Query psy10449
Match_columns 114
No_of_seqs 106 out of 152
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 18:28:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 92.5 0.41 1.4E-05 34.1 6.6 81 16-96 94-176 (242)
2 2x1g_F Cadmus; transport prote 88.1 0.16 5.5E-06 43.2 1.4 89 6-98 487-586 (971)
3 2qk1_A Protein STU2; STU2P, XM 87.9 0.079 2.7E-06 39.6 -0.5 78 20-97 100-192 (249)
4 1wa5_C Importin alpha RE-expor 85.5 0.61 2.1E-05 40.2 3.6 77 21-97 456-549 (960)
5 2x19_B Importin-13; nuclear tr 84.7 0.54 1.8E-05 39.7 2.8 90 5-97 471-569 (963)
6 4fdd_A Transportin-1; heat rep 81.5 1.2 4.2E-05 37.2 3.7 92 5-97 381-484 (852)
7 3ibv_A Exportin-T; karyopherin 81.3 1.2 4.1E-05 39.9 3.8 66 32-97 507-579 (980)
8 2qk1_A Protein STU2; STU2P, XM 80.6 1.9 6.6E-05 32.0 4.2 68 31-99 157-236 (249)
9 2qk2_A LP04448P; mini spindles 79.7 3.4 0.00012 29.2 5.1 77 21-98 134-220 (242)
10 1ibr_B P95, importin beta-1 su 73.9 4.3 0.00015 30.1 4.4 66 15-80 361-434 (462)
11 2bpt_A Importin beta-1 subunit 71.9 6.1 0.00021 32.1 5.2 91 6-97 392-499 (861)
12 1b3u_A Protein (protein phosph 71.0 12 0.00042 28.6 6.5 55 21-75 403-461 (588)
13 1b3u_A Protein (protein phosph 70.9 11 0.00038 28.8 6.2 71 13-83 473-547 (588)
14 1qgr_A Protein (importin beta 70.5 3.6 0.00012 33.4 3.6 91 6-97 389-506 (876)
15 1qgr_A Protein (importin beta 63.5 7.8 0.00027 31.5 4.2 66 15-80 361-433 (876)
16 4fdd_A Transportin-1; heat rep 57.7 15 0.00051 30.7 5.1 66 32-97 598-671 (852)
17 4ffb_C Protein STU2; tubulin f 53.8 36 0.0012 24.7 6.1 69 22-90 141-218 (278)
18 2of3_A ZYG-9; multifunctional 48.1 27 0.00091 27.3 4.9 48 35-82 147-194 (266)
19 4evf_A Alpha-1 giardin, giardi 45.3 40 0.0014 25.9 5.5 60 14-82 213-272 (295)
20 2of3_A ZYG-9; multifunctional 42.0 83 0.0028 24.5 6.8 68 16-83 79-160 (266)
21 3ltj_A Alpharep-4; protein eng 41.9 55 0.0019 21.8 5.1 43 31-77 118-160 (201)
22 2bpt_A Importin beta-1 subunit 41.3 18 0.00063 29.3 3.0 66 32-97 651-724 (861)
23 1ibr_B P95, importin beta-1 su 36.9 12 0.00042 27.6 1.3 61 5-65 388-457 (462)
24 1u6g_C TIP120 protein, CAND1; 36.5 30 0.001 30.2 3.8 68 30-97 529-611 (1230)
25 1u6g_C TIP120 protein, CAND1; 36.3 55 0.0019 28.6 5.4 81 16-96 82-175 (1230)
26 3ltm_A Alpha-REP4; protein eng 35.4 79 0.0027 21.1 5.1 42 31-76 123-164 (211)
27 1te4_A Conserved protein MTH18 35.2 86 0.0029 19.9 6.1 40 31-74 53-92 (131)
28 4ffb_C Protein STU2; tubulin f 32.6 94 0.0032 22.4 5.4 66 18-83 96-167 (278)
29 3a6p_A Exportin-5; exportin-5, 31.5 41 0.0014 30.5 3.9 67 32-98 544-627 (1204)
30 3ltm_A Alpha-REP4; protein eng 24.7 1.6E+02 0.0054 19.6 5.2 63 30-98 91-153 (211)
31 3iz5_e 60S ribosomal protein L 22.6 24 0.00083 27.7 0.7 25 6-32 174-209 (244)
32 3hxi_A Eukaryotic translation 22.1 29 0.001 25.8 1.1 11 73-83 43-53 (189)
33 2idr_A Eukaryotic translation 20.6 33 0.0011 25.0 1.0 12 73-84 38-49 (177)
34 1l8b_A Eukaryotic translation 20.0 34 0.0012 25.2 1.0 11 73-83 43-53 (190)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.46 E-value=0.41 Score=34.10 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=62.6
Q ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhhhccC-CC-ceeec
Q psy10449 16 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGG-QD-ALISA 93 (114)
Q Consensus 16 Da~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~-~D-alVp~ 93 (114)
.-...++..++..+=+++++|+++..+|++++--..+...++.-++++|-|+..+||+.=...-..+--.+ .+ ...++
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 44455666666666678999999999999999999999999999999999999999998888777654332 22 23445
Q ss_pred ccC
Q psy10449 94 YPR 96 (114)
Q Consensus 94 YP~ 96 (114)
+|.
