Query psy10450
Match_columns 111
No_of_seqs 102 out of 1087
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 18:30:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ab8_A Adenylyl cyclase; lyase 99.9 4.3E-26 1.5E-30 164.6 11.4 99 9-110 43-152 (220)
2 3uvj_A Guanylate cyclase solub 99.9 4.4E-26 1.5E-30 165.0 10.8 96 9-110 39-134 (225)
3 1azs_A VC1; complex (lyase/hyd 99.9 1.4E-25 4.6E-30 162.7 11.9 96 9-110 59-154 (220)
4 3et6_A Soluble guanylyl cyclas 99.9 1.7E-25 5.9E-30 157.3 10.7 97 9-110 34-130 (190)
5 2w01_A Adenylate cyclase; guan 99.9 2E-24 6.8E-29 154.3 12.9 97 9-110 39-139 (208)
6 2wz1_A Guanylate cyclase solub 99.9 4.4E-25 1.5E-29 159.4 9.0 95 9-110 41-138 (219)
7 1yk9_A Adenylate cyclase; beta 99.9 1.3E-25 4.5E-30 160.4 4.4 96 9-110 35-130 (204)
8 3r5g_A CYAB; adenylyl cyclase, 99.9 9.6E-24 3.3E-28 149.0 11.4 98 9-110 34-137 (198)
9 1wc3_A Adenylate cyclase; solu 99.9 1.3E-23 4.3E-28 151.6 10.8 98 9-110 52-160 (219)
10 1fx2_A Receptor-type adenylate 99.8 1.4E-19 5E-24 130.7 11.6 88 9-110 36-159 (235)
11 1ybt_A Hydrolase, alpha/beta h 99.8 2.9E-19 9.9E-24 125.7 8.6 80 9-110 42-121 (184)
12 3mr7_A Adenylate/guanylate cyc 99.8 3.5E-18 1.2E-22 120.0 9.3 82 9-110 31-115 (189)
13 1y10_A Hypothetical protein RV 99.7 1.1E-17 3.8E-22 130.8 7.9 77 9-110 240-316 (407)
14 1ylx_A Hypothetical protein AP 46.5 19 0.00064 22.5 3.0 23 4-26 6-28 (103)
15 1fit_A FragIle histidine prote 36.9 64 0.0022 20.5 4.7 33 59-92 55-87 (147)
16 3tek_A Thermodbp-single strand 36.3 28 0.00095 22.8 2.7 31 9-47 87-122 (148)
17 3pie_A 5'->3' exoribonuclease 35.1 1.2E+02 0.0043 26.6 7.3 34 8-50 58-92 (1155)
18 1cqm_A Ribosomal protein S6; a 30.7 89 0.0031 18.9 4.4 35 7-43 15-49 (101)
19 3ung_C CMR2DHD; ferredoxin fol 29.1 2.5E+02 0.0085 23.3 8.1 66 10-89 470-538 (693)
20 1bby_A RAP30; average structur 28.9 26 0.0009 20.3 1.5 14 7-20 6-19 (69)
21 4g9p_A 4-hydroxy-3-methylbut-2 28.0 42 0.0014 26.0 3.0 13 80-92 137-149 (406)
22 3ksv_A Uncharacterized protein 28.0 1.2E+02 0.004 19.5 4.9 71 17-92 14-99 (149)
23 3noy_A 4-hydroxy-3-methylbut-2 27.3 48 0.0016 25.4 3.1 13 80-92 133-145 (366)
24 2e12_A SM-like motif, hypothet 27.3 1.1E+02 0.0038 18.7 4.4 29 71-99 19-47 (101)
25 3o0m_A HIT family protein; ssg 26.7 1.2E+02 0.0042 19.2 4.8 34 59-92 61-94 (149)
26 2y35_A LD22664P; hydrolase-DNA 24.8 97 0.0033 27.2 4.9 31 8-47 58-88 (1140)
27 3o1c_A Histidine triad nucleot 24.0 74 0.0025 19.7 3.2 11 82-92 93-103 (126)
28 2eo4_A 150AA long hypothetical 23.3 1.3E+02 0.0044 19.0 4.4 33 60-93 56-88 (149)
29 3ano_A AP-4-A phosphorylase; d 23.0 1.2E+02 0.0042 21.0 4.5 12 82-93 148-159 (218)
30 1oks_A RNA polymerase alpha su 21.2 88 0.003 17.2 2.6 17 9-25 35-51 (56)
31 2lfh_A DNA-binding protein inh 20.9 15 0.00053 21.4 -0.6 19 4-22 22-40 (68)
32 2p06_A Hypothetical protein AF 20.4 59 0.002 19.8 2.0 18 7-24 58-75 (114)
33 3oj7_A Putative histidine tria 20.3 87 0.003 19.0 2.9 12 82-93 84-95 (117)
34 2kjw_A TS9, 30S ribosomal prot 20.3 96 0.0033 18.9 3.0 31 7-39 57-87 (96)
No 1
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=99.93 E-value=4.3e-26 Score=164.60 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCC-----------CCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPER-----------NGDNHAREISRMALAILEAVQSFSIQH 77 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~-----------~~~~~a~~~~~~Al~m~~~~~~~~~~~ 77 (111)
+.||++|+.||+++.+|. +.+++++|++||+|||+||+|.. ..+ |+.+++++|++|++.++.++...
