+..|........ .....+|++.|...+.-| . ..+... ..
T Consensus 147 l-GLsv~~i~Gg~~~~~r~----------------------~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l 203 (997)
T 2ipc_A 147 L-GLSVGVIQHASTPAERR----------------------KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPL 203 (997)
T ss_dssp T-TCCEEECCTTCCHHHHH----------------------HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSS
T ss_pred c-CCeEEEEeCCCCHHHHH----------------------HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCc
Confidence 6 57777666654321111 112468999999988421 1 112223 57
Q ss_pred eEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHH
Q psy10448 389 AVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFH 435 (1001)
Q Consensus 389 ~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~ 435 (1001)
.++||||+|.+-.. .+..-+++|| |.... ..+|.
T Consensus 204 ~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY~ 237 (997)
T 2ipc_A 204 HYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDLYY 237 (997)
T ss_dssp CEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHHH
T ss_pred ceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHHH
Confidence 89999999965321 2233489999 88766 44443
No 96
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=98.79 E-value=3.5e-10 Score=98.86 Aligned_cols=64 Identities=22% Similarity=0.488 Sum_probs=52.1
Q ss_pred HHhhhhcCCCCCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHh
Q psy10448 127 EKKYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNK 191 (1001)
Q Consensus 127 ~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~ 191 (1001)
.+.+|..|..++...|++||+++...+|..+|||||+|.|++++|||.++. +.+++++|+.|+.
T Consensus 11 rE~~~~~~~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~n-l~~~~~li~~f~~ 74 (81)
T 4hae_A 11 RENLYFQGASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHH-LLHCEEFIDEFNG 74 (81)
T ss_dssp -CCEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGG-EEECCCCCCTTCS
T ss_pred CccccccCCCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHH-hhhhHHHHHHHHH
Confidence 456677788999999999999998788899999999999999999998764 4445556666653
No 97
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=98.76 E-value=4e-09 Score=90.80 Aligned_cols=55 Identities=20% Similarity=0.518 Sum_probs=47.3
Q ss_pred CceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 138 EWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 138 ~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
+...|++||+++..++|..+|||||+|.+++++|||.++. +.+.+..|..|+.+.
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~n-l~~~~~li~~f~~~~ 74 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQN-LFGAEKVLKKWKKRK 74 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGG-GTTTHHHHHHHHHHC
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHH-ccChHHHHHHHHHhh
Confidence 3468999999998888899999999999999999998774 667788999998653
No 98
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=98.75 E-value=6.3e-09 Score=90.60 Aligned_cols=56 Identities=27% Similarity=0.611 Sum_probs=48.2
Q ss_pred CceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhcc
Q psy10448 138 EWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKS 194 (1001)
Q Consensus 138 ~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~~ 194 (1001)
+...|++||+++...+|..+|||||+|++|+++|||.++. +..+++.|+.|..+..
T Consensus 12 ~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~-l~~~~~li~~f~~~~~ 67 (78)
T 2dnt_A 12 ELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQH-LVNCEEYIHDFNRRHT 67 (78)
T ss_dssp CSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTT-CTTCHHHHHHHHHHHS
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHH-HHhHHHHHHHHHhhhh
Confidence 3458999999998677889999999999999999999875 6577899999987653
No 99
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.1e-07 Score=101.01 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=90.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC--CCcEEEEeCcc-hHHHHHHHHHHHCCC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPLS-TIINWEREFETWAPD 323 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~--~~p~LIV~P~s-ll~qW~~E~~k~~p~ 323 (1001)
..++++|.+++..+. .+...++..++|+|||.+...++......... ...+++++|.. +..|..+.+......
T Consensus 60 ~p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 468899999998775 56789999999999997766555443322221 22478888954 446666677665421
Q ss_pred CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCcccc-CCc
Q psy10448 324 FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRL-KSN 402 (1001)
Q Consensus 324 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~l-KN~ 402 (1001)
. +....|.. ++ .. ........+|+|+|.+.+.+.... .-.++++||+||||+. -+.
T Consensus 136 ~-~~~~~g~~-----~~-----~~-----------~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 136 E-PGKSCGYS-----VR-----FE-----------SILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINT 192 (235)
T ss_dssp C-TTSSEEEE-----ET-----TE-----------EECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHH
T ss_pred c-cCceEEEe-----ec-----hh-----------hccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcch
Confidence 1 00000000 00 00 001123568999999988776543 2345789999999983 111
Q ss_pred cc---HHHHHHhcccccceEeeecCCCC
Q psy10448 403 QS---KFFKFLSGYSIQNKLLLTGTPLQ 427 (1001)
Q Consensus 403 ~S---k~~~al~~l~~~~rllLTGTPlq 427 (1001)
.. .+...+........+++|||+-.
T Consensus 193 ~~~~~~l~~i~~~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 193 DFLLVVLRDVVQAYPEVRIVLMSATIDT 220 (235)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEECSSCC
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCH
Confidence 11 11122222334567999999743
No 100
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.64 E-value=8.3e-08 Score=115.16 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=93.9
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCC--
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP-- 322 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p-- 322 (1001)
|+++||+|.+.+.-.......++.+++...||+|||+..+..+.. ...+++|++| ..+..||.+++.+...
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~ 74 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKR 74 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc
Confidence 357999999988766666668888999999999999988766554 1346999999 5678999999987642
Q ss_pred CCeEEEEeCCchhhhhhhcc------------ccccccccccC------------------CCCcc---ccCCCccccEE
Q psy10448 323 DFYVVTYVGDKDCRIVLRDH------------DISWEDTANRG------------------GKPCR---IRSSTVKFHVL 369 (1001)
Q Consensus 323 ~~~vv~y~g~~~~r~~i~~~------------e~~~~~~~~~~------------------~~~~~---~~~~~~~~dVv 369 (1001)
.+++++..|...- .+... -..|......+ ...+. .+......+||
T Consensus 75 ~~~~~~l~gr~~~--c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 75 NITFSFLVGKPSS--CLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp CCCEEECCCHHHH--CTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred CccEEEEcccccc--CcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 4566666553221 00000 00011000000 00000 01112356999
Q ss_pred EecHHHHHhhHhh--hc-CCceeEEEEcCccccCC
Q psy10448 370 LTSYELITNDVAL--LG-SIEWAVLVVDEAHRLKS 401 (1001)
Q Consensus 370 ItTYe~l~~d~~~--L~-~~~w~~VIiDEAH~lKN 401 (1001)
|+||..+..+... +. .....+|||||||++-+
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999999876422 11 12557899999999966
No 101
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=98.59 E-value=4.6e-08 Score=81.74 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=42.8
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
..|++||+++. ..|..+|||||+|.+++++|||.++. +.+ .+.|+.|..+.
T Consensus 11 y~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~~-l~~-~~li~~f~~~~ 61 (64)
T 2dnv_A 11 FAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEEN-ILD-ARLLAAFESGP 61 (64)
T ss_dssp CCCCCEEEEEE-SSSSEEEEECCSSCCCSSCCEEETTT-CCC-HHHHHHHHCCT
T ss_pred EEEEEEEEEEE-eCCcEEEEEEECCCCcccCCccCHhH-CCC-HHHHHHHHHHc
Confidence 38999999986 46789999999999999999999875 444 47899998644
No 102
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.53 E-value=3.1e-08 Score=84.40 Aligned_cols=55 Identities=22% Similarity=0.569 Sum_probs=46.7
Q ss_pred CceeeeEEEeecccCCCcEE-EEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhcc
Q psy10448 138 EWLIANRVINSKTLRDGSTI-YLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKS 194 (1001)
Q Consensus 138 ~~~~~~ri~~~~~~~~~~~~-~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~~ 194 (1001)
+| .|++|++++...+|..+ |||||+|.+++++|||.++. +..+++.|+.|.....
T Consensus 8 ey-~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~en-L~~~~~li~~f~~~~~ 63 (70)
T 1g6z_A 8 EY-EVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPEN-LSGCSAVLAEWKRRKR 63 (70)
T ss_dssp SS-CCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGG-GSSCHHHHHHHHHHHT
T ss_pred eE-EEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHH-HhhhHHHHHHHHHhcc
Confidence 44 89999999987667788 99999999999999998775 5577889999987653
No 103
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.52 E-value=4.5e-08 Score=82.56 Aligned_cols=54 Identities=28% Similarity=0.633 Sum_probs=44.7
Q ss_pred CCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 137 PEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 137 ~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
++...|++|++++. .+|..+|||||+|.+++++|||.++. + .+++.|+.|....
T Consensus 14 ~~ey~VEkIld~R~-~~g~~eYlVKWkGy~~~~~TWEp~en-L-~c~~lI~~F~~~~ 67 (69)
T 1q3l_A 14 EEEYAVEKIIDRRV-RKGMVEYYLKWKGYPETENTWEPENN-L-DCQDLIQQYEASR 67 (69)
T ss_dssp --CEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGG-E-ECHHHHHHHHHHC
T ss_pred CCcEEEEEEEEEEE-ECCeEEEEEEEcCCCcccCCccchHH-C-CCHHHHHHHHHHc
Confidence 55679999999987 46789999999999999999999875 5 5788999998643
No 104
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=98.50 E-value=1.4e-07 Score=80.93 Aligned_cols=53 Identities=23% Similarity=0.601 Sum_probs=44.9
Q ss_pred CCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 137 PEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 137 ~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
.+| .|++||+++. ..|..+|||||+|.+++++|||.++. + .+++.|+.|....
T Consensus 12 ~ey-~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~n-L-~~~~li~~f~~~~ 64 (73)
T 1ap0_A 12 EEY-VVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEEN-L-DCPDLIAEFLQSQ 64 (73)
T ss_dssp SCC-EEEEEEEEEE-CSSSEEEEEEEESSSSCCCEEEETTT-C-CCHHHHHHHTTTT
T ss_pred ceE-EEEEEEEEEE-eCCeEEEEEEECCCCCccCcEeeHHH-C-CCHHHHHHHHHHh
Confidence 344 9999999986 46789999999999999999999875 4 5788999998654
No 105
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.47 E-value=7.1e-08 Score=78.06 Aligned_cols=51 Identities=22% Similarity=0.602 Sum_probs=42.7
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
..|++||+++.. .|..+|||||+|.|++++|||.++. + ..++.|+.|..+.
T Consensus 3 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~n-l-~~~~li~~f~~~q 53 (55)
T 3f2u_A 3 YVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEEN-L-DCPDLIAEFLQSQ 53 (55)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG-C-CCHHHHHHHHC--
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEEeCCCccCCeeEHHH-C-CCHHHHHHHHHHc
Confidence 368999999875 6889999999999999999999875 4 5788999998543
No 106
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=98.45 E-value=8.8e-08 Score=78.67 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=42.9
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
..|++||+++.. .|..+|||||+|.|++++|||.++. + ..++.|..|..+.
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~n-l-~~~~li~~f~~~~ 54 (59)
T 3fdt_A 4 YVVEKVLDRRVV-KGQVEYLLKWKGFSEEHNTWEPEKN-L-DCPELISEFMKKY 54 (59)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG-E-ECHHHHHHHHC--
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEeCCCcccCCccchhH-C-CCHHHHHHHHHhh
Confidence 579999999974 6889999999999999999999875 4 5788999998654
No 107
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.42 E-value=1.4e-07 Score=76.08 Aligned_cols=50 Identities=24% Similarity=0.538 Sum_probs=42.2
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
..|++|++++.. .|..+|||||+|.+++++|||.+.. +.+ ++.|..|..+
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~n-l~~-~~li~~f~~R 53 (54)
T 3i91_A 4 FAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEEN-ILD-ARLLAAFEER 53 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGGG-BCC-HHHHHHHHHC
T ss_pred EEEEEEEEEEEe-CCcEEEEEEEeCCCcccCcccchhH-CCC-HHHHHHHHhc
Confidence 579999999874 6889999999999999999998775 444 7888888754
No 108
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.2e-07 Score=79.93 Aligned_cols=53 Identities=26% Similarity=0.515 Sum_probs=43.6
Q ss_pred CCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 137 PEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 137 ~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
.+| .|++|++++.. .|..+|||||+|.+++++|||.++. +.+ .+.|+.|..+.
T Consensus 9 ~ey-~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~n-l~~-~~li~~f~~~~ 61 (74)
T 2d9u_A 9 QVF-AAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEEN-ILD-PRLLLAFQKKE 61 (74)
T ss_dssp CCC-CEEEEEEEEEE-TTEEEEEEEETTSCTTTCEEEEGGG-CCC-HHHHHHHHHHH
T ss_pred ccE-EEEEEEEEEEe-CCcEEEEEEECCCCCccCccccHHH-CCC-HHHHHHHHHhh
Confidence 345 99999999874 6789999999999999999998775 444 57889888654
No 109
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.39 E-value=1.6e-07 Score=76.03 Aligned_cols=50 Identities=28% Similarity=0.586 Sum_probs=42.0
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
..|++|++++. ..|..+|||||+|.+++++|||.++. +.+ .+.|+.|...
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVKWkgy~~~~~TWEp~~~-l~~-~~li~~f~~~ 53 (55)
T 1pfb_A 4 YAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVN-ILD-RRLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGG-CCS-THHHHHHHTS
T ss_pred EEEEEEEEEEE-eCCeEEEEEEEcCCCCccCcEeEHHH-CCC-HHHHHHHHHh
Confidence 48999999987 46789999999999999999998875 444 6788888754
No 110
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=98.37 E-value=2e-07 Score=75.05 Aligned_cols=50 Identities=30% Similarity=0.587 Sum_probs=41.5
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
..|++|++++. ..|..+|||||+|.+++++|||.++. +.+ .+.|..|..+
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~n-l~~-~~li~~f~~r 53 (54)
T 3h91_A 4 FAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEEN-ILD-PRLLLAFQKK 53 (54)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGG-BCS-HHHHHHHHC-
T ss_pred eEEEEEEEEEE-eCCcEEEEEEEeCCCCcCCCeecHhH-CCC-HHHHHHHHhc
Confidence 57999999987 46889999999999999999998775 433 6788888753
No 111
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.36 E-value=3.2e-07 Score=78.24 Aligned_cols=52 Identities=29% Similarity=0.575 Sum_probs=43.0
Q ss_pred CCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 137 PEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 137 ~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
.+| .|++|++.+. .+|..+|||||+|.+++++|||.++. +.+ ++.|+.|..+
T Consensus 20 ~ey-eVEkIld~r~-~~g~~~YlVKWkGy~~~~~TWEp~en-L~~-~~li~~F~~~ 71 (73)
T 2k1b_A 20 QVF-AVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEH-ILD-PRLVMAYEEK 71 (73)
T ss_dssp CCC-CCSEEEEEEE-ETTEEEEEEECTTCCGGGCCEEETTS-CSC-HHHHHHHHTS
T ss_pred ceE-EEEEEEEEEE-cCCcEEEEEEECCCCcccCeecchHH-CCC-HHHHHHHHHh
Confidence 344 8999999986 46789999999999999999999875 444 7889988753
No 112
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=98.34 E-value=4.5e-08 Score=78.61 Aligned_cols=47 Identities=36% Similarity=0.724 Sum_probs=38.9
Q ss_pred eeeEEEeecccCCCcE-EEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 141 IANRVINSKTLRDGST-IYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 141 ~~~ri~~~~~~~~~~~-~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
.|++|++++...+|.. +|||||+| |+++|||.++. +. ++.|+.|...
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkg--y~~~TWEp~~n-L~--~~li~~f~~~ 49 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQDN-VD--STLVLLYQQQ 49 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSS--SSSCSCSTTCC-SS--SSSHHHHTSS
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECC--CCcCCccchHH-CC--HHHHHHHHHH
Confidence 5899999998766888 99999998 89999999875 43 5678888753
No 113
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=98.33 E-value=8.5e-08 Score=79.61 Aligned_cols=52 Identities=29% Similarity=0.581 Sum_probs=44.3
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
..|++|++++. ..|..+|||||+|.+++++|||.++. +...++.+..|....
T Consensus 5 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~n-l~~~~~li~~f~~~~ 56 (62)
T 3lwe_A 5 FEVEKILDMKT-EGGKVLYKVRWKGYTSDDDTWEPEIH-LEDCKEVLLEFRKKI 56 (62)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEHHH-HTTCHHHHHHHHHHH
T ss_pred EEEEEEEEEEE-cCCeEEEEEEEeCCCCcCCCeeeHhH-hhccHHHHHHHHHhh
Confidence 57999999986 46889999999999999999998774 556788999998654
No 114
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.31 E-value=3.5e-07 Score=76.18 Aligned_cols=49 Identities=24% Similarity=0.528 Sum_probs=41.6
Q ss_pred eeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 141 IANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 141 ~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
.|++|++++.. .|..+|||||+|.|++++|||.++. +. .++.|+.|...
