RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10448
(1001 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 139 bits (351), Expect = 1e-36
Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 105/410 (25%)
Query: 481 ADVL-KNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKC 539
+D+L K +P K E +V L+P+QK+ YK L + + + G VS L+ + LKK
Sbjct: 2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 61
Query: 540 CNHPYLFPAAAEEAP---------VQGGQYEIQALTRAAGKLVLLSKMLKKLKED-GHRY 589
CNHP L + +GK+++L +L + +
Sbjct: 62 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKV 121
Query: 590 GIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTK 649
+ N T+
Sbjct: 122 VL----------------------------------------------------VSNYTQ 129
Query: 650 MLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLAT 709
LD+ E Y Y R+DG ++ R + ++RFN P + +F+F+LS+++GG G+NL
Sbjct: 130 TLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 189
Query: 710 ADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRA 769
A+ + +++D DWNP ND QA +R
Sbjct: 190 ANRL-------------------------------------VMFDPDWNPANDEQAMARV 212
Query: 770 HRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILR 829
R GQ+ IYR ++ ++EE++ Q K L+ VV + +F+ EL ++
Sbjct: 213 WRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE-QDVERHFSLGELRELFS 271
Query: 830 FGTEELFKEEEEQ----PENTEIIKQEAENQDPAYWVKLLRHHYEQHQED 875
+ L + N ++ ++ D + H ++
Sbjct: 272 LNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLR 321
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 132 bits (332), Expect = 2e-35
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 35/256 (13%)
Query: 238 QPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC 297
+P + L YQ++G +W+R+ LAD+MGLGKT+QTI KE
Sbjct: 5 EPYNIKAN---LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENEL 61
Query: 298 KGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPC 357
P LV PLS + NWE E +AP +
Sbjct: 62 T-PSLVICPLSVLKNWEEELSKFAPHLRFAVFHE-------------------------D 95
Query: 358 RIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQN 417
R + + ++LT+Y ++ D L +EW +V+DEA +K+ Q+K FK + +
Sbjct: 96 RSKIKLEDYDIILTTYAVLLRDTRLK-EVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKY 154
Query: 418 KLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISK---EEQVKRLHDLLGPH 474
++ LTGTP++N +++L+ ++ FL P + F+++FA K + L ++ P
Sbjct: 155 RIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPF 214
Query: 475 MLRRLKAD--VLKNMP 488
+LRR K D ++ ++P
Sbjct: 215 ILRRTKYDKAIINDLP 230
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 132 bits (333), Expect = 8e-35
Identities = 68/289 (23%), Positives = 123/289 (42%), Gaps = 44/289 (15%)
Query: 220 YTPPPEKPTTDLRKKYEKQP------PFLDDTGMQLHAYQLEGINWL-----RYSWGQNI 268
Y PP ++ EK P P L L +Q EG+ +L +
Sbjct: 24 YEPPAISAHDLIKADKEKLPVHVVVDPVL---SKVLRPHQREGVKFLWDCVTGRRIENSY 80
Query: 269 DTILADEMGLGKTIQTITFLYSLFKEGHCKGP----FLVSAPLSTIINWEREFETWAPDF 324
I+ADEMGLGKT+Q IT +++L K+ P +V +P S + NW E W
Sbjct: 81 GCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLG-G 139
Query: 325 YVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLG 384
V D + + +++ + + +L+ SYE +L
Sbjct: 140 RVQPVAIDGGSKDEIDSKLVNF----------ISQQGMRIPTPILIISYETFRLHAEVLH 189
Query: 385 SIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEK 444
+ +++ DE HRLK++ ++ + L+ + Q ++L++GTP+QN+L E F L++F+
Sbjct: 190 KGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGI 249
Query: 445 FNDLTSFQAEFAD---------------ISKEEQVKRLHDLLGPHMLRR 478
F+ F + E++++ L ++ ++RR
Sbjct: 250 LGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR 298
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 72.1 bits (175), Expect = 2e-14
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 742 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKM 801
INL +A+ VI +D WNP + QA R +RIGQ V++++ ++ ++EE++ Q+ K
Sbjct: 152 INLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 211
Query: 802 MLTHLVVRPGMGGKQANFTKQELDDILRFG 831