T Consensus 43 ~~Ln~~~~~~~~~i~~~~-~~g~~~ik~iGD~~ma~fg~p~~~~~~~~~~~~~~~~-~a~~a~~~Al~~~~~l~~~~~~~ 120 (220)
T 1ab8_A 43 RLLNEIIADFDDLLSKPK-FSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYM-HIGTMVEFAYALVGKLDAINKHS 120 (220)
T ss_dssp HHHHHHHHHHHGGGGSGG-GTTEEEEEEETTEEEEEECCCCSCCC--------CCH-HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhc-cCCeEEEEEeCceEEEEECCCccccccccccccccHH-HHHHHHHHHHHHHHHHHHHhhcc
Confidence 679999999999999871 12599999999999999999872 344 99999999999999999999877
Q ss_pred CCCceeEEEEecccEeEEeecCCCccceecccC
Q psy10450 78 KPDAQLKSGMIEFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 78 ~~~l~lRIGIhtGpvv~GvIG~~~~l~~~~i~~ 110 (111)
.+++++|||||+|||++|++|++ +..|++||+
T Consensus 121 ~~~l~~rIGIh~G~v~~G~iG~~-r~~y~v~Gd 152 (220)
T 1ab8_A 121 FNDFKLRVGINHGPVIAGVIGAQ-KPQYDIWGN 152 (220)
T ss_dssp TCCCCCEEEEEEEEEEEEEECSS-SCEEEEESH
T ss_pred CCceEEEEEEEeeeEEEEeecCC-ceeEEEECc
Confidence 78899999999999999999998 689999996
No 2
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=99.93 E-value=4.4e-26 Score=165.04 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEe
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMI 88 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~~~~l~lRIGIh 88 (111)
+.||++|+.|++++.+| +.+++|++||+|||+||+|.+..+ |+.+++++|++|++.++.++.+...++++|||||
T Consensus 39 ~~ln~~~~~~~~~i~~~----~g~v~k~~GD~~ma~fg~p~~~~~-~a~~a~~~al~~~~~~~~~~~~~~~~l~~riGih 113 (225)
T 3uvj_A 39 TMLNALYTRFDQQCGEL----DVYKVETIGDAYCVAGGLHKESDT-HAVQIALMALKMMELSDEVMSPHGEPIKMRIGLH 113 (225)
T ss_dssp HHHHHHHHHHHHHHHHH----TCEEECCSTTCEEEEESSSSCCTT-HHHHHHHHHHHHHHHHTTSBCTTSCBCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhc----CeEEEEeeCcEEEEEECCCCCchH-HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 67899999999999999 599999999999999999999888 9999999999999999999887788899999999
Q ss_pred cccEeEEeecCCCccceecccC
Q psy10450 89 EFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 89 tGpvv~GvIG~~~~l~~~~i~~ 110 (111)
+|||++|+||++++ +|+++|+
T Consensus 114 ~G~v~~G~iG~~~~-~~~~~Gd 134 (225)
T 3uvj_A 114 SGSVFAGVVGVKMP-RYCLFGN 134 (225)
T ss_dssp EEEEEEEEECC-CC-EEEEESH
T ss_pred eccEEEEEecCCCc-eEEEECc
Confidence 99999999999887 9999986
No 3
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=99.93 E-value=1.4e-25 Score=162.71 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEe
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMI 88 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~~~~l~lRIGIh 88 (111)
+.||++|+.|++++.+| +.+++|++||+|||+||+|.+..+ |+.+++++|++|++.++.++...+.++++|||||
T Consensus 59 ~~Ln~~~~~~~~~i~~~----gG~v~k~iGD~~ma~fg~p~~~~~-~a~~Av~~Al~m~~~l~~~~~~~~~~l~irIGI~ 133 (220)
T 1azs_A 59 MTLNELFARFDKLAAEN----HCLRIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIH 133 (220)
T ss_dssp HHHHHHHHHHHHHHHHH----TEEEEEEETTEEEEEESCSSCCST-HHHHHHHHHHHHHHHHHHHHHHHCSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHc----CcEEEEEeCCeEEEEECCCCCChH-HHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE
Confidence 68999999999999999 489999999999999999998888 9999999999999999998876677899999999
Q ss_pred cccEeEEeecCCCccceecccC
Q psy10450 89 EFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 89 tGpvv~GvIG~~~~l~~~~i~~ 110 (111)
+|||++|++|+++ ..|++||+
T Consensus 134 tG~v~~G~vG~~~-~~y~v~Gd 154 (220)
T 1azs_A 134 SGRVHCGVLGLRK-WQFDVWSN 154 (220)
T ss_dssp EEEEEEEECSSSS-CCCEEESH
T ss_pred EeEEEEEEeCCCC-cEEEEEch
Confidence 9999999999996 78999986
No 4
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=99.93 E-value=1.7e-25 Score=157.27 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEe
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMI 88 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~~~~l~lRIGIh 88 (111)
+.||++|+.|++++.+|+ +++++|++||+|||+||+|....+ |+.+++++|++|++.++.++.....++++|||||
T Consensus 34 ~~l~~~~~~~~~~i~~~~---g~~~vk~~GD~~~a~fg~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~l~~riGi~ 109 (190)
T 3et6_A 34 SLLDELYQRFDAAIEEYP---QLYKVETIGDAYMVVCNVTVPCDD-HADVLLEFALRMHEEASRVASSLGEPVRIRVGMH 109 (190)
T ss_dssp HHHHHHHHHHHHHGGGCT---TEEEEECTTSCEEEEESSSSCCST-HHHHHHHHHHHHHHHHHTSCCC---CCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcC---CEEEEEEeCCEEEEEECCCCCchh-HHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEE
Confidence 788999999999999994 589999999999999999999888 9999999999999999998877778899999999
Q ss_pred cccEeEEeecCCCccceecccC