T Consensus 2 EVE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~n-l~-c~~li~~f~~~ 50 (64)
T 3mts_A 2 EVEYLCDYKKI-REQEYYLVKWRGYPDSESTWEPRQN-LK-CVRILKQFHKD 50 (64)
T ss_dssp CEEEEEEEEEC-SSCEEEEEEETTSCGGGCEEEEGGG-CC-CHHHHHHHHHH
T ss_pred CceEEEEEEEe-CCeEEEEEEEecCCCcCCcEeEHHH-CC-CHHHHHHHHHH
Confidence 58999999874 6889999999999999999999875 43 67888888754
No 115
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.31 E-value=2.3e-07 Score=78.87 Aligned_cols=52 Identities=27% Similarity=0.529 Sum_probs=42.1
Q ss_pred CceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhh
Q psy10448 138 EWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK 192 (1001)
Q Consensus 138 ~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~ 192 (1001)
+...|++|++++. ..|..+|||||+|.+++++|||.++. +.+ ++.|+.|..+
T Consensus 19 ~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~nTWEP~en-L~~-~~lI~~F~~~ 70 (72)
T 1pdq_A 19 LVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVN-ILD-RRLIDIYEQT 70 (72)
T ss_dssp EEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGG-CCS-THHHHHHC--
T ss_pred ceEEEEEEEEEEE-eCCcEEEEEEECCCCCccCeecchHH-CCC-HHHHHHHHHh
Confidence 4559999999987 56789999999999999999998775 443 6788888643
No 116
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=98.30 E-value=5.1e-07 Score=77.70 Aligned_cols=51 Identities=29% Similarity=0.597 Sum_probs=42.7
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
..|++|++++. ..|..+|||||+|.+++++|||.++. +.+ .+.|+.|..+.
T Consensus 14 y~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~~-L~~-~~li~~f~~~~ 64 (74)
T 2kvm_A 14 FAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEH-ILD-PRLVMAYEEKE 64 (74)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEETTT-CSC-HHHHHHHHHHH
T ss_pred EEEEEEEEEEE-eCCcEEEEEEEcCCCCccCeEeeHHH-CCC-HHHHHHHHHHh
Confidence 48999999986 46789999999999999999999875 444 57888887643
No 117
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=98.21 E-value=1.6e-06 Score=77.62 Aligned_cols=56 Identities=25% Similarity=0.529 Sum_probs=45.8
Q ss_pred CCceeeeEEEeeccc-CCCcEEEEEeCCCCC-CCccccccCCCCCcchHHHHHHHHhhc
Q psy10448 137 PEWLIANRVINSKTL-RDGSTIYLVKWRDLP-YDKATWEDENEDIPGLKESIEFYNKKK 193 (1001)
Q Consensus 137 ~~~~~~~ri~~~~~~-~~~~~~~lvKW~~L~-Y~~~tWe~~~~~~~~~~~~i~~y~~~~ 193 (1001)
.+=..|++||++|.. +.|..+|||||+|-+ .+++|||.+.. +..++++|+.|+...
T Consensus 28 ~eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~n-l~~c~~li~~f~~~~ 85 (92)
T 2rso_A 28 EDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEAD-CSGCKQLIEAYWNEH 85 (92)
T ss_dssp CCCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGG-GGTSHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHH-HhhHHHHHHHHHHHc
Confidence 344589999999975 467899999999987 67899998774 667789999998654
No 118
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=98.18 E-value=1.3e-06 Score=72.18 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=39.3
Q ss_pred CceeeeEEEeecccCCCcE-EEEEeCCCCCCCccccccCCCCCcchHHHHHHHHh
Q psy10448 138 EWLIANRVINSKTLRDGST-IYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNK 191 (1001)
Q Consensus 138 ~~~~~~ri~~~~~~~~~~~-~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~ 191 (1001)
+-..|++|++++... |.. +|||||+|.|.+++|||.+.. +.+ .+.|..|+.
T Consensus 6 ~ey~VE~Il~~r~~~-g~~~~YlVkWkGy~~~~~TWEp~~n-l~~-~~li~~~~~ 57 (61)
T 3g7l_A 6 DVYEVEDILADRVNK-NGINEYYIKWAGYDWYDNTWEPEQN-LFG-AEKVLKKWK 57 (61)
T ss_dssp CEEEEEEEEEEEECT-TSCEEEEEEETTSCGGGCEEEEGGG-GTB-CHHHHHHHH
T ss_pred cEEEEEEEEEEEEEC-CCEEEEEEEEeCCCCcCCceeeHhH-CCC-HHHHHHHHH
Confidence 346899999999754 555 999999999999999998775 433 455555554
No 119
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.06 E-value=4.1e-06 Score=101.55 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=61.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHC--CC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA--PD 323 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~--p~ 323 (1001)
+++||+|.+.+.-+......++.+++...||+|||+..+..+....... ..+++|++| .++..|+.+++.++. ..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 3689999999987777777888999999999999999877655544332 246899999 567799999988764 25
Q ss_pred CeEEEEeC
Q psy10448 324 FYVVTYVG 331 (1001)
Q Consensus 324 ~~vv~y~g 331 (1001)
+++++..|
T Consensus 80 ~~~~~l~g 87 (620)
T 4a15_A 80 IRAIPMQG 87 (620)
T ss_dssp CCEEECCC
T ss_pred eEEEEEEC
Confidence 66666555
No 120
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.86 E-value=0.0043 Score=74.36 Aligned_cols=132 Identities=18% Similarity=0.125 Sum_probs=83.9
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCe
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFY 325 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 325 (1001)
+..|-+.|.+++..+. .+...++.-..|+|||.++.+++..+...+ .++++++|.........+.. ...
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~Aa~~L~e~~----~~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKAARRLGEVT----GRT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHH----TSC
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHHHHHhHhhh----ccc
Confidence 4678899999998765 566788899999999998888877766543 46999999887765544421 111
Q ss_pred EEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcccH
Q psy10448 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSK 405 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk 405 (1001)
...++ ..+. + . . .. +.. ..-....+++|||||||.+-. ..
T Consensus 256 a~Tih------~ll~---~--~-------------~--~~----------~~~--~~~~~~~~dvlIIDEasml~~--~~ 295 (574)
T 3e1s_A 256 ASTVH------RLLG---Y--G-------------P--QG----------FRH--NHLEPAPYDLLIVDEVSMMGD--AL 295 (574)
T ss_dssp EEEHH------HHTT---E--E-------------T--TE----------ESC--SSSSCCSCSEEEECCGGGCCH--HH
T ss_pred HHHHH------HHHc---C--C-------------c--ch----------hhh--hhcccccCCEEEEcCccCCCH--HH
Confidence 11100 0000 0 0 0 00 000 001123678999999999842 24
Q ss_pred HHHHHhcccccceEeeecCCCCC
Q psy10448 406 FFKFLSGYSIQNKLLLTGTPLQN 428 (1001)
Q Consensus 406 ~~~al~~l~~~~rllLTGTPlqN 428 (1001)
....+..+....+++|.|-|-|.
T Consensus 296 ~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 296 MLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp HHHHHTTSCTTCEEEEEECTTSC
T ss_pred HHHHHHhCcCCCEEEEEeccccc
Confidence 44555666777899999999884
No 121
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.85 E-value=0.0026 Score=77.58 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=53.5
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch-HHHHHHHHHHHC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWA 321 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~ 321 (1001)
+..|-+.|.+||...+ ....-.|+.-..|+|||.+.+.++..+...+ .++||++|++. +.+-...+....
T Consensus 187 ~~~LN~~Q~~AV~~al---~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFAL---SQKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp STTCCHHHHHHHHHHH---HCSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh---cCCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 3568999999997754 2333478889999999999999999888754 36999999655 466666666543
No 122
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.76 E-value=0.00056 Score=69.60 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=37.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..++.||.+|+.||+....|++||++|.|++..+ +.|++..
T Consensus 109 Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 153 (185)
T 2jgn_A 109 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 153 (185)
T ss_dssp --CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE--EEEECGG
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE--EEEEchh
Confidence 59999999999999999999999999999999987654 4466654
No 123
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=96.75 E-value=0.00037 Score=70.13 Aligned_cols=52 Identities=29% Similarity=0.466 Sum_probs=36.8
Q ss_pred ceeeeEEEeecccC--C----------------CcEEEEEeCCCCCCCccccccCCCC--CcchHHHHHHHHh
Q psy10448 139 WLIANRVINSKTLR--D----------------GSTIYLVKWRDLPYDKATWEDENED--IPGLKESIEFYNK 191 (1001)
Q Consensus 139 ~~~~~ri~~~~~~~--~----------------~~~~~lvKW~~L~Y~~~tWe~~~~~--~~~~~~~i~~y~~ 191 (1001)
.-.||.|++|+... + +..+|||||+|.+|-+|||+.+..- .++++ -++.|.+
T Consensus 12 ~~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glk-Kl~nf~k 83 (177)
T 2h1e_A 12 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLK-RLDNYCK 83 (177)
T ss_dssp CCCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCSCTTHH-HHHHHHH
T ss_pred CCcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhhchHHH-HHHHHHH
Confidence 34689999998643 1 1379999999999999999987641 34432 2555654
No 124
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.71 E-value=0.009 Score=69.57 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCC-CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~-g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
..|-+-|.+++..+......+. ..+|.-..|+|||..+.+++..+...+. ..+++++|.....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHH
Confidence 3688999999987765544444 6888999999999999888888877653 3589999987654
No 125
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.69 E-value=0.00082 Score=67.42 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=38.9
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTR 786 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~ 786 (1001)
++|+..++.||.+|+.||+....|++||++|.|+...+.+ |++.
T Consensus 94 Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~ 137 (172)
T 1t5i_A 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSD 137 (172)
T ss_dssp TCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE--EECS
T ss_pred CcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE--EEcC
Confidence 6999999999999999999999999999999999876554 4544
No 126
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.63 E-value=0.00046 Score=68.51 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=43.8
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKR 799 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~ 799 (1001)
++|+..++.||++|+.|||....|++||++|.||...+. .|++.. |...+.....
T Consensus 98 Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 98 GIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI--SFVTAF--EKRFLADIEE 152 (163)
T ss_dssp TCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEE--EEECGG--GHHHHHHHHH
T ss_pred CCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEE--EEecHH--HHHHHHHHHH
Confidence 699999999999999999999999999999999887654 456544 4444444443
No 127
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.59 E-value=0.011 Score=71.57 Aligned_cols=166 Identities=19% Similarity=0.261 Sum_probs=92.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCCCCe
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAPDFY 325 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 325 (1001)
..|-+.|.+++..+. .+...++.-..|+|||.++..++..+... ...++||++|.... .+-...+.+. +..
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--~~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 250 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc--CCe
Confidence 358899999997664 34567888899999999999888877643 23469999997655 4444555543 233
Q ss_pred EEEEeCCchhhhhhhc--cccccccccc----------------cCCCCc-----cc--------cCCCccccEEEecHH
Q psy10448 326 VVTYVGDKDCRIVLRD--HDISWEDTAN----------------RGGKPC-----RI--------RSSTVKFHVLLTSYE 374 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~--~e~~~~~~~~----------------~~~~~~-----~~--------~~~~~~~dVvItTYe 374 (1001)
++- .|... +..+.. ..+....... ..+... .. .......+||++|..
T Consensus 251 ~~R-~~~~~-r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~ 328 (624)
T 2gk6_A 251 VVR-LCAKS-REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV 328 (624)
T ss_dssp EEE-CCCTG-GGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETG
T ss_pred EEe-ecccc-chhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcCh
Confidence 332 22211 100000 0000000000 000000 00 001124578888865
Q ss_pred HHHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCC
Q psy10448 375 LITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQN 428 (1001)
Q Consensus 375 ~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN 428 (1001)
.+.. ..+....|++||||||...-.+. . .+..+....+++|-|=|-|-
T Consensus 329 ~~~~--~~l~~~~fd~viIDEAsQ~~e~~--~--li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 329 GAGD--PRLAKMQFRSILIDESTQATEPE--C--MVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GGGC--GGGTTCCCSEEEETTGGGSCHHH--H--HHHHTTTBSEEEEEECTTSC
T ss_pred hhcc--hhhhcCCCCEEEEecccccCcHH--H--HHHHHhcCCeEEEecChhcc
Confidence 5432 23556789999999997654332 1 12222335689999998773
No 128
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=95.53 E-value=0.0004 Score=69.49 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=37.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++|+..++.||++|+.||+....|++||++|.||...|.++
T Consensus 93 Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 93 GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 69999999999999999999999999999999998776543
No 129
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.47 E-value=0.0011 Score=67.86 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=36.8
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..++.||.+|+.||+....|++||++|.|++..+. .|++..
T Consensus 117 Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i--~l~~~~ 161 (191)
T 2p6n_A 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIAT--TFINKA 161 (191)
T ss_dssp TCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEE--EEECTT
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEE--EEEcCc
Confidence 599999999999999999999999999999999987554 466654
No 130
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.00075 Score=84.39 Aligned_cols=36 Identities=42% Similarity=0.570 Sum_probs=31.1
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVM 779 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~ 779 (1001)
+|||+.|++||++||+| +-.+-+=|.+|++.-..-.
T Consensus 638 GlNL~~a~~VI~~D~~w---np~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 638 GINLMTADTVVIFDSDW---NPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp TCCCTTCCEEEESSCCS---CSHHHHHHHTTTSCSSCCS
T ss_pred CCCccccceEEEecCCC---ChhhHHHHHHHHHhcCCCc
Confidence 69999999999999998 8888888889887766543
No 131
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.32 E-value=0.0014 Score=65.11 Aligned_cols=47 Identities=32% Similarity=0.426 Sum_probs=36.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSV 789 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~Ti 789 (1001)
++|+..++.||.+|+.||+....|++||++|.|+...+ +.|++.+..
T Consensus 93 G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp TCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 68999999999999999999999999999999987755 456777654
No 132
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.022 Score=70.76 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=92.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCCCCe
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAPDFY 325 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 325 (1001)
..|-+.|.++|..+. .+.-.++.-..|+|||.++..++..+.... ..++||++|.... .+-...+.+.. ..
T Consensus 359 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 368899999997664 344578888999999999998888776532 3469999997655 55555566542 33
Q ss_pred EEEEeCCchhhhhhhcc--cccccccccc---------------CCCCc-----c--------ccCCCccccEEEecHHH
Q psy10448 326 VVTYVGDKDCRIVLRDH--DISWEDTANR---------------GGKPC-----R--------IRSSTVKFHVLLTSYEL 375 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~~--e~~~~~~~~~---------------~~~~~-----~--------~~~~~~~~dVvItTYe~ 375 (1001)
++-. |... +..+... ...+...... .+... . ........+||++|...
T Consensus 431 ilR~-g~~~-r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 508 (802)
T 2xzl_A 431 VVRL-TAKS-REDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVG 508 (802)
T ss_dssp EEEC-CCGG-GTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTG
T ss_pred EEee-cccc-hhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhh
Confidence 3322 2211 1000000 0000000000 00000 0 00012245788888765
Q ss_pred HHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCC
Q psy10448 376 ITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQ 427 (1001)
Q Consensus 376 l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlq 427 (1001)
+.. ..+.. .|++||||||+.+-... ..+..+....+++|-|=|-|
T Consensus 509 ~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 509 AGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp GGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 542 23444 89999999998764322 12222334568999999877
No 133
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.21 E-value=0.024 Score=70.41 Aligned_cols=166 Identities=18% Similarity=0.247 Sum_probs=92.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH-HHHHHHHHHHCCCCe
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAPDFY 325 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 325 (1001)
..|-+.|.+++.... .+.-.++.-..|+|||.++..++..+... ...++||++|.... .+-...+... +..
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 468899999997654 34557889999999999998888877653 23469999997665 4444444433 233
Q ss_pred EEEEeCCchhhhhhhc-c-cccccccc----------------ccCCCCcc-----c--------cCCCccccEEEecHH
Q psy10448 326 VVTYVGDKDCRIVLRD-H-DISWEDTA----------------NRGGKPCR-----I--------RSSTVKFHVLLTSYE 374 (1001)
Q Consensus 326 vv~y~g~~~~r~~i~~-~-e~~~~~~~----------------~~~~~~~~-----~--------~~~~~~~dVvItTYe 374 (1001)
++- .|... +..+.. . .+.+.... ...+.... . .......+||++|..
