Query psy10449
Match_columns 114
No_of_seqs 106 out of 152
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 18:28:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0213|consensus 100.0 3.2E-54 6.9E-59 389.5 7.5 112 3-114 1061-1172(1172)
2 COG5181 HSH155 U2 snRNP splice 100.0 1.4E-45 3E-50 329.7 7.0 110 3-114 866-975 (975)
3 PF14959 GSAP-16: gamma-Secret 84.1 0.89 1.9E-05 33.5 2.3 39 35-73 44-98 (115)
4 PF02985 HEAT: HEAT repeat; I 78.2 2.1 4.6E-05 23.6 2.0 19 56-74 1-19 (31)
5 KOG2171|consensus 75.7 1.6 3.5E-05 42.4 1.7 50 5-54 370-423 (1075)
6 PF12348 CLASP_N: CLASP N term 64.2 31 0.00068 25.4 6.1 70 18-87 88-163 (228)
7 PHA02456 zinc metallopeptidase 64.2 4 8.8E-05 31.3 1.4 18 10-27 75-92 (141)
8 COG5181 HSH155 U2 snRNP splice 59.3 7.6 0.00017 37.2 2.5 29 21-49 919-947 (975)
9 PF13646 HEAT_2: HEAT repeats; 56.9 37 0.00081 21.0 4.7 41 31-75 11-51 (88)
10 PF05201 GlutR_N: Glutamyl-tRN 52.8 22 0.00048 26.3 3.6 60 15-74 89-150 (152)
11 KOG0213|consensus 48.9 13 0.00029 36.3 2.4 30 19-48 1112-1141(1172)
12 PF15220 HILPDA: Hypoxia-induc 47.1 11 0.00023 25.6 1.1 37 19-55 2-38 (63)
13 PF01347 Vitellogenin_N: Lipop 46.2 25 0.00055 30.1 3.5 57 6-81 513-569 (618)
14 PF05503 Pox_G7: Poxvirus G7-l 39.6 13 0.00029 32.5 0.8 12 72-83 88-99 (363)
15 PF02284 COX5A: Cytochrome c o 39.5 53 0.0012 24.4 3.8 43 22-64 33-89 (108)
16 PHA03080 putative virion core 38.9 16 0.00034 32.1 1.1 12 72-83 89-100 (366)
17 PF13513 HEAT_EZ: HEAT-like re 31.0 40 0.00086 19.8 1.7 40 6-45 10-53 (55)
18 PF10652 DUF2480: Protein of u 31.0 31 0.00067 27.4 1.5 40 56-95 33-79 (167)
19 smart00638 LPD_N Lipoprotein N 30.7 88 0.0019 26.9 4.4 56 6-81 469-525 (574)
20 COG4133 CcmA ABC-type transpor 29.3 42 0.00092 27.4 2.1 37 55-93 42-89 (209)
21 PF04118 Dopey_N: Dopey, N-ter 28.8 89 0.0019 26.1 4.0 60 17-76 135-195 (307)
22 PF10508 Proteasom_PSMB: Prote 28.6 1.4E+02 0.0031 25.9 5.3 48 34-81 52-104 (503)
23 PF12672 DUF3793: Protein of u 26.2 17 0.00037 27.8 -0.6 11 72-82 133-143 (176)
24 COG2307 Uncharacterized protei 26.2 65 0.0014 27.7 2.8 34 38-88 81-118 (313)
25 PF15592 Imm22: Immunity prote 25.2 40 0.00087 24.5 1.2 16 72-87 26-41 (116)
26 PHA02999 Hypothetical protein; 22.7 38 0.00081 30.0 0.7 13 20-32 181-193 (382)
27 PF01851 PC_rep: Proteasome/cy 22.6 30 0.00065 20.0 0.1 30 5-38 4-35 (35)
28 KOG4144|consensus 22.0 28 0.00062 28.0 -0.1 21 78-98 135-155 (190)
29 PRK00676 hemA glutamyl-tRNA re 21.9 1.2E+02 0.0026 25.9 3.5 41 34-74 108-148 (338)
30 PF08938 HBS1_N: HBS1 N-termin 21.9 38 0.00083 22.6 0.5 39 33-81 21-59 (79)
31 KOG2032|consensus 21.7 70 0.0015 29.5 2.2 58 16-73 462-520 (533)
32 cd00923 Cyt_c_Oxidase_Va Cytoc 20.7 1.8E+02 0.0039 21.5 3.8 35 30-64 38-86 (103)
33 KOG3877|consensus 20.5 66 0.0014 28.4 1.8 31 14-44 160-190 (393)
34 PF06244 DUF1014: Protein of u 20.2 68 0.0015 23.9 1.6 29 38-75 52-80 (122)
35 PF02957 TT_ORF2: TT viral ORF 20.1 57 0.0012 23.1 1.1 12 13-24 28-39 (122)
36 PF10521 DUF2454: Protein of u 20.0 3.8E+02 0.0083 21.4 5.9 63 14-77 167-246 (282)
No 1
>KOG0213|consensus
