Query psy10453
Match_columns 184
No_of_seqs 89 out of 91
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 18:36:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nh2_B Transcription initiatio 18.1 67 0.0023 21.3 2.0 28 142-171 20-47 (53)
2 3hdf_A Lysozyme; antimicrobial 18.0 60 0.002 24.4 2.0 26 95-121 2-31 (140)
3 1nvp_B Transcription initiatio 16.1 59 0.002 21.9 1.4 28 142-171 24-51 (57)
4 1auu_A SACY; antitermination, 11.5 1.2E+02 0.0042 20.0 1.9 14 111-124 17-30 (55)
5 2wjv_D Regulator of nonsense t 11.2 1.3E+02 0.0044 21.8 2.1 18 153-170 4-21 (97)
6 1svj_A Potassium-transporting 8.0 1E+02 0.0035 23.6 0.5 15 73-87 12-26 (156)
7 1l1c_A Transcription antitermi 7.4 1.9E+02 0.0066 19.0 1.6 15 110-124 17-31 (55)
8 1swy_A Lysozyme; RB+ binding s 6.5 2.2E+02 0.0076 21.4 1.8 22 103-125 15-36 (164)
9 2baf_A Fibrinogen alpha chain; 6.4 1.9E+02 0.0066 23.6 1.4 23 92-114 58-80 (166)
10 4e97_A Lysozyme; hydrolase, al 6.0 2.4E+02 0.0083 21.7 1.8 22 103-125 38-59 (187)
No 1
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=18.13 E-value=67 Score=21.33 Aligned_cols=28 Identities=32% Similarity=0.669 Sum_probs=22.4
Q ss_pred hhhhccccCCCCCchhhHHhHHHHHHHHhh
Q psy10453 142 ERQDFINLDEGIDNEESEAFNQEWRQKARE 171 (184)
Q Consensus 142 e~Q~fiNLdE~~~~~Ea~~FD~EW~~~ar~ 171 (184)
-|++|. +||+|..-+++-.+-|+.|.-+
T Consensus 20 vr~~F~--~~Gvde~vL~eLk~~We~KL~~ 47 (53)
T 1nh2_B 20 VREDFE--NAGIDEQTLQDLKNIWQKKLTE 47 (53)
T ss_dssp THHHHH--HTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH--HcCCcHHHHHHHHHHHHHHHHH
Confidence 366776 5578879999999999999754
No 2
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21}
Probab=17.96 E-value=60 Score=24.44 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=17.2
Q ss_pred cCCCeeE----EEEeeecCcccceeeeeecc
Q psy10453 95 APGGIRE----TKKAVCDSRTGVKKLAIGHA 121 (184)
Q Consensus 95 ~pgGIkE----Trr~v~DS~TG~ekmaIgh~ 121 (184)
+|+||+. ..++++|+ .|+-++-+||.
T Consensus 2 ~~~~Ik~~EG~~~~~Y~D~-~G~~TIGyGht 31 (140)
T 3hdf_A 2 GPSGNDGLEGVSYIPYKDI-VGVWTVCHGHT 31 (140)
T ss_dssp -----CCCTTCEEEEEECT-TSCEEEETTBC
T ss_pred CCCccccccCCcccceeCC-CCCeEEEeccc
Confidence 5888865 45788998 69999999998
No 3
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=16.08 E-value=59 Score=21.94 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=21.7
Q ss_pred hhhhccccCCCCCchhhHHhHHHHHHHHhh
Q psy10453 142 ERQDFINLDEGIDNEESEAFNQEWRQKARE 171 (184)
Q Consensus 142 e~Q~fiNLdE~~~~~Ea~~FD~EW~~~ar~ 171 (184)
-|++|. +||+|..-+++..+-|+.|.-+
T Consensus 24 vr~~F~--~~Gvde~vL~eLk~~We~KL~~ 51 (57)
T 1nvp_B 24 VRDIFL--DDGVDEQVLMELKTLWENKLMQ 51 (57)
T ss_dssp HHHHHH--HHTCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHH--HcCCCHHHHHHHHHHHHHHHHH
Confidence 467776 4577779999999999998753
No 4
>1auu_A SACY; antitermination, RNA binding domain, transcription regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=11.46 E-value=1.2e+02 Score=20.03 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.7
Q ss_pred ccceeeeeeccCCC
Q psy10453 111 TGVKKLAIGHAIGD 124 (184)
Q Consensus 111 TG~ekmaIgh~IGD 124 (184)
.|.|.+.+|++||=
T Consensus 17 ~~~E~Iv~GkGIGF 30 (55)
T 1auu_A 17 QNEEKILLGAGIAF 30 (55)
T ss_dssp SSSEEEEECTTSST
T ss_pred CCcEEEEEecccee
Confidence 68899999999994
No 5
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger, ATP-binding, RNA-binding, nonsense-M mRNA decay, nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Probab=11.17 E-value=1.3e+02 Score=21.78 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=13.8
Q ss_pred CCchhhHHhHHHHHHHHh
Q psy10453 153 IDNEESEAFNQEWRQKAR 170 (184)
Q Consensus 153 ~~~~Ea~~FD~EW~~~ar 170 (184)
.+..|.++||+|++.=..