T Consensus 427 vvR-lg~~~-r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~ 504 (800)
T 2wjy_A 427 VVR-LCAKS-REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV 504 (800)
T ss_dssp EEE-CCCGG-GGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETG
T ss_pred eEe-ecccc-hhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchh
Confidence 322 23221 100000 0 00000000 00000000 0 001124578888866
Q ss_pred HHHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCC
Q psy10448 375 LITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQN 428 (1001)
Q Consensus 375 ~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN 428 (1001)
.+.. ..+....|++||||||..+-... ..+..+....+++|-|=|-|-
T Consensus 505 ~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 505 GAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 5432 23555679999999997664322 122223345689999998773
No 134
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.18 E-value=0.023 Score=68.59 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CCCCcEEEEeCcchHHH-HHHHHHHHCCCCeEE
Q psy10448 250 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLSTIIN-WEREFETWAPDFYVV 327 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~-~~~~p~LIV~P~sll~q-W~~E~~k~~p~~~vv 327 (1001)
-+.|..++.-.. .+...++.-..|+|||.++..++..+.... .....+++++|+..... -.+.+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l- 225 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL- 225 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC-
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC-
Confidence 568999997655 567789999999999988777777665431 12235899999776543 33333332211100
Q ss_pred EEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEE-ecHHH--HHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 328 TYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLL-TSYEL--ITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 328 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvI-tTYe~--l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
....+..+. ......+-++ ++... +... ......+++||||||+.+. ..
T Consensus 226 ----~~~~~~~~~--------------------~~~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~ 277 (608)
T 1w36_D 226 ----TDEQKKRIP--------------------EDASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LP 277 (608)
T ss_dssp ----CSCCCCSCS--------------------CCCBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HH
T ss_pred ----CHHHHhccc--------------------hhhhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HH
Confidence 000000000 0000000000 00000 1111 1122367899999999774 23
Q ss_pred HHHHHHhcccccceEeeecCCCCCC
Q psy10448 405 KFFKFLSGYSIQNKLLLTGTPLQNN 429 (1001)
Q Consensus 405 k~~~al~~l~~~~rllLTGTPlqN~ 429 (1001)
.+...+..+....+++|.|=|-|-.
T Consensus 278 ~~~~Ll~~l~~~~~liLvGD~~QL~ 302 (608)
T 1w36_D 278 MMSRLIDALPDHARVIFLGDRDQLA 302 (608)
T ss_dssp HHHHHHHTCCTTCEEEEEECTTSGG
T ss_pred HHHHHHHhCCCCCEEEEEcchhhcC
Confidence 4455666777788999999987754
No 135
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=95.74 E-value=0.0011 Score=60.88 Aligned_cols=44 Identities=30% Similarity=0.697 Sum_probs=30.6
Q ss_pred EeecccCCCcEEEEEeCCCCCCCccccccCCC----CCcchHHHHHHHHh
Q psy10448 146 INSKTLRDGSTIYLVKWRDLPYDKATWEDENE----DIPGLKESIEFYNK 191 (1001)
Q Consensus 146 ~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~----~~~~~~~~i~~y~~ 191 (1001)
++.+. ..|..+|||||+|-++.++|||.+.. ...+++ .++.|.+
T Consensus 49 ldkR~-~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~k-klenY~k 96 (115)
T 2b2y_C 49 FEKNK-EPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMK-KLDNYKK 96 (115)
T ss_dssp CCTTS-SSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTH-HHHHHHC
T ss_pred cccce-eCCcEEEEEEECCCCchhcccCCHHHcCCccchHHH-HHHHHHH
Confidence 44443 35678999999999999999998764 122333 5666653
No 136
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.56 E-value=0.062 Score=60.81 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=84.4
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHC---
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWA--- 321 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~--- 321 (1001)
.+.|.|||...+..|. ..+.+++.-.-+.|||..+.+++....... ....+++++|.. ....+.+.+..+.
T Consensus 161 p~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp ECCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4689999999887653 224478888999999998887776644332 234588888854 3333446665553
Q ss_pred CC-CeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccC
Q psy10448 322 PD-FYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLK 400 (1001)
Q Consensus 322 p~-~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lK 400 (1001)
|. +.......+ ...+.+ .....+ .++++ +...+......++|+||+|.++
T Consensus 236 P~ll~~~~~~~~--------~~~I~f--------------~nGs~i-~~lsa------~~~slrG~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 236 PDFLQPGIVEWN--------KGSIEL--------------DNGSSI-GAYAS------SPDAVRGNSFAMIYIEDCAFIP 286 (385)
T ss_dssp CTTTSCCEEEEC--------SSEEEE--------------TTSCEE-EEEEC------SHHHHHTSCCSEEEEESGGGST
T ss_pred hHhhhhhhccCC--------ccEEEe--------------CCCCEE-EEEEC------CCCCccCCCCCEEEechhhhcC
Confidence 32 110000000 000100 001111 22232 3344556778899999999998
Q ss_pred CcccHHHHHHhc-cc--ccceEeeecCCCCC
Q psy10448 401 SNQSKFFKFLSG-YS--IQNKLLLTGTPLQN 428 (1001)
Q Consensus 401 N~~Sk~~~al~~-l~--~~~rllLTGTPlqN 428 (1001)
+. ..++.++.. +. ...++++++||-..
T Consensus 287 ~~-~el~~al~~~ls~~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 287 NF-HDSWLAIQPVISSGRRSKIIITTTPNGL 316 (385)
T ss_dssp TH-HHHHHHHHHHHHSTTCCEEEEEECCCSS
T ss_pred CC-HHHHHHHHHHhhcCCCCcEEEEeCCCCc
Confidence 63 234444432 22 34688899999654
No 137
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=95.20 E-value=0.0079 Score=61.01 Aligned_cols=39 Identities=33% Similarity=0.680 Sum_probs=27.9
Q ss_pred CCcEEEEEeCCCCCCCccccccCCCC----CcchHHHHHHHHhh
Q psy10448 153 DGSTIYLVKWRDLPYDKATWEDENED----IPGLKESIEFYNKK 192 (1001)
Q Consensus 153 ~~~~~~lvKW~~L~Y~~~tWe~~~~~----~~~~~~~i~~y~~~ 192 (1001)
.|..+|||||+|.+|.+|||+.+... +.+ ...+..|.++
T Consensus 55 ~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~-~~kl~nf~kk 97 (187)
T 2b2y_A 55 PGEIQYLIKWKGWSHIHNTWETEETLKQQNVRG-MKKLDNYKKK 97 (187)
T ss_dssp CCEEEEEEEETTSCGGGCEEECHHHHHHTTCBC-HHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcccCeeCCHHHhCccchhh-HHHHHHHHHh
Confidence 46789999999999999999986541 222 2346666543
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.07 E-value=0.039 Score=55.80 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=27.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
.++.-.||.|||..++.++..+...+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 56788999999999988887765543 357888775
No 139
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.00 E-value=0.016 Score=57.95 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=31.2
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCe
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 777 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~ 777 (1001)
++|+..++.||.+|+.|||+.+.++...+||+|....
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR 133 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGR 133 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC--
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhccccc
Confidence 6999999999999999999999999999999998754
No 140
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.83 E-value=0.012 Score=60.91 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=41.5
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAK 798 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~ 798 (1001)
++|+..++.||.+|+.|++....|++||++|.|+.. .++.|++.. |...+....
T Consensus 94 Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~ 147 (212)
T 3eaq_A 94 GLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALE 147 (212)
T ss_dssp SSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHH
T ss_pred CCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHH
Confidence 599999999999999999999999999999999875 445567664 334444333
No 141
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.79 E-value=0.0073 Score=67.13 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=40.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSV 789 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~Ti 789 (1001)
++|+..++.||.+++.||+....|++||++|.|+...+.+ +++....
T Consensus 301 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~ 347 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRREY 347 (367)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTSH
T ss_pred CCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcHHHH
Confidence 5999999999999999999999999999999998876655 5665533
No 142
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.70 E-value=0.012 Score=66.28 Aligned_cols=57 Identities=14% Similarity=0.316 Sum_probs=44.4
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRK 800 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K 800 (1001)
++|+..++.||++|+.||+....|++||++|.|+...+.+ |++.. -+..++...+.+
T Consensus 313 Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~~~~~ 369 (391)
T 1xti_A 313 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQDR 369 (391)
T ss_dssp CBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSH-HHHHHHHHHHHH
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--EEccc-chHHHHHHHHHH
Confidence 6999999999999999999999999999999998776655 44433 244454444443
No 143
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.60 E-value=0.1 Score=62.67 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=84.2
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCC
Q psy10448 246 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDF 324 (1001)
Q Consensus 246 ~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~ 324 (1001)
++.|.|||...+..+ + ..+..++.-.-|.|||..+.+++.......+ ...+++++|. .........+..+....
T Consensus 161 ~~~l~p~Q~~i~~~l---~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIM---S-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp BCCCCHHHHHHHHHH---H-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCcCCHHHHHHHHhh---c-cccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 467999999988655 2 2345788889999999988776665554432 3368999884 33344446666664221
Q ss_pred eEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc
Q psy10448 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS 404 (1001)
Q Consensus 325 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S 404 (1001)
... .... .. ......+.+ .....+.++-.+. ..+.....+++|+||+|..++..
T Consensus 236 p~~--~~~~-~~-~~~~~~i~~--------------~nGs~i~~~s~~~-------~~lrG~~~~~~iiDE~~~~~~~~- 289 (592)
T 3cpe_A 236 PDF--LQPG-IV-EWNKGSIEL--------------DNGSSIGAYASSP-------DAVRGNSFAMIYIEDCAFIPNFH- 289 (592)
T ss_dssp CTT--TSCC-EE-EECSSEEEE--------------TTSCEEEEEECCH-------HHHHHSCCSEEEEETGGGCTTHH-
T ss_pred hHh--hccc-cc-cCCccEEEe--------------cCCCEEEEEeCCC-------CCccCCCcceEEEehhccCCchh-
Confidence 100 0000 00 000000100 0011122222222 33444567899999999997642
Q ss_pred HHHHHHhcc-c--ccceEeeecCCCCC
Q psy10448 405 KFFKFLSGY-S--IQNKLLLTGTPLQN 428 (1001)
Q Consensus 405 k~~~al~~l-~--~~~rllLTGTPlqN 428 (1001)
.++.++... . ...++++++||-..
T Consensus 290 ~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 290 DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 445554432 2 34688999999544
No 144
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.37 E-value=0.38 Score=50.08 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
+.-.++.-+||.|||..++.++..+...+ ..++++.|
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~ 48 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKP 48 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEe
Confidence 33456789999999999999888776543 24777766
No 145
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.28 E-value=0.049 Score=62.51 Aligned_cols=107 Identities=13% Similarity=0.039 Sum_probs=68.3
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC-cchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccccccc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWED 348 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~ 348 (1001)
.++.-..|.|||.....++. .++.||++| ..+...|.+.+.+-. ..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~--------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------II--------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------CC---------------
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc---------------
Confidence 56788999999987766542 135899999 556678887774310 00
Q ss_pred ccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCC
Q psy10448 349 TANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQ 427 (1001)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlq 427 (1001)
..-..-+.|++.+............++||||||..+- ...+...+..++. .+++|.|=|-|
T Consensus 211 ---------------~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 211 ---------------VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp ---------------CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred ---------------ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCccc
Confidence 0001236788877655443333458999999999762 2233333334444 89999999976
No 146
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.15 E-value=0.26 Score=59.53 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=49.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC-CCCcEEEEeCcchH-HHHHHHHHHHC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLSTI-INWEREFETWA 321 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~-~~~p~LIV~P~sll-~qW~~E~~k~~ 321 (1001)
.|-+.|.++|. ...+..++--..|+|||.+.+.-+.++..... ....+|+|+++... .+-.+.+.+..
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 58899999995 23455777778999999999999988887642 33459999986544 45555565553
No 147
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.09 E-value=0.018 Score=65.32 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=39.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNS 788 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~T 788 (1001)
++|+..++.||.+|+.|++....|++||++|.|+...+ +.|++...
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~~ 384 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA--INFVKNDD 384 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE--EEEEEGGG
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEE--EEEecHHH
Confidence 69999999999999999999999999999999987644 44666553
No 148
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.09 E-value=0.017 Score=65.28 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=39.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..++.||.+|+.||+....|++||++|.|+...+ +.|++.+
T Consensus 321 Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~l~~~~ 365 (400)
T 1s2m_A 321 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA--INLINWN 365 (400)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEE--EEEECGG
T ss_pred CCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceE--EEEeccc
Confidence 69999999999999999999999999999999987654 4566665
No 149
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=93.75 E-value=0.048 Score=59.66 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=69.7
Q ss_pred eeEEEeccHHHHHHHHHHHhhC-CCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGE-GYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
...|++....-++.|.+.+... +-+...+..+. ..-..+.+.++..+.. +..+. .
T Consensus 5 ~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~--~~~~~l~~~L~~~g~~--~~~lh--------------------g 60 (300)
T 3i32_A 5 EEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTK--AETEEIAQGLLRLGHP--AQALH--------------------G 60 (300)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSH--HHHHHHHHHHHTTTCC--EEEEC--------------------S
T ss_pred EEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCH--HHHHHHHHHHHhCCCC--EEEEe--------------------C
Confidence 3447777777778888877654 44555555442 2233444455443222 22222 2
Q ss_pred CCCcchhhhhhhhhhhccCcc---------ccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCC
Q psy10448 719 DWNPHNDIQAFSRAHRIGQQN---------KYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNS 788 (1001)
Q Consensus 719 ~WNP~~~iQriGRi~RiGq~~---------~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~T 788 (1001)
..++ ...+++=+..|.|... .++|+..++.||.+|+.|++....|+.||++|.|+.. .+|.|++...
T Consensus 61 ~l~~-~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 61 DMSQ-GERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp CCCT-HHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred CCCH-HHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 2222 1222222233333321 2699999999999999999999999999999999875 4556777653
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.73 E-value=0.31 Score=53.89 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHhhcCCC---CeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 249 LHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~---g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
++|+|.+.+..+.....+++ ..++.-+.|+|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 68999999988877766554 36889999999999999999888643
No 151
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.30 E-value=0.015 Score=65.39 Aligned_cols=45 Identities=31% Similarity=0.417 Sum_probs=0.0
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..++.||.+|+.|++....|++||++|.|+...+.+ |++.+
T Consensus 322 Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 322 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp -----------------------------------------------
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 6999999999999999999999999999999998776555 45544
No 152
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.29 E-value=0.28 Score=49.80 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=27.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
.++.-.||.|||..++..+..+...+ ..++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 46688999999999998887775443 348888875
No 153
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.12 E-value=0.032 Score=63.19 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=33.0
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..++.||.+|+.||+....|++||++|.|+...+ |.|++.+
T Consensus 343 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 387 (414)
T 3eiq_A 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA--INMVTEE 387 (414)
T ss_dssp -CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CE--EEEECST
T ss_pred CCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceE--EEEEcHH
Confidence 59999999999999999999999999999999987654 4567766
No 154
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.95 E-value=0.38 Score=49.69 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=26.9
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 271 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 271 ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
++.-+||.|||..++..+..+...+ ..+||+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 4688999999999999887775544 348888885
No 155
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.77 E-value=0.044 Score=62.16 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=36.9
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..++.||.+|+.|++....|++||++|.|+...+ +.|++..
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 383 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 383 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEE--EEEECGG
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceE--EEEEccc
Confidence 69999999999999999999999999999999987544 4456543
No 156
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.65 E-value=0.042 Score=61.59 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=36.9
Q ss_pred cccccccceeEeecCCC------CCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSDW------NPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~W------NP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++|+..++.||.+|+.| |+....|++||++|.|+...+.++
T Consensus 306 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp SCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 69999999999999999 999999999999999987665543
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.25 E-value=0.21 Score=54.22 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=28.3
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC-CCcEEEEeC
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSAP 306 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~-~~p~LIV~P 306 (1001)
..+.+|.-+.|+|||..+-+++..+...... .++++.+.+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3358899999999999999888877654432 234554443
No 158
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.86 E-value=0.064 Score=61.74 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=39.0
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTR 786 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~ 786 (1001)
+||+..++.||.+|+.|++....|++||++|.|++..+.+ |++.
T Consensus 363 GlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~--~~~~ 406 (434)
T 2db3_A 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATS--FFDP 406 (434)
T ss_dssp SCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEE--EECT
T ss_pred CCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEE--EEec
Confidence 6999999999999999999999999999999998766555 5653
No 159
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=91.61 E-value=0.37 Score=58.06 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=69.3
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEec--ccccccccccc--CCEEEEecC
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLST--RSGGLGINLAT--ADTVIIYDS 718 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlSt--ragg~GINL~~--Ad~VIi~D~ 718 (1001)
||..+-..++.+.+.|. .+... ...+++..+|..++++|. +. + .+|+++ ....+|||++. +..|||.-.