Probab=100.00 E-value=3.2e-54 Score=389.51 Aligned_cols=112 Identities=65% Similarity=1.161 Sum_probs=110.5
Q ss_pred eeeeeeecccCchHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhh
Q psy10449 3 VCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSL 82 (114)
Q Consensus 3 ~~laLg~~GlG~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~ 82 (114)
.||||||+|+|||||+|||||++||||||||||||||++||+||+|++|||+.+|+|+||||||||||||++|||+||++
T Consensus 1061 ~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1061 KHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceeecccCcccCcccccccccccccC
Q psy10449 83 YIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114 (114)
Q Consensus 83 Yi~~~DalVp~YP~~~~~~~~~y~r~eL~~~l 114 (114)
|+|+||||||+||+.+|+.+|.|.|.|||+++
T Consensus 1141 y~~~~dalv~~ypv~ed~p~n~y~~~eld~~l 1172 (1172)
T KOG0213|consen 1141 YHGSQDALVACYPVEEDDPENAYYRYELDYVL 1172 (1172)
T ss_pred hhcccchhhhccccCCCCcchhhhhhhhcccC
Confidence 99999999999999999999999999999975
No 2
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=100.00 E-value=1.4e-45 Score=329.66 Aligned_cols=110 Identities=41% Similarity=0.755 Sum_probs=104.1
Q ss_pred eeeeeeecccCchHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhh
Q psy10449 3 VCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSL 82 (114)
Q Consensus 3 ~~laLg~~GlG~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~ 82 (114)
.|++|||.|+|.|||+|||||++|||||||||||||+|.|++||++.+||||.+|+|+|||||||+|+||+.||++||++
T Consensus 866 ~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~m 945 (975)
T COG5181 866 RHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIM 945 (975)
T ss_pred HHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceeecccCcccCcccccccccccccC
Q psy10449 83 YIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114 (114)
Q Consensus 83 Yi~~~DalVp~YP~~~~~~~~~y~r~eL~~~l 114 (114)
|+++|||||||||..+|+ |.+...||+++|
T Consensus 946 yv~~~damvp~ypv~~d~--n~e~~~~l~i~i 975 (975)
T COG5181 946 YVFDSDAMVPCYPVEEDL--NPELARTLHICI 975 (975)
T ss_pred hhcccccccccccCCCCc--CHHHHhhhhccC
Confidence 999999999999988776 344557888765
No 3
>PF14959 GSAP-16: gamma-Secretase-activating protein C-term
Probab=84.14 E-value=0.89 Score=33.50 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhHHhhchH----------------HHHHHHHhhhcccchhhhH
Q psy10449 35 HLVQAFMDAVEGLRVALGPV----------------RILQYVLQGLFHPARKVRD 73 (114)
Q Consensus 35 hVi~av~~aie~lr~alGp~----------------~~l~Y~lqGLFHPARkVR~ 73 (114)
|+.+++.+|+|++..-++|| .++||+=.|.|.....|-+
T Consensus 44 ~lmer~~~A~~~l~fPlP~GF~t~f~~LG~rcLp~~~FLqYid~gVf~lt~~~v~ 98 (115)
T PF14959_consen 44 HLMERIYEATESLCFPLPPGFHTFFTYLGYRCLPLHTFLQYIDNGVFELTEDFVK 98 (115)
T ss_pred HHHHHHHHHHHHccCCCCccHHHHHHHHhHhhccHHHHHHHHhcCeeEecHHHHH
Confidence 56779999999999999998 8999999999999876644
No 4
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=78.23 E-value=2.1 Score=23.55 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=16.0
Q ss_pred HHHHHHhhhcccchhhhHH
Q psy10449 56 ILQYVLQGLFHPARKVRDV 74 (114)
Q Consensus 56 ~l~Y~lqGLFHPARkVR~~ 74 (114)
+++.++++|-+|.-+||+.