L ++ G + +EL ++
Sbjct: 212 SLFKDIISSG-DSWITELSTEELRKVIELS 240
Score = 49.7 bits (117), Expect = 5e-07
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 490 KSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQ-QVSLLNIMMDLKKCCNHPY 544
K E V L+P Q YK + F ++ G + + +L+ ++ LK+ +HP
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 56
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 61.8 bits (149), Expect = 7e-11
Identities = 46/297 (15%), Positives = 97/297 (32%), Gaps = 40/297 (13%)
Query: 462 EQVKRLHDLLGPHMLRRLKADVLKN-MPSKSEFIVRVELSPMQKKYYKYILTRNFEALNP 520
E K + LL + LK + S S I + E+ + + + N +
Sbjct: 13 EIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGL 72
Query: 521 KGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLK 580
L+ ++L + +A + + T+A+ ++ +M K
Sbjct: 73 LLYHAMALKLHHAIELLETQ-----GLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKK 127
Query: 581 KLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKE 640
+ I + + K + K +++ ++ + ++ I
Sbjct: 128 AISLLVQAKEIGLD--------HPK---------MDKLKEIIREQLQRKQNSKIIV---- 166
Query: 641 SIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQF-----VFL 695
F N + + + L +G K +R G + + R +F L
Sbjct: 167 ---FTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223
Query: 696 LSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ--QNKYINLATADTV 750
++T G G+++ D V+ Y+ + IQ R R G+ + I L T
Sbjct: 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ---RRGRTGRHMPGRVIILMAKGTR 277
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 51.8 bits (124), Expect = 3e-09
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 138 EWLIANRVINSKTLR----DGSTIYLVKWRDLPYDKATWEDENEDIPGLKESI-EFYNKK 192
E+ + R+I+S+ YLVKWR L YD+ATWE+ + + E + F N++
Sbjct: 5 EFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRE 64
Query: 193 KSK 195
SK
Sbjct: 65 NSK 67
Score = 48.3 bits (115), Expect = 5e-08
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 594 EWLIANRVINSKTLR----DGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFY 645
E+ + R+I+S+ YLVKWR L YD+ATWE+ + + E ++ +
Sbjct: 5 EFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHF 60
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 53.0 bits (126), Expect = 3e-08
Identities = 35/263 (13%), Positives = 67/263 (25%), Gaps = 61/263 (23%)
Query: 164 DLPYDKATWE-DENEDIPGLKESIEFYNKKKSKGRGKTKTKELQEDEDGASGSKPRRYTP 222
++ Y++ T + +P K ++ + R Y
Sbjct: 3 EIYYERGTIVVKGDAHVPHAK-----FDSRSGTYRAL-----------AFRYRDIIEYFE 46
Query: 223 PPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTI 282
D P F D + L YQ + + W + + G GKT
Sbjct: 47 SNGIEFVDNAADPIPTPYF--DAEISLRDYQEKALER----WLVDKRGCIVLPTGSGKTH 100
Query: 283 QTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDH 342
+ + L V L+ W+ + ++ K+ + +
Sbjct: 101 VAMAAINELSTPTLI-----VVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVST 155
Query: 343 DISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSN 402
S A + G + +L+ DE H L +
Sbjct: 156 YDSAYVNAEKLGN-------------------------------RFMLLIFDEVHHLPAE 184
Query: 403 QSKFFKFLSGYSIQNKLLLTGTP 425
+ + +L LT T
Sbjct: 185 S--YVQIAQMSIAPFRLGLTATF 205
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 49.5 bits (118), Expect = 3e-08
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 137 PEWLIANRVINSKTLRD--GSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193
++ I R+I + G Y KW+ LPY + +WED + I+ Y +K
Sbjct: 21 KQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK 79
Score = 46.8 bits (111), Expect = 2e-07
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 593 PEWLIANRVINSKTLRD--GSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYN 646
++ I R+I + G Y KW+ LPY + +WED + I+ Y
Sbjct: 21 KQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYF 76
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 48.6 bits (116), Expect = 5e-08
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 136 KPEWLIANRVINSKTLRDGSTI-YLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKS 194