T Consensus 453 vlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~-~--~vL~~v~~gsf~EGiD~~g~~l~~viI~~l 525 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RD-H--GTIFAVSGGRLSEGINFPGNELEMIILAGL 525 (620)
T ss_dssp EEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TS-C--CEEEEETTSCC--------CCCCEEEESSC
T ss_pred EEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cC-C--cEEEEEecCceeccccCCCCceEEEEEEcC
Confidence 88888888888888776 22222 334445568999999999 33 3 256665 48999999987 689999887
Q ss_pred CCC-cchhhhhhhhhh-hc-cCcccc-ccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 719 DWN-PHNDIQAFSRAH-RI-GQQNKY-INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 719 ~WN-P~~~iQriGRi~-Ri-Gq~~~~-LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
|+- |.-..++.-+.. +. |+.... ..+. |-. .-.||+||+-|--..+-|.+.
T Consensus 526 Pfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~-----------~l~Qa~GRlIR~~~D~G~v~l 580 (620)
T 4a15_A 526 PFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAI-----------KIRQEIGRLIRSAEDTGACVI 580 (620)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHH-----------HHHHHHHTTCCSTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHH-----------HHHHHhCccccCCCceEEEEE
Confidence 754 433333333222 22 222210 2222 211 568999999998888877664
No 160
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=91.52 E-value=0.087 Score=43.66 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=27.2
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCcccccc
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED 174 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~ 174 (1001)
+.+++|++.. ..+|...|||||+|..-.+..|..
T Consensus 13 le~ekI~g~~-~~~Gel~fLvKWKg~~~~d~Vpa~ 46 (65)
T 3kup_A 13 LDPERIIGAT-DSSGELMFLMKWKDSDEADLVLAK 46 (65)
T ss_dssp CCEEEEEEEE-CTTSSCEEEEEETTCSCCEEEEHH
T ss_pred CCeeEEeeEE-cCCCcEEEEEEECCCChhheEEHH
Confidence 5899999875 568899999999997766655544
No 161
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.17 E-value=0.95 Score=49.46 Aligned_cols=44 Identities=14% Similarity=-0.072 Sum_probs=30.3
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
..+.+|.-+.|+|||..+-+++..+... ..+++.+....+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAM 80 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHH
Confidence 4578999999999999988888777654 3345555443333333
No 162
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=91.04 E-value=0.067 Score=45.56 Aligned_cols=49 Identities=27% Similarity=0.507 Sum_probs=32.9
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHH-HHHHHh
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKES-IEFYNK 191 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~-i~~y~~ 191 (1001)
+.+++||+.. ..+|...|||||+| +++++|......-..+.+. |+.|..
T Consensus 16 l~~ekI~g~~-~~~Gel~fLvkWkg--~d~~dlVpa~~a~~k~Pq~VI~FYE~ 65 (74)
T 2fmm_A 16 LEPERIIGAT-DSSGELMFLMKWKN--SDEADLVPAKEANVKCPQVVISFYEE 65 (74)
T ss_dssp CCEEEEEEEE-EETTEEEEEEEETT--CSCCEEEEHHHHHHHCHHHHHHHHHT
T ss_pred CCceEEEEEE-cCCCcEEEEEEECC--CCcccEEEHHHHhhhChHHHHHHHHH
Confidence 5789999986 45888999999998 5567887644311233333 455543
No 163
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.32 E-value=0.21 Score=56.31 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=42.5
Q ss_pred cccccccceeEeecCCCCC------cchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDWNP------HNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRK 800 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP------~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K 800 (1001)
++|+..++.||.+|+.||+ ....|++||++|.|+...+.+ |+.. .-+..++...+.+
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~--~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN--MVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEE--EECS-HHHHHHHHHHHHH
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEE--EEcC-hhhHHHHHHHHHH
Confidence 6999999999999999988 589999999999997665544 4543 2334455544444
No 164
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.22 E-value=0.97 Score=49.32 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=31.0
Q ss_pred ceeEEEEcCccccC-C-cccHHHHHHhcccccceEeeecCCCCCCHHHHHHhh
Q psy10448 387 EWAVLVVDEAHRLK-S-NQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLL 437 (1001)
Q Consensus 387 ~w~~VIiDEAH~lK-N-~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL 437 (1001)
...+|||||+|.+. . ....+.+.+.......++++|.++...-...|.+-+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 56899999999984 2 222333444444556778888877554333444433
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.74 E-value=0.99 Score=44.14 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456788999999999999888877644
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.55 E-value=1.2 Score=43.46 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356899999999999999888877654
No 167
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.23 E-value=0.77 Score=47.92 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=25.7
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
-++.-.||.|||..++..+...... ...++|+-|.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~ 56 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 56 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeec
Confidence 4668899999999888887666433 2347888774
No 168
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.51 E-value=0.74 Score=50.50 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 309 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl 309 (1001)
..+.+|.-+.|+|||..|-+++..+ ..+++.|....+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l 87 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDL 87 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHH
Confidence 3468999999999999988887654 345555544333
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.46 E-value=0.79 Score=50.44 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=24.7
Q ss_pred HHHhhcCC--CCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 260 LRYSWGQN--IDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 260 L~~~~~~~--~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
+......+ .+.+|.-+.|+|||..+-+++..+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33333444 4589999999999999888887764
No 170
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.72 E-value=0.28 Score=58.56 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=43.4
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHH
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKR 799 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~ 799 (1001)
++|+..++.||.+|+.+++....|++||++|.|+...+.+ |++.. |..++.....
T Consensus 354 GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 354 GMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD--ELPFVRELED 408 (579)
T ss_dssp SCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG--GHHHHHHHHH
T ss_pred CCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE--EEccc--HHHHHHHHHH
Confidence 5999999999999999999999999999999998765554 45553 4444444433
No 171
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=87.59 E-value=0.16 Score=43.24 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=23.6
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccc
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWE 173 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe 173 (1001)
+.+++|++.. ..+|...|||||+|..-.+..+.
T Consensus 23 le~EkIlg~t-~~~Gel~fLVKWKg~~e~dlVpa 55 (75)
T 3i3c_A 23 LEPEKIIGAT-DSCGDLMFLMKWKDTDEADLVLA 55 (75)
T ss_dssp CCEEEEEEEE-C---CCEEEEEETTSSCEEEEEH
T ss_pred CCeeEEeeEE-ccCCcEEEEEEECCCChhceEEH
Confidence 5899999875 56889999999999666555444
No 172
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.55 E-value=3.8 Score=40.95 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
.+.+|.-+.|.|||..+-+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35899999999999988888776643
No 173
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=87.53 E-value=0.22 Score=43.51 Aligned_cols=55 Identities=15% Similarity=0.376 Sum_probs=37.5
Q ss_pred CCCCCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHH-HHHHHhh
Q psy10448 134 GIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKES-IEFYNKK 192 (1001)
Q Consensus 134 ~~~~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~-i~~y~~~ 192 (1001)
|+..- +.+++|++.. ..+|...|||||+|..--+..|..+.. ..+.+. |+.|..+
T Consensus 21 GF~RG-le~EkIlgat-~~~Gel~fLVKWKg~~e~DlVpa~ean--~k~PqlVI~FYEer 76 (87)
T 3p7j_A 21 GFDRG-LEAEKILGAS-DNNGRLTFLIQFKGVDQAEMVPSSVAN--EKIPRMVIHFYEER 76 (87)
T ss_dssp TTTTT-CCEEEEEEEE-EETTEEEEEEEETTCSSCEEEEHHHHH--HHCHHHHHHHHHHT
T ss_pred CccCC-CCceEEeeEE-ccCCcEEEEEEECCCCccceEeHHHHh--hhChHHHHHHHHHh
Confidence 55433 5899999875 467899999999998877777765432 123333 5556644
No 174
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.42 E-value=0.3 Score=57.91 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCC----CCcEEEEeC-cchHHHHHHHHHHHC-
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC----KGPFLVSAP-LSTIINWEREFETWA- 321 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~----~~p~LIV~P-~sll~qW~~E~~k~~- 321 (1001)
.|+|+|.+++..+. ...+.++|++.+||+|||++++..+...+..... ...+|||+| ..|+.||.+++.+++
T Consensus 94 ~~~~~Q~~~i~~~l--~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPIL--SSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHH--SSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--cCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 59999999997765 1245679999999999999977766655544321 235899999 578899999999863
Q ss_pred -----CCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHhh---hcCCceeEEEE
Q psy10448 322 -----PDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVAL---LGSIEWAVLVV 393 (1001)
Q Consensus 322 -----p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~---L~~~~w~~VIi 393 (1001)
+...+....|........... .....+|+|+|++.+...... ..-..+.+|||
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~-------------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMNKM-------------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHH-------------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hccccCceeEEEEECCcCHHHHHHHH-------------------hcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 234566666654433322110 112468999999999765432 12234789999
Q ss_pred cCccccCCcc--cHHH---HHHhccc-----ccceEeeecCCC
Q psy10448 394 DEAHRLKSNQ--SKFF---KFLSGYS-----IQNKLLLTGTPL 426 (1001)
Q Consensus 394 DEAH~lKN~~--Sk~~---~al~~l~-----~~~rllLTGTPl 426 (1001)
||||++.... .... ..+.... ....+++||||-
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~ 275 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD 275 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCC
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCC
Confidence 9999986442 1111 2222111 335799999973
No 175
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.96 E-value=1.4 Score=48.04 Aligned_cols=38 Identities=5% Similarity=-0.089 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~ 290 (1001)
|.+.+..|.....++. ..|+.-+.|.|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455555554444443 5788999999999988887764
No 176
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.88 E-value=0.78 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=21.5
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..+.+|.-+.|+|||..|-+++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999999999998888765
No 177
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.62 E-value=0.7 Score=47.50 Aligned_cols=29 Identities=10% Similarity=-0.165 Sum_probs=23.7
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
.+.+.+|.-+.|+|||..+-+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45678899999999999998888776544
No 178
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=86.19 E-value=0.29 Score=42.06 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=33.4
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHH-HHHHHHhh
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKE-SIEFYNKK 192 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~-~i~~y~~~ 192 (1001)
+.+++||+.. ..+|...|||||+|..--+..+..+.. ..+.+ .|+.|..+
T Consensus 10 le~EkI~g~~-~~~Gel~fLvKWKg~~~~dlVpa~ean--~k~PqlVI~FYE~~ 60 (78)
T 3q6s_A 10 LEPERIIGAT-DSSGELMFLMKWKNSDEADLVPAKEAN--VKCPQVVISFYEER 60 (78)
T ss_dssp CCEEEEEEEE-CTTSSCEEEEEETTCSCEEEEEHHHHH--HHSHHHHHHHHHTT
T ss_pred CCceEEeeEE-cCCCcEEEEEEECCCChhheEeHHHHH--hhChHHHHHHHHHh
Confidence 5899999875 578899999999998765555543321 12333 35566644
No 179
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.93 E-value=4.9 Score=40.62 Aligned_cols=44 Identities=14% Similarity=-0.044 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
-++..++.+.............+|.-+.|.|||..+-.++..+.
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35555555543333322223578899999999998888776654
No 180
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.87 E-value=1.5 Score=49.72 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=35.8
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 317 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 317 (1001)
...+|.+|.-.+|+|||..|=+++..+ ..|++.|....++..|.-|-
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchH
Confidence 456789999999999999999988765 34678777777766554443
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.87 E-value=0.9 Score=48.48 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.4
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
....+.+|.-+.|+|||..+-+++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667899999999999988877654
No 182
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.82 E-value=2.3 Score=47.19 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=30.6
Q ss_pred ccHHHHHHHH-HHHHhhcC--CCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 249 LHAYQLEGIN-WLRYSWGQ--NIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 249 L~pyQ~egv~-wL~~~~~~--~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
=++.+.+.+. ++...... ..+.+|.-+.|+|||..+-+++..+...
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3556666664 33332222 3458889999999999998888776543
No 183
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=85.57 E-value=0.22 Score=59.51 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=40.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCC---CCeEEEEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ---QNKVMIYRFV 784 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ---~k~V~Vyrlv 784 (1001)
++|+..++.||++++.||+....|++||++|.|+ +..+.||.++
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 5999999999999999999999999999999994 6778888876
No 184
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=85.26 E-value=0.37 Score=56.83 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=37.5
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++|+..++.||.+++.+++....|++||++|.|+...+.++
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 59999999999999999999999999999999998766653
No 185
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.96 E-value=1.5 Score=47.35 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 250 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
++.....+..+.... ...+.+|.-+.|+|||..+-+++..+.