T Consensus 1 llp~l~~~l~D~~~~VR~~ 19 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQA 19 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHH
Confidence 4788999999999999986
No 5
>KOG2171|consensus
Probab=75.72 E-value=1.6 Score=42.44 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=43.8
Q ss_pred eeeeecccCchHHHHHH----HHhhccccccccHHHHHHHHHHHhhhHHhhchH
Q psy10449 5 IVSGVYGFGCEDALTHL----LNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV 54 (114)
Q Consensus 5 laLg~~GlG~EDa~iHl----LN~vwPNIfEtSphVi~av~~aie~lr~alGp~ 54 (114)
|||+++|-||.|.++-. ++.|.+.+=.+.|.|+.|...||-=|..-++|.
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 68999999999988764 556666777899999999999999999999998
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=64.20 E-value=31 Score=25.44 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHHhhcccccc----ccHHHHHHHHHHHhhhHHhhc--hHHHHHHHHhhhcccchhhhHHHHhhhhhhhccCC
Q psy10449 18 LTHLLNYVWPNIFE----TSPHLVQAFMDAVEGLRVALG--PVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQ 87 (114)
Q Consensus 18 ~iHlLN~vwPNIfE----tSphVi~av~~aie~lr~alG--p~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~~ 87 (114)
|-..+..+.|.+++ +..-+.++..++++++--..+ +..+...+.+|+-|...+||..=.+.-..+--...
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 55556666666665 566788899999999999999 44459999999999999999987776655544333
No 7
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=64.19 E-value=4 Score=31.29 Aligned_cols=18 Identities=44% Similarity=0.855 Sum_probs=15.9
Q ss_pred cccCchHHHHHHHHhhcc
Q psy10449 10 YGFGCEDALTHLLNYVWP 27 (114)
Q Consensus 10 ~GlG~EDa~iHlLN~vwP 27 (114)
..-||||.+.|=||.+|+
T Consensus 75 ~~KGC~~TL~HEL~H~WQ 92 (141)
T PHA02456 75 ANKGCRDTLAHELNHAWQ 92 (141)
T ss_pred cccchHHHHHHHHHHHHh
Confidence 345999999999999997
No 8
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=59.28 E-value=7.6 Score=37.16 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=25.5
Q ss_pred HHHhhccccccccHHHHHHHHHHHhhhHH
Q psy10449 21 LLNYVWPNIFETSPHLVQAFMDAVEGLRV 49 (114)
Q Consensus 21 lLN~vwPNIfEtSphVi~av~~aie~lr~ 49 (114)
++||+|+++|++|..|++++.-..+.|-+
T Consensus 919 ~m~Yv~qGLFHPs~~VRk~ywtvyn~myv 947 (975)
T COG5181 919 MMKYVQQGLFHPSSTVRKRYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence 78999999999999999999887776644
No 9
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=56.91 E-value=37 Score=20.97 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=25.9
Q ss_pred cccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHH
Q psy10449 31 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVY 75 (114)
Q Consensus 31 EtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~Y 75 (114)
+++|.|+.....++. -+|.......+.+.|.+|.-+||..=
T Consensus 11 ~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a 51 (88)
T PF13646_consen 11 DPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAA 51 (88)
T ss_dssp SSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHH
Confidence 566666665555555 44555667777777777777776543
No 10
>PF05201 GlutR_N: Glutamyl-tRNAGlu reductase, N-terminal domain; InterPro: IPR015895 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the N-terminal domain of glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A.
