RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1045
(113 letters)
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 111 bits (279), Expect = 3e-33
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 7/99 (7%)
Query: 20 SKHKTNKLAKI-VVECRKEGIVNYLVGENTD----GTQKWEKCRLALVKTVGG--YMLEF 72
S N AK+ +V+ ++EG + ++V ++ GT +W+KCRL L + V G + LEF
Sbjct: 3 SGSSGNLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEF 62
Query: 73 YSPPKSLKPKKGVFCFLITEARETSALEMPDHENTFVLK 111
+ PPK+ +PK + I E R T LEMP+ +NTFVLK
Sbjct: 63 FVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLK 101
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 1 MAIAMALCGGIGRI-KN 16
MAIAMAL GGIG I N
Sbjct: 78 MAIAMALMGGIGFIHHN 94
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus
pyogenes} SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 32.1 bits (74), Expect = 0.028
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 1 MAIAMALCGGIGRI-KN 16
MAIA+A GG+G I KN
Sbjct: 60 MAIAIARAGGLGVIHKN 76
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A
{Vibrio cholerae o1 biovar el tor}
Length = 496
Score = 32.1 bits (74), Expect = 0.028
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 1 MAIAMALCGGIGRI-KN 16
+AIA+A GGIG I KN
Sbjct: 59 LAIALAQEGGIGFIHKN 75
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
center for structural genomics of infec diseases,
csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A
{Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 31.7 bits (73), Expect = 0.029
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 1 MAIAMALCGGIGRI-KN 16
MAIAMA GG+G I KN
Sbjct: 83 MAIAMARQGGLGIIHKN 99
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G
joint center for structural genomics, JCSG, protein
structu initiative, PSI; 2.18A {Thermotoga maritima}
SCOP: c.1.5.1
Length = 494
Score = 31.7 bits (73), Expect = 0.030
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 1 MAIAMALCGGIGRI-KN 16
+A A+A GGIG I KN
Sbjct: 65 LAKALAREGGIGIIHKN 81
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 31.3 bits (72), Expect = 0.051
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 1 MAIAMALCGGIGRI-KN 16
MA+AMA GG+G I +N
Sbjct: 63 MAVAMAREGGLGVIHRN 79
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 31.0 bits (71), Expect = 0.066
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 1 MAIAMALCGGIGRI-KN 16
MAIA+A GGI I +
Sbjct: 67 MAIALAREGGISFIFGS 83
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 26.7 bits (59), Expect = 0.99
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 36 KEGIVNYLVGENTDGTQKWEKCRLALVKTVGGYMLEFYSPPKSLKPKKGVFCFLITEARE 95
KEG+++Y G + G + W+ C + L +L Y + P +
Sbjct: 2 KEGMLHYKAGTSYLGKEHWKTCFVVLS----NGILYQYPDRTDVIP-LLSVNMGGEQCGG 56
Query: 96 TSALEMPDHENTFVL 110
D + F +
Sbjct: 57 CRRANTTDRPHAFQV 71
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural
genomics, protein structure initiative; 2.80A {Bacillus
halodurans}
Length = 455
Score = 26.8 bits (60), Expect = 1.7
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 2 AIAMALCGGIGRIKNRAESKHK-TNKLAKIVVECRKEGI 39
A+ G IK+ E K K TN++ +V E K G
Sbjct: 324 AVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGA 362
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii}
PDB: 3roi_A* 4egr_A* 3tr1_A
Length = 441
Score = 26.7 bits (60), Expect = 1.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 2 AIAMALCGGIGRIKNRAESKHK-TNKLAKIVVECRKEGIVNYLVGENTDG 50
IA A+ G +++ AE + K T+++A +V +K GI DG
Sbjct: 324 LIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIA---AESLPDG 370
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 26.8 bits (60), Expect = 1.8
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 2 AIAMALCGGIGRIKNRAESKHK-TNKLAKIVVECRKEGIVNYLVGENTDG 50
A+ G+ IK+ E K K T+++ + G + DG
Sbjct: 318 ALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGAD---ITPTADG 364
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 2 AIAMALCGGIGRIKNRAESKHK-TNKLAKIVVECRKEGI 39
A+A A G + E + K +++L+ + + G+
Sbjct: 327 AVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGV 365
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY
crystallography, putative translation factor, PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: d.115.1.1 PDB: 1kk9_A
Length = 206
Score = 25.5 bits (57), Expect = 3.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 79 LKPKKGVFCFLITEARETSALEMPDHE 105
LK K V L+ E R+T + +P +
Sbjct: 101 LKGTKEVPRRLLQEKRKTIGMRVPSNP 127
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 25.7 bits (56), Expect = 4.1
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 27 LAKIVVECRKEGIVNYLVGENTDGTQKWEKCRLALVKTVGGYMLEFYSPPKSLKPKKGVF 86
L R G + YL G+ G +++ K + + GY ++ +
Sbjct: 122 LVAAARALRMGGRL-YLAGDKNKGFERYFK----EARALLGYG-------VVVRREGPYR 169
Query: 87 CFLITEARETSALEMPDHENTFVLKGR 113
L+ + +E L + + G
Sbjct: 170 VALLEKEKEAPPLPSLWRAFSARILGA 196
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical
protein from thermus therm HB8, MAD; 1.70A {Thermus
thermophilus} SCOP: d.58.50.1
Length = 102
Score = 24.4 bits (53), Expect = 6.4
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 65 VGGYMLEFYSPPKSLKPKKGVFCFLITEARET---SALEMPDHEN 106
+G Y +P +SLK K+ + + + SA + +
Sbjct: 5 LGLYTARLETPARSLKEKRALIKPALERLKARFPVSAARLYGLDA 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,667,720
Number of extensions: 85161
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 22
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)