T Consensus 30 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 445555543322221 222588999999999999988887764
No 186
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=84.61 E-value=4.1 Score=48.13 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=69.0
Q ss_pred EEeccHHHHHHHHHHHhhCCCeEEEEEcc-CCHHHHHHHHHHhcCCCCCcEEEEEec--cccccccccc-----cCCEEE
Q psy10448 643 EFYNMTKMLDILEDYLDGEGYKYERIDGN-ITGSMRQESIDRFNAPGASQFVFLLST--RSGGLGINLA-----TADTVI 714 (1001)
Q Consensus 643 IFsq~~~~ldiL~~~L~~~gi~~~ridG~-~s~~eRq~~Id~Fn~~~~~~~v~LlSt--ragg~GINL~-----~Ad~VI 714 (1001)
||..+-..++.+.+. .++++ .+.|. ++ +..+++.|...+. .+|+++ ....+|||++ .+..||
T Consensus 398 vlF~Sy~~l~~v~~~---~~~~v-~~q~~~~~---~~~~~~~~~~~~~---~vl~~v~gg~~~EGiD~~d~~g~~l~~vi 467 (551)
T 3crv_A 398 VVFPSYEIMDRVMSR---ISLPK-YVESEDSS---VEDLYSAISANNK---VLIGSVGKGKLAEGIELRNNDRSLISDVV 467 (551)
T ss_dssp EEESCHHHHHHHHTT---CCSSE-EECCSSCC---HHHHHHHTTSSSS---CEEEEESSCCSCCSSCCEETTEESEEEEE
T ss_pred EEecCHHHHHHHHHh---cCCcE-EEcCCCCC---HHHHHHHHHhcCC---eEEEEEecceecccccccccCCcceeEEE
Confidence 777777777766652 34333 33332 23 5678889964332 256665 6899999999 478999
Q ss_pred EecCCCCcchhhhhhhhhhh----ccC-ccc-cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 715 IYDSDWNPHNDIQAFSRAHR----IGQ-QNK-YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 715 i~D~~WNP~~~iQriGRi~R----iGq-~~~-~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
|.-.|+-+. .-....|.-. .|. ... ...+. |-. .-.||+||+-|--+.+-|.+
T Consensus 468 I~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~-----------~l~Qa~GRlIR~~~D~G~v~ 526 (551)
T 3crv_A 468 IVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALV-----------TIKQAIGRAIRDVNDKCNVW 526 (551)
T ss_dssp EESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHH-----------HHHHHHHTTCCSTTCEEEEE
T ss_pred EEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHH-----------HHHHHhccCccCCCccEEEE
Confidence 988876444 3333333322 232 110 02333 222 56799999999877776655
No 187
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=83.95 E-value=1.9 Score=43.77 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=25.0
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
-++.-.||+|||...+-.+......+ ..++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 46688999999977777666655443 347888774
No 188
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.71 E-value=2.2 Score=44.01 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=25.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
-++.-+||.|||...+-.+..+...+ ..++|+.|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEec
Confidence 46678899999987877765554433 347888874
No 189
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.07 E-value=2.5 Score=46.71 Aligned_cols=44 Identities=18% Similarity=0.093 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 250 HAYQLEGINWLRYSW---GQNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~---~~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
++.+.+.+.-+.... ....+.+|.-+.|+|||..+-+++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555553222222 34557899999999999998888876644
No 190
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=82.98 E-value=6.2 Score=45.21 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=28.2
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 308 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s 308 (1001)
..+.+|.-+.|+|||..+-++...+..... ..+++.+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCC-SSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHH
Confidence 457899999999999998888877655432 23455543333
No 191
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.70 E-value=0.59 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=17.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHHH
Q psy10448 270 TILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l 291 (1001)
.++.-.+|+|||..|+..+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5678899999999988876554
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.68 E-value=2.1 Score=48.10 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=27.4
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 312 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~q 312 (1001)
..+.+|.-+.|+|||..|-+++..+ ..+++.|.+..+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSK 187 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhcc
Confidence 4678999999999999888876542 346666666555443
No 193
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=81.97 E-value=6 Score=43.53 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 250 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
++.....+.............+|.-+.|+|||..+-+++..+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445554433332222222368899999999999988887764
No 194
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=81.93 E-value=0.46 Score=55.74 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=27.0
Q ss_pred cccccccceeEeecCC------CCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSD------WNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~------WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++|+..++.||.+|+. +++....|++||++|.|+...+.++
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 6999999999999998 7889999999999999987766664
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=80.94 E-value=0.67 Score=55.52 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=37.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIY 781 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vy 781 (1001)
++|+..++.||.+++.+++....|++||++|.|+...+.++
T Consensus 330 GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 330 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp TCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 59999999999999999999999999999999997766665
No 196
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.74 E-value=3.9 Score=43.94 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.8
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
+.+|.-+.|.|||..+-+++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999888887764
No 197
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.67 E-value=2.7 Score=44.22 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 259 WLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 259 wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
.+........+.+|.-++|+|||..+-++..... ....|++.|-
T Consensus 21 ~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~ 64 (265)
T 2bjv_A 21 QVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLN 64 (265)
T ss_dssp HHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEE
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEe
Confidence 3333344567899999999999987776654331 1234665553
No 198
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.60 E-value=3.9 Score=42.59 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
...+.+|.-+.|+|||..+-+++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999888877654
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.04 E-value=1.3 Score=48.74 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..+.+|.-+.|+|||..|-+++..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3578899999999999988887654
No 200
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.76 E-value=2.9 Score=45.13 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=26.5
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 309 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl 309 (1001)
.+++|.-++|+|||..|-+++..+ ..+++.|....+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l 72 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGEL 72 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHh
Confidence 467888999999999999888776 335565544433
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=79.18 E-value=2 Score=49.49 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 311 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~ 311 (1001)
..+.+|.-+.|+|||..|-+++..+ ...+++.|....++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVS 206 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHh
Confidence 4678899999999999988877654 133566655554443
No 202
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=78.59 E-value=0.41 Score=55.46 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred cccccccceeEeecCCCCC------cchhhHhhhhhhcCCCCeEEE
Q psy10448 741 YINLATADTVIIYDSDWNP------HNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP------~~d~QA~~RahRiGQ~k~V~V 780 (1001)
++|+..++.||.+|+.|++ ....|++||++|.|+...+.+
T Consensus 396 GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 396 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ----------------------------------------------
T ss_pred CCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 6999999999999999876 589999999999997765554
No 203
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.47 E-value=0.5 Score=50.37 Aligned_cols=38 Identities=5% Similarity=-0.045 Sum_probs=35.8
Q ss_pred ccchHHHHHHHhhhhccccccccCCChhhhhcccchHH
Q psy10448 941 LNQLEELLSDMKSDVSRLPATLARIPPVAQRLHMSERS 978 (1001)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1001)
-++.+.++|+|++++.||+.|+.|++.|++++.|++++
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks 41 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKS 41 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCC
Confidence 46889999999999999999999999999999999986
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=76.90 E-value=17 Score=39.89 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=27.9
Q ss_pred cHHHHHHH-HHHHHhh--cCCC--CeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 250 HAYQLEGI-NWLRYSW--GQNI--DTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 250 ~pyQ~egv-~wL~~~~--~~~~--g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
++.+.+.+ .++.... ..+. ..+|.-+.|+|||..+-+++..+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45555555 3333221 2223 588899999999999888776653
No 205
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.49 E-value=0.68 Score=54.33 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=17.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhh
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSR 768 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~R 768 (1001)
+||+..++.||++|+.|||....|++||
T Consensus 466 GiDip~v~~VI~~d~p~s~~~~~Qr~GR 493 (556)
T 4a2p_A 466 GIDIVQCNLVVLYEYSGNVTKMIQVRGR 493 (556)
T ss_dssp -------CEEEEETCCSCHHHHHHC---
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC
Confidence 6999999999999999999999998776
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.58 E-value=4.5 Score=43.68 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=28.0
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll 310 (1001)
..+.+.+|.-+.|+|||..+-+++..+ ..+++.|....++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELL 86 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHH
Confidence 456678999999999999888877653 2456555444443
No 207
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.53 E-value=2.5 Score=45.50 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.9
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
+.+|.-+.|.|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 589999999999999988887764
No 208
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.48 E-value=1.1 Score=58.03 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=37.9
Q ss_pred cccccccceeEeecC-CCCCcchhhHhhhhhhcCCCCeEEEEEEEeCC
Q psy10448 741 YINLATADTVIIYDS-DWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRN 787 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp-~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~ 787 (1001)
++|+..++.||+.++ .|+++...|+.||++|.|+...+ |.++..+
T Consensus 877 GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~--~ll~~~~ 922 (1151)
T 2eyq_A 877 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA--WLLTPHP 922 (1151)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEE--EEEECCG
T ss_pred eecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEE--EEEECCc
Confidence 699999999999999 69999999999999999976544 4455543
No 209
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.90 E-value=2.8 Score=47.96 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=32.9
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 314 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~ 314 (1001)
...+|.+|.-..|+|||..|-+++..+ ..|++.|....++..|.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGIVDKYI 256 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGTCCSSS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhhccccc
Confidence 345789999999999999999988765 34677776666654443
No 210
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.43 E-value=7.2 Score=41.12 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=20.6
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..+.+|.-++|+|||..|-+++..+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3468889999999999988887653
No 211
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=73.38 E-value=1.1 Score=46.05 Aligned_cols=39 Identities=10% Similarity=0.242 Sum_probs=35.9
Q ss_pred eccchHHHHHHHhhhhccccccccCCChhhhhcccchHH
Q psy10448 940 VLNQLEELLSDMKSDVSRLPATLARIPPVAQRLHMSERS 978 (1001)
Q Consensus 940 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1001)
|.++++.++++|++++.||+.|..|+..|++++.|.+++
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks 45 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKS 45 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCC
Confidence 789999999999999999999999999999999987764
No 212
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=72.70 E-value=0.98 Score=56.10 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=20.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhh
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSR 768 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~R 768 (1001)
+||+..++.||++|+.|||....|++||
T Consensus 707 GIDlp~v~~VI~yd~p~s~~~~iQr~GR 734 (797)
T 4a2q_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGR 734 (797)
T ss_dssp ----CCCSEEEEESCCSCHHHHHTC---
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC
Confidence 6999999999999999999999998877
No 213
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=72.65 E-value=2.2 Score=47.48 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=21.2
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
...+.+|.-+.|+|||..|-+++..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999988876543
No 214
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=72.32 E-value=1 Score=52.02 Aligned_cols=131 Identities=16% Similarity=0.092 Sum_probs=74.7
Q ss_pred hcCCCCeEEEcCCCCCHHHHHH-HHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhc
Q psy10448 264 WGQNIDTILADEMGLGKTIQTI-TFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKDCRIVLRD 341 (1001)
Q Consensus 264 ~~~~~g~ILADemGLGKTiqaI-a~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~ 341 (1001)
+..+.++|++.+||+|||.+++ .++..+... ...+||++|. .|+.|+.+++. +..+....+...
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~----g~~v~~~~~~~~------- 83 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRVVAAEMAEALR----GLPVRYQTSAVQ------- 83 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHHHHHHHHHHTT----TSCEEECC-----------
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHHhc----CceEeEEecccc-------
Confidence 3467789999999999999954 444444432 2358999994 56788888775 222211110000
Q ss_pred cccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-hhcCCceeEEEEcCccccCCcccHHH----HHHhccccc
Q psy10448 342 HDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-LLGSIEWAVLVVDEAHRLKSNQSKFF----KFLSGYSIQ 416 (1001)
Q Consensus 342 ~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-~L~~~~w~~VIiDEAH~lKN~~Sk~~----~al~~l~~~ 416 (1001)
. .......+.+++...+..... ...-.++.+|||||||++. ..+... ..+......
T Consensus 84 -----------~-------~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~ 144 (459)
T 2z83_A 84 -----------R-------EHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEA 144 (459)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSC
T ss_pred -----------c-------CCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCc
Confidence 0 001122356667776654332 1222367899999999852 111111 111222456
Q ss_pred ceEeeecCCCC
Q psy10448 417 NKLLLTGTPLQ 427 (1001)
Q Consensus 417 ~rllLTGTPlq 427 (1001)
..+++||||-.
T Consensus 145 ~~il~SAT~~~ 155 (459)
T 2z83_A 145 AAIFMTATPPG 155 (459)
T ss_dssp EEEEECSSCTT
T ss_pred cEEEEEcCCCc
Confidence 78999999953
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.16 E-value=3.4 Score=47.02 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=34.6
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E 316 (1001)
...+|.+|.-..|+|||..|-+++..+ ..+++.|....++..|.-|
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGGCCSSSSH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHhhhccCch
Confidence 345789999999999999999988765 3467877777666555433
No 216
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=71.90 E-value=5.1 Score=48.54 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=48.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc-CCCCCcEEEEeCcch-HHHHHHHHHHHC
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLST-IINWEREFETWA 321 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~-~~~~~p~LIV~P~sl-l~qW~~E~~k~~ 321 (1001)
.|.|.|.++|.. ..+..++....|+|||.+.+.-+.++... +.....+|+|+.+.- ...-.+.+.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 578899999952 34567778899999999999888888765 333345999997544 444555566554
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=71.46 E-value=5.2 Score=46.54 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=25.4
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
....+.+|.-+.|+|||..|-++...+ ..|++.|.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEE
Confidence 445678999999999999888775543 34565554
No 218
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=70.96 E-value=1.3 Score=56.12 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.7
Q ss_pred cccccccceeEeecCCCCCcchhhHhhh
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSR 768 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~R 768 (1001)
+||+..++.||++|+.|||....|++||
T Consensus 707 GIDlp~v~~VI~yD~p~s~~~~iQr~GR 734 (936)
T 4a2w_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGR 734 (936)
T ss_dssp ---CCCCSEEEEESCCSCSHHHHCC---
T ss_pred CCcchhCCEEEEeCCCCCHHHHHHhcCC
Confidence 6999999999999999999999998887
No 219
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.24 E-value=17 Score=42.46 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
.+.+|.-+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999988887665
No 220
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.57 E-value=16 Score=39.82 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhh-cCC--CCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSW-GQN--IDTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 253 Q~egv~wL~~~~-~~~--~g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
|.+.+..+.... ..+ .+.+|.-+.|+|||..+-+++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 445555555544 332 2478899999999998888777664
No 221
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=68.92 E-value=1.4 Score=53.44 Aligned_cols=64 Identities=16% Similarity=0.020 Sum_probs=46.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhc
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 808 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv 808 (1001)
+||+..++.||.+|+.|||....|++|||+|-| ..++.+...++.+.........+..+....+
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAI 540 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999986655 4444456667755554444444444444444
No 222
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=68.80 E-value=5 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=19.6
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
.+.||.-+.|+|||..+-++...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999887776553
No 223
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.34 E-value=11 Score=41.21 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHh---hcCCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 250 HAYQLEGINWLRYS---WGQNIDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~---~~~~~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
++.+++.+.-.+.. -..+...+|.-+.|+|||..+-.++..+...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55566655322221 1234568889999999999988887766544
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.67 E-value=27 Score=42.71 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4557899999999999998888876643
No 225
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=66.06 E-value=66 Score=34.93 Aligned_cols=46 Identities=13% Similarity=-0.040 Sum_probs=32.3
Q ss_pred cHHHHHHHH-HHHHhh--cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy10448 250 HAYQLEGIN-WLRYSW--GQNIDTILADEMGLGKTIQTITFLYSLFKEG 295 (1001)
Q Consensus 250 ~pyQ~egv~-wL~~~~--~~~~g~ILADemGLGKTiqaIa~l~~l~~~~ 295 (1001)
|+-|...+. +|.... ..+.+.+|.-.+|+|||.++-.++..+....
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 455666664 444333 2344577899999999999999998886543
No 226
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=63.49 E-value=8.5 Score=44.63 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCCeEEEEe
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYV 330 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~vv~y~ 330 (1001)
...|.--+|.|||+.+.+++.. ..+|+|||||. ....+|..++..|+|.. |..|.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 4577888999999987776643 25689999994 56689999999998765 44443
No 227
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.73 E-value=1.7 Score=49.68 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccc
Q psy10448 267 NIDTILADEMGLGKTIQTIT-FLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDI 344 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa-~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~ 344 (1001)
+.++|++.++|+|||++++. ++..+...+ ..+||++|. .|..|+.+.+. +..+..+.|....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g---~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~--------- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR---LRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS--------- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT----TSCEEEC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc---------
Confidence 56789999999999999844 443544432 358999995 45577766654 4444433332110
Q ss_pred ccccccccCCCCccccCCCccccEEEecHHHHHhhHh-hhcCCceeEEEEcCccccCCccc-HHHHHHhcc---cccceE
Q psy10448 345 SWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-LLGSIEWAVLVVDEAHRLKSNQS-KFFKFLSGY---SIQNKL 419 (1001)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-~L~~~~w~~VIiDEAH~lKN~~S-k~~~al~~l---~~~~rl 419 (1001)
.......+.+++...+..... ...-.++.+|||||||++ +..+ .....+..+ ...+.+
T Consensus 66 ----------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l 128 (431)
T 2v6i_A 66 ----------------ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAI 128 (431)
T ss_dssp -------------------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred ----------------cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEE
Confidence 001112245567776644322 212345789999999998 3222 222333332 356779
Q ss_pred eeecCCCC
Q psy10448 420 LLTGTPLQ 427 (1001)
Q Consensus 420 lLTGTPlq 427 (1001)
+|||||..
T Consensus 129 ~~SAT~~~ 136 (431)
T 2v6i_A 129 FMTATPPG 136 (431)
T ss_dssp EEESSCTT
T ss_pred EEeCCCCc
Confidence 99999964
No 228
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=61.51 E-value=4.8 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=21.0
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
...+.+|.-+.|+|||..+-+++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35678899999999999888776543
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=61.33 E-value=14 Score=36.70 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKE 294 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~ 294 (1001)
.+.+|.-+.|+|||..+.+++..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678899999999999998888776543
No 230
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.11 E-value=23 Score=44.11 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3457899999999999999888877654
No 231
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=58.96 E-value=18 Score=44.08 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CCCCcEEEEeCcchHH-HHHHHHHHH
Q psy10448 248 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLSTII-NWEREFETW 320 (1001)
Q Consensus 248 ~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~-~~~~p~LIV~P~sll~-qW~~E~~k~ 320 (1001)
.|-|.|.++|.. ..+..++-...|+|||.+.+.-+.+++... .....+|+|+.+.... .-.+.+...
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 588999999952 345677777999999999999888888753 2334599999865443 333334443
No 232
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=58.70 E-value=15 Score=39.61 Aligned_cols=39 Identities=15% Similarity=-0.022 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 249 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 249 L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
=|+.+++.+.-+.. .+...+|.-+.|.|||..+-.++..
T Consensus 16 gR~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 16 DREEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SCHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHHHH
Confidence 45666666643322 2467888999999999877766644
No 233
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=57.14 E-value=21 Score=34.70 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHhh-----cCCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy10448 250 HAYQLEGINWLRYSW-----GQNIDTILADEMGLGKTIQTITFLYSLFK 293 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~-----~~~~g~ILADemGLGKTiqaIa~l~~l~~ 293 (1001)
.+.|.+++..+.... ..+.+.+|.-+.|.|||..+-+++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357888887775433 23566788999999999999888877753
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=57.10 E-value=28 Score=39.66 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=25.2
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 307 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~ 307 (1001)
.+++-..|.|||.++..++..+...+ .++.||-+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~ 135 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADV 135 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCc
Confidence 56677899999999999888876543 3434444443
No 235
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=54.50 E-value=18 Score=41.88 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..|.+|.-++|+|||..+-+++..+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999888777643
No 236
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=54.34 E-value=27 Score=39.94 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=24.4
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
.+++-..|.|||.++..++..+...+ .+ +++|+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G--~k-Vllv~ 135 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG--YK-VGVVC 135 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CC-EEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCC--Ce-EEEEe
Confidence 56677899999999999998876543 34 44444
No 237
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.05 E-value=7.3 Score=44.53 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=35.8
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 317 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 317 (1001)
...+|++|.-.+|+|||..|-+++..+ ..|++.|....++..|..+-
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccchH
Confidence 345689999999999999999888765 34688887777766554443
No 238
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.60 E-value=1.6e+02 Score=31.29 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 250 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
|+.+++.+ .. +.. ...+|.-+.|.|||..+-.++..+
T Consensus 18 R~~el~~L---~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKL---KG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHH---HH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHH---HH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 55565554 33 434 568889999999999887777654
No 239
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=51.65 E-value=5.6 Score=45.66 Aligned_cols=127 Identities=20% Similarity=0.169 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCHHHHHH-HHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccc
Q psy10448 267 NIDTILADEMGLGKTIQTI-TFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDI 344 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaI-a~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~ 344 (1001)
+...|++.+||+|||.+++ .++..+...+ ..+||++|. .|..|+.+++. +..+. |......