Probab=52.77 E-value=22 Score=26.30 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhc--cccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHH
Q psy10449 15 EDALTHLLNYVW--PNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDV 74 (114)
Q Consensus 15 EDa~iHlLN~vw--PNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~ 74 (114)
+||+.||+...= -.+.=-=+.+..-|-+|.+..|-+=..|.+|+-++|--++-|||||+-
T Consensus 89 ~~a~~HLf~VasGLdS~V~GE~qIlgQvk~A~~~A~~~g~~g~~L~~lf~~Ai~~aKrvrte 150 (152)
T PF05201_consen 89 DEAVRHLFRVASGLDSMVVGEDQILGQVKRAYEFAREAGTTGPILNRLFQQAIRVAKRVRTE 150 (152)
T ss_dssp HHHHHHHHHHHTTTTSSSTT-HHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcchhhhcChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHc
Confidence 588888876431 000001256777788888888888888999999999999999999973
No 11
>KOG0213|consensus
Probab=48.92 E-value=13 Score=36.26 Aligned_cols=30 Identities=10% Similarity=0.349 Sum_probs=25.4
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHhhhH
Q psy10449 19 THLLNYVWPNIFETSPHLVQAFMDAVEGLR 48 (114)
Q Consensus 19 iHlLN~vwPNIfEtSphVi~av~~aie~lr 48 (114)
.-+|||+|+++|++|..|+.++..-.++|-
T Consensus 1112 ~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1112 QAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence 457999999999999999998877666653
No 12
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=47.13 E-value=11 Score=25.62 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHH
Q psy10449 19 THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR 55 (114)
Q Consensus 19 iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~ 55 (114)
-|+||+-.=.+.-|--.+.-++||++||++-+=.||.
T Consensus 2 k~~lnlyllgvvltllsifvrlmesle~llesp~pgs 38 (63)
T PF15220_consen 2 KHVLNLYLLGVVLTLLSIFVRLMESLEGLLESPSPGS 38 (63)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4788888777777777888899999999998887774
No 13
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=46.17 E-value=25 Score=30.14 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=29.2
Q ss_pred eeeecccCchHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhh
Q psy10449 6 VSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNS 81 (114)
Q Consensus 6 aLg~~GlG~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~ 81 (114)
|||-.| ..+++-.++-++--.. +.+++++.+.+.|+..++ .. -.++||+++|+||.+
T Consensus 513 aLgN~g--~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~-~~---------------~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 513 ALGNLG--HPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLA-KH---------------CPEKVREILLPIFMN 569 (618)
T ss_dssp HHHHHT---GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGG-GT----------------HHHHHHHHHHHHH-
T ss_pred HhhccC--CchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHh-hc---------------CcHHHHHHHHHHhcC
Confidence 455443 4444444443332222 447777776666655432 22 246888888888876
No 14
>PF05503 Pox_G7: Poxvirus G7-like ; InterPro: IPR008787 This family of proteins which include vaccinia virus G7L and fowlpox virus FPV120 are associated with the intracellualar mature virus particle. The function of this family of proteins is not known.