T Consensus 174 l~~ 176 (242)
T 2qk2_A 174 LKL 176 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 2
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=88.06 E-value=0.16 Score=43.24 Aligned_cols=89 Identities=11% Similarity=-0.002 Sum_probs=66.9
Q ss_pred eeeecccCch----HHHHHHHHhhcccccc--ccHHHHHHHHHHHhhhHHhhchH-----HHHHHHHhhhcccchhhhHH
Q psy10449 6 VSGVYGFGCE----DALTHLLNYVWPNIFE--TSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFHPARKVRDV 74 (114)
Q Consensus 6 aLg~~GlG~E----Da~iHlLN~vwPNIfE--tSphVi~av~~aie~lr~alGp~-----~~l~Y~lqGLFHPARkVR~~ 74 (114)
++|+.+-||. +.+-.+++ +.|.+.. +.|+|..+.+.++-.++-.+++. .++++++.|| + .+|+..
T Consensus 487 ~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~ 562 (971)
T 2x1g_F 487 SFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQ 562 (971)
T ss_dssp HHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHH
T ss_pred HHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHH
Confidence 5677777765 35566777 6677773 48999999999999999988843 6789999999 5 678888
Q ss_pred HHhhhhhhhccCCCceeecccCcc
Q psy10449 75 YWKIYNSLYIGGQDALISAYPRIQ 98 (114)
Q Consensus 75 YWkiYN~~Yi~~~DalVp~YP~~~ 98 (114)
-....-++==.+.+.|.||+|.+-
T Consensus 563 A~~al~~l~~~~~~~l~p~~~~ll 586 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYADPLL 586 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHH
Confidence 777777666667778999998663
No 3
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.94 E-value=0.079 Score=39.59 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=63.7
Q ss_pred HHHHhhcccccc----ccHHHHHHHHHHHhhhHHhh------c-hHHHHHHHHhhhcccchhhhHHHHhhhhhhhccCC-
Q psy10449 20 HLLNYVWPNIFE----TSPHLVQAFMDAVEGLRVAL------G-PVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQ- 87 (114)
Q Consensus 20 HlLN~vwPNIfE----tSphVi~av~~aie~lr~al------G-p~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~~- 87 (114)
.....++|.++| ..+.|.++...|++++--+. + +..+|.-++++|=|+..+||+.--+.-.++.-.+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 555666777766 46889999999999999999 6 77899999999999999999999888888776666
Q ss_pred --Cceeecc-cCc
Q psy10449 88 --DALISAY-PRI 97 (114)
Q Consensus 88 --DalVp~Y-P~~ 97 (114)
+.+.|++ |.+
T Consensus 180 ~~~~l~~~l~~~i 192 (249)
T 2qk1_A 180 GYSTLQRYLKDEV 192 (249)
T ss_dssp CSHHHHHHHTTTH
T ss_pred cchhHHHHHHHHH
Confidence 4577777 654
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=85.50 E-value=0.61 Score=40.18 Aligned_cols=77 Identities=8% Similarity=0.002 Sum_probs=58.1
Q ss_pred HHHhhccccccc---cHHHHHHHHHHHhhhHHhhchH---HHHHHHHhhhcccchhhhHHHHhhhhhhhcc---------
Q psy10449 21 LLNYVWPNIFET---SPHLVQAFMDAVEGLRVALGPV---RILQYVLQGLFHPARKVRDVYWKIYNSLYIG--------- 85 (114)
Q Consensus 21 lLN~vwPNIfEt---SphVi~av~~aie~lr~alGp~---~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~--------- 85 (114)
+.+.+.|.+-.+ .|.|+.+.+.++--++--+.|. .+++.++++|-++..+||..-+....++-=.
