BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10450
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 29 PLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILE 68
P +VET+GD YM VSGLPE +HAR I +AL ++E
Sbjct: 60 PFVYKVETVGDKYMTVSGLPEP-CIHHARSICHLALDMME 98
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 29 PLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILE 68
P +VET+ D YM VSGLPE +HAR I +AL ++E
Sbjct: 61 PFVYKVETVCDKYMTVSGLPEP-CIHHARSICHLALDMME 99
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 33 QVETIGDAYMVVSGLPERNGDNHAREISRMALAILE 68
+VETIGDAY V GL + D HA +I+ MAL ++E
Sbjct: 59 KVETIGDAYCVAGGL-HKESDTHAVQIALMALKMME 93
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 QVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAV 70
+++ +GD Y VSGLPE D HA M + ++EA+
Sbjct: 71 RIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAI 107
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 QVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAV 70
+++ +GD Y VSGLPE D HA M + ++EA+
Sbjct: 79 RIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAI 115
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 QVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAV 70
+++ +GD Y VSGLPE D HA M + ++EA+
Sbjct: 79 RIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAI 115
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 18 FKFLTLKVSPFPLPSQVETIGDAYMVVSGLPE--RNGDNH-AREISRMALAILEAVQSFS 74
F+ TL ++ LP VE D Y V +P R + H AREI R+A A + +V +F
Sbjct: 20 FEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFG 79
Query: 75 IQHKPD 80
I H D
Sbjct: 80 ISHHTD 85
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 18 FKFLTLKVSPFPLPSQVETIGDAYMVVSGLPE--RNGDNH-AREISRMALAILEAVQSFS 74
F+ TL ++ LP VE D Y V +P R + H AREI R+A A + +V +F
Sbjct: 20 FEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFG 79
Query: 75 IQHKPD 80
I H D
Sbjct: 80 ISHHTD 85
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 18 FKFLTLKVSPFPLPSQVETIGDAYMVVSGLPE--RNGDNH-AREISRMALAILEAVQSFS 74
F+ TL ++ LP VE D Y V +P R + H AREI R+A A + +V +F
Sbjct: 20 FEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFG 79
Query: 75 IQHKPD 80
I H D
Sbjct: 80 ISHHTD 85
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 12 DKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQ 71
D++++ F + +P +VETIGDAYMVV + D+HA + AL + E
Sbjct: 37 DELYQRFD---AAIEEYPQLYKVETIGDAYMVVCNVTV-PCDDHADVLLEFALRMHEEAS 92
Query: 72 SFSIQHKPDAQLKSGM 87
+ +++ GM
Sbjct: 93 RVASSLGEPVRIRVGM 108
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 12 DKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQ 71
D++++ F + +P +VETIGDAYMVV + D+HA + AL + E
Sbjct: 37 DELYQRFD---AAIEEYPQLYKVETIGDAYMVVCNVTV-PCDDHADVLLEFALRMHEEAS 92
Query: 72 SFSIQHKPDAQLKSGM 87
+ +++ GM
Sbjct: 93 RVASSLGEPVRIRVGM 108
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 33 QVETIGDAYMVVSGLPERNGDNHAREISRMAL 64
++E GD+YMVVSG+P R +H + ++ AL
Sbjct: 55 KIEVSGDSYMVVSGVP-RPRPDHTQALADFAL 85
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 28 FPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQ-SFSIQHKPDAQLKSG 86
F +++TIG YM +GL HA+E R + I V+ ++++ K DA K
Sbjct: 62 FSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHS 121
Query: 87 MIEF 90
+F
Sbjct: 122 FNDF 125
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 28 FPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQ-SFSIQHKPDAQLKSG 86
F +++TIG YM +GL HA+E R + I V+ ++++ K DA K
Sbjct: 58 FSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHS 117
Query: 87 MIEF 90
+F
Sbjct: 118 FNDF 121
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 28 FPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQ-SFSIQHKPDAQLKSG 86
F +++TIG YM +GL HA+E R + I V+ ++++ K DA K
Sbjct: 61 FSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHS 120
Query: 87 MIEF 90
+F
Sbjct: 121 FNDF 124
>pdb|3F1Y|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter
Xylanophilus
pdb|3F1Y|C Chain C, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter
Xylanophilus
pdb|3KIA|A Chain A, Crystal Structure Of Mannosyl-3-Phosphoglycerate Synthase
From Rubrobacter Xylanophilus
pdb|3KIA|C Chain C, Crystal Structure Of Mannosyl-3-Phosphoglycerate Synthase
From Rubrobacter Xylanophilus
pdb|3O3P|A Chain A, Crystal Structure Of R. Xylanophilus Mpgs In Complex With
Gdp-Mannose
pdb|3O3P|B Chain B, Crystal Structure Of R. Xylanophilus Mpgs In Complex With
Gdp-Mannose
Length = 387
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 13 KVFKSFKFLT-LKVSPFPLPSQVETIGDAYMVVSGLPER-NGDNHAREISRMALAILEAV 70
++F S FLT V + ++ +G M L ER N H R++SRM+ A++ AV
Sbjct: 268 ELFCSIPFLTGYAVETGIMIDVLKKVGLGAMAQVDLGERQNRHQHLRDLSRMSYAVVRAV 327
>pdb|3VGI|A Chain A, The Crystal Structure Of Hyperthermophilic Family 12
Endocellulase From Pyrococcus Furiosus
Length = 319
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 27 PFPLPSQVETIGDAYMVVS-GLPERNG 52
P PLPS+V + D Y+ +S L +NG
Sbjct: 144 PIPLPSKVSNLTDFYLTISYKLEPKNG 170
>pdb|3NVN|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|F Chain F, Molecular Mechanism Of Guidance Cue Recognition
Length = 476
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 53 DNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMIEFPHHP 94
D R ++ L L+ + H DA L +G I FP++P
Sbjct: 175 DTEGRSLATQELGRLKLCEGAGSLHFVDAFLWNGSIYFPYYP 216
>pdb|1WUB|A Chain A, Crystal Structure Of The Polyisoprenoid-Binding Protein,
Tt1927b, From Thermus Thermophilus Hb8
Length = 178
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 31 PSQVETIGDAYMVVSGLPERNG 52
P QVE + DA + +G P+R+G
Sbjct: 43 PIQVEAVIDAASIATGEPQRDG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,102,633
Number of Sequences: 62578
Number of extensions: 103376
Number of successful extensions: 252
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 19
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)