Q psy10450 89 EFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 89 tGpvv~GvIG~~~~l~~~~i~~ 110 (111)
+|||++|++|+.++ +|+++|+
T Consensus 110 ~G~v~~g~vG~~~~-~~~v~G~ 130 (190)
T 3et6_A 110 SGPVVAGVVGRKMP-RFXLFGD 130 (190)
T ss_dssp EEEEEEEEECSSSC-EEEEESH
T ss_pred eccEEEEecCCCcc-eEEecCc
Confidence 99999999999887 9999986
No 5
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=99.92 E-value=2e-24 Score=154.30 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhc----CCCCceeE
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQ----HKPDAQLK 84 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~----~~~~l~lR 84 (111)
+.||++|+.+++++.+|+ .+++|++||+|||+||.|....+ |+.+++++|++|++.++.++.. ..+++++|
T Consensus 39 ~~l~~~~~~~~~~i~~~~----G~v~k~~GD~~~a~fg~p~~~~~-~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~l~~r 113 (208)
T 2w01_A 39 KVLNIYFGKMADVITHHG----GTIDEFMGDGILVLFGAPTSQQD-DALRAVACGVEMQLALREVNQQVTGLGLQPLEMG 113 (208)
T ss_dssp HHHHHHHHHHHHHHHHTT----CEEEEEETTEEEEEESSSSCCTT-HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCE
T ss_pred HHHHHHHHHHHHHHHHcC----CEEEEEEcCEEEEEECCCCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 679999999999999994 88999999999999999998888 9999999999999999887642 34679999
Q ss_pred EEEecccEeEEeecCCCccceecccC
Q psy10450 85 SGMIEFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 85 IGIhtGpvv~GvIG~~~~l~~~~i~~ 110 (111)
||||+|+|++|++|++++++|+++|+
T Consensus 114 iGi~~G~v~~g~vG~~~r~~~~v~G~ 139 (208)
T 2w01_A 114 IGINTGEVVVGNIGSEKRTKYGVVGA 139 (208)
T ss_dssp EEEEEEEEEEEEEECSSCEEEEEESH
T ss_pred EEEEeeEEEEEEeCCCCeeEEEEECH
Confidence 99999999999999999999999986
No 6
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=99.92 E-value=4.4e-25 Score=159.41 Aligned_cols=95 Identities=27% Similarity=0.362 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHH---hhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCceeEE
Q psy10450 9 EDEDKVFKSFKFLTL---KVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKS 85 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~---~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~~~~l~lRI 85 (111)
+.||++|+.|++++. +| +++++|++||+|||+||+|.+..+ |+.+++++|++|++.++.++.. .+++++||
T Consensus 41 ~~Ln~~~~~~~~~i~~~~~~----~g~~~k~~GD~~ma~fg~p~~~~~-~a~~A~~~Al~~~~~~~~~~~~-~~~l~~rI 114 (219)
T 2wz1_A 41 NLLNDLYTRFDTLTDSRKNP----FVYKVETVGDKYMTVSGLPEPCIH-HARSICHLALDMMEIAGQVQVD-GESVQITI 114 (219)
T ss_dssp HHHHHHHHHHHHHHCTTTCT----TCEEECCCTTCEEEEESSSSCCTT-HHHHHHHHHHHHHHHHTTCEET-TEECCEEE
T ss_pred HHHHHHHHHHHHHHHhhccC----CEEEEeecCCEEEEEECCCCCChh-HHHHHHHHHHHHHHHHHHHhcc-CCceEEEE
Confidence 678999999999999 55 699999999999999999998888 9999999999999999988754 66799999
Q ss_pred EEecccEeEEeecCCCccceecccC
Q psy10450 86 GMIEFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 86 GIhtGpvv~GvIG~~~~l~~~~i~~ 110 (111)
|||+|||++|+||+.+ .+|++||+
T Consensus 115 Gi~~G~v~~G~iG~~~-~~~~v~Gd 138 (219)
T 2wz1_A 115 GIHTGEVVTGVIGQRM-PRYCLFGN 138 (219)
T ss_dssp EEEEEEEEEEEECSSS-CEEEEESH
T ss_pred EEEEEEEEEEEeCCCc-eEEEEECH
Confidence 9999999999999985 79999986
No 7
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.3e-25 Score=160.44 Aligned_cols=96 Identities=22% Similarity=0.343 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEe
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMI 88 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~~~~l~lRIGIh 88 (111)
+.||++|+.|++++.+| +.+++|++||+|||+||+|....+ |+.+++++|++|++.++.++.+...++++|||||
T Consensus 35 ~~ln~~~~~~~~~i~~~----gG~v~k~~GD~~ma~fg~p~~~~~-~a~~A~~~Al~~~~~~~~~~~~~~~~l~~rIGI~ 109 (204)
T 1yk9_A 35 RFLDRLYSAFDELVDQH----GLEKIEVSGDSYMVVSGVPRPRPD-HTQALADFALDMTNVAAQLKDPRGNPVPLRVGLA 109 (204)
T ss_dssp THHHHHHTTTTGGGTTS----SCEECCCSSSCEEEESCCSSCCTT-HHHHHHTHHHHHHHHTTTCCSSSCCCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHc----CCEEEEEeCCeEEEEECCCCCChH-HHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEE
Confidence 78999999999999999 489999999999999999998888 9999999999999999999887788899999999
Q ss_pred cccEeEEeecCCCccceecccC
Q psy10450 89 EFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 89 tGpvv~GvIG~~~~l~~~~i~~ 110 (111)
+|+|++|++|+ ++++|++||+
T Consensus 110 tG~v~~g~vG~-~r~~~~v~G~ 130 (204)
T 1yk9_A 110 TGPVVAGVVGS-RRFRYCVWGD 130 (204)
T ss_dssp EECEEECCCCS-SSCCCCEEEH
T ss_pred eeEEEEEEecC-CCceEEEECh
Confidence 99999999999 5789999986
No 8
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=99.91 E-value=9.6e-24 Score=148.98 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCC-chHHHHHHHHHHHHHHHHHHhhhc-----CCCCce