+ E+ + R+++ K R+G+ Y ++W + TWE E++ G + + ++K
Sbjct: 6 QEEYEV-ERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPP-ENLSGCSAVLAEWKRRKR 63
Query: 195 KGRGK 199
+ +G
Sbjct: 64 RLKGS 68
Score = 42.1 bits (99), Expect = 9e-06
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 592 KPEWLIANRVINSKTLRDGSTI-YLVKWRDLPYDKATWEDENEDIPGLKESIEFYN 646
+ E+ + R+++ K R+G+ Y ++W + TWE E++ G + +
Sbjct: 6 QEEYEV-ERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPP-ENLSGCSAVLAEWK 59
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 51.1 bits (121), Expect = 1e-07
Identities = 36/268 (13%), Positives = 72/268 (26%), Gaps = 72/268 (26%)
Query: 485 KNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPY 544
K++ + + V L+ ++ Y+ + L +G L D K
Sbjct: 1 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT-----LRRAEDFNKIVMASG 55
Query: 545 LFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINS 604
A E I ++ K+ L ++L
Sbjct: 56 YDERAYEALRAWEEARRIAFNSK--NKIRKLREIL------------------------- 88
Query: 605 KTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYK 664
+ R I + +L Y + +
Sbjct: 89 ERHRKDKIIIFTRHNELVYRISKV----------------------------------FL 114
Query: 665 YERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHN 724
I + R+E ++ F +F ++S++ GI++ A+ +I +
Sbjct: 115 IPAITHRTSREEREEILEGFRTG---RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSARE 171
Query: 725 DIQAFSRAHRIGQQNKY---INLATADT 749
IQ R R + K L + T
Sbjct: 172 YIQRLGRILRPSKGKKEAVLYELISRGT 199
Score = 49.9 bits (118), Expect = 3e-07
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 729 FSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK-VMIYRFVTRN 787
F ++ I++ A+ +I + IQ R R + K ++Y ++R
Sbjct: 139 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198
Query: 788 S 788
+
Sbjct: 199 T 199
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 47.1 bits (112), Expect = 2e-07
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 144 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSK 195
R+++ + + G T YLV+W+ + TWE E + + +E I +N++ ++
Sbjct: 11 RIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPE-QHLVNCEEYIHDFNRRHTE 61
Score = 42.8 bits (101), Expect = 5e-06
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 600 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYN 646
R+++ + + G T YLV+W+ + TWE E + + +E I +N
Sbjct: 11 RIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPE-QHLVNCEEYIHDFN 56
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 38.2 bits (89), Expect = 2e-04
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 144 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193
++I+ + R G Y +KW+ P + TWE E ++ ++ I+ Y +
Sbjct: 6 KIIDRRV-RKGMVEYYLKWKGYPETENTWEPE-NNL-DCQDLIQQYEASR 52
Score = 35.8 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 600 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 631
++I+ + R G Y +KW+ P + TWE E
Sbjct: 6 KIIDRRV-RKGMVEYYLKWKGYPETENTWEPE 36
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 73
Score = 38.3 bits (89), Expect = 2e-04
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 144 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSKGRGKTKT 202
+V++ + G YL+KW+ + TWE E E++ + I + + + K+
Sbjct: 18 KVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPE-ENL-DCPDLIAEFLQSQKTAHETDKS 73
Score = 33.2 bits (76), Expect = 0.014
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 578 MLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 631
M++++ E+ E+++ +V++ + G YL+KW+ + TWE E
Sbjct: 2 MVEEVLEEEE-----EEYVV-EKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPE 48
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 35.5 bits (82), Expect = 0.002
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 144 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 175
++ + R G YLVKW+ +TWE E
Sbjct: 9 ALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPE 39
Score = 35.5 bits (82), Expect = 0.002