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~---~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~--------- 81 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRR---LRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVK--------- 81 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCS---------
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcC---CcEEEECCCHHHHHHHHHHhc----Cceee-eeecccc---------
Confidence 3345888899999999744 4444444322 358999994 56677877764 22221 1111000
Q ss_pred ccccccccCCCCccccCCCccccEEEecHHHHHhhHhhh-cCCceeEEEEcCccccCCcccHHHH-HHhc---ccccceE
Q psy10448 345 SWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALL-GSIEWAVLVVDEAHRLKSNQSKFFK-FLSG---YSIQNKL 419 (1001)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L-~~~~w~~VIiDEAH~lKN~~Sk~~~-al~~---l~~~~rl 419 (1001)
. .......+.++|.+.+....... .-.++.+|||||||++ +....... .+.. ......+
T Consensus 82 --------~-------~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i 145 (451)
T 2jlq_A 82 --------S-------DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAI 145 (451)
T ss_dssp --------C-------CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred --------c-------cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEE
Confidence 0 11223458888888876554322 2235789999999987 33222211 1111 1245679
Q ss_pred eeecCCC
Q psy10448 420 LLTGTPL 426 (1001)
Q Consensus 420 lLTGTPl 426 (1001)
+|||||-
T Consensus 146 ~~SAT~~ 152 (451)
T 2jlq_A 146 FMTATPP 152 (451)
T ss_dssp EECSSCT
T ss_pred EEccCCC
Confidence 9999994
No 240
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=50.63 E-value=5.1 Score=48.61 Aligned_cols=122 Identities=12% Similarity=0.081 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcccc
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDI 344 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~ 344 (1001)
.++.++++.++|.|||..++..+. .. +..+|++|. .+..|+.+.+... +..+....|.... .+
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~---~~----~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~--iv----- 217 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYF---SA----KSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERV--TV----- 217 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH---HS----SSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEE--CC-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH---hc----CCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeE--Ee-----
Confidence 667789999999999995554432 22 124888994 5668888888875 5566666665322 00
Q ss_pred ccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCcc--cHHHHHHhccc--ccceEe
Q psy10448 345 SWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQ--SKFFKFLSGYS--IQNKLL 420 (1001)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~--Sk~~~al~~l~--~~~rll 420 (1001)
.......+++++|.+.+. ....+++|||||||++.+.. ......+..+. ..+.++
T Consensus 218 ---------------~TpGr~~~il~~T~e~~~------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~ 276 (677)
T 3rc3_A 218 ---------------QPNGKQASHVSCTVEMCS------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCG 276 (677)
T ss_dssp ---------------STTCCCCSEEEEEGGGCC------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEE
T ss_pred ---------------cCCCcccceeEecHhHhh------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEe
Confidence 011123567888875543 12457999999999985432 23334455454 223455
Q ss_pred eecC
Q psy10448 421 LTGT 424 (1001)
Q Consensus 421 LTGT 424 (1001)
+|+|
T Consensus 277 ~SAT 280 (677)
T 3rc3_A 277 EPAA 280 (677)
T ss_dssp CGGG
T ss_pred ccch
Confidence 6666
No 241
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=49.74 E-value=5.4 Score=48.27 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=67.8
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCC----CeEEEEEc--------cCCHHHHHHHHHHhcC-CCCCcEEEEEeccccccc
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEG----YKYERIDG--------NITGSMRQESIDRFNA-PGASQFVFLLSTRSGGLG 704 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~g----i~~~ridG--------~~s~~eRq~~Id~Fn~-~~~~~~v~LlStragg~G 704 (1001)
..++|||+++..+++.|.+.|...| +++..++| +++..+|++++++|++ +... +|++|.++++|
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~---vLVaT~v~~~G 474 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN---ILIATSVADEG 474 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS---CSEEEESSCCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc---EEEEechhhcC
Confidence 3467799999999999999999988 89999954 9999999999999997 5544 79999999999
Q ss_pred cccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEEEEEE
Q psy10448 705 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFV 784 (1001)
Q Consensus 705 INL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~Vyrlv 784 (1001)
||++.+++||+||+|||+..++| ++|| +| .++..+|.|+
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Q-------------------------------------r~GR-GR---~~~g~~~~l~ 513 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQ-------------------------------------TRGR-GR---ARGSKCFLLT 513 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC--------------------------------------------------CCCEEEEEE
T ss_pred CcCccCCEEEEeCCCCCHHHHHH-------------------------------------hhcc-Cc---CCCceEEEEe
Confidence 99999999999999999995555 4445 44 4677889999
Q ss_pred eCCCHHHH
Q psy10448 785 TRNSVEER 792 (1001)
Q Consensus 785 t~~TiEE~ 792 (1001)
+.+++++.
T Consensus 514 ~~~~~~~~ 521 (696)
T 2ykg_A 514 SNAGVIEK 521 (696)
T ss_dssp SCHHHHHH
T ss_pred cCCCHHHH
Confidence 99888664
No 242
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=49.72 E-value=12 Score=31.03 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=21.0
Q ss_pred eeeeEEEeecccCCCcEEEEEeCCCC
Q psy10448 140 LIANRVINSKTLRDGSTIYLVKWRDL 165 (1001)
Q Consensus 140 ~~~~ri~~~~~~~~~~~~~lvKW~~L 165 (1001)
-.|++|+......+|...||+||++=
T Consensus 11 ~~Ve~I~g~~~~~~g~L~flikwk~~ 36 (68)
T 1e0b_A 11 DLVSSIDTIERKDDGTLEIYLTWKNG 36 (68)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEETTS
T ss_pred hheeEEEEEEECCCCEEEEEEEECCC
Confidence 35888988766578899999999954
No 243
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=49.23 E-value=25 Score=45.65 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=44.1
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC---CCCcEEEEeCcchH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH---CKGPFLVSAPLSTI 310 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~---~~~p~LIV~P~sll 310 (1001)
.+.+|.+-|..+|. ..+.+.++....|+|||.+.+.-+..++..+. ....+|||+++...
T Consensus 7 ~~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp ---CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 35689999999984 24667889999999999999887777776643 23458999996443
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=48.02 E-value=52 Score=35.23 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=23.0
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
-.++.-..|.|||.++..++..+..... . .++++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~-~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH-K-KIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC-C-CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-C-EEEEEe
Confidence 3455667899999998888877654221 2 355554
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=47.56 E-value=27 Score=37.71 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH-HcC
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLF-KEG 295 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~-~~~ 295 (1001)
+.+.+|.-++|+|||..+.+++..+. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 56789999999999999999988877 543
No 246
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.62 E-value=10 Score=43.30 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=33.6
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 314 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~ 314 (1001)
...+|.+|.-.+|+|||..|-+++..+ ..|++.|....++..|.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhcccc
Confidence 345688999999999999999988765 34677777766665543
No 247
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.97 E-value=10 Score=43.59 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=35.7
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 317 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 317 (1001)
...+|.+|.-..|+|||..|-+++..+ ..+++.|....++..|..|-
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCCCSSSHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHhhcccCCHH
Confidence 456789999999999999999888765 34678777777766554443
No 248
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=45.00 E-value=16 Score=44.94 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.7
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
...|.+|.-..|+|||..|-+++..+ ..|++.|....++..|
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 551 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccc
Confidence 34578999999999999888777543 3456666555555444
No 249
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=44.20 E-value=34 Score=44.11 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=37.7
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHC
Q psy10448 272 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA 321 (1001)
Q Consensus 272 LADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 321 (1001)
+--..|+|||.+.+.-+.+++..+....++|+|||....-+=+..+....
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTP 55 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhh
Confidence 33457999999999999998887665567999999887666445554443
No 250
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=44.01 E-value=8.5 Score=43.97 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=72.7
Q ss_pred cCCCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhcc
Q psy10448 265 GQNIDTILADEMGLGKTIQTIT-FLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKDCRIVLRDH 342 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa-~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~ 342 (1001)
..++++|+..++|+|||++++. ++..+...+ ..+||++|. .|..|+.+.+..+ .+. +.+..-.
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~---~~~lil~Ptr~La~Q~~~~l~~~----~v~-~~~~~~~------- 70 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARRR---LRTLVLAPTRVVLSEMKEAFHGL----DVK-FHTQAFS------- 70 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTTTS----CEE-EESSCCC-------
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC---CeEEEEcchHHHHHHHHHHHhcC----CeE-Eecccce-------
Confidence 4678899999999999999744 444344332 348999994 5668888877643 222 2111100
Q ss_pred ccccccccccCCCCccccCCCccccEEEecHHHHHhhH-hhhcCCceeEEEEcCccccCCcccHH-HHHHhc---ccccc
Q psy10448 343 DISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV-ALLGSIEWAVLVVDEAHRLKSNQSKF-FKFLSG---YSIQN 417 (1001)
Q Consensus 343 e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~-~~L~~~~w~~VIiDEAH~lKN~~Sk~-~~al~~---l~~~~ 417 (1001)
.. . ....-+-+.+...+.... ....-.++.+||+||||++ +..... ...+.. .....
T Consensus 71 ---------~v-------~-Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 71 ---------AH-------G-SGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp ---------CC-------C-CSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred ---------ec-------c-CCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 00 0 001112233444443221 1112245789999999998 322211 111111 23467
Q ss_pred eEeeecCCCCC
Q psy10448 418 KLLLTGTPLQN 428 (1001)
Q Consensus 418 rllLTGTPlqN 428 (1001)
.+++||||..+
T Consensus 133 ~l~~SAT~~~~ 143 (440)
T 1yks_A 133 TILMTATPPGT 143 (440)
T ss_dssp EEEECSSCTTC
T ss_pred EEEEeCCCCch
Confidence 89999999654
No 251
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=42.06 E-value=17 Score=41.72 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=31.1
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
.+.+.+|.-++|+|||..|-+++..+-. ..+++.|....+...|
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~----~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS----KVPFCPMVGSEVYSTE 105 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT----TSCEEEEEGGGGCCSS
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC----CceEEEEeHHHHHHHh
Confidence 3457899999999999999998877521 2456666655554333
No 252
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=41.90 E-value=67 Score=39.46 Aligned_cols=75 Identities=9% Similarity=0.006 Sum_probs=51.8
Q ss_pred EEeccHHH----HHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecC
Q psy10448 643 EFYNMTKM----LDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDS 718 (1001)
Q Consensus 643 IFsq~~~~----ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~ 718 (1001)
|.+..... .+.+..++...|+++..++|+++..+|...++....+... +++.+.......+++...+.||+=+.
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~--IvVgT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID--VVIGTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC--EEEECTTHHHHCCCCSCCCEEEEESC
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEECHHHHhhhhhccCCceEEeccc
Confidence 66665544 3444555555689999999999999999999999876555 34444444445567777777776444
Q ss_pred C
Q psy10448 719 D 719 (1001)
Q Consensus 719 ~ 719 (1001)
+
T Consensus 500 H 500 (780)
T 1gm5_A 500 H 500 (780)
T ss_dssp C
T ss_pred c
Confidence 4
No 253
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=39.96 E-value=43 Score=40.22 Aligned_cols=54 Identities=17% Similarity=0.072 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc
Q psy10448 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 308 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s 308 (1001)
..+..-|.+++..+.... . +..+|..+-|-|||..+-.++..+. +.++|.+|..
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~-~~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-P-GVAAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-S-EEEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhh-h-CeEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 367788999997765432 2 2356677799999955444444432 1258888843
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=39.26 E-value=34 Score=37.69 Aligned_cols=44 Identities=11% Similarity=-0.011 Sum_probs=31.6
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 312 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~q 312 (1001)
.+.-.+|+-+.|.|||..++.++......+ ++++++.-.....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCcCH
Confidence 455578899999999999999988776543 45777765443333
No 255
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=39.11 E-value=22 Score=33.38 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=31.1
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHHHC
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA 321 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 321 (1001)
....+.+|.-+.|+|||..|-++.... . |++.|-...+...|...+-...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~~~~~~~~~~~~~~~~a 74 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG------T-PWVSPARVEYLIDMPMELLQKA 74 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT------S-CEECCSSTTHHHHCHHHHHHHT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC------C-CeEEechhhCChHhhhhHHHhC
Confidence 466789999999999998766544321 1 5655544555555544443333
No 256
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=39.06 E-value=50 Score=35.58 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHH
Q psy10448 257 INWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 317 (1001)
Q Consensus 257 v~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 317 (1001)
++.+...+..+.-.+|+-..|.|||.-++.++......+ .++|++.---...+....+
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~ 115 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRL 115 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHH
Confidence 333443455666689999999999999998887765443 5788887654444444444
No 257
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=38.66 E-value=11 Score=40.06 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=18.9
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 773 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiG 773 (1001)
+|||++|++||++||+| +-..-+=|++|++
T Consensus 178 Glnl~~a~~VI~~d~~w---np~~~~Q~~gR~~ 207 (271)
T 1z5z_A 178 GINLTSANRVIHFDRWW---NPAVEDQATDRVY 207 (271)
T ss_dssp CCCCTTCSEEEECSCCS---CTTTC--------
T ss_pred CcCcccCCEEEEECCCC---ChhHHHHHHHhcc
Confidence 69999999999999998 5555544544443
No 258
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=37.98 E-value=42 Score=31.40 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=21.0
Q ss_pred hcCCCCeEEEcCCCCCHHHHHHHHHH
Q psy10448 264 WGQNIDTILADEMGLGKTIQTITFLY 289 (1001)
Q Consensus 264 ~~~~~g~ILADemGLGKTiqaIa~l~ 289 (1001)
-....+.+|.-+.|+|||..|-++..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999988776543
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=36.15 E-value=52 Score=33.34 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=35.1
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 319 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 319 (1001)
.+.-.+++-+.|.|||.-++.++....... ..+++++.-.....+..+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHHH
Confidence 445579999999999999998877644332 2357887765444555444443
No 260
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=35.82 E-value=11 Score=45.74 Aligned_cols=147 Identities=17% Similarity=0.133 Sum_probs=79.3
Q ss_pred cccHHHH-----HHHHHHH--HhhcCCCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHH
Q psy10448 248 QLHAYQL-----EGINWLR--YSWGQNIDTILADEMGLGKTIQTIT-FLYSLFKEGHCKGPFLVSAPL-STIINWEREFE 318 (1001)
Q Consensus 248 ~L~pyQ~-----egv~wL~--~~~~~~~g~ILADemGLGKTiqaIa-~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~ 318 (1001)
.+.+.|. .++.-++ .....+.++|+..++|+|||++++. ++..+... ...+||++|. .|..|+.+.+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~---~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK---RLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEccHHHHHHHHHHHHh
Confidence 4556666 6653222 2234788899999999999999644 44444432 2348999995 56688888776
Q ss_pred HHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhH-hhhcCCceeEEEEcCcc
Q psy10448 319 TWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDV-ALLGSIEWAVLVVDEAH 397 (1001)
Q Consensus 319 k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~-~~L~~~~w~~VIiDEAH 397 (1001)
.+. +. +....-. .. .....-+-+.+...+.... ....-.++.+|||||||
T Consensus 292 ~~~----i~-~~~~~l~----------------~v--------~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 292 GLP----VR-YLTPAVQ----------------RE--------HSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAH 342 (673)
T ss_dssp TSC----CE-ECCC-------------------CC--------CCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTT
T ss_pred cCC----ee-eeccccc----------------cc--------CCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCc
Confidence 542 11 1110000 00 0111123344555443322 11123467899999999
Q ss_pred ccCCcccHHHHHHhcc---cccceEeeecCCC
Q psy10448 398 RLKSNQSKFFKFLSGY---SIQNKLLLTGTPL 426 (1001)
Q Consensus 398 ~lKN~~Sk~~~al~~l---~~~~rllLTGTPl 426 (1001)
++.-........+..+ ...+.++|||||.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~ 374 (673)
T 2wv9_A 343 FTDPASIAARGYIATRVEAGEAAAIFMTATPP 374 (673)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred ccCccHHHHHHHHHHhccccCCcEEEEcCCCC
Confidence 9821111122222222 3467899999995
No 261
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=35.30 E-value=39 Score=36.85 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHHHHhhcCC----CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 247 MQLHAYQLEGINWLRYSWGQN----IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 247 ~~L~pyQ~egv~wL~~~~~~~----~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
+.-.+.+.+.+..+......+ .+.+|.-+.|+|||..+-+++..+. ...|++.+..
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~ 105 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAG 105 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEG
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccc
Confidence 344566777766665444333 4688999999999999998887763 2235555543
No 262
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=35.25 E-value=7.4 Score=48.01 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHCCCCeEEE
Q psy10448 250 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAPDFYVVT 328 (1001)
Q Consensus 250 ~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~~~vv~ 328 (1001)
.+.|.+.+..++ ..+..+++..++|.|||.+.-.++..........+.++|++|.. +..|+...+..... ..+..