Probab=39.63 E-value=13 Score=32.51 Aligned_cols=12 Identities=50% Similarity=1.353 Sum_probs=10.2
Q ss_pred hHHHHhhhhhhh
Q psy10449 72 RDVYWKIYNSLY 83 (114)
Q Consensus 72 R~~YWkiYN~~Y 83 (114)
+.-|||+||++|
T Consensus 88 ~~EF~rLynsL~ 99 (363)
T PF05503_consen 88 SSEFWRLYNSLY 99 (363)
T ss_pred hHHHHHHHHHHH
Confidence 356999999998
No 15
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=39.53 E-value=53 Score=24.41 Aligned_cols=43 Identities=30% Similarity=0.545 Sum_probs=28.9
Q ss_pred HHhhccccccccHHHHHHHHHH-------------HhhhHHhhchHH-HHHHHHhhh
Q psy10449 22 LNYVWPNIFETSPHLVQAFMDA-------------VEGLRVALGPVR-ILQYVLQGL 64 (114)
Q Consensus 22 LN~vwPNIfEtSphVi~av~~a-------------ie~lr~alGp~~-~l~Y~lqGL 64 (114)
||-+.--=.=++|.||+|-+.| +||++.-.|+.. +.+|++|-|
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 4443333344899999977765 588888889888 899999865
No 16
>PHA03080 putative virion core protein; Provisional
Probab=38.88 E-value=16 Score=32.09 Aligned_cols=12 Identities=50% Similarity=1.340 Sum_probs=10.4
Q ss_pred hHHHHhhhhhhh
Q psy10449 72 RDVYWKIYNSLY 83 (114)
Q Consensus 72 R~~YWkiYN~~Y 83 (114)
+.-|||+||++|
T Consensus 89 ~~EF~rLynsL~ 100 (366)
T PHA03080 89 STEFWRLYNSLY 100 (366)
T ss_pred hHHHHHHHHHHH
Confidence 457999999998
No 17
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=30.99 E-value=40 Score=19.82 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=23.7
Q ss_pred eeeecccCchHHHHHHHHhhccccc----cccHHHHHHHHHHHh
Q psy10449 6 VSGVYGFGCEDALTHLLNYVWPNIF----ETSPHLVQAFMDAVE 45 (114)
Q Consensus 6 aLg~~GlG~EDa~iHlLN~vwPNIf----EtSphVi~av~~aie 45 (114)
+||....++.+.+-.++-.++|.+. ++++.|+.+...|+.
T Consensus 10 aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 10 ALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4555445566666555555555554 456677777766664
No 18
>PF10652 DUF2480: Protein of unknown function (DUF2480); InterPro: IPR018914 All the members of this family are uncharacterised proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (5.3.1.9 from EC). This could not, however, be confirmed.
Probab=30.97 E-value=31 Score=27.36 Aligned_cols=40 Identities=25% Similarity=0.674 Sum_probs=31.2
Q ss_pred HHHHHHhhhcccchhhhHH----HHhhhhhhhcc---CCCceeeccc
Q psy10449 56 ILQYVLQGLFHPARKVRDV----YWKIYNSLYIG---GQDALISAYP 95 (114)
Q Consensus 56 ~l~Y~lqGLFHPARkVR~~----YWkiYN~~Yi~---~~DalVp~YP 95 (114)
+-++++|||.==.+..|+. =|..|..-||. |.||+||..-
T Consensus 33 ik~~L~~GliLkEKdFR~~lk~~DWsqY~~~~Vai~CStDAIvP~WA 79 (167)
T PF10652_consen 33 IKDWLFEGLILKEKDFREFLKEHDWSQYQDKYVAIYCSTDAIVPAWA 79 (167)
T ss_pred cHHHHhhhhhhhhHHHHHHHHhcCHHHhCCcEEEEEcccceehhhhH
Confidence 4578899997766666654 59999999985 9999999653
No 19
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.73 E-value=88 Score=26.88 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=31.7
Q ss_pred eeeecccC-chHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhh
Q psy10449 6 VSGVYGFG-CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNS 81 (114)
Q Consensus 6 aLg~~GlG-~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~ 81 (114)
|||-.|.. ..+++..++. +=-+.+++++.+.+.|+.- ++- +-.++||+..++||.+
T Consensus 469 aLGN~g~~~~i~~l~~~l~----~~~~~~~~iR~~Av~Alr~--~a~--------------~~p~~v~~~l~~i~~n 525 (574)
T smart00638 469 ALGNAGHPSSIKVLEPYLE----GAEPLSTFIRLAAILALRN--LAK--------------RDPRKVQEVLLPIYLN 525 (574)
T ss_pred hhhccCChhHHHHHHHhcC----CCCCCCHHHHHHHHHHHHH--HHH--------------hCchHHHHHHHHHHcC
Confidence 67766552 2234444332 2235677887665555552 221 1246889999998875
No 20
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=42 Score=27.44 Aligned_cols=37 Identities=32% Similarity=0.570 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcccch-----------hhhHHHHhhhhhhhccCCCceeec
Q psy10449 55 RILQYVLQGLFHPAR-----------KVRDVYWKIYNSLYIGGQDALISA 93 (114)
