RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10450
(111 letters)
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 70.0 bits (172), Expect = 3e-16
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQH 77
V+TIGDAYMV SGLPE +HA I+ AL ++E +++ +QH
Sbjct: 82 VKTIGDAYMVASGLPEEALVDHAELIADEALDMVEELKTVLVQH 125
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 64.2 bits (157), Expect = 5e-14
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGM 87
V+TIGDAYM SGLP HA+ ++ MAL +LEA++S +I +++ G+
Sbjct: 54 VKTIGDAYMAASGLP-EPSPAHAQTLAEMALDMLEAIKSVNIHSFEGLRVRVGI 106
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic
and prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions
to bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 56.4 bits (137), Expect = 4e-11
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGM 87
+TIGDA M V GLP + D HA R AL + EA+ + + + L+ +
Sbjct: 47 DKTIGDAVMAVFGLPGAHED-HAERAVRAALEMQEALAELNAEREGGPPLRLRI 99
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be
divided into two major groups; the mononucleotidyl
cyclases (MNC's) and the diguanylate cyclases (DGC's).
The MNC's, which include the adenylate cyclases (AC's)
and the guanylate cyclases (GC's), have a conserved
cyclase homology domain (CHD), while the DGC's have a
conserved GGDEF domain, named after a conserved motif
within this subgroup. Their products, cyclic guanylyl
and adenylyl nucleotides, are second messengers that
play important roles in eukaryotic signal transduction
and prokaryotic sensory pathways.
Length = 133
Score = 33.1 bits (76), Expect = 0.009
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGM 87
++TIGD +MVVSGL +H A + EAV + + +++ G+
Sbjct: 47 IKTIGDEFMVVSGL------DHPAAAVAFAEDMREAVSALNQSEGNPVRVRIGI 94
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 31.4 bits (71), Expect = 0.063
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSF 73
V+ IGD ++ V G P D + LA+ +
Sbjct: 92 VKFIGDGFLAVFGRPSPLEDA-VACALDLQLALRNPLARL 130
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 31.6 bits (72), Expect = 0.070
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 31 PSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEA 69
P+Q+E + +A + + L E N+ R+ S L
Sbjct: 960 PNQIELLDEAVRLAAALDEPPEMNYVRKHSLALKEELLE 998
>gnl|CDD|172020 PRK13384, PRK13384, delta-aminolevulinic acid dehydratase;
Provisional.
Length = 322
Score = 27.4 bits (61), Expect = 1.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 44 VSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQ 82
+S LPE A EI R+ + V F I H DA+
Sbjct: 55 ISRLPESA---LADEIERLYALGIRYVMPFGISHHKDAK 90
>gnl|CDD|199869 cd06248, M14_CP_A-B_like_1, Peptidase M14 carboxypeptidase
subfamily A/B-like; uncharacterized subgroup. The
Peptidase M14 Carboxypeptidase A/B-like subfamily is
one of two main M14 carboxypeptidase subfamilies,
defined by sequence and structural homology, the other
being N/E. Carboxypeptidases (CPs) hydrolyze single,
C-terminal amino acids from polypeptide chains. They
have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Majority of the proteins in this subfamily
have not been characterized as yet. The A/B enzymes are
normally synthesized as inactive precursors containing
preceding signal peptide, followed by a globular
N-terminal pro-region linked to the enzyme; the
proenzymes are called procarboxypeptidases. These
enzymes exhibit distinct substrate specificity pattern;
Carboxypeptidase A-like (CPA-like) enzymes favor
hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues
lysine or arginine. There are nine members in the A/B
family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO
and CPU. CPA1, CPA2 and CPB are produced by the
pancreas. The A forms have slightly different
specificities, with CPA1 preferring aliphatic and small
aromatic residues, and CPA2 preferring the bulkier
aromatic side chains. CPA3 is found in secretory
granules of mast cells and functions in inflammatory
processes. CPA4, detected in hormone-regulated tissues,
is thought to play a role in prostate cancer. CPA5 is
present in discrete regions of pituitary and other
tissues, and cleaves aliphatic C-terminal residues.