T Consensus 456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 346778877666 8999999999999888877654 5677888899899899998777766653211
Q ss_pred --CCCceeecccCc
Q psy10449 86 --GQDALISAYPRI 97 (114)
Q Consensus 86 --~~DalVp~YP~~ 97 (114)
+.+.+.||.|.+
T Consensus 536 ~~~~~~l~p~l~~l 549 (960)
T 1wa5_C 536 IFHKEDISNSTEIL 549 (960)
T ss_dssp SSCGGGTTTTHHHH
T ss_pred cccHHHhhhhHHHH
Confidence 345688888854
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=84.66 E-value=0.54 Score=39.68 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=66.7
Q ss_pred eeeeecccCch----HHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchH-----HHHHHHHhhhcccchhhhHHH
Q psy10449 5 IVSGVYGFGCE----DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFHPARKVRDVY 75 (114)
Q Consensus 5 laLg~~GlG~E----Da~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~-----~~l~Y~lqGLFHPARkVR~~Y 75 (114)
+|+|+.+-||. +.+..+++ +.+++-++.|+|..+.+.++..++-.++.. .++++++++|-+ .+||..=
T Consensus 471 ~al~~i~~~~~~~~~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A 547 (963)
T 2x19_B 471 YGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSS 547 (963)
T ss_dssp HHHHHHTTSCCSSCCSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHH
T ss_pred HHHHHHHhhcCchhhHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHH
Confidence 35666666654 45566676 567787789999999999999998877632 567888888866 5788766
Q ss_pred HhhhhhhhccCCCceeecccCc
Q psy10449 76 WKIYNSLYIGGQDALISAYPRI 97 (114)
Q Consensus 76 WkiYN~~Yi~~~DalVp~YP~~ 97 (114)
.....++=-.+.+.|+||.|.+
T Consensus 548 ~~al~~l~~~~~~~l~p~~~~i 569 (963)
T 2x19_B 548 VSTLKKICRECKYDLPPYAANI 569 (963)
T ss_dssp HHHHHHHHHHTGGGCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 6666666556778899998866
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=81.46 E-value=1.2 Score=37.24 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=64.5
Q ss_pred eeeeecccCchHHH----HHHHHhhccccccccHHHHHHHHHHHhhhHHhhch-------HHHHHHHHhhhcccchhhhH
Q psy10449 5 IVSGVYGFGCEDAL----THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFHPARKVRD 73 (114)
Q Consensus 5 laLg~~GlG~EDa~----iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp-------~~~l~Y~lqGLFHPARkVR~ 73 (114)
.|||...-||.+.+ -.++..+.+-+-+++|+|+.+...++..+--.+++ ..+++.++++|-.+..+||+
T Consensus 381 ~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~ 460 (852)
T 4fdd_A 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 460 (852)
T ss_dssp HHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 36777777776543 34555555666679999999999999887776665 26778888888777778876
Q ss_pred -HHHhhhhhhhccCCCceeecccCc
Q psy10449 74 -VYWKIYNSLYIGGQDALISAYPRI 97 (114)
Q Consensus 74 -~YWkiYN~~Yi~~~DalVp~YP~~ 97 (114)
+.|-+-|-+ -...+.+.||+|.+
T Consensus 461 ~a~~aL~~l~-~~~~~~l~~~l~~l 484 (852)
T 4fdd_A 461 AACSAFATLE-EEACTELVPYLAYI 484 (852)
T ss_dssp HHHHHHHHHH-HHHGGGGGGGHHHH
T ss_pred HHHHHHHHHH-HHhhHhhHhHHHHH
Confidence 455555433 23345688888865
No 7
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.28 E-value=1.2 Score=39.86 Aligned_cols=66 Identities=11% Similarity=0.267 Sum_probs=54.6
Q ss_pred ccHHHHHHHHHHHhhhHHhhchH-----HHHHHHHh--hhcccchhhhHHHHhhhhhhhccCCCceeecccCc
Q psy10449 32 TSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQ--GLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRI 97 (114)
Q Consensus 32 tSphVi~av~~aie~lr~alGp~-----~~l~Y~lq--GLFHPARkVR~~YWkiYN~~Yi~~~DalVp~YP~~ 97 (114)
+-|.|....++.+....--+... .+|++++. |+.||.+|||..=|..+.++-=.+...|+|+.+.+
T Consensus 507 ~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~i 579 (980)
T 3ibv_A 507 PHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESS 579 (980)
T ss_dssp CCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 45889999998887766555432 78999999 99999999999999999998888888888876644
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=80.62 E-value=1.9 Score=31.96 Aligned_cols=68 Identities=10% Similarity=0.200 Sum_probs=56.8
Q ss_pred cccHHHHHHHHHHHhhhHHhhc----------hHHHHHHHHhhhcccchhhhHHHHhhhhhhh--ccCCCceeecccCcc
Q psy10449 31 ETSPHLVQAFMDAVEGLRVALG----------PVRILQYVLQGLFHPARKVRDVYWKIYNSLY--IGGQDALISAYPRIQ 98 (114)
