RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10450
(111 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 85.8 bits (213), Expect = 3e-22
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGM 87
VETIGDAY V GL + D HA +I+ MAL ++E H +++ G+
Sbjct: 60 VETIGDAYCVAGGLH-KESDTHAVQIALMALKMMELSDEVMSPHGEPIKMRIGL 112
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 83.1 bits (206), Expect = 2e-21
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGM 87
+E GD+YMVVSG+P D H + ++ AL + L+ G+
Sbjct: 56 IEVSGDSYMVVSGVPRPRPD-HTQALADFALDMTNVAAQLKDPRGNPVPLRVGL 108
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 82.4 bits (204), Expect = 6e-21
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKP 79
VET+GD YM VSGLP +HAR I +AL ++E + +
Sbjct: 65 VETVGDKYMTVSGLP-EPCIHHARSICHLALDMMEIAGQVQVDGES 109
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 79.3 bits (196), Expect = 5e-20
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLK 84
VETIGDAYMVV + D HA + AL + E + ++
Sbjct: 56 VETIGDAYMVVCNVTVPCDD-HADVLLEFALRMHEEA--SRVASSLGEPVR 103
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 73.1 bits (180), Expect = 2e-17
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGM 87
++ +GD Y VSGLPE D HA M + ++EA+ + ++ G+
Sbjct: 80 IKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAISLVREMTGVNVNMRVGI 132
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 69.2 bits (170), Expect = 5e-16
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISR----------MALAILEAVQSFSIQHKPDAQL 83
++TIG YM +GL HA+E R A A++ + + + D +L
Sbjct: 67 IKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKL 126
Query: 84 KSGM 87
+ G+
Sbjct: 127 RVGI 130
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 51.0 bits (122), Expect = 5e-09
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALA-------ILEAVQSFSIQHKPDAQLKSG 86
V+T+GD++M+ S P A+E+ L + ++ + F Q +
Sbjct: 57 VKTVGDSFMIASKSPFAAVQ-LAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTP 115
Query: 87 MIEFPHHPKLIRDERALS 104
R L
Sbjct: 116 PTAHMDPEVYSRLWNGLR 133
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 43.0 bits (101), Expect = 4e-06
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQS 72
++TIGDA M+V P + L ++E V +
Sbjct: 260 IKTIGDAVMLVCPDPA--------PLLDTVLKLVEVVDT 290
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 34.9 bits (81), Expect = 0.002
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 37 IGDAYMVVSGLPERNGD-NHAREISRMALAILEAVQSFSIQHKPDAQLKSGMIEFPHHPK 95
+GDA M + G PE R A +L A++ + + + G++ P
Sbjct: 76 VGDAIMALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQ-----ERGLVGRNEVPP 130
Query: 96 L 96
+
Sbjct: 131 V 131
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 37 IGDAYMVVSGLPERNGD-NHAREISRMALAILEAVQSF 73
+GD MV G P G A M +A+ + ++
Sbjct: 58 VGDCVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKVL 95
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 37 IGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHK 78
+GD +V+ G P D A + + A++ + Q
Sbjct: 63 MGDGILVLFGAPTSQQD-DALRAVACGVEMQLALREVNQQVT 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.017
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 5 LGREEDEDKVFKSFKFLTLKVSPFPLPSQVE---TIGDAYMVVSGLPE--RNGDNHAREI 59
L +E+ +D V K+ L P QVE G +VVSG P+ + R+
Sbjct: 344 LTQEQVQDYVNKTNSHL-------PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 60 SRMALAILEAVQS---FSIQHKPDAQLKSGMIEFPHHPKLIRD 99
A + L+ QS FS + K + + P H L+
Sbjct: 397 K--APSGLD--QSRIPFS-ERKLKFSNRFLPVASPFHSHLLVP 434
Score = 25.0 bits (54), Expect = 6.9
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 32 SQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMIEF- 90
SQ G M G+ A+++ A + FSI + I F
Sbjct: 1626 SQ--EQG---M---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 91 PHHPKLIRD 99
K IR+
Sbjct: 1678 GEKGKRIRE 1686
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.078
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 34/115 (29%)
Query: 1 MKIELGREEDE-DKVFKSFKFLTLKV----SPFPLPSQV-ETIGD-----AYMVVSGLPE 49
IE VF F+FL K+ + + + T+ Y+
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC------ 535
Query: 50 RNGDNHAREISRMALAILEAVQSFSIQHKPDAQLKSGMIEFPHHPKLIRDERALS 104
DN + R+ AIL+ F + + + +I + L+R AL
Sbjct: 536 ---DNDP-KYERLVNAILD----FLPKIEEN------LICSK-YTDLLR--IALM 573
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium
tuberculosis} PDB: 1ybu_A*
Length = 184
Score = 27.6 bits (62), Expect = 0.74
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQ 76
V T GD ++ P A A I++AV + I+
Sbjct: 63 VNTAGDGFVATFTSPSA-----A---IACADDIVDAVAALGIE 97
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 26.3 bits (58), Expect = 2.3
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 52 GDNHAREISRMALAIL 67
+ ++I R AL +
Sbjct: 544 NELAIKKIYRTALGFI 559
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 26.2 bits (58), Expect = 2.3
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 52 GDNHAREISRMALAILEA 69
GD A++ R LA
Sbjct: 450 GDLAAKQPWRNLLAQCLR 467
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 26.1 bits (58), Expect = 2.5
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 30 LPSQV--ETIGDAYMVVSGLPERNGDNHAREISR 61
L S + + +SG N A +++
Sbjct: 153 LCSNYISDFLNIPCSALSG-A-----NIAMDVAM 180
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 25.2 bits (56), Expect = 5.2
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 13 KVFKSFKFLTLKVSPFPLPSQVETIGDAYM-VVSG 46
++ + K LK P LP +VSG
Sbjct: 94 ELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSG 128
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 25.2 bits (56), Expect = 5.5
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 30 LPSQV--ETIGDAYMVVSGLPERNGDNHAREISR 61
L S+V E +G V+ G N A E++
Sbjct: 136 LISEVIGERLGIPMSVLMG-A-----NIASEVAD 163
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 25.4 bits (56), Expect = 5.6
Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 31 PSQVETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDA---QLKSGM 87
P V+ I + G ++ G+ + + + ++ +++ +L G
Sbjct: 170 PQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGE 226
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A
{Saccharomyces cerevisiae}
Length = 386
Score = 25.1 bits (54), Expect = 5.8
Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 8 EEDEDKVFKSFKFLTLKVSPFPLPSQVETIGDAYMVVSGLPERNGDNHAREISRMALAIL 67
+V + + + V + +G +++ + + + + S+ +L
Sbjct: 27 NCYTLEVTEGY-LKKVNV---TEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVL 82
Query: 68 EAVQSFSIQHKPDAQLKSG 86
V+S + D + G
Sbjct: 83 LTVESIVMSLPKDETMLGG 101
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 24.5 bits (54), Expect = 7.4
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 34 VETIGDAYMVVSGLPERNGDNHAREISRMALAILEAVQSFSIQHKPDAQLK 84
V+T GD + + A R AL I +A+Q +++
Sbjct: 53 VKTTGDGMLARFDTAQA-----A---LRCALEIQQAMQQREEDTPRKERIQ 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.373
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,664,965
Number of extensions: 87415
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 30
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)