Q Consensus 55 ~~l~Y~lqGLFHPAR-----------kVR~~YWkiYN~~Yi~~~DalVp~ 93 (114)
.-|--+++||-+|+. ++|+.| -.+-.|+|+|++|=+-
T Consensus 42 TtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~--~~~l~yLGH~~giK~e 89 (209)
T COG4133 42 TTLLRILAGLLRPDAGEVYWQGEPIQNVRESY--HQALLYLGHQPGIKTE 89 (209)
T ss_pred HHHHHHHHcccCCCCCeEEecCCCCccchhhH--HHHHHHhhccccccch
Confidence 456778999988764 677766 4789999999998653
No 21
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=28.82 E-value=89 Score=26.14 Aligned_cols=60 Identities=15% Similarity=0.310 Sum_probs=45.2
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhh-cccchhhhHHHH
Q psy10449 17 ALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL-FHPARKVRDVYW 76 (114)
Q Consensus 17 a~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGL-FHPARkVR~~YW 76 (114)
++-=++--++|++=|++-.+-++++.-+|.++.++|+-.+++=+|--+ -+|++|.-..-|
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~sp~~Rl~al~~ 195 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIITSPSRRLGALNY 195 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCcchhHHHHHH
Confidence 444566788999998888889999999999999999995555555443 467776655444
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=28.56 E-value=1.4e+02 Score=25.86 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhHHhhchH----HHHHHHHhhhcccchhhhHHHHh-hhhh
Q psy10449 34 PHLVQAFMDAVEGLRVALGPV----RILQYVLQGLFHPARKVRDVYWK-IYNS 81 (114)
Q Consensus 34 phVi~av~~aie~lr~alGp~----~~l~Y~lqGLFHPARkVR~~YWk-iYN~ 81 (114)
+..++.+.+.++-+=-..-|. ....++.+||.||..+||+--=+ +-|.
T Consensus 52 ~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~ 104 (503)
T PF10508_consen 52 REQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRI 104 (503)
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444444444444444444443 56789999999999999987433 5443
No 23
>PF12672 DUF3793: Protein of unknown function (DUF3793); InterPro: IPR024523 This family of bacterial proteins is functionally uncharacterised. The proteins in this family contain two conserved sequence motifs: PHE and LGYP.
Probab=26.16 E-value=17 Score=27.83 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=8.2
Q ss_pred hHHHHhhhhhh
Q psy10449 72 RDVYWKIYNSL 82 (114)
Q Consensus 72 R~~YWkiYN~~ 82 (114)
-.-|||||++.
T Consensus 133 ~~GyWKVY~n~ 143 (176)
T PF12672_consen 133 CCGYWKVYGNP 143 (176)
T ss_pred EeccCccCCCH
Confidence 35699999863
No 24
>COG2307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.15 E-value=65 Score=27.66 Aligned_cols=34 Identities=32% Similarity=0.605 Sum_probs=29.6
Q ss_pred HHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHH----HhhhhhhhccCCC
Q psy10449 38 QAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVY----WKIYNSLYIGGQD 88 (114)
Q Consensus 38 ~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~Y----WkiYN~~Yi~~~D 88 (114)
.+++.+||+.|.+ ||.||+.. |-.-|.+|..-++
T Consensus 81 ~Sl~ssl~~ar~n-----------------Ar~VR~~ls~etWe~LN~~~~~~~~ 118 (313)
T COG2307 81 SSLVSSLEAAREN-----------------ARAVRDRLSSETWEALNELYLALKR 118 (313)
T ss_pred HHHHHHHHHHHHH-----------------HHHHHhccCHHHHHHHHHHHHHHhh
Confidence 4899999999987 99999986 9999999987665
No 25
>PF15592 Imm22: Immunity protein 22
Probab=25.19 E-value=40 Score=24.50 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=12.6
Q ss_pred hHHHHhhhhhhhccCC
Q psy10449 72 RDVYWKIYNSLYIGGQ 87 (114)
Q Consensus 72 R~~YWkiYN~~Yi~~~ 87 (114)
++.|||++|.++--.+
T Consensus 26 ~~~fwkLe~~l~~l~~ 41 (116)
T PF15592_consen 26 DDAFWKLENDLRELAS 41 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999998875544
No 26
>PHA02999 Hypothetical protein; Provisional
Probab=22.72 E-value=38 Score=29.95 Aligned_cols=13 Identities=54% Similarity=1.234 Sum_probs=11.6
Q ss_pred HHHHhhccccccc
Q psy10449 20 HLLNYVWPNIFET 32 (114)
Q Consensus 20 HlLN~vwPNIfEt 32 (114)
-||||+.||+||.