Q Consensus 31 EtSphVi~av~~aie~lr~alG----------p~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Y--i~~~DalVp~YP~~~ 98 (114)
...|.+.+..+..|..+--+-+ +..++..+.+.|.++.+.||+.=|.....++ +|. +.+-|+-|.++
T Consensus 157 ~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~-~~~~p~l~~Ld 235 (249)
T 2qk1_A 157 HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM-NTFVKTLEHLD 235 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS-GGGHHHHHHSC
T ss_pred CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHh
Confidence 3579999999999988887776 2457888899999999999999999999998 664 45899988884
Q ss_pred c
Q psy10449 99 N 99 (114)
Q Consensus 99 ~ 99 (114)
+
T Consensus 236 ~ 236 (249)
T 2qk1_A 236 N 236 (249)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=79.74 E-value=3.4 Score=29.23 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHhhccccccccHHHHHHHHHHHhhhHHhhchH--------HHHHHHHhhhcccchhhhHHHHhhhhhhh--ccCCCce
Q psy10449 21 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV--------RILQYVLQGLFHPARKVRDVYWKIYNSLY--IGGQDAL 90 (114)
Q Consensus 21 lLN~vwPNIfEtSphVi~av~~aie~lr~alGp~--------~~l~Y~lqGLFHPARkVR~~YWkiYN~~Y--i~~~Dal 90 (114)
++..+...+-+.+|.|.+..++.+..+-...||. .++..+.+.|-++..+||+.=.+..-.++ +| .+.+
T Consensus 134 ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg-~~~~ 212 (242)
T 2qk2_A 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG-DKAV 212 (242)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC-HHHH
Confidence 3444455556789999999999999876666654 68899999999999999998777666666 34 4568
Q ss_pred eecccCcc
Q psy10449 91 ISAYPRIQ 98 (114)
Q Consensus 91 Vp~YP~~~ 98 (114)
.|+-|.++
T Consensus 213 ~~~l~~L~ 220 (242)
T 2qk2_A 213 TPLLADVD 220 (242)
T ss_dssp GGGGTTSC
T ss_pred HHHHHhcC
Confidence 88888874
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=73.89 E-value=4.3 Score=30.09 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhch-------HHHHHHHHhhhcccchhhhHH-HHhhhh
Q psy10449 15 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFHPARKVRDV-YWKIYN 80 (114)
Q Consensus 15 EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp-------~~~l~Y~lqGLFHPARkVR~~-YWkiYN 80 (114)
++.+-.++..+-..+-++.+.++.+.+.++-++--...+ ..++..+.+.|-+|..+||.. -|-+=+
T Consensus 361 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (462)
T ss_dssp TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 567777888887788788999999999888877654432 247888999999998899864 454433
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=71.94 E-value=6.1 Score=32.07 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=59.5
Q ss_pred eeeecccCch-HHHH----HHHHhhccccccccHHHHHHHHHHHhhhHHhhchH--------HHHHHHHhhhcccchhhh
Q psy10449 6 VSGVYGFGCE-DALT----HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV--------RILQYVLQGLFHPARKVR 72 (114)
Q Consensus 6 aLg~~GlG~E-Da~i----HlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~--------~~l~Y~lqGLFHPARkVR 72 (114)
+||...-|+. +.+. .++..+.+-+-+++|.|+.+...++..+--.+++. .++..++++|-.+ .+||
T Consensus 392 ~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~ 470 (861)
T 2bpt_A 392 AFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVA 470 (861)
T ss_dssp HHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHH
Confidence 4566666763 4333 34444555555789999999999998888877752 5778888888776 5666
Q ss_pred H-HHHhhhhhhhccC---CCceeecccCc
Q psy10449 73 D-VYWKIYNSLYIGG---QDALISAYPRI 97 (114)
Q Consensus 73 ~-~YWkiYN~~Yi~~---~DalVp~YP~~ 97 (114)
. +-|-+.+-+=.-. .+.+.||+|.+
T Consensus 471 ~~a~~al~~l~~~~~~~~~~~l~~~~~~i 499 (861)
T 2bpt_A 471 TNCSWTIINLVEQLAEATPSPIYNFYPAL 499 (861)
T ss_dssp HHHHHHHHHHHHHHSSSSSCGGGGGHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 5 4555554332211 36678888754
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=71.02 E-value=12 Score=28.61 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHhhccccccccHHHHHHHHHHHhhhHHhhchH----HHHHHHHhhhcccchhhhHHH
Q psy10449 21 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV----RILQYVLQGLFHPARKVRDVY 75 (114)
Q Consensus 21 lLN~vwPNIfEtSphVi~av~~aie~lr~alGp~----~~l~Y~lqGLFHPARkVR~~Y 75 (114)
++..+..-+-+.+..|+.+.++++..+--.+|+. .++..+++.|-++...||+.=
T Consensus 403 ~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3333333344567888888888888888888874 567777788888888888653
