BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10449
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 26 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRD 73
W N F+T +LV + +++E LG + L V+ F R++R+
Sbjct: 291 WQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRN 338
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 26 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRD 73
W N F+T +LV + +++E LG + L V+ F R++R+
Sbjct: 293 WQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRN 340
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 26 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRD 73
W N F+T +LV + +++E LG + L V+ F R++R+
Sbjct: 293 WQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRN 340
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 26 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRD 73
W N F+T +LV + +++E LG + L V+ F R++R+
Sbjct: 293 WQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRN 340
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 26 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRD 73
W N F+T +LV + +++E LG + L V+ F R++R+
Sbjct: 293 WQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRN 340
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 26 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRD 73
W N F+T +LV + +++E LG + L V+ F R++R+
Sbjct: 293 WQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRN 340
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 26 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRD 73
W N F+T +LV + +++E LG + L V+ F R++R+
Sbjct: 293 WQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRN 340
>pdb|4GPS|A Chain A, Crystal Structure Of K. Lactis Dxo1 (Ydr370c)
pdb|4GPU|A Chain A, Crystal Structure Of K. Lactis Dxo1 (Ydr370c) In Complex
With Manganese
Length = 423
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQND 100
A K++D+Y KI NS +G P + ND
Sbjct: 343 AYKIQDIYHKINNSSIVGKPGKFYKFNPNVAND 375
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 24 YVWPNIFETSP---HLVQAFMDAVEGLR---VALGPVRILQYVLQGLFHPARKVRDVYWK 77
Y +P ++++ H++ M +EG + V P + Y F P + V + +
Sbjct: 155 YRYPFVYDSKKRLCHILAVSMQLMEGKKYCSVKGEPPDLTWYC----FKPRKSVTENHHL 210
Query: 78 IYNSLYIG-GQDALISAYP 95
IY S Y+G DA IS P
Sbjct: 211 IYGSAYVGENPDAFISKCP 229
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
Length = 432
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 24 YVWPNIFETSP---HLVQAFMDAVEGLR---VALGPVRILQYVLQGLFHPARKVRDVYWK 77
Y +P ++++ H++ M +EG + V P + Y F P + V + +
Sbjct: 155 YRYPFVYDSKKRLCHILYVSMQLMEGKKYCSVKGEPPDLTWYC----FKPRKSVTENHHL 210
Query: 78 IYNSLYIG-GQDALISAYP 95
IY S Y+G DA IS P
Sbjct: 211 IYGSAYVGENPDAFISKCP 229
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 24 YVWPNIFETSP---HLVQAFMDAVEGLR---VALGPVRILQYVLQGLFHPARKVRDVYWK 77
Y +P ++++ H++ M +EG + V P + Y F P + V + +
Sbjct: 150 YRYPFVYDSKKRLCHILYVSMQLMEGKKYCSVKGEPPDLTWYC----FKPRKSVTENHHL 205
Query: 78 IYNSLYIG-GQDALISAYP 95
IY S Y+G DA IS P
Sbjct: 206 IYGSAYVGENPDAFISKCP 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.145 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,483,357
Number of Sequences: 62578
Number of extensions: 125919
Number of successful extensions: 354
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 11
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)