BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1045
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V5M|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Aps
Length = 136
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 7/99 (7%)
Query: 20 SKHKTNKLAKI-VVECRKEGIVNYLVGENT----DGTQKWEKCRLALVKTVGG--YMLEF 72
S N AK+ +V+ ++EG + ++V ++ GT +W+KCRL L + V G + LEF
Sbjct: 3 SGSSGNLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEF 62
Query: 73 YSPPKSLKPKKGVFCFLITEARETSALEMPDHENTFVLK 111
+ PPK+ +PK + I E R T LEMP+ +NTFVLK
Sbjct: 63 FVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLK 101
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MAIAMALCGGIGRIKNRAESKHKTNKLAKI 30
MAIAMAL GGIG I + + + N++ K+
Sbjct: 78 MAIAMALTGGIGFIHHNCTPEFQANEVRKV 107
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MAIAMALCGGIGRIKNRAESKHKTNKLAKI 30
MAIAMAL GGIG I + + + N++ K+
Sbjct: 78 MAIAMALTGGIGFIHHNCTPEFQANEVRKV 107
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MAIAMALCGGIGRIKNRAESKHKTNKLAKI 30
MAIAMAL GGIG I + + + N++ K+
Sbjct: 78 MAIAMALMGGIGFIHHNCTPEFQANEVRKV 107
>pdb|3JTW|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
1.90 A Resolution
pdb|3JTW|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
1.90 A Resolution
Length = 178
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 14 IKNRAESKHKTNKLA--KIVVECRKEGIVNYLVGENTDGTQKWEKCRLALVKTV 65
I R + T KL+ K V R+ IV +GE+TD + W++ + LVK +
Sbjct: 52 IXGRTTYEQVTQKLSPEKYVYADRQTYIVTSHLGEDTDKIKYWKQSPVELVKRI 105
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 5 MALCGGIGRIKNRAESKHKTNKLAKIVVECRKEGIV 40
+ LCG I + N+ + N L+ +V R EG+V
Sbjct: 244 IVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMV 279
>pdb|3J0C|A Chain A, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
pdb|3J0C|D Chain D, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
pdb|3J0C|G Chain G, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
pdb|3J0C|J Chain J, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
Length = 442
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 9 GGIGRIKNRAESKHKTNKLAKIVVECRKEGIVNYLVGENTDGTQKWEKCRLALVKTVGGY 68
G G I++R S +V++ K G ++ + G ++W+K + +K +
Sbjct: 198 GAFGDIQSRTVSSSDLYANTNLVLQRPKAGAIHVPYTQAPSGFEQWKKDKAPSLKFTAPF 257
Query: 69 MLEFYSPP 76
E Y+ P
Sbjct: 258 GCEIYTNP 265
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 1 MAIAMALCGGIGRIKNRAESKHKTNKLAKI 30
MA+ MA GGIG I + + + N++ K+
Sbjct: 58 MAVGMARLGGIGIIHKNMDMESQVNEVLKV 87
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 1 MAIAMALCGGIGRIKNRAESKHKTNKLAKI 30
MA+ MA GGIG I + + + N++ K+
Sbjct: 61 MAVGMARLGGIGIIHKNMDMESQVNEVLKV 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,284,729
Number of Sequences: 62578
Number of extensions: 115668
Number of successful extensions: 286
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 10
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)