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=70.88 E-value=11 Score=28.84 Aligned_cols=71 Identities=18% Similarity=0.026 Sum_probs=51.1
Q ss_pred CchHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchH----HHHHHHHhhhcccchhhhHHHHhhhhhhh
Q psy10449 13 GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV----RILQYVLQGLFHPARKVRDVYWKIYNSLY 83 (114)
Q Consensus 13 G~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~----~~l~Y~lqGLFHPARkVR~~YWkiYN~~Y 83 (114)
|.++.+-.++..+..-.-++++.++.+.++++..+--++|+. .++..+++.|-.|.+.||..-.+....+.
T Consensus 473 ~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp CHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred CchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHH
Confidence 444443444444444445678999999999999999889986 45566777778999999987777666654
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=70.54 E-value=3.6 Score=33.44 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=58.4
Q ss_pred eeeecccCch-HHH----HHHHHhhccccccccHHHHHHHHHHHhhhHHhhchH--------HHHHHHHhhhcccchhhh
Q psy10449 6 VSGVYGFGCE-DAL----THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV--------RILQYVLQGLFHPARKVR 72 (114)
Q Consensus 6 aLg~~GlG~E-Da~----iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~--------~~l~Y~lqGLFHPARkVR 72 (114)
+||..+-|+. +.+ -.++..+.+.+-+++|.|+.+...++..+.-.+++. .+++-++.+|-++ .+||
T Consensus 389 ~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~ 467 (876)
T 1qgr_A 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVA 467 (876)
T ss_dssp HHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5566666664 433 234444555555788999999999999888877652 5677788888776 6777
Q ss_pred HHHHhhhhhhhcc--------------CCCceeecccCc
Q psy10449 73 DVYWKIYNSLYIG--------------GQDALISAYPRI 97 (114)
Q Consensus 73 ~~YWkiYN~~Yi~--------------~~DalVp~YP~~ 97 (114)
+.--+..-++--. +.+.+.||+|.+
T Consensus 468 ~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 506 (876)
T 1qgr_A 468 SNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELI 506 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHH
Confidence 6644433333221 234688888754
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=63.49 E-value=7.8 Score=31.51 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchH-------HHHHHHHhhhcccchhhhHHHHhhhh
Q psy10449 15 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-------RILQYVLQGLFHPARKVRDVYWKIYN 80 (114)
Q Consensus 15 EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~-------~~l~Y~lqGLFHPARkVR~~YWkiYN 80 (114)
++.+-.+++++-..+-++++.++.+.+.++-.+--..+|. .++..+++.|-+|..+||+.--....
T Consensus 361 ~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4566677888888888899999999999998777666643 36778888899999999965444433
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=57.75 E-value=15 Score=30.74 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHhhhHHhhchH--------HHHHHHHhhhcccchhhhHHHHhhhhhhhccCCCceeecccCc
Q psy10449 32 TSPHLVQAFMDAVEGLRVALGPV--------RILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRI 97 (114)
Q Consensus 32 tSphVi~av~~aie~lr~alGp~--------~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~~DalVp~YP~~ 97 (114)
+...++...++++.++--.+|.. .++..+++.+-+|...||+...++...+=-...+.+.||.|.+
T Consensus 598 ~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~ 671 (852)
T 4fdd_A 598 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADF 671 (852)
T ss_dssp CCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 36778888899999999888865 4688889999999999999999988887666667777776654
No 17
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=53.84 E-value=36 Score=24.68 Aligned_cols=69 Identities=25% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHhhccccccccHHHHHHHHHHHhhhHHhhchH-----H----HHHHHHhhhcccchhhhHHHHhhhhhhhccCCCce
Q psy10449 22 LNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----R----ILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDAL 90 (114)
Q Consensus 22 LN~vwPNIfEtSphVi~av~~aie~lr~alGp~-----~----~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~~Dal 90 (114)
+..+.+..=..+|+++.+.+..+..+--.+|+. . ++..+...|-|+...||+.==++.=.+|-.-.+..