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNG-DNHAREISRMALAILEAVQSFSIQ-----HKPDAQ 82 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~-~~~a~~~~~~Al~m~~~~~~~~~~-----~~~~l~ 82 (111)
+.||++|+.+++++.+|+ .+++|++||+|||+||.|.... ..|+.+++++|++|++.++.++.. ...+++
T Consensus 34 ~~l~~~~~~~~~~i~~~~----G~v~k~~GD~~~a~fg~p~~~~~~~~a~~a~~~al~i~~~~~~~~~~~~~~~~~~~l~ 109 (198)
T 3r5g_A 34 DLLNNYLNEMSKIALKYG----GTIDKFVGDCVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLE 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT----CEEEEEETTEEEEEESSSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCCE
T ss_pred HHHHHHHHHHHHHHHHcC----CEEEeeeCCEEEEEECCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 678999999999999994 8899999999999999998763 248999999999999999887643 235799
Q ss_pred eEEEEecccEeEEeecCCCccceecccC
Q psy10450 83 LKSGMIEFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 83 lRIGIhtGpvv~GvIG~~~~l~~~~i~~ 110 (111)
+|||||+|||++|++|+..+.+|+++|+
T Consensus 110 ~riGi~~G~v~~g~vG~~~~~~~~v~G~ 137 (198)
T 3r5g_A 110 IRMGINTGYCTVGNFGADTRMDYTIIGR 137 (198)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEESH
T ss_pred EEEEEEEEEEEEEEeCCCcceEEEEECc
Confidence 9999999999999999999999999986
No 9
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=99.90 E-value=1.3e-23 Score=151.56 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCC-chHHHHHHHHHHHHHHHHHHhhhc----------C
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNG-DNHAREISRMALAILEAVQSFSIQ----------H 77 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~-~~~a~~~~~~Al~m~~~~~~~~~~----------~ 77 (111)
+.||++|+.+++++.+|+ .+.+|++||+|||+||.|...+ .+|+.+++++|++|++.++.++.. .
T Consensus 52 ~~Ln~~~~~~~~~i~~~g----G~v~k~iGD~~ma~fg~p~~~~~~~~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~~~~ 127 (219)
T 1wc3_A 52 ELLNEYLGEMTRAVFENQ----GTVDKFVGDAIMALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNE 127 (219)
T ss_dssp HHHHHHHHHHHHHHHHTT----CEEEEEETTEEEEEESSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTT
T ss_pred HHHHHHHHHHHHHHHHcC----CEEEEEEcCeEEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 679999999999999995 7788899999999999997643 248999999999999999887642 2
Q ss_pred CCCceeEEEEecccEeEEeecCCCccceecccC
Q psy10450 78 KPDAQLKSGMIEFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 78 ~~~l~lRIGIhtGpvv~GvIG~~~~l~~~~i~~ 110 (111)
.+++++|||||+|||++|++|+.++.+|++||+
T Consensus 128 ~~~l~~rIGIh~G~v~~G~vG~~~r~~y~v~Gd 160 (219)
T 1wc3_A 128 VPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGP 160 (219)
T ss_dssp CCCCEEEEEEEEEEEEEEEEEETTEEEEEEESH
T ss_pred CCccEEEEEEEeceEEEEEcCCCCeeEEEEECH
Confidence 367999999999999999999999999999996
No 10
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=99.82 E-value=1.4e-19 Score=130.73 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhc------------
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQ------------ 76 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~------------ 76 (111)
+.||++|+.|++++.+| +.+++|++||+|||+||.| .+++++|++|++.+...+.+
T Consensus 36 ~~l~~~~~~~~~~i~~~----~G~v~k~~GD~~ma~fg~p--------~~A~~~Al~i~~~l~~~~w~~~~l~~~~~~~~ 103 (235)
T 1fx2_A 36 DAVAAHHRMVRSLIGRY----KCYEVKTVGDSFMIASKSP--------FAAVQLAQELQLCFLHHDWGTNALDDSYREFE 103 (235)
T ss_dssp HHHHHHHHHHHHHHHHT----TCEEEEEETTEEEEEESCH--------HHHHHHHHHHHHHHHHSCCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc----CCEEEEEcCCeEEEEeCCH--------HHHHHHHHHHHHHHHhCCCchhHhhhhhhhhh
Confidence 78999999999999999 5999999999999999975 34788999999887543211
Q ss_pred ------------------------CCCCceeEEEEecccEeEEeecCCCccceecccC
Q psy10450 77 ------------------------HKPDAQLKSGMIEFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 77 ------------------------~~~~l~lRIGIhtGpvv~GvIG~~~~l~~~~i~~ 110 (111)
..+++++|||||+|||++|++|. +..|+++|+
T Consensus 104 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~riGIh~G~v~~G~~G~--~~~~~v~Gd 159 (235)
T 1fx2_A 104 EQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEV--TKGYDYYGR 159 (235)
T ss_dssp HHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEECTT--SSSEEEESH
T ss_pred hhccccccccCccccccccccccccccCcEEEEEEEeeEEEEEeccc--ccceEEECH
Confidence 11469999999999999999998 568999986
No 11
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=99.79 E-value=2.9e-19 Score=125.75 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEe
