RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10449
         (114 letters)



>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM
           biosynthesis, lyase; 1.84A {Homo sapiens} SCOP:
           c.113.1.1
          Length = 286

 Score = 32.0 bits (73), Expect = 0.021
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 15  EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 64
            + L+H  +Y    IF TSP  V+A    +E         R L+      
Sbjct: 68  SEKLSHPEDYGGL-IF-TSPRAVEAAELCLEQNNKTEVWERSLKEKWNAK 115


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.079
 Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 25/82 (30%)

Query: 28  NIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVY--------WKIY 79
           ++++T   LV   +                   L  L         V+        W + 
Sbjct: 175 DLYQTYHVLVGDLIKFSAET-------------LSELIRTTLDAEKVFTQGLNILEW-LE 220

Query: 80  NSLYIGGQDALISA---YPRIQ 98
           N      +D L+S     P I 
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIG 242



 Score = 28.5 bits (63), Expect = 0.54
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 19/92 (20%)

Query: 25  VWPNIFETSPHLVQAFMDAVEG-----LRVA-LGPVRILQYVLQGLFH-PARKVRDVYWK 77
            +PN     P +++  ++  EG     L ++ L   ++  YV +   H PA K      +
Sbjct: 313 AYPNT-SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK------Q 365

Query: 78  IYNSLYIGGQDALISAYPRIQNDMK--NVYLR 107
           +  SL  G ++ ++S  P+    +   N+ LR
Sbjct: 366 VEISLVNGAKNLVVSGPPQ---SLYGLNLTLR 394


>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich,
           DNA-binding, transcription regulation; HET: MES; 1.83A
           {Citrobacter freundii} PDB: 3kot_A
          Length = 219

 Score = 27.2 bits (61), Expect = 1.1
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 29  IFETSPHLVQAFMDAVEGLRVALGP 53
           +F++S  +++A   A  G+ VA+ P
Sbjct: 135 VFDSSVTMLEA---AQAGMGVAIAP 156


>2qsx_A Putative transcriptional regulator, LYSR family; the putative
           transcriptional regulator, PSI-2, structure initiative,
           MCSG; 1.64A {Vibrio parahaemolyticus}
          Length = 218

 Score = 26.4 bits (59), Expect = 1.8
 Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 3/24 (12%)

Query: 30  FETSPHLVQAFMDAVEGLRVALGP 53
           FE      +A         +AL P
Sbjct: 142 FEHFYLACEA---VRMEKGLALLP 162


>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family,
          uroporphyrinogen III synthase, HMB, lyase; 2.50A
          {Pseudomonas syringae PV}
          Length = 269

 Score = 26.2 bits (58), Expect = 2.9
 Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query: 15 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 56
             +  LLNY    +   S    +  ++ ++ +         
Sbjct: 58 RSIIFELLNYSA--VIVVSKPAARLAIELIDEVWPQPPMQPW 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.145    0.460 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,794,461
Number of extensions: 94297
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 12
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)