T Consensus 141 ~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 345556556679999999888888776666653 2 45567778899999999987777666665444433
No 18
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=48.13 E-value=27 Score=27.29 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhh
Q psy10449 35 HLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSL 82 (114)
Q Consensus 35 hVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~ 82 (114)
.|++++-+.+-.+.-..+|..++.|+..|+-|=.-|+|+-.=..-.++
T Consensus 147 ~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 147 NMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 356677777777888889999999999999999999998876554443
No 19
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A
Probab=45.29 E-value=40 Score=25.88 Aligned_cols=60 Identities=10% Similarity=0.034 Sum_probs=41.6
Q ss_pred chHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhh
Q psy10449 14 CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSL 82 (114)
Q Consensus 14 ~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~ 82 (114)
.+++|.++++.+. .+..+.-...-+|+.|+ .-...+.-+..-+...+.+|++.| +.|.++
T Consensus 213 ~~~~Ll~iv~~~~----~~~~~~A~~L~~am~g~----td~~~l~Rivr~~~~r~~~ik~~Y-~~yg~L 272 (295)
T 4evf_A 213 DYYTFYCAHFALL----GMHRLAAYLINCACNDK----GDEKRMRRITGMMVDKCLGAKHAY-KIYGDM 272 (295)
T ss_dssp HHHHHHHHHHHHH----CHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHGGGCTTHHHHG-GGTCCH
T ss_pred HHHHHHHHHHHhC----CHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHhCHHHHHHHHH-HHhCcH
Confidence 5788888888773 34444445567777776 345555556555666777999999 999875
No 20
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=42.04 E-value=83 Score=24.46 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcc----ccccccHHHHHHHHHHHhhhHHhhch----------HHHHHHHHhhhcccchhhhHHHHhhhhh
Q psy10449 16 DALTHLLNYVWP----NIFETSPHLVQAFMDAVEGLRVALGP----------VRILQYVLQGLFHPARKVRDVYWKIYNS 81 (114)
Q Consensus 16 Da~iHlLN~vwP----NIfEtSphVi~av~~aie~lr~alGp----------~~~l~Y~lqGLFHPARkVR~~YWkiYN~ 81 (114)
+.++..+-++.+ .+|++.+.|.++.++.+.++--.++- +.++.+++.=|=|+-.+||+.--.+...
T Consensus 79 ~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~ 158 (266)
T 2of3_A 79 RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158 (266)
T ss_dssp HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 444444444444 56899999999999999998554432 5889999999999999999998887766
Q ss_pred hh
Q psy10449 82 LY 83 (114)
Q Consensus 82 ~Y 83 (114)
+.