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMI 88 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~~~~l~lRIGIh 88 (111)
+.||++|+.|++++.+| +.+++|++||+||++||.| .+++++|++|++.++.++ +++|||||
T Consensus 42 ~~l~~~~~~~~~~i~~~----gG~v~k~~GD~~ma~f~~p--------~~A~~~Al~~~~~l~~~~------l~~riGi~ 103 (184)
T 1ybt_A 42 DLLDNHDTIVCHEIQRF----GGREVNTAGDGFVATFTSP--------SAAIACADDIVDAVAALG------IEVRIGIH 103 (184)
T ss_dssp HHHHHHHHHHHHHHHHT----TCEECCCSSSSEEEEESCH--------HHHHHHHHHHHHHHHTTT------CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHc----CCEEEeEeCCEEEEEeCCH--------HHHHHHHHHHHHHHHhcC------CcEEEEEE
Confidence 68999999999999999 4889999999999999976 368999999999998764 89999999
Q ss_pred cccEeEEeecCCCccceecccC
Q psy10450 89 EFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 89 tGpvv~GvIG~~~~l~~~~i~~ 110 (111)
+|+|++|.+|.. |+++|+
T Consensus 104 ~G~v~~g~ig~~----~~~~G~ 121 (184)
T 1ybt_A 104 AGEVEVRDASHG----TDVAGV 121 (184)
T ss_dssp EEEEEEEECSSC----EEEESH
T ss_pred EeEEEEEecCCC----ceEECc
Confidence 999999998875 999985
No 12
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=99.76 E-value=3.5e-18 Score=119.97 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=71.5
Q ss_pred HHHHHHHHH-HHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcC--CCCceeEE
Q psy10450 9 EDEDKVFKS-FKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQH--KPDAQLKS 85 (111)
Q Consensus 9 e~Ln~lf~~-fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~--~~~l~lRI 85 (111)
..||.+|.. +++++.+| +.+++|++||+|||+||. +.+++++|++|++.++.++... .+++++||
T Consensus 31 ~~l~~~~~~~~~~~i~~~----~G~v~k~~GD~~~a~f~~--------~~~A~~~Al~i~~~l~~~~~~~~~~~~l~~ri 98 (189)
T 3mr7_A 31 NRQKLYRRELIDPAIAQA----GGQIVKTTGDGMLARFDT--------AQAALRCALEIQQAMQQREEDTPRKERIQYRI 98 (189)
T ss_dssp HHHHHHHHHTHHHHHHHT----TCEEEEEETTEEEEEESS--------HHHHHHHHHHHHHHHHHHTTTSCGGGCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHc----CCEEEEEeCCEEEEEeCC--------HHHHHHHHHHHHHHHHHHhhhcccCCceeEEE
Confidence 567888887 99999999 488999999999999994 4789999999999999988553 35799999
Q ss_pred EEecccEeEEeecCCCccceecccC
Q psy10450 86 GMIEFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 86 GIhtGpvv~GvIG~~~~l~~~~i~~ 110 (111)
|||+|||++| +|+++|+
T Consensus 99 Gi~~G~v~~g--------~~~~~G~ 115 (189)
T 3mr7_A 99 GINIGDIVLE--------DGDIFGD 115 (189)
T ss_dssp EEEEEEEEEC--------SSCEESH
T ss_pred EEEEEEEEEE--------CCeEECh
Confidence 9999999999 6888885
No 13
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=99.72 E-value=1.1e-17 Score=130.78 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEe
Q psy10450 9 EDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMI 88 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~~~~~~~~l~lRIGIh 88 (111)
++||++|+.||.++. | +++|+||+||+|||+||+|. +++++|++|++.++..+ ..+++|||||
T Consensus 240 ~lLn~~~~~~~~i~~-~----~g~~iKtiGDa~mavfg~p~--------~a~~~Al~m~~~l~~~~----~~l~iRIGIh 302 (407)
T 1y10_A 240 HLAGRLAGLARDLTA-P----PVWFIKTIGDAVMLVCPDPA--------PLLDTVLKLVEVVDTDN----NFPRLRAGVA 302 (407)
T ss_dssp HHHHHHHHHHHHHCC-T----TCEEEEEETTEEEEEESSHH--------HHHHHHHHHHHHHHTCT----TSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHH-c----CcEEEEEecceEEEEECCHH--------HHHHHHHHHHHHHHHhC----CCceEEEEEE
Confidence 667888888877765 5 59999999999999999764 48899999999988743 4579999999
Q ss_pred cccEeEEeecCCCccceecccC
Q psy10450 89 EFPHHPKLIRDERALSSSQISP 110 (111)
Q Consensus 89 tGpvv~GvIG~~~~l~~~~i~~ 110 (111)
+|||++|+ |+++|+
T Consensus 303 tG~Vv~Gv--------ydv~Gd 316 (407)
T 1y10_A 303 SGMAVSRA--------GDWFGS 316 (407)
T ss_dssp EEEEEEET--------TEEEEH
T ss_pred EEEEEEec--------CccCCC
Confidence 99999994 777775
No 14
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=46.52 E-value=19 Score=22.54 Aligned_cols=23 Identities=4% Similarity=-0.064 Sum_probs=21.1
Q ss_pred ccCChHHHHHHHHHHHHHHHhhC
Q psy10450 4 ELGREEDEDKVFKSFKFLTLKVS 26 (111)
Q Consensus 4 ~~~~~e~Ln~lf~~fd~l~~~~~ 26 (111)
+..|+-++|+|...|+.+..+|+
T Consensus 6 f~~Re~ii~el~~~~~~~l~~Yg 28 (103)
T 1ylx_A 6 FAPRSVVIEEFIDTLEPMMEAYG 28 (103)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHhC
Confidence 56889999999999999999994
No 15
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=36.91 E-value=64 Score=20.50 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCceeEEEEecccE
Q psy10450 59 ISRMALAILEAVQSFSIQHKPDAQLKSGMIEFPH 92 (111)
Q Consensus 59 ~~~~Al~m~~~~~~~~~~~~~~l~lRIGIhtGpv 92 (111)
..+++..+.++.+.+......+ .+++++|+||.
