BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10449
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3
Length = 1304
Score = 203 bits (517), Expect = 2e-52, Method: Composition-based stats.
Identities = 86/107 (80%), Positives = 97/107 (90%)
Query: 8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct: 1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257
Query: 68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304
>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1
Length = 1304
Score = 202 bits (513), Expect = 6e-52, Method: Composition-based stats.
Identities = 85/107 (79%), Positives = 97/107 (90%)
Query: 8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct: 1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257
Query: 68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct: 1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304
>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
Length = 1307
Score = 201 bits (512), Expect = 9e-52, Method: Composition-based stats.
Identities = 85/107 (79%), Positives = 96/107 (89%)
Query: 8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R++QY LQGLFHP
Sbjct: 1201 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQYCLQGLFHP 1260
Query: 68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY L
Sbjct: 1261 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYTL 1307
>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=prp10 PE=1 SV=3
Length = 1205
Score = 116 bits (291), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/98 (47%), Positives = 66/98 (67%)
Query: 8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
G G G EDA+ HLLN +WPNI E SPH++ A + ++G+R +G I+ Y++QGLFHP
Sbjct: 1099 GCVGLGVEDAMIHLLNILWPNILEESPHVINAVREGIDGIRNCIGVGPIMAYLVQGLFHP 1158
Query: 68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVY 105
+RKVR+ YW YNS Y+ DA++ YP + +D N Y
Sbjct: 1159 SRKVRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNY 1196
>sp|P49955|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HSH155 PE=1 SV=1
Length = 971
Score = 105 bits (262), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 11 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK 70
G G EDA HL+N + PNIFETSPH + ++ +E L ALGP + Y+ GLFHPA+
Sbjct: 870 GTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGLEALSQALGPGLFMNYIWAGLFHPAKN 929
Query: 71 VRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
VR +W++YN++Y+ QDA++ YP + D Y+ ELD VL
Sbjct: 930 VRKAFWRVYNNMYVMYQDAMVPFYP-VTPDNNEEYIE-ELDLVL 971
>sp|C0QT41|DAPA_PERMH 4-hydroxy-tetrahydrodipicolinate synthase OS=Persephonella marina
(strain DSM 14350 / EX-H1) GN=dapA PE=3 SV=1
Length = 293
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 58 QYVLQGLFHPARKVRDVYWKIYNSLYI 84
+ L+G F AR++ D YWK++ +L+I
Sbjct: 219 RLALEGRFEEARQIHDRYWKLFKTLFI 245
>sp|A4WHY5|SYFA_PYRAR Phenylalanine--tRNA ligase alpha subunit OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=pheS PE=3 SV=1
Length = 488
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 34 PHLVQAFMDAVEGLRVAL------GPVRILQY-----VLQGLFHPARKVRDVYWKIYNSL 82
PH F+D V + + L GPV +++ + Q HPAR+V D ++ +
Sbjct: 217 PHFFNEFLDYVREVMIGLGFEEVRGPVLEVEFWNFDALFQAQDHPAREVHDTFYIRWEGP 276
Query: 83 YIGGQDALISAYPRIQND 100
+ L+ A R+ +
Sbjct: 277 IEAPPEHLLEAVGRVHEE 294
>sp|P95970|SYK_SULSO Lysine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=lysS PE=3 SV=1
Length = 494
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 66 HPARKVRDVYWKI--YNSLYIGGQDALISAYPRIQNDMKNVYLRYELDY 112
+P + ++YW YN + +D L S ++ N K VY +YE+D+
Sbjct: 257 NPEFTLLELYWAYADYNDIMNLTEDLLKSVVKKVTNSTKIVYGKYEIDF 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.145 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,560,642
Number of Sequences: 539616
Number of extensions: 1553043
Number of successful extensions: 3953
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3945
Number of HSP's gapped (non-prelim): 10
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)