T Consensus 159 l~ 160 (266)
T 2of3_A 159 LS 160 (266)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 21
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.92 E-value=55 Score=21.77 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHh
Q psy10449 31 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWK 77 (114)
Q Consensus 31 EtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWk 77 (114)
+++|.|..+...++..+ |....+..+.+-|-+|...||..=-+
T Consensus 118 d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~ 160 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAAD 160 (201)
T ss_dssp CSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56777777666666544 33445556666666776666654433
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=41.32 E-value=18 Score=29.27 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHHhhhHHhhchH------HHHHHHHhhhcccc--hhhhHHHHhhhhhhhccCCCceeecccCc
Q psy10449 32 TSPHLVQAFMDAVEGLRVALGPV------RILQYVLQGLFHPA--RKVRDVYWKIYNSLYIGGQDALISAYPRI 97 (114)
Q Consensus 32 tSphVi~av~~aie~lr~alGp~------~~l~Y~lqGLFHPA--RkVR~~YWkiYN~~Yi~~~DalVp~YP~~ 97 (114)
+.+.++...++++..+--++|.. .+++-+++.|-++. +.||+...+....+--...+.+.||.|.+
T Consensus 651 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~ 724 (861)
T 2bpt_A 651 VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDI 724 (861)
T ss_dssp TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56778888888888887777753 45666778887875 88999998888877766677788877654
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=36.86 E-value=12 Score=27.60 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=41.2
Q ss_pred eeeeecccCch-H----HHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchH----HHHHHHHhhhc
Q psy10449 5 IVSGVYGFGCE-D----ALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV----RILQYVLQGLF 65 (114)
Q Consensus 5 laLg~~GlG~E-D----a~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~----~~l~Y~lqGLF 65 (114)
.+||..+-||. + .+-.++..+.+-+-++.|.|+.+...++..+--.+|+. ..+.=++++|+
T Consensus 388 ~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 35666666765 2 23345556666666789999999999999998888873 23444555544
No 24
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=36.54 E-value=30 Score=30.25 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=51.3
Q ss_pred ccccHHHHHHHHHHHhhhHHhhch-------------HHHHHHHHhhh--cccchhhhHHHHhhhhhhhccCCCceeecc
Q psy10449 30 FETSPHLVQAFMDAVEGLRVALGP-------------VRILQYVLQGL--FHPARKVRDVYWKIYNSLYIGGQDALISAY 94 (114)
Q Consensus 30 fEtSphVi~av~~aie~lr~alGp-------------~~~l~Y~lqGL--FHPARkVR~~YWkiYN~~Yi~~~DalVp~Y 94 (114)
-+.+++|.+..++++..+--++|+ ..++.-+++.| ..+...||+.-=+....+--...+.+.+++
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 457788888788888888878887 36777778888 778889998776777766655666777777
Q ss_pred cCc
Q psy10449 95 PRI 97 (114)
Q Consensus 95 P~~ 97 (114)
|.+
T Consensus 609 ~~~ 611 (1230)
T 1u6g_C 609 PNT 611 (1230)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 25
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=36.30 E-value=55 Score=28.58 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchH------------HHHHHHHhhhc-ccchhhhHHHHhhhhhh
Q psy10449 16 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV------------RILQYVLQGLF-HPARKVRDVYWKIYNSL 82 (114)
Q Consensus 16 Da~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~------------~~l~Y~lqGLF-HPARkVR~~YWkiYN~~ 82 (114)
+.+-.++..++..+-++++.|+.+...++..+--.+|+. .++..+++++- ++.-++|+.==++...+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 455677788888888888888888888888888778764 45666677776 57777877655555554
Q ss_pred hccCCCceeecccC
Q psy10449 83 YIGGQDALISAYPR 96 (114)
Q Consensus 83 Yi~~~DalVp~YP~ 96 (114)
--...+.+.|+.|.
T Consensus 162 ~~~~~~~l~~~~~~ 175 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPS 175 (1230)
T ss_dssp HHHTCSSCTTTHHH
T ss_pred HHHhHhHHHHHHHH
Confidence 33334456665543
No 26
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.41 E-value=79 Score=21.15 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHH
Q psy10449 31 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYW 76 (114)
Q Consensus 31 EtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YW 76 (114)
+++|.|..+...++-.+ |....+..+.+.|-+|...||..=-
T Consensus 123 d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~ 164 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAA 164 (211)
T ss_dssp CSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56666666655555443 4444555566666666666665433
No 27
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=35.21 E-value=86 Score=19.90 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHH
Q psy10449 31 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDV 74 (114)
Q Consensus 31 EtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~ 74 (114)
+++|.|+.+...++..+ |....+.-+...|-+|...||..