T Consensus 55 ~~~l~~~~~~v~~~l~~~~~~~-~~ni~~n~g~~ 87 (147)
T 1fit_A 55 VADLFQTTQRVGTVVEKHFHGT-SLTFSMQDGPE 87 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCS-EEEEEECCSGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CEEEEEecCCc
Confidence 3444444444444444333333 78999999885
No 16
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=36.27 E-value=28 Score=22.82 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=25.4
Q ss_pred HHHHHHHHH-----HHHHHHhhCCCCCCeEEeeeCcEEEEEeCC
Q psy10450 9 EDEDKVFKS-----FKFLTLKVSPFPLPSQVETIGDAYMVVSGL 47 (111)
Q Consensus 9 e~Ln~lf~~-----fd~l~~~~~~~~~v~KiktiGd~yma~~Gl 47 (111)
+.++++|.. |++++-+| ++.| ||.+|++.-+
T Consensus 87 ~ssre~Fd~~K~WFFnE~~pky----~l~k----GDiFmiiTel 122 (148)
T 3tek_A 87 ETSRELFDGLKKWFFEEAVPRY----NLER----GDIFMISTEL 122 (148)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH----TCCT----TCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhhhh----CCCc----CcEEEEEEEE
Confidence 567778874 78899999 5999 9999998765
No 17
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=35.15 E-value=1.2e+02 Score=26.64 Aligned_cols=34 Identities=35% Similarity=0.603 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCC-CCC
Q psy10450 8 EEDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGL-PER 50 (111)
Q Consensus 8 ~e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Gl-p~~ 50 (111)
.|++..+|...|.+.... .-.| ++ |||+-|. |.+
T Consensus 58 ~e~~~~if~yid~l~~~v----rPrk--ll---yiAiDGVAPrA 92 (1155)
T 3pie_A 58 EEVYSKIFSYIDHLFHTI----KPKQ--TF---YMAIDGVAPRA 92 (1155)
T ss_pred HHHHHHHHHHHHHHHHhc----Ccce--EE---EEEecCCCChh
Confidence 478889999999998755 2444 66 8999998 444
No 18
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=30.67 E-value=89 Score=18.86 Aligned_cols=35 Identities=6% Similarity=-0.080 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEE
Q psy10450 7 REEDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMV 43 (111)
Q Consensus 7 ~~e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma 43 (111)
.+|.+..+...|..++.++||. +.+++..|.--+|
T Consensus 15 ~~e~~~~~~~~~~~~i~~~gg~--i~~~e~wG~R~LA 49 (101)
T 1cqm_A 15 DQSQLALEKEIIQRALENYGAR--VEKVAILGLRRLA 49 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCE--EEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCE--EEEEEeecCcccc
Confidence 4688999999999999999766 7777666655444
No 19
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=29.14 E-value=2.5e+02 Score=23.33 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=40.9
Q ss_pred HHHHHHH-HHHHHHHhhCCCCCCeEEeeeCcEEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHHh-h-hcCCCCceeEEE
Q psy10450 10 DEDKVFK-SFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSF-S-IQHKPDAQLKSG 86 (111)
Q Consensus 10 ~Ln~lf~-~fd~l~~~~~~~~~v~KiktiGd~yma~~Glp~~~~~~~a~~~~~~Al~m~~~~~~~-~-~~~~~~l~lRIG 86 (111)
.|+.+|. ....++ ++ +.+-|-.=||-++++.. ...++++|.++.+.++.. . ....+.+.+.+|
T Consensus 470 aL~~Ff~~~V~~Iv-k~----~G~vIYaGGDDfL~llP---------~d~AlelAe~LRe~F~~~~t~~~~~~~ITiSaG 535 (693)
T 3ung_C 470 ALANFSIREVRSVV-KD----EGLLIYAGGDDVLAILP---------VDKALEVAYKIRKEFGKSFENGSLLPGWKLSAG 535 (693)
T ss_dssp HHHHHHHTHHHHHH-TT----SSEEEEECSSEEEEEEE---------HHHHHHHHHHHHHHHHTC---------CCEEEE
T ss_pred HHHHHHHHHHHHHH-hh----CcEEEEEcCceEEEEee---------HHHHHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3556664 455566 44 57888899999999884 246788888888888763 2 112344566666
Q ss_pred Eec
Q psy10450 87 MIE 89 (111)
Q Consensus 87 Iht 89 (111)
|..