T Consensus 181 sLm~YmFPnLF~d 193 (382)
T PHA02999 181 SLMNYMFPNLFED 193 (382)
T ss_pred HHHHHhCchhccC
Confidence 4899999999995
No 27
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=22.55 E-value=30 Score=19.97 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=15.3
Q ss_pred eeeeeccc--CchHHHHHHHHhhccccccccHHHHH
Q psy10449 5 IVSGVYGF--GCEDALTHLLNYVWPNIFETSPHLVQ 38 (114)
Q Consensus 5 laLg~~Gl--G~EDa~iHlLN~vwPNIfEtSphVi~ 38 (114)
++||.+.. |.||++- ++.|-+.+++-.++|
T Consensus 4 lgLGl~~aGs~~~~~~~----~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 4 LGLGLIYAGSGNEEVLD----LLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHTTTT--HHHHH----HHHHHHCTSSHHHHH
T ss_pred HHHHHHHcCCCCHHHHH----HHHHHHHhccccccC
Confidence 45665544 5565554 444445666655543
No 28
>KOG4144|consensus
Probab=21.98 E-value=28 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.2
Q ss_pred hhhhhhccCCCceeecccCcc
Q psy10449 78 IYNSLYIGGQDALISAYPRIQ 98 (114)
Q Consensus 78 iYN~~Yi~~~DalVp~YP~~~ 98 (114)
+=|.+-+-+.|+|||||-++.
T Consensus 135 i~~r~~Li~h~pLvPFYEr~g 155 (190)
T KOG4144|consen 135 IVRRAALICHDPLVPFYERFG 155 (190)
T ss_pred cccceeeeecCCccchhHhcC
Confidence 345777889999999999885
No 29
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=21.89 E-value=1.2e+02 Score=25.89 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHH
Q psy10449 34 PHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDV 74 (114)
Q Consensus 34 phVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~ 74 (114)
|.+..-+=+|.+.-|-.=..|..|+.+.|--|+-|||||.-
T Consensus 108 ~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRte 148 (338)
T PRK00676 108 TEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSK 148 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhh
Confidence 34444455555555555566789999999999999999974
No 30
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=21.87 E-value=38 Score=22.56 Aligned_cols=39 Identities=21% Similarity=0.460 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhh
Q psy10449 33 SPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNS 81 (114)
Q Consensus 33 SphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~ 81 (114)
||.=..+..+|++.+|-+||+.+. |.+.++++=|+-|..