T Consensus 53 d~~~~vR~~A~~aL~~~----~~~~a~~~L~~~L~d~~~~VR~~ 92 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNF----QDERAVEPLIKLLEDDSGFVRSG 92 (131)
T ss_dssp CSCHHHHHHHHHHHGGG----CSHHHHHHHHHHHHHCCTHHHHH
T ss_pred CCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHcCCCHHHHHH
Confidence 56677776666665543 23344556666666777777653
No 28
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=32.58 E-value=94 Score=22.43 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=48.3
Q ss_pred HHHHHHhhcccccc-----ccHHHHHHHHHHHhhhHHhhc-hHHHHHHHHhhhcccchhhhHHHHhhhhhhh
Q psy10449 18 LTHLLNYVWPNIFE-----TSPHLVQAFMDAVEGLRVALG-PVRILQYVLQGLFHPARKVRDVYWKIYNSLY 83 (114)
Q Consensus 18 ~iHlLN~vwPNIfE-----tSphVi~av~~aie~lr~alG-p~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Y 83 (114)
+......++|.++| +-+.+.++.++++..+.-..+ +..++..+..|+=|..-|||..=......+.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 34455667777765 447788877777766654444 4688999999999999999998777666554
No 29
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=31.50 E-value=41 Score=30.50 Aligned_cols=67 Identities=10% Similarity=0.188 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHhhhHHhhc--h---HHHHHHHHhhhcc------------cchhhhHHHHhhhhhhhccCCCceeecc
Q psy10449 32 TSPHLVQAFMDAVEGLRVALG--P---VRILQYVLQGLFH------------PARKVRDVYWKIYNSLYIGGQDALISAY 94 (114)
Q Consensus 32 tSphVi~av~~aie~lr~alG--p---~~~l~Y~lqGLFH------------PARkVR~~YWkiYN~~Yi~~~DalVp~Y 94 (114)
+.|.++++.+..++++-.-+. | ..+|+|++.++-+ -.|+||..=--..+.+=-.++|.|+|+|
T Consensus 544 ~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~ 623 (1204)
T 3a6p_A 544 KDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNF 623 (1204)
T ss_dssp SCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 588999999999987765554 3 2688999999865 2467888777777777777889999999
Q ss_pred cCcc
Q psy10449 95 PRIQ 98 (114)
Q Consensus 95 P~~~ 98 (114)
+.+.
T Consensus 624 ~~i~ 627 (1204)
T 3a6p_A 624 DMLY 627 (1204)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9765
No 30
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.75 E-value=1.6e+02 Score=19.61 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=40.6
Q ss_pred ccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhhhccCCCceeecccCcc
Q psy10449 30 FETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQ 98 (114)
Q Consensus 30 fEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~~DalVp~YP~~~ 98 (114)
-+++|.|..+.+.++..+ |....+..+.+.|-+|...||..=-+..-. ++..+++-+.-..++
T Consensus 91 ~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~--~~~~~~~~~L~~~l~ 153 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGE--IGDERAVEPLIKALK 153 (211)
T ss_dssp TCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHH--HCCGGGHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHc
Confidence 467888888877777654 444567888888899999998655444333 255544433333443
No 31
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=22.65 E-value=24 Score=27.69 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=19.4
Q ss_pred eeeecccCchHHHHHHH-----------Hhhccccccc
Q psy10449 6 VSGVYGFGCEDALTHLL-----------NYVWPNIFET 32 (114)
Q Consensus 6 aLg~~GlG~EDa~iHlL-----------N~vwPNIfEt 32 (114)
+||-+|.-|=+-|+|=+ |++|| |.-
T Consensus 174 ~lgk~giiciEDLiheI~~~g~~fk~~~~fl~P--FkL 209 (244)
T 3iz5_e 174 GLGKHNIICIEDLVHEILTVGPHFKEANNFLWP--FKL 209 (244)
T ss_dssp SCCSSSCCCHHHHHHHHHHTCTTCSSSCCCSSC--EEC
T ss_pred hccccCcccHHHHHHHHHhCccCHHHhhcccCC--eeC
Confidence 46778888888899977 78888 553
No 32
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=22.10 E-value=29 Score=25.80 Aligned_cols=11 Identities=9% Similarity=0.613 Sum_probs=9.3
Q ss_pred HHHHhhhhhhh
Q psy10449 73 DVYWKIYNSLY 83 (114)
Q Consensus 73 ~~YWkiYN~~Y 83 (114)
|-||++||++=
T Consensus 43 E~FW~~yn~i~ 53 (189)
T 3hxi_A 43 EDFWSVLTHTV 53 (189)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 67999999873
No 33
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=20.63 E-value=33 Score=25.04 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=9.6
Q ss_pred HHHHhhhhhhhc
Q psy10449 73 DVYWKIYNSLYI 84 (114)
Q Consensus 73 ~~YWkiYN~~Yi 84 (114)
|-||++||++=-
T Consensus 38 E~FW~~yn~i~~ 49 (177)
T 2idr_A 38 EDFWGLYNNIHN 49 (177)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHhcCCC
Confidence 679999998743
No 34
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=20.02 E-value=34 Score=25.21 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=9.2
Q ss_pred HHHHhhhhhhh
Q psy10449 73 DVYWKIYNSLY 83 (114)
Q Consensus 73 ~~YWkiYN~~Y 83 (114)
|-||++||++=
T Consensus 43 E~FW~~yn~i~ 53 (190)
T 1l8b_A 43 EDFWALYNHIQ 53 (190)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHcCC
Confidence 67999999873
Done!