BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10453
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NKV0|MLF_DROME Myeloid leukemia factor OS=Drosophila melanogaster GN=Mlf PE=1 SV=2
Length = 376
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 73/86 (84%), Gaps = 4/86 (4%)
Query: 84 KVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEER 143
++YQA++ST++ PGG+RET++ V DSRTGVKK+AIGH IG++ HIIE+EQ++RSG+ EER
Sbjct: 119 QIYQASTSTKTGPGGVRETRRTVQDSRTGVKKMAIGHHIGERAHIIEKEQDMRSGQLEER 178
Query: 144 QDFINLDEGIDNEESEAFNQEWRQKA 169
Q+FINL+EG E+E F++E+ +A
Sbjct: 179 QEFINLEEG----EAEQFDREFTSRA 200
>sp|Q99KX1|MLF2_MOUSE Myeloid leukemia factor 2 OS=Mus musculus GN=Mlf2 PE=1 SV=1
Length = 247
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Query: 84 KVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEER 143
KVYQ TS RSAPGGIRET++ V DS +G+++++IGH I D+ HI++R +N R+G+QEER
Sbjct: 118 KVYQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEER 177
Query: 144 QDFINLDEGIDNEESEAFNQEWRQK 168
QD+INLDE E+ AF+ EWR++
Sbjct: 178 QDYINLDE----SEAAAFDDEWRRE 198
>sp|Q15773|MLF2_HUMAN Myeloid leukemia factor 2 OS=Homo sapiens GN=MLF2 PE=1 SV=1
Length = 248
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Query: 84 KVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEER 143
KVYQ TS RSAPGGIRET++ V DS +G+++++IGH I D+ HI++R +N R+G+QEER
Sbjct: 119 KVYQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEER 178
Query: 144 QDFINLDEGIDNEESEAFNQEWRQK 168
QD+INLDE E+ AF+ EWR++
Sbjct: 179 QDYINLDE----SEAAAFDDEWRRE 199
>sp|Q5R4T3|MLF1_PONAB Myeloid leukemia factor 1 OS=Pongo abelii GN=MLF1 PE=2 SV=1
Length = 268
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 65/82 (79%), Gaps = 4/82 (4%)
Query: 84 KVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEER 143
KV+QA++ TR APGGI+ET+KA+ DS +G++K+AIGH I D+ H+I++ +N ++G++E
Sbjct: 122 KVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVN 181
Query: 144 QDFINLDEGIDNEESEAFNQEW 165
Q+FIN++E ++ AF++EW
Sbjct: 182 QEFINMNES----DAHAFDEEW 199
>sp|P58340|MLF1_HUMAN Myeloid leukemia factor 1 OS=Homo sapiens GN=MLF1 PE=1 SV=1
Length = 268
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 65/82 (79%), Gaps = 4/82 (4%)
Query: 84 KVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEER 143
KV+QA++ TR APGGI+ET+KA+ DS +G++K+AIGH I D+ H+I++ +N ++G++E
Sbjct: 122 KVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVN 181
Query: 144 QDFINLDEGIDNEESEAFNQEW 165
Q+FIN++E ++ AF++EW
Sbjct: 182 QEFINMNE----SDAHAFDEEW 199
>sp|Q32KY3|MLF1_BOVIN Myeloid leukemia factor 1 OS=Bos taurus GN=MLF1 PE=2 SV=1
Length = 270
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Query: 84 KVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEER 143
KV+QA++ TR APGGI+ET+KA+ DS +G++K+A+GH + D+ H+I++ +N ++G++E
Sbjct: 122 KVFQASTQTRRAPGGIKETRKALRDSDSGLEKMAVGHHLHDRAHVIKKSKNNKTGDEEVN 181
Query: 144 QDFINLDEGIDNEESEAFNQEW 165
Q+FIN++E ++ AF+ EW
Sbjct: 182 QEFINMNEC----DAHAFDDEW 199
>sp|Q9QWV4|MLF1_MOUSE Myeloid leukemia factor 1 OS=Mus musculus GN=Mlf1 PE=1 SV=1
Length = 267
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 63/82 (76%), Gaps = 4/82 (4%)
Query: 84 KVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEER 143
KV+QA++ TR APGG++ET+KA+ DS +G++++A+GH I D+ H+I + +N ++G++E
Sbjct: 122 KVFQASTQTRRAPGGVKETRKAMRDSDSGLERMAVGHHIHDRGHVIRKSKNNKTGDEEVN 181
Query: 144 QDFINLDEGIDNEESEAFNQEW 165
Q+FIN++E ++ AF+ EW
Sbjct: 182 QEFINMNE----SDAHAFDDEW 199
>sp|Q9UPN6|SCAF8_HUMAN Protein SCAF8 OS=Homo sapiens GN=SCAF8 PE=1 SV=1
Length = 1271
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 45 EITGDPETEKPTSLLGLLWNKVEDTLSVSIESLKEMQYQKVYQATSSTRSAPGGIRETKK 104
E + +P+ E P S L + V +++ I +++Q Q + + T +
Sbjct: 274 EHSEEPKKEIPASQLSHVSESVNNSIFHQIA--EQLQQQNLEHLRQQLLEQQQPQKATPQ 331
Query: 105 AVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQEERQDFINLDEGIDNEESEAFNQE 164
+ G + A ++H +E E NL ++QD +++DEG D E E F QE
Sbjct: 332 DSQEGTFGSEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQD-MDIDEGQDGVEEEVFEQE 390
Query: 165 WRQKA 169
++ A
Sbjct: 391 AKKVA 395
>sp|Q2N9B9|RL29_ERYLH 50S ribosomal protein L29 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rpmC PE=3 SV=1
Length = 68
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 62 LWNKVEDTLSVSIESLKEMQYQKVYQATSSTRSAPGGIRETKKAVCDSRT 111
L K +D L+ + LK+ Q+ +QA ++ AP IRE ++++ +T
Sbjct: 7 LRQKSDDQLAEELVQLKKEQFNLRFQAATNQLEAPARIREVRRSIAQIKT 56
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,641,671
Number of Sequences: 539616
Number of extensions: 2727708
Number of successful extensions: 7811
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 7777
Number of HSP's gapped (non-prelim): 70
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)