Query psy10453
Match_columns 184
No_of_seqs 89 out of 91
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 18:36:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10248 Mlf1IP: Myelodysplasi 100.0 1.2E-47 2.7E-52 316.6 6.4 108 57-169 64-176 (176)
2 KOG4049|consensus 100.0 7.9E-47 1.7E-51 323.1 4.8 107 66-176 96-207 (248)
3 PF07450 HycH: Formate hydroge 29.6 25 0.00053 28.9 0.8 10 114-123 29-38 (131)
4 PF04431 Pec_lyase_N: Pectate 26.8 39 0.00085 23.9 1.3 14 159-172 3-16 (56)
5 PRK15084 formate hydrogenlyase 26.8 29 0.00062 28.6 0.7 34 114-151 31-65 (133)
6 PF10204 DuoxA: Dual oxidase m 19.9 1.3E+02 0.0028 27.4 3.5 56 116-175 89-144 (281)
7 cd05885 Ig2_Necl-4 Second immu 13.0 5.5E+02 0.012 18.6 5.0 39 68-106 35-78 (80)
8 KOG3802|consensus 11.8 1.5E+02 0.0033 28.3 2.0 20 149-168 199-218 (398)
9 KOG4100|consensus 9.9 2.2E+02 0.0049 23.4 2.1 30 137-170 33-65 (125)
10 PF12160 Fibrinogen_aC: Fibrin 8.6 5E+02 0.011 19.4 3.3 22 92-113 24-45 (69)
No 1
>PF10248 Mlf1IP: Myelodysplasia-myeloid leukemia factor 1-interacting protein; InterPro: IPR019376 Myeloid leukemia factor is involved in lineage commitment of primary hemopoietic progenitors by restricting erythroid formation and enhancing myeloid formation [].
Probab=100.00 E-value=1.2e-47 Score=316.56 Aligned_cols=108 Identities=48% Similarity=0.804 Sum_probs=99.4
Q ss_pred hhhhhhhcCCCCCeeEeeeeeeee-----eCceEEEEeeeeEecCCCeeEEEEeeecCcccceeeeeeccCCCceeeEEE
Q psy10453 57 SLLGLLWNKVEDTLSVSIESLKEM-----QYQKVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIER 131 (184)
Q Consensus 57 sl~~~~~n~~~~~~sfsSSSv~ty-----g~p~vyqassstR~~pgGIkETrr~v~DS~TG~ekmaIgh~IGDR~HiIeR 131 (184)
.+|..+.+ .|++++||||||||| |+|+|||+||+||+|||||||||++|+||+||++||+||||||||+|+|+|
T Consensus 64 ~~~~~~~~-~p~~~sfsSSsv~sys~~~~g~p~vyq~Ss~tr~~pggi~Et~~~~~DS~sG~ekm~ig~~Igdr~H~v~r 142 (176)
T PF10248_consen 64 RNFNQMSP-DPNSHSFSSSSVMSYSSGPDGPPKVYQASSSTRTAPGGIKETRRTVRDSDSGLEKMAIGHHIGDRGHVVER 142 (176)
T ss_pred HHHhcccc-CCCCceeeeeeEEEeccCCCCCCeEEEEeeEEEecCCCchhhhhhhhcccchhhhhhccccccCceeEEEE
Confidence 33444433 369999999999999 459999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcchhhhhhccccCCCCCchhhHHhHHHHHHHH
Q psy10453 132 EQNLRSGEQEERQDFINLDEGIDNEESEAFNQEWRQKA 169 (184)
Q Consensus 132 ~rN~~tG~~Ee~Q~fiNLdE~~~~~Ea~~FD~EW~~~a 169 (184)
++|.+||++|++|+||||+| +||++||+||++++
T Consensus 143 ~~n~~tG~~e~~q~~~NL~E----~ea~~Fd~eW~~~~ 176 (176)
T PF10248_consen 143 KRNRKTGDVEERQDFINLDE----DEAEDFDEEWQRRV 176 (176)
T ss_pred eecCCCCcchhhhhhcCCCh----hHHHHHhHHHhhcC
Confidence 99989999999999999999 99999999999874
No 2
>KOG4049|consensus
Probab=100.00 E-value=7.9e-47 Score=323.15 Aligned_cols=107 Identities=46% Similarity=0.769 Sum_probs=103.0
Q ss_pred CCCCeeEeeeeeeee-----eCceEEEEeeeeEecCCCeeEEEEeeecCcccceeeeeeccCCCceeeEEEeecCCCcch
Q psy10453 66 VEDTLSVSIESLKEM-----QYQKVYQATSSTRSAPGGIRETKKAVCDSRTGVKKLAIGHAIGDKEHIIEREQNLRSGEQ 140 (184)