T Consensus 536 VAi 538 (693)
T 3ung_C 536 ILI 538 (693)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 20
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=28.86 E-value=26 Score=20.33 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHHH
Q psy10450 7 REEDEDKVFKSFKF 20 (111)
Q Consensus 7 ~~e~Ln~lf~~fd~ 20 (111)
+.++++.||+.|++
T Consensus 6 ~~~l~d~lF~~Fek 19 (69)
T 1bby_A 6 KQHVLDMLFSAFEK 19 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 35889999999964
No 21
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=28.04 E-value=42 Score=26.04 Aligned_cols=13 Identities=8% Similarity=-0.143 Sum_probs=11.0
Q ss_pred CceeEEEEecccE
Q psy10450 80 DAQLKSGMIEFPH 92 (111)
Q Consensus 80 ~l~lRIGIhtGpv 92 (111)
...+|||+|.|+.
T Consensus 137 ~~pIRIGVN~GSL 149 (406)
T 4g9p_A 137 GKPVRIGANWGSL 149 (406)
T ss_dssp TCCEEEEEEGGGC
T ss_pred cCCceeccccccc
Confidence 3679999999985
No 22
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=27.99 E-value=1.2e+02 Score=19.52 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCCCeEEeeeCcEEEEEeCC-CCCCC------ch--------HHHHHHHHHHHHHHHHHHhhhcCCCCc
Q psy10450 17 SFKFLTLKVSPFPLPSQVETIGDAYMVVSGL-PERNG------DN--------HAREISRMALAILEAVQSFSIQHKPDA 81 (111)
Q Consensus 17 ~fd~l~~~~~~~~~v~KiktiGd~yma~~Gl-p~~~~------~~--------~a~~~~~~Al~m~~~~~~~~~~~~~~l 81 (111)
-|.+++...-+..-+|+ .|..+|+... |.... .+ ..+...+++..+.+..+.+....++ -
T Consensus 14 iFc~Ii~geip~~iV~e----d~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~-~ 88 (149)
T 3ksv_A 14 IFCKIIKGDIPCAKVAE----TSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGS-M 88 (149)
T ss_dssp HHHHHHHTSSCCCEEEE----CSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSC-C
T ss_pred HHHHHHcCCCCccEEEE----CCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCC-C
Confidence 35666764422222333 6666776655 33321 01 1233444554455555555443333 4
Q ss_pred eeEEEEecccE
Q psy10450 82 QLKSGMIEFPH 92 (111)
Q Consensus 82 ~lRIGIhtGpv 92 (111)
.+++++|.||+
T Consensus 89 g~ni~~n~g~~ 99 (149)
T 3ksv_A 89 QYNVLQNNGSL 99 (149)
T ss_dssp EEEEEECCSTT
T ss_pred CEEEEEecCcc
Confidence 88999999995
No 23
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=27.34 E-value=48 Score=25.38 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=11.1
Q ss_pred CceeEEEEecccE
Q psy10450 80 DAQLKSGMIEFPH 92 (111)
Q Consensus 80 ~l~lRIGIhtGpv 92 (111)
...+|||+|.|+.
T Consensus 133 ~~piRIGvN~GSL 145 (366)
T 3noy_A 133 GVAVRIGVNSGSL 145 (366)
T ss_dssp TCEEEEEEEGGGC
T ss_pred CCCEEEecCCcCC
Confidence 4789999999975
No 24
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=27.28 E-value=1.1e+02 Score=18.73 Aligned_cols=29 Identities=0% Similarity=-0.082 Sum_probs=22.1
Q ss_pred HHhhhcCCCCceeEEEEecccEeEEeecC
Q psy10450 71 QSFSIQHKPDAQLKSGMIEFPHHPKLIRD 99 (111)
Q Consensus 71 ~~~~~~~~~~l~lRIGIhtGpvv~GvIG~ 99 (111)
+.+-.....+.++||-++-|+++.|.+--
T Consensus 19 e~~~~~LdGq~~v~i~l~DGs~l~GTvav 47 (101)
T 2e12_A 19 EHWVKLLDGQERVRIELDDGSMIAGTVAV 47 (101)
T ss_dssp HHHHHTSCTTCEEEEEETTSCEEEEEESS
T ss_pred HHHHHhhCCeeEEEEEEcCCCeEeeeecc
Confidence 34444456678999999999999998753
No 25
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=26.67 E-value=1.2e+02 Score=19.22 Aligned_cols=34 Identities=6% Similarity=-0.133 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCceeEEEEecccE
Q psy10450 59 ISRMALAILEAVQSFSIQHKPDAQLKSGMIEFPH 92 (111)
Q Consensus 59 ~~~~Al~m~~~~~~~~~~~~~~l~lRIGIhtGpv 92 (111)
..+++..+.++.+.+.......-.+++++|.||.