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 600 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDE 631
++ + R G YLVKW+ +TWE E
Sbjct: 9 ALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPE 39
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 35.2 bits (81), Expect = 0.003
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 144 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193
+ + + +L+KW D + TWE E I ++ N K
Sbjct: 28 KTVPDLNNCKENYEFLIKWTDESHLHNTWETY-ESIGQVRGLKRLDNYCK 76
Score = 32.5 bits (74), Expect = 0.028
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 600 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDEN--EDIPGLKE 640
+ + + +L+KW D + TWE + GLK
Sbjct: 28 KTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKR 70
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 36.5 bits (83), Expect = 0.006
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 691 QFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATAD 748
+ L++T GI++ + VI Y NP + + R R G++ K I++
Sbjct: 78 KIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR 135
Score = 34.2 bits (77), Expect = 0.036
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 740 KYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVE--ERVTQVA 797
+ I++ + VI Y NP + + R R G++ K + R + + +
Sbjct: 90 RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREYKKLRYIERAM 147
Query: 798 KRKM 801
K K+
Sbjct: 148 KLKI 151
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 55
Score = 33.2 bits (76), Expect = 0.009
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 144 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKK 193
++I + + G Y VKW+ TWE E +I + + K
Sbjct: 8 KIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPE-VNILDRRLIDIYEQTNK 55
Score = 32.4 bits (74), Expect = 0.017
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 600 RVINSKTLRDGSTIYLVKWRDLPYDKATWEDENE 633
++I + + G Y VKW+ TWE E
Sbjct: 8 KIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVN 40
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 34.9 bits (79), Expect = 0.030
Identities = 32/262 (12%), Positives = 70/262 (26%), Gaps = 45/262 (17%)
Query: 211 GASGSKPRRYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDT 270
A+ + PE L K++ + F + A Q + +
Sbjct: 12 AAAAAAAASLCLFPE---DFLLKEFVE---FFRKCVGEPRAIQKMWAKRIL----RKESF 61
Query: 271 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYV 330
G+GKT + SLF K +++ +I +A
Sbjct: 62 AATAPTGVGKT--SFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKA------ 113
Query: 331 GDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAV 390
+ F +++T+ + ++ LG ++
Sbjct: 114 ---GVGTENLIGYYHGRIPKRE---KENFMQNLRNFKIVITTTQFLSKHYRELGHFDF-- 165
Query: 391 LVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTS 450
+ VD+ + + ++ L L G +L +++
Sbjct: 166 IFVDDVDAI---------LKASKNVDKLLHLLGFH-----YDLKTKSWVGEARGCLMVST 211
Query: 451 FQAEFADISKEEQVKRLHDLLG 472
A K ++ + LL
Sbjct: 212 -----ATAKKGKKAELFRQLLN 228
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 34.8 bits (78), Expect = 0.032
Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 28/197 (14%)
Query: 247 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 306
+Q YQ + + + ++ GLGKT+ I + + ++ G L+ AP
Sbjct: 8 IQPRIYQEVIYAKCKET-----NCLIVLPTGLGKTL--IAMMIAEYRLTKYGGKVLMLAP 60
Query: 307 LSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKF 366
++ E +IV + S E+ + + I ++
Sbjct: 61 TKPLVLQHAESFRR--------LFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI 112
Query: 367 HVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSK---FFKFLSGYSIQNKLLLTG 423
L + + D +++V DEAHR N + ++ + LT
Sbjct: 113 ENDLLAGRISLED--------VSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164
Query: 424 TP--LQNNLEELFHLLN 438
+P + E+ + L
Sbjct: 165 SPGSTPEKIMEVINNLG 181
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 137
Score = 33.2 bits (76), Expect = 0.044
Identities = 13/83 (15%), Positives = 30/83 (36%)