CPA6 is highly expressed in embryonic brain and optic
muscle, suggesting that it may play a specific role in
cell migration and axonal guidance. CPU (also called
CPB2) is produced and secreted by the liver as the
inactive precursor PCPU, commonly referred to as
thrombin-activatable fibrinolysis inhibitor (TAFI).
Little is known about CPO but it has been suggested to
have specificity for acidic residues.
Length = 303
Score = 27.2 bits (61), Expect = 1.9
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 16/59 (27%)
Query: 20 FLTLKVSPFPLPSQVETIGDAY-----MVV-----SGLPER-----NGDNHARE-ISRM 62
+L + FP S++ TIG +Y + G + +G HARE IS M
Sbjct: 13 WLRDLQAAFPSNSELFTIGKSYEGRTITGIHIWGSGGKGSKPAIVIHGTVHAREWISTM 71
>gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed.
Length = 364
Score = 25.8 bits (58), Expect = 5.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 4 ELGREEDEDKVFKSFKFLTLK 24
L ++E+K+ KS + LT K
Sbjct: 180 TLELTDEEEKLLKSLQLLTAK 200
>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 867
Score = 25.8 bits (57), Expect = 6.2
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 14/74 (18%)
Query: 32 SQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKP------DAQLKS 85
VE + AY V E++R+ L LE + D ++
Sbjct: 287 RAVERMMKAYFRV--------AKRVSELNRILLQALEERILSLPRRVKKRPLDDDFVERN 338
Query: 86 GMIEFPHHPKLIRD 99
G IE RD
Sbjct: 339 GRIELRDPDLFERD 352
>gnl|CDD|202886 pfam04096, Nucleoporin2, Nucleoporin autopeptidase.
Length = 137
Score = 25.3 bits (56), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 58 EISRMALAILEAVQSFSIQHKPDAQLKSGMIEFP 91
E+S+M+L L +V++F++ K G IEF
Sbjct: 10 ELSKMSLEELSSVENFTVGRK-----GYGSIEFL 38
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 25.5 bits (57), Expect = 7.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 28 FPLPSQVETIGDAYMVVSGLP 48
P P+ E +G+A + +G P
Sbjct: 439 HPHPTLSEALGEAALAAAGKP 459
>gnl|CDD|181690 PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 25.1 bits (55), Expect = 8.4
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 56 AREISRMALAI-LEAVQSFS-IQHKPDAQLKSGMIEFPHHP 94
A + LA+ L+ + F I K + ++S MI+ H P
Sbjct: 69 AAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLP 109
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 25.3 bits (56), Expect = 8.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 50 RNGDNHAREISRMALAILEAVQ---SFSIQHKPDAQLK 84
R+ D ARE + ALA L+AV + + H+P+ L
Sbjct: 18 RSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALA 55
>gnl|CDD|238817 cd01639, IMPase, IMPase, inositol monophosphatase and related
domains. A family of Mg++ dependent phosphatases,
inhibited by lithium, many of which may act on inositol
monophosphate substrate. They dephosphorylate inositol
phosphate to generate inositol, which may be recycled
into inositol lipids; in eukaryotes IMPase plays a vital
role in intracellular signaling. IMPase is one of the
proposed targets of Li+ therapy in manic-depressive
illness. This family contains some bacterial members of
the inositol monophosphatase family classified as
SuhB-like. E. coli SuhB has been suggested to
participate in posstranscriptional control of gene
expression, and its inositol monophosphatase activity
doesn't appear to be sufficient for its cellular
function. It has been proposed, that SuhB plays a role
in the biosynthesis of phosphatidylinositol in
mycobacteria.
Length = 244
Score = 25.2 bits (56), Expect = 9.3
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 32 SQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSF 73
S + + DA +V +G P GDN R ++ A + +AV+
Sbjct: 140 SGRKELKDA-LVATGFPYDRGDNFDRYLNNFAKLLAKAVRGV 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.373
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,640,335
Number of extensions: 481856
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 30
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)