T Consensus 95 ~~~q~~~i~~~l---~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~-~~v~~ 170 (773)
T 2xau_A 95 VHAQRDEFLKLY---QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD-VKLGE 170 (773)
T ss_dssp GGGGHHHHHHHH---HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT-CCBTT
T ss_pred hHHHHHHHHHHH---hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC-Cchhh
Confidence 334666653332 35567999999999999954444322211111122388999954 55677776765542 11111
Q ss_pred EeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-hhcCCceeEEEEcCccc-cCCccc--
Q psy10448 329 YVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-LLGSIEWAVLVVDEAHR-LKSNQS-- 404 (1001)
Q Consensus 329 y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-~L~~~~w~~VIiDEAH~-lKN~~S-- 404 (1001)
..|.. ++ +.. ......+|+++|.+.+.+... .....++.+|||||+|. .-+...
T Consensus 171 ~vG~~-----i~-----~~~------------~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~ 228 (773)
T 2xau_A 171 EVGYS-----IR-----FEN------------KTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILM 228 (773)
T ss_dssp TEEEE-----ET-----TEE------------ECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHH
T ss_pred eecce-----ec-----ccc------------ccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHH
Confidence 11100 00 000 112356799999998876532 22234689999999995 222111
Q ss_pred HHHHHHhcc-cccceEeeecCC
Q psy10448 405 KFFKFLSGY-SIQNKLLLTGTP 425 (1001)
Q Consensus 405 k~~~al~~l-~~~~rllLTGTP 425 (1001)
...+.+... .....+++|||+
T Consensus 229 ~~l~~l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 229 GLLKQVVKRRPDLKIIIMSATL 250 (773)
T ss_dssp HHHHHHHHHCTTCEEEEEESCS
T ss_pred HHHHHHHHhCCCceEEEEeccc
Confidence 122222222 344679999998
No 263
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=35.22 E-value=1.1e+02 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=43.9
Q ss_pred eEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCC
Q psy10448 641 SIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGA 689 (1001)
Q Consensus 641 vIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~ 689 (1001)
.++||.-+..|..|...+...|+.++.+.+......|...++.|...+.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 4589999999999999999999999999999999999999999987543
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=34.76 E-value=26 Score=43.21 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
.+|++|.-..|+|||..|=+++..+ ..+++.|....++..|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKL 278 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHHHSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHhhccc
Confidence 4578999999999999887766432 3455555444554433
No 265
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=33.89 E-value=27 Score=35.98 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGH 296 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~ 296 (1001)
.|-+-++|.|||+.+++++..+.+.+.
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 456788999999999999999987764
No 266
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=33.86 E-value=26 Score=36.58 Aligned_cols=27 Identities=22% Similarity=0.022 Sum_probs=23.3
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGH 296 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~ 296 (1001)
.|.+-++|.|||+.+++++..+...+.
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 466889999999999999999987764
No 267
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=33.81 E-value=48 Score=34.93 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
...+.+|.-++|+|||..+-+++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999888887665
No 268
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=33.65 E-value=49 Score=37.74 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHH
Q psy10448 256 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 256 gv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E 316 (1001)
+++.+...+..+.-.||+-.+|.|||.-++.++...... ..++|++.---...+....
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R 243 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKR 243 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHH
Confidence 444555445566668999999999999999998887665 3578888764333344333
No 269
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=33.54 E-value=75 Score=34.80 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=38.2
Q ss_pred HHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHH
Q psy10448 259 WLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 259 wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E 316 (1001)
.+...+..+.-.||+-..|.|||.-++.++..... ...+++++..--...+....
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHH
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHH
Confidence 33334455666899999999999999998887765 24578888764444444333
No 270
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=33.48 E-value=1e+02 Score=33.61 Aligned_cols=93 Identities=9% Similarity=-0.101 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhh
Q psy10448 649 KMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQA 728 (1001)
Q Consensus 649 ~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQr 728 (1001)
.+|+.|-..|...|.++..+...+. --.+++.|-....-.+ .-+.-..+..=......+..|++-+.
T Consensus 112 ~~L~~LL~~l~~~~~kVLIfsq~t~---~LDilE~~l~~~~~~y-~RlDG~~~~~~~k~~~~~~~i~Llts--------- 178 (328)
T 3hgt_A 112 SVLRDLINLVQEYETETAIVCRPGR---TMDLLEALLLGNKVHI-KRYDGHSIKSAAAANDFSCTVHLFSS--------- 178 (328)
T ss_dssp HHHHHHHHHHTTSCEEEEEEECSTH---HHHHHHHHHTTSSCEE-EESSSCCC-------CCSEEEEEEES---------
T ss_pred HHHHHHHHHHHhCCCEEEEEECChh---HHHHHHHHHhcCCCce-EeCCCCchhhhhhcccCCceEEEEEC---------
Confidence 3466666677778988888877543 4567787766433221 11111111110011112333333211
Q ss_pred hhhhhhccCccccccccccceeEeecCCC
Q psy10448 729 FSRAHRIGQQNKYINLATADTVIIYDSDW 757 (1001)
Q Consensus 729 iGRi~RiGq~~~~LNL~~A~~Vil~Dp~W 757 (1001)
.| =.|-....+||++|+.||+|||+|
T Consensus 179 ag---~~gin~~~~nl~~aD~VI~~Dsdw 204 (328)
T 3hgt_A 179 EG---INFTKYPIKSKARFDMLICLDTTV 204 (328)
T ss_dssp SC---CCTTTSCCCCCSCCSEEEECSTTC
T ss_pred CC---CCCcCcccccCCCCCEEEEECCCC
Confidence 00 011111235799999999999986
No 271
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=32.93 E-value=1.4e+02 Score=32.04 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=29.7
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHc---CCCCCcEEEEeCcc
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKE---GHCKGPFLVSAPLS 308 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~---~~~~~p~LIV~P~s 308 (1001)
..+.-.+|+-+.|.|||..++.++...... +...++++.|.-..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 345557889999999999999888764322 11134577776543
No 272
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=32.06 E-value=78 Score=35.89 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHH
Q psy10448 256 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 317 (1001)
Q Consensus 256 gv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 317 (1001)
+++.+...+..+.-.+|+-..|.|||.-++.++....... ..|++++..-....++...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSCHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHH
Confidence 3444444455666689999999999999999888776532 34688887654445555443
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=31.73 E-value=20 Score=38.72 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=23.3
Q ss_pred HhhcCCCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 262 YSWGQNIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 262 ~~~~~~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
.....+.+.+|..+.|+|||..+-++...+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 333456789999999999999888776544
No 274
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=31.63 E-value=13 Score=44.51 Aligned_cols=131 Identities=19% Similarity=0.136 Sum_probs=78.6
Q ss_pred hcCCCCeEEEcCCCCCHHHHH-HHHHHHHHHcCCCCCcEEEEeCc-chHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhc
Q psy10448 264 WGQNIDTILADEMGLGKTIQT-ITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKDCRIVLRD 341 (1001)
Q Consensus 264 ~~~~~g~ILADemGLGKTiqa-Ia~l~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~ 341 (1001)
...++++|++.++|+|||.+. +.++..+... ...+||++|. .|..|+.+++. ...+. |.+....
T Consensus 183 l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~---~~~vLvl~PtreLa~Qi~~~l~----~~~v~-~~~~~l~------ 248 (618)
T 2whx_A 183 FRKKRLTIMDLHPGAGKTKRILPSIVREALKR---RLRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVK------ 248 (618)
T ss_dssp GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTSS------
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEcChHHHHHHHHHHhc----CCcee-Eecccce------
Confidence 347889999999999999995 5566555542 2358999994 56677777765 22222 3221100
Q ss_pred cccccccccccCCCCccccCCCccccEEEecHHHHHhhHh-hhcCCceeEEEEcCccccCCccc--HHHHHHhcc--ccc
Q psy10448 342 HDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVA-LLGSIEWAVLVVDEAHRLKSNQS--KFFKFLSGY--SIQ 416 (1001)
Q Consensus 342 ~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~-~L~~~~w~~VIiDEAH~lKN~~S--k~~~al~~l--~~~ 416 (1001)
........+.++++..+..... ...-.++++|||||||++ +... .+...+..+ ...
T Consensus 249 ------------------~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~ 309 (618)
T 2whx_A 249 ------------------SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEA 309 (618)
T ss_dssp ------------------CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSC
T ss_pred ------------------eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCc
Confidence 0112233466778877765332 212345789999999998 3221 111222222 345
Q ss_pred ceEeeecCCCC
Q psy10448 417 NKLLLTGTPLQ 427 (1001)
Q Consensus 417 ~rllLTGTPlq 427 (1001)
..+++||||-.
T Consensus 310 q~il~SAT~~~ 320 (618)
T 2whx_A 310 AAIFMTATPPG 320 (618)
T ss_dssp EEEEECSSCTT
T ss_pred cEEEEECCCch
Confidence 67999999843
No 275
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=31.51 E-value=54 Score=30.33 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhc
Q psy10448 651 LDILEDYLDGEGYKYERIDGNITGSMRQESIDRFN 685 (1001)
Q Consensus 651 ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn 685 (1001)
...+..+|..+|+.|..+|=++..+.|+.++++.+
T Consensus 19 c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 36788999999999999999999999999999984
No 276
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=31.32 E-value=15 Score=42.43 Aligned_cols=14 Identities=50% Similarity=0.598 Sum_probs=13.1
Q ss_pred hhhhhhhhccCccc
Q psy10448 727 QAFSRAHRIGQQNK 740 (1001)
Q Consensus 727 QriGRi~RiGq~~~ 740 (1001)
||+||++|+||++.
T Consensus 430 Q~~gR~~R~Gq~~~ 443 (500)
T 1z63_A 430 QATDRVYRIGQTRN 443 (500)
T ss_dssp HHHHTTTTTTTTSC
T ss_pred HHHHHHHHcCCCCe
Confidence 99999999999876
No 277
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=31.06 E-value=30 Score=36.26 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.7
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHC 297 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~ 297 (1001)
.|-+-++|.|||+.+++++..+.+.+..
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~~ 57 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGID 57 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCe
Confidence 4568899999999999999999887643
No 278
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=30.43 E-value=1.3e+02 Score=34.71 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=19.3
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
..|.+|.-+.|+|||..+=+++..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999987776654
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=30.18 E-value=54 Score=35.89 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
...+.+|.-++|+|||..|-++...+ ..|++.+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEech
Confidence 44578999999999999888877655 356665543
No 280
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=28.97 E-value=24 Score=43.45 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=83.8
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 320 (1001)
.|+.++|-|..|+--|. .++ |....||.|||+.++.-+...... ...++||||+.-+ .+|...+.++
T Consensus 80 lG~~pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HSCCCCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 46688999999987665 443 889999999999877655422112 2248999997655 3588888888
Q ss_pred CCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHH-----HhhH----hhhcCCceeEE
Q psy10448 321 APDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELI-----TNDV----ALLGSIEWAVL 391 (1001)
Q Consensus 321 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l-----~~d~----~~L~~~~w~~V 391 (1001)
. ++.+.+..|........ ....+||++.|...+ .... ..+......++
T Consensus 151 l-gl~v~~i~gg~~~~~r~----------------------~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~l 207 (844)
T 1tf5_A 151 L-GLTVGLNLNSMSKDEKR----------------------EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFA 207 (844)
T ss_dssp T-TCCEEECCTTSCHHHHH----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEE
T ss_pred c-CCeEEEEeCCCCHHHHH----------------------HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEE
Confidence 7 67777766654322111 112468999999988 3322 22334567899
Q ss_pred EEcCcccc
Q psy10448 392 VVDEAHRL 399 (1001)
Q Consensus 392 IiDEAH~l 399 (1001)
|||||+++
T Consensus 208 VlDEaD~m 215 (844)
T 1tf5_A 208 VIDEVDSI 215 (844)
T ss_dssp EEETHHHH
T ss_pred EECchhhh
Confidence 99999986
No 281
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=28.84 E-value=1.1e+02 Score=27.11 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=39.6
Q ss_pred CCceeEEEec------cHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCC
Q psy10448 637 GLKESIEFYN------MTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGAS 690 (1001)
Q Consensus 637 ~~~KvIIFsq------~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~ 690 (1001)
...+++||+. +-........+|...|+.|..++=......++.+.+......-+
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP 75 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFP 75 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSC
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCC
Confidence 4468899998 57788889999999999999988766666566555544443333
No 282
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=28.29 E-value=28 Score=42.25 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=96.9
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 320 (1001)
+|+.+++-|+-|.--|. .|-|.-+.||.|||+++...+.-..-. .+.+.||+|+.-+ ..|...+..|
T Consensus 72 lg~r~~dvQligg~~L~------~G~iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 72 LGMRPFDVQVMGGIALH------EGKVAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp TSCCCCHHHHHHHHHHH------TTCEEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHh------CCChhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 57889999999985443 456999999999999866544322112 2348999997766 4599999998
Q ss_pred CCCCeEEEEeCCch-----------hhhhhhcccccccccccc--------------C---CCCccccCCCccccEEEec
Q psy10448 321 APDFYVVTYVGDKD-----------CRIVLRDHDISWEDTANR--------------G---GKPCRIRSSTVKFHVLLTS 372 (1001)
Q Consensus 321 ~p~~~vv~y~g~~~-----------~r~~i~~~e~~~~~~~~~--------------~---~~~~~~~~~~~~~dVvItT 372 (1001)
. ++.|.+...... ....+.++--.|.+.... . +....-+.....+||+-+|
T Consensus 143 L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgT 221 (822)
T 3jux_A 143 L-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGT 221 (822)
T ss_dssp T-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEE
T ss_pred h-CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEcc
Confidence 8 566655544210 011111111111111000 0 0000111223457899999
Q ss_pred HHHHHhhH---------hhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhh
Q psy10448 373 YELITNDV---------ALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLL 437 (1001)
Q Consensus 373 Ye~l~~d~---------~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL 437 (1001)
-..+.-|. ..+-...+.+.||||+..+-=. .+..-|++||.+ ... .++|..+
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLID-----------eArtPLiISg~~-~~~-~~~y~~~ 282 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLID-----------EARTPLIISGPS-KES-PSVYRRF 282 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTT-----------GGGSCEEEECCC-CSC-HHHHHHH
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeec-----------CCCCCceeeCCC-CCc-cHHHHHH
Confidence 88775442 1222346889999999864211 244568889854 333 3455443
No 283
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.96 E-value=99 Score=31.09 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 318 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 318 (1001)
.+.-.+|+-+.|.|||..++.++...... .++++++.-.....+....+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 45557889999999999999888777654 345777776544445444443
No 284
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=27.87 E-value=53 Score=33.48 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=20.2
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
++.++.-..|+|||..|.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 356779999999999999988765
No 285
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=27.61 E-value=1.7e+02 Score=31.49 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=23.0
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
..+.-..|.|||.++..++..+...+ +.++++.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 34455799999999888887776542 3466654
No 286
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=27.40 E-value=59 Score=33.55 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=30.9
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe-CcchHHHHH
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA-PLSTIINWE 314 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~-P~sll~qW~ 314 (1001)
+.++.-..|.|||..++.++..+...+. +..++.+ |-.-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~--~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGV--RVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTC--CEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC--CEEEEEeCCCCChhHHH
Confidence 5788999999999999999999887653 3223333 444444454
No 287
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=27.39 E-value=1.1e+02 Score=34.84 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHHHHH
Q psy10448 256 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 316 (1001)
Q Consensus 256 gv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW~~E 316 (1001)
+++.+...+..+.-.+|+-..|.|||.-++.++..+.... ..+++++.......+....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHH
Confidence 4455554566666789999999999999999888776542 2368888764333444433
No 288
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=26.90 E-value=1.3e+02 Score=26.84 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=37.2
Q ss_pred CCceeEEEec------cHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcC
Q psy10448 637 GLKESIEFYN------MTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNA 686 (1001)
Q Consensus 637 ~~~KvIIFsq------~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~ 686 (1001)
...+++||+. .-........+|...|+.|..++=......++.+.+.-..