T Consensus 21 s~ed~~~L~~~l~~vr~~Lg~~~~----------~e~~i~eal~~~~fD 59 (79)
T PF08938_consen 21 SPEDQAQLYSCLPQVREVLGDYVP----------PEEQIKEALWHYYFD 59 (79)
T ss_dssp TCHHHHHHCHHCCCHHHHCCCCC------------CCHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHHHHHHHHcccCC----------CHHHHHHHHHHHcCC
Confidence 344455778899999999999754 889999999987764
No 31
>KOG2032|consensus
Probab=21.67 E-value=70 Score=29.46 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=40.5
Q ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhc-ccchhhhH
Q psy10449 16 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF-HPARKVRD 73 (114)
Q Consensus 16 Da~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLF-HPARkVR~ 73 (114)
+...|++|.-||+++|+.+..-.++.+..+.--...-=+-.+.=.+|-|. .|+-.|++
T Consensus 462 t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~ 520 (533)
T KOG2032|consen 462 TEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTD 520 (533)
T ss_pred HhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHH
Confidence 56689999999999999999999988877655444444445555555553 33334444
No 32
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=20.67 E-value=1.8e+02 Score=21.47 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=25.8
Q ss_pred ccccHHHHHHHHHH-------------HhhhHHhhch-HHHHHHHHhhh
Q psy10449 30 FETSPHLVQAFMDA-------------VEGLRVALGP-VRILQYVLQGL 64 (114)
Q Consensus 30 fEtSphVi~av~~a-------------ie~lr~alGp-~~~l~Y~lqGL 64 (114)
.=+||.||.|-+.| +||++.-.|. .-+.+|++|-|
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqei 86 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEI 86 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHH
Confidence 34899999977766 5778877774 45688888755
No 33
>KOG3877|consensus
Probab=20.50 E-value=66 Score=28.37 Aligned_cols=31 Identities=39% Similarity=0.464 Sum_probs=25.4
Q ss_pred chHHHHHHHHhhccccccccHHHHHHHHHHH
Q psy10449 14 CEDALTHLLNYVWPNIFETSPHLVQAFMDAV 44 (114)
Q Consensus 14 ~EDa~iHlLN~vwPNIfEtSphVi~av~~ai 44 (114)
+-||+.|+||-==--++|.|||-=--++||+
T Consensus 160 Y~dAL~HiL~TGQGVVLERsp~SDFVF~eAM 190 (393)
T KOG3877|consen 160 YLDALAHILNTGQGVVLERSPHSDFVFAEAM 190 (393)
T ss_pred HHHHHHHHHhcCCeEEEecCcchhHHHHHHH
Confidence 4599999999877778999999776666665
No 34
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=20.15 E-value=68 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=22.3
Q ss_pred HHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHH
Q psy10449 38 QAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVY 75 (114)
Q Consensus 38 ~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~Y 75 (114)
..|-+||++|.+.=+ .+=-||-||++.+|
T Consensus 52 ~~Id~Al~aLs~~~~---------~~drHPErR~KAAy 80 (122)
T PF06244_consen 52 SGIDDALDALSLTDK---------PIDRHPERRMKAAY 80 (122)
T ss_pred ccHHHHHHHcccCCC---------CCCCCcchhHHHHH
Confidence 468889999865544 45589999998887
No 35
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=20.06 E-value=57 Score=23.05 Aligned_cols=12 Identities=50% Similarity=1.093 Sum_probs=10.8
Q ss_pred CchHHHHHHHHh
Q psy10449 13 GCEDALTHLLNY 24 (114)
Q Consensus 13 G~EDa~iHlLN~ 24 (114)
||.|.+.||+++
T Consensus 28 gC~dp~~HL~~l 39 (122)
T PF02957_consen 28 GCGDPIAHLLAL 39 (122)
T ss_pred CCCCHHHHHHHH
Confidence 899999999983
No 36
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.04 E-value=3.8e+02 Score=21.37 Aligned_cols=63 Identities=29% Similarity=0.314 Sum_probs=42.1
Q ss_pred chHHHHHHHHhhccccc--cccHHHHHHHHHHHhhhHHhh-ch----------HHHHHHHHhhhcccch----hhhHHHH
Q psy10449 14 CEDALTHLLNYVWPNIF--ETSPHLVQAFMDAVEGLRVAL-GP----------VRILQYVLQGLFHPAR----KVRDVYW 76 (114)
Q Consensus 14 ~EDa~iHlLN~vwPNIf--EtSphVi~av~~aie~lr~al-Gp----------~~~l~Y~lqGLFHPAR----kVR~~YW 76 (114)
.|||+...|.+ .|++. +.|+++++....|+-.+--.. .. -.+..=++++++|..+ ++|..+-
T Consensus 167 ~~~al~~~L~~-LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 167 FEDALFPCLYY-LPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred HHHHHHHHhhc-CCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 56777776654 47766 478999999999988873332 11 1344558899888887 5555554
Q ss_pred h
Q psy10449 77 K 77 (114)
Q Consensus 77 k 77 (114)
+
T Consensus 246 ~ 246 (282)
T PF10521_consen 246 Q 246 (282)
T ss_pred H
Confidence 4
Done!