Query: 847 EIIKQEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQTDDENDDDDFDEKNDGD 906
+ K+E EN + + + ++ ++ + +S + K V D F +
Sbjct: 47 LVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRI 106
Query: 907 LTGRRSAKKKEMSKQERDRPLPP 929
L ++ ++ P PP
Sbjct: 107 LGAVAKVREAFQPQEPDFPPPPP 129
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 33.3 bits (75), Expect = 0.11
Identities = 24/228 (10%), Positives = 56/228 (24%), Gaps = 32/228 (14%)
Query: 208 DEDGASGSKPRRYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLE-GINWLRYSWGQ 266
D G + E D + K + + ++ H YQ + L
Sbjct: 73 DNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRI 132
Query: 267 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYV 326
G+++ + K +V +T + + A DF
Sbjct: 133 LNLP-----TSAGRSLIQALLARYYLENYEGKILIIVP---TTALTTQ-----MADDFVD 179
Query: 327 VTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSI 386
+ + + + ++ + + + ++
Sbjct: 180 YRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMM---------- 229
Query: 387 EWAVLVVDEAHRLKSNQSKFFKFLSGYSIQN-KLLLTGTPLQNNLEEL 433
+ DE H +SG + K L+G+ +
Sbjct: 230 -----MNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRDGKANIM 270
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 31.0 bits (70), Expect = 0.13
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 148 SKTLRDGSTIYLVKWRDLPYDKATWEDENE----DIPGLKESIEFYNKKK 193
K G YL+KW+ + TWE E ++ G+K+ ++ Y KK
Sbjct: 38 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-LDNYKKKD 86
Score = 29.5 bits (66), Expect = 0.45
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 604 SKTLRDGSTIYLVKWRDLPYDKATWEDENE 633
K G YL+KW+ + TWE E
Sbjct: 38 EKNKEPGEIQYLIKWKGWSHIHNTWETEET 67
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 44
Score = 29.5 bits (66), Expect = 0.17
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 143 NRVINSKTLRDGSTIYLVKWRD 164
N++I S+T +G+ YL++W+D
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKD 24
Score = 29.5 bits (66), Expect = 0.17
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 599 NRVINSKTLRDGSTIYLVKWRD 620
N++I S+T +G+ YL++W+D
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKD 24
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 30.5 bits (69), Expect = 0.32
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 847 EIIKQEAEN-QDPAY------WVKLLRHHYEQHQEDVSRTLGKGKRVRKQTDDENDDDDF 899
++ E +N + Y KLL + + + + + D+++F
Sbjct: 47 HVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTE--QVEAAVEALSSDPAQPMDENEF 104
Query: 900 DEKNDGDLTGRRSAKK 915
+ + G R +K
Sbjct: 105 IDASRLVYDGIRDIRK 120
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 54
Score = 28.6 bits (64), Expect = 0.43
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 141 IANRVINSKTLRDGSTI-YLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSK 195
+A VI + DG TI YLVKW D ATWE ++ L + ++
Sbjct: 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQDNVDSTLVL--LYQQQQPMN 53
Score = 28.2 bits (63), Expect = 0.60
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 597 IANRVINSKTLRDGSTI-YLVKWRDLPYDKATWEDE 631
+A VI + DG TI YLVKW D ATWE +
Sbjct: 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQ 35
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.4 bits (67), Expect = 0.57
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 32/163 (19%)
Query: 266 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFY 325
+ + T+L G GKT + FL + E + + + ++ E + D
Sbjct: 6 KGMTTVLDFHPGAGKTRR---FLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK 62
Query: 326 VVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGS 385
T + ++
Sbjct: 63 FHTQ----------AFSAHGSGREVIDAMCHATLTYRMLEP----------------TRV 96
Query: 386 IEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNK---LLLTGTP 425
+ W V+++DEAH L + + + N+ +L+T TP
Sbjct: 97 VNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 30.1 bits (66), Expect = 1.4
Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 9/191 (4%)