Q Consensus 66 ~~~~~sfsSSSv~ty-----g~p~vyqassstR~~pgGIkETrr~v~DS~TG~ekmaIgh~IGDR~HiIeR~rN~~tG~~ 140 (184)
.||+++||||||+|| |+|||||+|++||+|||||+||||+|+||++|+|||+||||||||+|||+|++|.+||++
T Consensus 96 ~pn~~sf~sssvmtmS~gpDg~PkVyQatt~tr~apGgvrETRRtvrDSdsGlekMsIGHhIgDRAHiI~Ksrd~RtGd~ 175 (248)
T KOG4049|consen 96 GPNGGSFCSSSVMTMSIGPDGKPKVYQATTRTRTAPGGVRETRRTVRDSDSGLEKMSIGHHIGDRAHIIDKSRDMRTGDV 175 (248)
T ss_pred CCCCcceeeeeeEEeecCCCCCcchhhhccccccCCCchhhhhhhhhccccchhhhccccccchhHhHhhhhcccccccH
Confidence 479999999999999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCCchhhHHhHHHHHHHHhhccccc
Q psy10453 141 EERQDFINLDEGIDNEESEAFNQEWRQKAREAQLLQ 176 (184)
Q Consensus 141 Ee~Q~fiNLdE~~~~~Ea~~FD~EW~~~ar~~lp~~ 176 (184)
|++|+|||||| .||++||+||+++|..+.|.-
T Consensus 176 eerQefiNLdE----seA~qfd~ew~se~s~~~p~R 207 (248)
T KOG4049|consen 176 EERQEFINLDE----SEAPQFDTEWASEASAIMPAR 207 (248)
T ss_pred HHHHHhhcccc----cchhhHhHHHHHHHHhcccCC
Confidence 99999999999 999999999999998877653
No 3
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=29.64 E-value=25 Score=28.92 Aligned_cols=10 Identities=60% Similarity=0.996 Sum_probs=8.7
Q ss_pred eeeeeeccCC
Q psy10453 114 KKLAIGHAIG 123 (184)
Q Consensus 114 ekmaIgh~IG 123 (184)
=.++||||+|
T Consensus 29 YSLaIGHhvG 38 (131)
T PF07450_consen 29 YSLAIGHHVG 38 (131)
T ss_pred EEeeeccccc
Confidence 3689999999
No 4
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=26.76 E-value=39 Score=23.90 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=11.4
Q ss_pred HHhHHHHHHHHhhc
Q psy10453 159 EAFNQEWRQKAREA 172 (184)
Q Consensus 159 ~~FD~EW~~~ar~~ 172 (184)
..||+=||++|..+
T Consensus 3 ~efDeyW~~Ra~eA 16 (56)
T PF04431_consen 3 GEFDEYWQKRAEEA 16 (56)
T ss_pred chHHHHHHHHHHHH
Confidence 46999999998654
No 5
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=26.75 E-value=29 Score=28.65 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=18.2
Q ss_pred eeeeeeccCCCceeeEEEeecCCCcchhhhhhcc-ccCC
Q psy10453 114 KKLAIGHAIGDKEHIIEREQNLRSGEQEERQDFI-NLDE 151 (184)
Q Consensus 114 ekmaIgh~IGDR~HiIeR~rN~~tG~~Ee~Q~fi-NLdE 151 (184)
=.++||||+| +|.=-...-.=..++-+.+| +|.|
T Consensus 31 YSLaIGHhvG----vIDcle~~L~~~~e~y~~wi~~l~~ 65 (133)
T PRK15084 31 YSLAIGHHVG----VIDCLEAALTCPLDEYLAWIATLEE 65 (133)
T ss_pred EEeecccccc----eEecchhhhcCCHHHHHHHHHhCCh
Confidence 3689999999 44322222233344455555 4444
No 6
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=19.91 E-value=1.3e+02 Score=27.45 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=42.4
Q ss_pred eeeeccCCCceeeEEEeecCCCcchhhhhhccccCCCCCchhhHHhHHHHHHHHhhcccc
Q psy10453 116 LAIGHAIGDKEHIIEREQNLRSGEQEERQDFINLDEGIDNEESEAFNQEWRQKAREAQLL 175 (184)
Q Consensus 116 maIgh~IGDR~HiIeR~rN~~tG~~Ee~Q~fiNLdE~~~~~Ea~~FD~EW~~~ar~~lp~ 175 (184)
-.||=|||=++==|+=+-+. -++.. +=||-+|-++-..++.+++|.++..++.||.