T Consensus 4 ~~~~ed~eFdre~~kmm~ 21 (97)
T 2wjv_D 4 VPCVEDEDFIQALDKMML 21 (97)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHH
Confidence 455888999999987554
No 6
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=7.96 E-value=1e+02 Score=23.62 Aligned_cols=15 Identities=0% Similarity=-0.090 Sum_probs=4.4
Q ss_pred eeeeeeeeeCceEEE
Q psy10453 73 SIESLKEMQYQKVYQ 87 (184)
Q Consensus 73 sSSSv~tyg~p~vyq 87 (184)
-||-+||||.|+|-.
T Consensus 12 ~~~~tit~gnr~vt~ 26 (156)
T 1svj_A 12 HSSGHGGRHNRQASE 26 (156)
T ss_dssp ---------CEEEEE
T ss_pred CCCCceecCCCeEEE
Confidence 357779999998744
No 7
>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=7.40 E-value=1.9e+02 Score=19.00 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=13.1
Q ss_pred cccceeeeeeccCCC
Q psy10453 110 RTGVKKLAIGHAIGD 124 (184)
Q Consensus 110 ~TG~ekmaIgh~IGD 124 (184)
+.|.|.+.+|++||=
T Consensus 17 ~~~~E~Iv~GkGIGF 31 (55)
T 1l1c_A 17 EQGKELVVMGRGLAF 31 (55)
T ss_dssp TTSCEEEEECSSSST
T ss_pred CCCCEEEEEecccee
Confidence 468899999999994
No 8
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=6.48 E-value=2.2e+02 Score=21.43 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=17.9
Q ss_pred EEeeecCcccceeeeeeccCCCc
Q psy10453 103 KKAVCDSRTGVKKLAIGHAIGDK 125 (184)
Q Consensus 103 rr~v~DS~TG~ekmaIgh~IGDR 125 (184)
.+.++|+ .|+-++.+||.++.+
T Consensus 15 ~~~Y~D~-~G~~TIGyGht~~~~ 36 (164)
T 1swy_A 15 LKIYKDT-EGYYTIGIGHLLTKS 36 (164)
T ss_dssp EEEEECT-TSCEEEETTEECCSC
T ss_pred ceeeECC-CCCEEEeECcccCCC
Confidence 3577888 599999999998765
No 9
>2baf_A Fibrinogen alpha chain; beta hairpin, blood clotting; NMR {Bos taurus} PDB: 2jor_A
Probab=6.37 E-value=1.9e+02 Score=23.58 Aligned_cols=23 Identities=35% Similarity=0.409 Sum_probs=17.3
Q ss_pred eEecCCCeeEEEEeeecCcccce
Q psy10453 92 TRSAPGGIRETKKAVCDSRTGVK 114 (184)
Q Consensus 92 tR~~pgGIkETrr~v~DS~TG~e 114 (184)
|-.+|+|=||.-+.|-+|+.|-+
T Consensus 58 tVvgPDG~kE~~kEvv~SeDGsD 80 (166)
T 2baf_A 58 TVTNADGRTETTKEVVKSEDGSD 80 (166)
T ss_dssp EECCTTSCCEECCEEECCSSCSS
T ss_pred EEeCCCCCceEEEEEEecCCCcc
Confidence 33499999888777777777753
No 10
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=5.98 E-value=2.4e+02 Score=21.71 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=17.5
Q ss_pred EEeeecCcccceeeeeeccCCCc
Q psy10453 103 KKAVCDSRTGVKKLAIGHAIGDK 125 (184)
Q Consensus 103 rr~v~DS~TG~ekmaIgh~IGDR 125 (184)
.++++|+ -|+-++.|||.|-++
T Consensus 38 ~~~Y~D~-~G~~TIGyGHli~~~ 59 (187)
T 4e97_A 38 LKIYKDC-EGYYTIGIGHLLTKS 59 (187)
T ss_dssp EEEEECT-TSCEEEETTEECCSC
T ss_pred ceeeECC-CCCceeccCeEecCC
Confidence 4577898 599999999988654
Done!