RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10449
         (114 letters)



>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 11/73 (15%)

Query: 29  IFETSPHLVQAFMDAVEG----LRVALGPVRIL------QYVLQGLFHPARKVRDVYWKI 78
           +  T+   V+  ++A +     L   L     L         L+    P   V D   K 
Sbjct: 57  LA-TTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKS 115

Query: 79  YNSLYIGGQDALI 91
              L   G+    
Sbjct: 116 LLPLLPQGRGVAA 128


>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
           (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
           63363]}
          Length = 247

 Score = 23.3 bits (50), Expect = 9.3
 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 15  EDALTHLLNYVWP-NIFE 31
           + A   LL+Y W  N+ E
Sbjct: 204 KSAQELLLSYPWYGNVRE 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.145    0.460 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,459
Number of extensions: 18174
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 3
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)