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~ 69 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSW 69 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCC
Confidence 4568899995 5667888889999999999999877666666655544333
No 289
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=26.81 E-value=1.7e+02 Score=31.89 Aligned_cols=40 Identities=18% Similarity=-0.022 Sum_probs=29.0
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcch
Q psy10448 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 309 (1001)
Q Consensus 269 g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sl 309 (1001)
-..++-+.|.|||..++.++......+. .+.++.|.....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~~vlyId~E~s 69 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DAVCLFYDSEFG 69 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TCEEEEEESSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEeccch
Confidence 3577999999999999999888766421 245677766433
No 290
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.77 E-value=1e+02 Score=31.66 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..+.+|.-++|+|||..+-+++..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4568899999999999888776654
No 291
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=26.55 E-value=78 Score=33.86 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=26.9
Q ss_pred hcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEe
Q psy10448 264 WGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 305 (1001)
Q Consensus 264 ~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~ 305 (1001)
.....+.+|.-++|+|||..|-++.... ....+|++.|-
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~ 60 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLN 60 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEE
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEe
Confidence 3456789999999999998877765432 12345666554
No 292
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=26.39 E-value=1.4e+02 Score=32.82 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=50.2
Q ss_pred eeEEEeccHHHHHHHHHHHhh---CCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEecccccc---ccccccCCEE
Q psy10448 640 ESIEFYNMTKMLDILEDYLDG---EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGL---GINLATADTV 713 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~---~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStragg~---GINL~~Ad~V 713 (1001)
++||.+.....+.-+.+.+.. .|+++..++|+++..++...++.+..+... +++.+....-. -+++...+.|
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~--Iiv~Tp~~l~~~l~~~~~~~~~~i 143 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVFSTQFVSKNREKLSQKRFDFV 143 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS--EEEEEHHHHHHCHHHHTTCCCSEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC--EEEECHHHHHHHHHHhccccccEE
Confidence 344888887777766666666 688999999999998888888888765444 45555544311 1344555665
Q ss_pred EE
Q psy10448 714 II 715 (1001)
Q Consensus 714 Ii 715 (1001)
|+
T Consensus 144 Vi 145 (414)
T 3oiy_A 144 FV 145 (414)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 293
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=25.70 E-value=64 Score=32.90 Aligned_cols=48 Identities=15% Similarity=0.437 Sum_probs=34.5
Q ss_pred CceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHh
Q psy10448 138 EWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNK 191 (1001)
Q Consensus 138 ~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~ 191 (1001)
++..+..++..+. .++..+||+|| ..+.+++|..... +. +..++.|..
T Consensus 185 ~~~~~~~~~~~~~-~~~~~e~l~~~--~~~~~~~w~~~~~-i~--~~li~~y~~ 232 (244)
T 3ui2_A 185 EYAEVDEIVEKRG-KGKDVEYLVRW--KDGGDCEWVKGVH-VA--EDVAKDYED 232 (244)
T ss_dssp EEEEEEEEEEEES-CTTSCEEEEEE--SSSSCEEEEESTT-BC--HHHHHHHHH
T ss_pred ccccHHHHHHHhc-cCcchhhhhhh--cCCCCCCcCcchh-cC--HHHHHHHHH
Confidence 5567778887763 45678999999 5688999998664 22 456777764
No 294
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=25.68 E-value=30 Score=41.56 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=31.6
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcCCCCeEEE
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ~k~V~V 780 (1001)
+|||++|++||++||+| +-.+-.=|++|.+.-....-
T Consensus 482 Glnl~~a~~Vi~~d~~w---np~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 482 GLNLIGANRLVMFDPDW---NPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp TCCCTTEEEEEECSCCS---SHHHHHHHHTTSSSTTCCSC
T ss_pred CcccccCCEEEEECCCC---CccHHHHHHHhhhhcCCCCc
Confidence 69999999999999998 88888888888877666544
No 295
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=25.62 E-value=62 Score=28.09 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=33.3
Q ss_pred ccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy10448 633 EDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNIT 673 (1001)
Q Consensus 633 ~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s 673 (1001)
..++..+++|+||..-.........|...|+++..++|++.
T Consensus 51 ~~l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 51 NYFNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp GGSCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred HhCCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 34566788999998877777888899999998888999754
No 296
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.28 E-value=75 Score=28.04 Aligned_cols=29 Identities=7% Similarity=0.252 Sum_probs=23.0
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEE
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYER 667 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~r 667 (1001)
.+++|..........+...|...|+.+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 32 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADY 32 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEE
Confidence 36778888888889999999888875544
No 297
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=25.25 E-value=47 Score=29.50 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=32.2
Q ss_pred cccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy10448 632 NEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNIT 673 (1001)
Q Consensus 632 ~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s 673 (1001)
...++..+++++||..-.........|...||+...+.|++.
T Consensus 50 ~~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 50 LNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp GGGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred hhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 344567788999998755556677889999999888888754
No 298
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.25 E-value=1.3e+02 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=21.1
Q ss_pred eeEEEeccHHHHHHHHHHHhhCCCeEE
Q psy10448 640 ESIEFYNMTKMLDILEDYLDGEGYKYE 666 (1001)
Q Consensus 640 KvIIFsq~~~~ldiL~~~L~~~gi~~~ 666 (1001)
+++|..........+...|...|+.+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~ 29 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEID 29 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 577888888888888888888887654
No 299
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=24.00 E-value=86 Score=31.27 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.0
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeC
Q psy10448 270 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306 (1001)
Q Consensus 270 ~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P 306 (1001)
+|..-..|.|||.+++.++..+...+. .+|++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G~---rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAGY---RTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC---CEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEcc
Confidence 355667899999999999998877642 3777655
No 300
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=23.98 E-value=19 Score=38.48 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=24.7
Q ss_pred hHhhhhhhcCCCCeEEEEEEEeCCCHHHHHHHHHH
Q psy10448 764 QAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAK 798 (1001)
Q Consensus 764 QA~~RahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~ 798 (1001)
|++||++|.||...+.+|.. ...++.+.|.+...
T Consensus 302 Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 302 HRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 88999999999998888876 66667777665544
No 301
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=23.28 E-value=1.2e+02 Score=30.07 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=30.2
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 312 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~q 312 (1001)
..+.-.+|.-+.|.|||..+..++..+...+ ++++++.......+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEESRDS 65 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSSCHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcccCHHH
Confidence 3455578889999999998888876665432 45676654333333
No 302
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=23.24 E-value=45 Score=35.29 Aligned_cols=23 Identities=17% Similarity=-0.023 Sum_probs=19.5
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 268 IDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
++.+|.-+.|+|||..+.+++..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 35778999999999999988765
No 303
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=23.12 E-value=33 Score=38.39 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=23.0
Q ss_pred cccccccceeEeecCCCCCcchhhHhhhhhhcC
Q psy10448 741 YINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 773 (1001)
Q Consensus 741 ~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiG 773 (1001)
++||.+++.||++|++| +..+-+=|++|.|
T Consensus 432 Gldl~~~~~Vi~~d~~~---~~~~~~Qr~GR~~ 461 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPVP---SAIRSIQRRGRTG 461 (494)
T ss_dssp GGGSTTCCEEEESSCCH---HHHHHHHHHTTSC
T ss_pred CCCchhCCEEEEeCCCC---CHHHHHHHHhhcc
Confidence 69999999999999976 5555555555554
No 304
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.05 E-value=1.3e+02 Score=26.60 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=59.3
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCCcEEEEEeccc-ccccccccc-------
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRS-GGLGINLAT------- 709 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~~~v~LlStra-gg~GINL~~------- 709 (1001)
..+++|..........+...|...|+.+.... +..+ +++.......+ ++|+.... +..|+++..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~---a~~~l~~~~~d--lii~d~~l~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAH---NGFD---AGIKLSTFEPA--IMTLDLSMPKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEES---SHHH---HHHHHHHTCCS--EEEEESCBTTBCHHHHHHHHHTTTC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeC---CHHH---HHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHhcCc
Confidence 45788999999999999999999888665432 2222 33333322223 56666654 334554421
Q ss_pred -CCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhhhhhcCC
Q psy10448 710 -ADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 774 (1001)
Q Consensus 710 -Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~RahRiGQ 774 (1001)
...+|++-...++. . .-++.+.|- . -|+.- .+++..-.+++.++.+-+.
T Consensus 78 ~~~~~ii~~~~~~~~-~---~~~~~~~g~----------~-~~l~k-P~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 78 ANQPKILVVSGLDKA-K---LQQAVTEGA----------D-DYLEK-PFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp SSCCEEEEECCSCSH-H---HHHHHHHTC----------C-EEECS-SCCHHHHHHHHHHHHC---
T ss_pred cCCCeEEEEeCCChH-H---HHHHHHhCh----------H-HHhhC-CCCHHHHHHHHHHHcCCCC
Confidence 23444444443433 2 223444441 1 12333 3566666677777665443
No 305
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=22.86 E-value=2.2e+02 Score=30.29 Aligned_cols=25 Identities=24% Similarity=0.081 Sum_probs=20.8
Q ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Q psy10448 266 QNIDTILADEMGLGKTIQTITFLYS 290 (1001)
Q Consensus 266 ~~~g~ILADemGLGKTiqaIa~l~~ 290 (1001)
.+.-.+|+-+.|.|||.-++.++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4445788999999999999988875
No 306
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.75 E-value=74 Score=34.36 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCC--CeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448 253 QLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLF 292 (1001)
Q Consensus 253 Q~egv~wL~~~~~~~~--g~ILADemGLGKTiqaIa~l~~l~ 292 (1001)
|...+..|......+. +.+|.-+.|+|||..+-+++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3344444444334443 378899999999999998887764
No 307
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=22.45 E-value=50 Score=34.93 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEE
Q psy10448 268 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 304 (1001)
Q Consensus 268 ~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV 304 (1001)
...+|.-+.|+|||..|-++...+... .+|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEe
Confidence 357889999999999988887766432 3455554
No 308
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=22.32 E-value=1.7e+02 Score=26.48 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=37.8
Q ss_pred ceeEEEec------cHHHHHHHHHHHhhCCCe-EEEEEccCCHHHHHHHHHHhcCCCCC
Q psy10448 639 KESIEFYN------MTKMLDILEDYLDGEGYK-YERIDGNITGSMRQESIDRFNAPGAS 690 (1001)
Q Consensus 639 ~KvIIFsq------~~~~ldiL~~~L~~~gi~-~~ridG~~s~~eRq~~Id~Fn~~~~~ 690 (1001)
.+++||+. +-........+|...|++ |..++=....+.++.+........-+
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP 78 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIP 78 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSC
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcC
Confidence 57889998 577788899999999995 99988766666666555444333333
No 309
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=22.29 E-value=68 Score=35.51 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=33.9
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchHHHH
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 313 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll~qW 313 (1001)
..+.-.+|+-+.|.|||..++.++......+ +++++|.......+|
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDPV 117 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhHH
Confidence 3555678899999999999999988776543 467777765555555
No 310
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.82 E-value=1.6e+02 Score=26.77 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=37.7
Q ss_pred CceeEEEec------cHHHHHHHHHHHhhCCCe---EEEEEccCCHHHHHHHHHHhcCCCCC
Q psy10448 638 LKESIEFYN------MTKMLDILEDYLDGEGYK---YERIDGNITGSMRQESIDRFNAPGAS 690 (1001)
Q Consensus 638 ~~KvIIFsq------~~~~ldiL~~~L~~~gi~---~~ridG~~s~~eRq~~Id~Fn~~~~~ 690 (1001)
..+++||+. +-........+|...|+. |..++=....+.|+.+........-+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP 76 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIP 76 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSC
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCC
Confidence 367899998 467788888899999998 88888766666666555544443333
No 311
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=21.19 E-value=72 Score=27.79 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=32.4
Q ss_pred cCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy10448 634 DIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNIT 673 (1001)
Q Consensus 634 ~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s 673 (1001)
.++..+++|+||..-.........|...|+++..++|++.
T Consensus 52 ~l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred hCCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4456778999999876677788889999999888988754
No 312
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=20.72 E-value=1.7e+02 Score=27.25 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=39.4
Q ss_pred ceeEEEec------cHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCCCC
Q psy10448 639 KESIEFYN------MTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGAS 690 (1001)
Q Consensus 639 ~KvIIFsq------~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~~~ 690 (1001)
.+++||+. +-.....+..+|...|++|..++=......++.+.........+
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP 92 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFP 92 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSC
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcC
Confidence 47889987 56678888999999999999998877776676666655544333
No 313
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=20.60 E-value=1.5e+02 Score=32.65 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=29.4
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 310 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll 310 (1001)
+.-.+|.-+.|.|||.-++.++..+... .++++.|......
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeccccc
Confidence 3346778899999999999888776553 3457777765443
No 314
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=20.58 E-value=28 Score=41.86 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=80.4
Q ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcc-hHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccc
Q psy10448 265 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHD 343 (1001)
Q Consensus 265 ~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e 343 (1001)
..+..+|+..++|+|||.++...+.. . ...+||++|.. +..|+.+.+.+... ..+....|...
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll~---~---g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~--------- 293 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYAA---Q---GYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT--------- 293 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHH---T---TCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE---------
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHHH---C---CCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe---------
Confidence 36667899999999999877655443 2 22599999954 56788887776552 33333333321
Q ss_pred cccccccccCCCCccccCCCccccEEEecHHHHHhhHhhhcCCceeEEEEcCccccCCccc-HHHHHHhcccc---cceE
Q psy10448 344 ISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQS-KFFKFLSGYSI---QNKL 419 (1001)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~~d~~~L~~~~w~~VIiDEAH~lKN~~S-k~~~al~~l~~---~~rl 419 (1001)
.....+|+|+|++.+..+. .+...++++|||||||.+-...- .+...+..+.. ...+
T Consensus 294 ------------------~~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 294 ------------------ITTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp ------------------ECCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred ------------------ccCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 1234689999999986432 34445688999999987632211 12223333332 2357
Q ss_pred eeecCCC
Q psy10448 420 LLTGTPL 426 (1001)
Q Consensus 420 lLTGTPl 426 (1001)
++||||-
T Consensus 355 l~SAT~~ 361 (666)
T 3o8b_A 355 LATATPP 361 (666)
T ss_dssp EEESSCT
T ss_pred EECCCCC
Confidence 7799984
No 315
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.56 E-value=3.2e+02 Score=24.15 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=22.4
Q ss_pred CceeEEEeccHHHHHHHHHHHhhCCCeEE
Q psy10448 638 LKESIEFYNMTKMLDILEDYLDGEGYKYE 666 (1001)
Q Consensus 638 ~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ 666 (1001)
..+++|..........+...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHII 35 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEE
Confidence 34678888888888888888888877644
No 316
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=20.29 E-value=86 Score=34.41 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Q psy10448 267 NIDTILADEMGLGKTIQTITFLYSL 291 (1001)
Q Consensus 267 ~~g~ILADemGLGKTiqaIa~l~~l 291 (1001)
..+.+|.-++|+|||..|-+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999888877654
No 317
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.25 E-value=1.1e+02 Score=26.06 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=23.4
Q ss_pred ceeEEEeccHHHHHHHHHHHhhCCCeEEE
Q psy10448 639 KESIEFYNMTKMLDILEDYLDGEGYKYER 667 (1001)
Q Consensus 639 ~KvIIFsq~~~~ldiL~~~L~~~gi~~~r 667 (1001)
.+++|..........+...|...|+.+..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~ 30 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIW 30 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEE
Confidence 36788888888889999999888886554
No 318
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=20.03 E-value=42 Score=41.30 Aligned_cols=124 Identities=15% Similarity=0.042 Sum_probs=83.1
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEeCcchH----HHHHHHHHHH
Q psy10448 245 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI----INWEREFETW 320 (1001)
Q Consensus 245 ~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 320 (1001)
.|..++|-|..|+--|. .+. |....+|.|||+.++..+...... ...++||||+.-+ .+|...+.++
T Consensus 71 lg~~p~~VQ~~~i~~ll----~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVLN----ERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HSCCCCHHHHHHHHHHH----SSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHhhccccc----CCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 36788999999997664 433 889999999999877655422222 2248999997655 4577777777
Q ss_pred CCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEecHHHHH-----hhH----hhhcCCceeEE
Q psy10448 321 APDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELIT-----NDV----ALLGSIEWAVL 391 (1001)
Q Consensus 321 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItTYe~l~-----~d~----~~L~~~~w~~V 391 (1001)
. ++.+.+..|....... ......+|++.|...+. ... ..+......++
T Consensus 142 l-gl~v~~i~GG~~~~~r----------------------~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~l 198 (853)
T 2fsf_A 142 L-GLTVGINLPGMPAPAK----------------------REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYA 198 (853)
T ss_dssp T-TCCEEECCTTCCHHHH----------------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEE
T ss_pred c-CCeEEEEeCCCCHHHH----------------------HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEE
Confidence 6 6777776665432111 11124689999999873 111 12344567899
Q ss_pred EEcCccccC
Q psy10448 392 VVDEAHRLK 400 (1001)
Q Consensus 392 IiDEAH~lK 400 (1001)
||||||++-
T Consensus 199 VlDEaD~mL 207 (853)
T 2fsf_A 199 LVDEVDSIL 207 (853)
T ss_dssp EESCHHHHT
T ss_pred EECchHHHH
Confidence 999999754
Done!