RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1045
         (113 letters)



>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein
           APS {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 136

 Score = 62.9 bits (152), Expect = 2e-14
 Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 7/99 (7%)

Query: 20  SKHKTNKLAKI-VVECRKEGIVNYLVGENTD----GTQKWEKCRLALVKTVGG--YMLEF 72
           S    N  AK+ +V+ ++EG + ++V ++      GT +W+KCRL L + V G  + LEF
Sbjct: 3   SGSSGNLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEF 62

Query: 73  YSPPKSLKPKKGVFCFLITEARETSALEMPDHENTFVLK 111
           + PPK+ +PK  +    I E R T  LEMP+ +NTFVLK
Sbjct: 63  FVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLK 101


>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
           dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
           1314]}
          Length = 365

 Score = 28.1 bits (62), Expect = 0.20
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1   MAIAMALCGGIGRIKNRAESKHKTNKLAKIVVECRKEGIVNYLVGENTDGTQKWEKCRLA 60
           MAIA+A  GG+G I ++  S  +  +  + V       +V   VG  +D  ++ E    A
Sbjct: 60  MAIAIARAGGLGVI-HKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEA 118

Query: 61  LVK 63
              
Sbjct: 119 GAD 121


>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
          {Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
          139]}
          Length = 388

 Score = 26.6 bits (58), Expect = 0.64
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 1  MAIAMALCGGIGRIKNRAESKHKTNKLAKIVVECRKEGIVNYLVGENTDG 50
          MAIA+A  GGIG I       HK   +     E  K     +    NT+G
Sbjct: 56 MAIAIAKEGGIGII-------HKNMSIEAQRKEIEKVKTYKFQKTINTNG 98


>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
           dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
           griseus) [TaxId: 10029]}
          Length = 378

 Score = 25.1 bits (54), Expect = 2.4
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 17/117 (14%)

Query: 1   MAIAMALCGGIG------RIKNRAESKHKTNKLAKIVVEC---RKEGIVNYLVGENTDGT 51
           MAIAMAL GGIG        + +A    K  K  +  +     +K+ +    +G + D  
Sbjct: 62  MAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDK 121

Query: 52  QKWEKCRLALVKTVGGY--------MLEFYSPPKSLKPKKGVFCFLITEARETSALE 100
            + +   LA V  V            +      K   P   V    +  A +   L 
Sbjct: 122 YRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLI 178


>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
           dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
           5724]}
          Length = 362

 Score = 24.4 bits (52), Expect = 4.3
 Identities = 14/91 (15%), Positives = 22/91 (24%)

Query: 1   MAIAMALCGGIGRIKNRAESKHKTNKLAKIVVECRKEGIVNYLVGENTDGTQKWEKCRLA 60
           MAIA+A  GGI  I      + +   +  +       G                E     
Sbjct: 66  MAIALAREGGISFIFGSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADV 125

Query: 61  LVKTVGGYMLEFYSPPKSLKPKKGVFCFLIT 91
           L         E+         +K      + 
Sbjct: 126 LCIDSSDGFSEWQKITIGWIREKYGDKVKVG 156


>d2it9a1 d.18.1.3 (A:1-122) Hypothetical protein PMN2A_0962
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 122

 Score = 23.5 bits (51), Expect = 4.9
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 81  PKKGVFCFLITEARETSALEMPDHE 105
             +  F  LI    ET A+E+   E
Sbjct: 15  SSRDNFSTLI--GGETWAIELDKSE 37


>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus
           thermophilus [TaxId: 274]}
          Length = 98

 Score = 23.5 bits (51), Expect = 5.0
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 65  VGGYMLEFYSPPKSLKPKKGVFCFLITEARET---SALEMPDHEN 106
           +G Y     +P +SLK K+ +    +   +     SA  +   + 
Sbjct: 5   LGLYTARLETPARSLKEKRALIKPALERLKARFPVSAARLYGLDA 49


>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c
           {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 121

 Score = 23.5 bits (51), Expect = 5.9
 Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 2/25 (8%)

Query: 81  PKKGVFCFLITEARETSALEMPDHE 105
                +  L+       A+E+   E
Sbjct: 17  ETAHRYPGLV--GTTDWAVELTAAE 39


>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 268

 Score = 23.7 bits (51), Expect = 6.8
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 5  MALCGGIGRIK-----NRAESKHKTNKLAKIVVECRKEG-IVNYLVGENT 48
          +AL  G             ES  KT     IV + +K G    ++  E+ 
Sbjct: 47 LALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,130
Number of extensions: 16061
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 12
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)