Query: 680 SIDRFNAPGASQFVFLLSTRSGGLGINLATA------DTVII---YDSDWNPHNDIQAFS 730
++ F PG + GG G N A A + I D Q +
Sbjct: 17 NLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLAT 76
Query: 731 RAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVE 790
I + +T +I + + I A + A + R +++
Sbjct: 77 DNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALL 136
Query: 791 ERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTEELFKEEEEQPENTEIIK 850
++ + M + + +EL D L + + E E + T I
Sbjct: 137 MQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRV 196
Query: 851 QEAENQDPAYW 861
+ E+ A
Sbjct: 197 ENDEDAAKAAQ 207
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 29.4 bits (65), Expect = 1.7
Identities = 8/98 (8%), Positives = 25/98 (25%), Gaps = 11/98 (11%)
Query: 644 FYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGL 703
+ + + + + L + I + ++ ++F G + + G L
Sbjct: 31 YARTGEEAEEIYESLK------NKFRIGIVTATKKGDYEKFVE-GEIDHLIGTAHYYGTL 83
Query: 704 GINLATADT---VIIYDSDWNPHNDIQAFSRAHRIGQQ 738
L + + I+ +
Sbjct: 84 VRGLDLPERIRFAVFVGCPSFRVT-IEDIDSLSPQMVK 120
Score = 29.0 bits (64), Expect = 2.9
Identities = 13/154 (8%), Positives = 40/154 (25%), Gaps = 14/154 (9%)
Query: 748 DTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLV 807
+ + Q ++ ER+ +R + +
Sbjct: 94 RFAVFVGCPSFRVT----IEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREI 149
Query: 808 VRPGMGGKQANFTKQELDDILRFGTEELFKEEEEQPENTEIIKQEAENQDPAYWVKLLRH 867
++ K + + D++ E +F + + + + LL
Sbjct: 150 LK-----KVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED 204
Query: 868 HYEQHQEDVSRTLGKGKRVRKQTDDENDDDDFDE 901
++ + ++ D+ DF++
Sbjct: 205 D-----SELLSAFIERAKLYDIEFKSIDEVDFEK 233
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.1 bits (61), Expect = 3.6
Identities = 10/124 (8%), Positives = 30/124 (24%), Gaps = 2/124 (1%)
Query: 10 LAIQRGHWEHRRYDRDREEEKKEKEEARIYGQMARQILLALFLGTGDRYLQTSSPKSPSQ 69
+ + + D R+ +E ++ ++ + +
Sbjct: 22 FIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV 81
Query: 70 NLDFTSFLEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRHNINDEELEKK 129
+ T+ + + + P E KR ++ + + L
Sbjct: 82 IISDTNLNPERRLAWETFAKEYGWKVEHKV--FDVPWTELVKRNSKRGTKAVPIDVLRSM 139
Query: 130 YYRY 133
Y
Sbjct: 140 YKSM 143
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 28.1 bits (61), Expect = 3.7
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 712 TVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATAD 748
VI +D + R+ R G INL +
Sbjct: 103 VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN 139
>d1eexb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 178
Score = 27.9 bits (62), Expect = 4.7
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 697 STRSG-GLGINLATADTVIIYDSDWNPHNDIQAFSRA 732
+ SG G+ I + + T +I+ P ++++ F +A
Sbjct: 76 NRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQA 112
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.6 bits (60), Expect = 4.8
Identities = 16/73 (21%), Positives = 27/73 (36%)
Query: 676 MRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRI 735
++E + L+ST G+++ +I YD N I R+ R
Sbjct: 69 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 128
Query: 736 GQQNKYINLATAD 748
G++ IN D
Sbjct: 129 GRKGVAINFVKND 141
>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma
virus, strain pr-C [TaxId: 11886]}
Length = 124
Score = 26.7 bits (59), Expect = 6.9
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 747 ADTVIIYDSDWNPHNDIQAFSRAHR--IGQQNKVMIYRFVTRNSVEER 792
AD II + DW + + IG + R + V R
Sbjct: 40 ADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIELGVINR 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,883,219
Number of extensions: 195419
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 63
Length of query: 1001
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 907
Effective length of database: 1,116,976
Effective search space: 1013097232
Effective search space used: 1013097232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)