T Consensus 61 ~~~l~~~~~~v~~~l~~~~~~~~~~ni~~n~g~~ 94 (149)
T 3o0m_A 61 VAGMAAVGQRIARAARESGLHADGNNIAINDGKA 94 (149)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSEEEEECCCSGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCC
Confidence 3444444444444444331233478999999985
No 26
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=24.80 E-value=97 Score=27.18 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCeEEeeeCcEEEEEeCC
Q psy10450 8 EEDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGL 47 (111)
Q Consensus 8 ~e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd~yma~~Gl 47 (111)
+|.+..+|..+|.+..... -.| .+ |||+-|.
T Consensus 58 ~e~~~~if~yid~l~~~vr----Prk--ll---~iAiDGv 88 (1140)
T 2y35_A 58 EQIFQEIFNYVDKLFYLIK----PQR--LF---FLSVDGV 88 (1140)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CSS--EE---EEECCCS
T ss_pred HHHHHHHHHHHHHHHheec----cce--eE---EEEecCC
Confidence 5788999999999998763 444 55 8999997
No 27
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=24.03 E-value=74 Score=19.70 Aligned_cols=11 Identities=9% Similarity=-0.148 Sum_probs=9.6
Q ss_pred eeEEEEecccE
Q psy10450 82 QLKSGMIEFPH 92 (111)
Q Consensus 82 ~lRIGIhtGpv 92 (111)
..++++|+||.
T Consensus 93 g~ni~~n~g~~ 103 (126)
T 3o1c_A 93 GYRMVVNEGSD 103 (126)
T ss_dssp CEEEECCCHHH
T ss_pred CeEEEEecCCc
Confidence 78999999985
No 28
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=23.33 E-value=1.3e+02 Score=19.03 Aligned_cols=33 Identities=9% Similarity=-0.147 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCceeEEEEecccEe
Q psy10450 60 SRMALAILEAVQSFSIQHKPDAQLKSGMIEFPHH 93 (111)
Q Consensus 60 ~~~Al~m~~~~~~~~~~~~~~l~lRIGIhtGpvv 93 (111)
.+++..+.+..+.+.....+ -.+++++|.||..
T Consensus 56 ~~l~~~~~~v~~~l~~~~~~-~~~ni~~n~g~~~ 88 (149)
T 2eo4_A 56 AELAKVVKLVSLGIKDAVKA-DGLRLLTNIGRSA 88 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEEEEECCCSGGG
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCeEEEEecCcCC
Confidence 33444444444444433333 3789999999863
No 29
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=22.96 E-value=1.2e+02 Score=21.01 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=10.5
Q ss_pred eeEEEEecccEe
Q psy10450 82 QLKSGMIEFPHH 93 (111)
Q Consensus 82 ~lRIGIhtGpvv 93 (111)
.+++|+|.||+-
T Consensus 148 g~ni~~n~G~~a 159 (218)
T 3ano_A 148 GFNVGLNLGTSA 159 (218)
T ss_dssp EEEEEEEESGGG
T ss_pred CEEEEEecCccc
Confidence 899999999874
No 30
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=21.20 E-value=88 Score=17.25 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy10450 9 EDEDKVFKSFKFLTLKV 25 (111)
Q Consensus 9 e~Ln~lf~~fd~l~~~~ 25 (111)
.+|+++++...+++.+|
T Consensus 35 ~dL~eF~qMl~~I~~~~ 51 (56)
T 1oks_A 35 NDLAKFHQMLVKIIMKH 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh
Confidence 68999999999999877
No 31
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.86 E-value=15 Score=21.37 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=14.2
Q ss_pred ccCChHHHHHHHHHHHHHH
Q psy10450 4 ELGREEDEDKVFKSFKFLT 22 (111)
Q Consensus 4 ~~~~~e~Ln~lf~~fd~l~ 22 (111)
|-.|+..||.-|+.+-+++
T Consensus 22 ER~Rm~~lN~aF~~LR~~V 40 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELV 40 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 5567788998887776665
No 32
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=20.38 E-value=59 Score=19.82 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHHHHHh
Q psy10450 7 REEDEDKVFKSFKFLTLK 24 (111)
Q Consensus 7 ~~e~Ln~lf~~fd~l~~~ 24 (111)
++.+|.++|..+|++-+.
T Consensus 58 eerllsrlfeemdelrea 75 (114)
T 2p06_A 58 EERLLSRLFEEMDELREA 75 (114)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457899999999998763
No 33
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=20.31 E-value=87 Score=18.97 Aligned_cols=12 Identities=0% Similarity=-0.451 Sum_probs=10.2
Q ss_pred eeEEEEecccEe
Q psy10450 82 QLKSGMIEFPHH 93 (111)
Q Consensus 82 ~lRIGIhtGpvv 93 (111)
.+++++|+||.-
T Consensus 84 g~ni~~n~g~~a 95 (117)
T 3oj7_A 84 GYRVVNNIGEDA 95 (117)
T ss_dssp CEEEECCCSTTT
T ss_pred CeEEEEcCCCCC
Confidence 889999999853
No 34
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=20.27 E-value=96 Score=18.88 Aligned_cols=31 Identities=10% Similarity=-0.052 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCeEEeeeCc
Q psy10450 7 REEDEDKVFKSFKFLTLKVSPFPLPSQVETIGD 39 (111)
Q Consensus 7 ~~e~Ln~lf~~fd~l~~~~~~~~~v~KiktiGd 39 (111)
.+|....+...|..++.++++. +.+++--|.
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~--i~~ve~WG~ 87 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGAR--VEKVEELGL 87 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCC--CSCCEECCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCE--EEEEecccc
Confidence 4688999999999999999866 666555543
Done!