T Consensus 89 A~iGl~IGL~~vNITL~g~p-~~q~~---etIdyNE~F~w~~~~~~~~ey~~al~kGLP~ 144 (281)
T PF10204_consen 89 AKIGLHIGLRGVNITLKGTP-VQQLN---ETIDYNERFTWRGGENMAEEYREALEKGLPY 144 (281)
T ss_pred eeEEEEEecceEEEEEEecc-hhhcC---CCCCCCceeEecCchhHHHHHHHHHHcCCCh
Confidence 35888888888888877652 22222 3567777777778899999999999999995
No 7
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=13.02 E-value=5.5e+02 Score=18.59 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=27.5
Q ss_pred CCeeEeeeeeeee-----eCceEEEEeeeeEecCCCeeEEEEee
Q psy10453 68 DTLSVSIESLKEM-----QYQKVYQATSSTRSAPGGIRETKKAV 106 (184)
Q Consensus 68 ~~~sfsSSSv~ty-----g~p~vyqassstR~~pgGIkETrr~v 106 (184)
+.-+|+.+|+.+| ...+.|.=-.+.-.+|+|.+||...+
T Consensus 35 ~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l 78 (80)
T cd05885 35 NGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSL 78 (80)
T ss_pred CCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEE
Confidence 4667887887788 34566666666667788888887654
No 8
>KOG3802|consensus
Probab=11.83 E-value=1.5e+02 Score=28.34 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.8
Q ss_pred cCCCCCchhhHHhHHHHHHH
Q psy10453 149 LDEGIDNEESEAFNQEWRQK 168 (184)
Q Consensus 149 LdE~~~~~Ea~~FD~EW~~~ 168 (184)
-+|++|.+|++.|-+++|++
T Consensus 199 ~ed~~~leELEqFAK~FKqR 218 (398)
T KOG3802|consen 199 DEDTPDLEELEQFAKTFKQR 218 (398)
T ss_pred cccccCHHHHHHHHHHHHhh
Confidence 35677779999999999986
No 9
>KOG4100|consensus
Probab=9.92 E-value=2.2e+02 Score=23.35 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=23.0
Q ss_pred Ccchhhhhhcc---ccCCCCCchhhHHhHHHHHHHHh
Q psy10453 137 SGEQEERQDFI---NLDEGIDNEESEAFNQEWRQKAR 170 (184)
Q Consensus 137 tG~~Ee~Q~fi---NLdE~~~~~Ea~~FD~EW~~~ar 170 (184)
=|++=.+.+|. +.+- .+|..|=.||+..|.
T Consensus 33 lGD~YVkdEFrrHk~vnp----~~~~~FlteW~~Ya~ 65 (125)
T KOG4100|consen 33 LGDQYVKDEFRRHKTVNP----LEAQGFLTEWERYAV 65 (125)
T ss_pred HHHHHHHHHHHHhccCCh----HHHHHHHHHHHHHHH
Confidence 46666666775 5555 999999999998874
No 10
>PF12160 Fibrinogen_aC: Fibrinogen alpha C domain; InterPro: IPR021996 This domain family is found in eukaryotes, and is approximately 70 amino acids in length, and the family is found in association with PF08702 from PFAM. This domain is the C-terminal domain of fibrinogen in mammals. The domain lies in the C-terminal half of the alpha C region in these proteins. The function of the domain is that of intramolecular and intermolecular interactions to form fibrin. ; PDB: 2BAF_A 2JOR_A.
Probab=8.61 E-value=5e+02 Score=19.36 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=14.5
Q ss_pred eEecCCCeeEEEEeeecCcccc
Q psy10453 92 TRSAPGGIRETKKAVCDSRTGV 113 (184)
Q Consensus 92 tR~~pgGIkETrr~v~DS~TG~ 113 (184)
|-.+|+|.||.-+.|-.|+.|-
T Consensus 24 tVvgpdG~kE~~~Evv~s~dGs 45 (69)
T PF12160_consen 24 TVVGPDGPKEETKEVVTSEDGS 45 (69)
T ss_dssp EEEETTTEEEEEEEEEB-SSSS
T ss_pred EEeCCCCCcEEEEEEeecCCCc
Confidence 3458999888777665665553
Done!