Query psy10453
Match_columns 184
No_of_seqs 89 out of 91
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 18:37:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10453.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10453hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nh2b_ a.32.1.1 (B:) Large ch 14.0 42 0.0031 20.5 1.8 27 142-170 19-45 (46)
2 d1nvpb_ a.32.1.1 (B:) Large ch 11.0 44 0.0032 20.2 1.2 27 141-169 16-42 (43)
3 d1e3oc2 a.35.1.1 (C:1-75) Oct- 9.6 86 0.0062 20.9 2.4 18 151-168 2-19 (75)
4 d1swya_ d.2.1.3 (A:) Phage T4 8.3 76 0.0055 21.9 1.8 22 103-125 15-36 (164)
5 d1l1ca_ b.35.2.1 (A:) LicT {Ba 7.8 1.1E+02 0.008 18.8 2.2 15 110-124 17-31 (55)
6 d2qn6a2 b.44.1.1 (A:321-415) I 7.2 98 0.0071 21.1 1.9 27 102-129 62-88 (95)
7 d1k28a3 d.2.1.3 (A:130-345) Ta 6.6 1E+02 0.0074 22.9 1.9 20 104-124 60-79 (216)
8 d1auua_ b.35.2.1 (A:) SacY {Ba 6.3 1.1E+02 0.0081 18.8 1.6 14 111-124 17-30 (55)
9 d1s0ua2 b.44.1.1 (A:348-437) I 5.9 1.3E+02 0.0094 20.3 2.0 27 101-129 57-83 (90)
10 d3ezma_ b.89.1.1 (A:) Cyanovir 5.9 62 0.0045 21.5 0.2 28 128-157 68-95 (101)
No 1
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.96 E-value=42 Score=20.50 Aligned_cols=27 Identities=33% Similarity=0.670 Sum_probs=21.9
Q ss_pred hhhhccccCCCCCchhhHHhHHHHHHHHh
Q psy10453 142 ERQDFINLDEGIDNEESEAFNQEWRQKAR 170 (184)
Q Consensus 142 e~Q~fiNLdE~~~~~Ea~~FD~EW~~~ar 170 (184)
.|++|.+ ||+|..-+++--+-|+.|..
T Consensus 19 vR~dF~~--~Gvde~vL~eLk~~We~Kl~ 45 (46)
T d1nh2b_ 19 VREDFEN--AGIDEQTLQDLKNIWQKKLT 45 (46)
T ss_dssp THHHHHH--TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCcHHHHHHHHHHHHHHhc
Confidence 4778864 47777999999999999864
No 2
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.01 E-value=44 Score=20.21 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=21.3
Q ss_pred hhhhhccccCCCCCchhhHHhHHHHHHHH
Q psy10453 141 EERQDFINLDEGIDNEESEAFNQEWRQKA 169 (184)
Q Consensus 141 Ee~Q~fiNLdE~~~~~Ea~~FD~EW~~~a 169 (184)
..|++|.+ +|+|..-+++--+-|+.|.
T Consensus 16 ~vR~~F~~--~GvDe~vL~eLk~~We~KL 42 (43)
T d1nvpb_ 16 DVRDIFLD--DGVDEQVLMELKTLWENKL 42 (43)
T ss_dssp HHHHHHHH--HTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcHHHHHHHHHHHHHhc
Confidence 35788864 4777799999999999874
No 3
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.55 E-value=86 Score=20.93 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=14.8
Q ss_pred CCCCchhhHHhHHHHHHH
Q psy10453 151 EGIDNEESEAFNQEWRQK 168 (184)
Q Consensus 151 E~~~~~Ea~~FD~EW~~~ 168 (184)
|+.|.+|++.|-++++++
T Consensus 2 ~~~~l~Ele~Fa~~fk~r 19 (75)
T d1e3oc2 2 EPSDLEELEQFAKTFKQR 19 (75)
T ss_dssp CSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 356668999999999876
No 4
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=8.26 E-value=76 Score=21.92 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.1
Q ss_pred EEeeecCcccceeeeeeccCCCc
Q psy10453 103 KKAVCDSRTGVKKLAIGHAIGDK 125 (184)
Q Consensus 103 rr~v~DS~TG~ekmaIgh~IGDR 125 (184)
.+.+.|| .|+-++.+||.|.+.
T Consensus 15 ~~~Y~D~-~G~~TIGyGh~~~~~ 36 (164)
T d1swya_ 15 LKIYKDT-EGYYTIGIGHLLTKS 36 (164)
T ss_dssp EEEEECT-TSCEEEETTEECCSC
T ss_pred ceeeeCC-CCCeEEeECccccCC
Confidence 4578898 599999999999664
No 5
>d1l1ca_ b.35.2.1 (A:) LicT {Bacillus subtilis [TaxId: 1423]}
Probab=7.83 E-value=1.1e+02 Score=18.78 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=13.4
Q ss_pred cccceeeeeeccCCC
Q psy10453 110 RTGVKKLAIGHAIGD 124 (184)
Q Consensus 110 ~TG~ekmaIgh~IGD 124 (184)
+.|.|.+.+|++||=
T Consensus 17 ~~~~E~Iv~GkGIGF 31 (55)
T d1l1ca_ 17 EQGKELVVMGRGLAF 31 (55)
T ss_dssp TTSCEEEEECSSSST
T ss_pred CCCCEEEEEEcccee
Confidence 578999999999994
No 6
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.24 E-value=98 Score=21.12 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=19.7
Q ss_pred EEEeeecCcccceeeeeeccCCCceeeE
Q psy10453 102 TKKAVCDSRTGVKKLAIGHAIGDKEHII 129 (184)
Q Consensus 102 Trr~v~DS~TG~ekmaIgh~IGDR~HiI 129 (184)
=++-+| ...|-+|+||+|.|+.|=+.|
T Consensus 62 L~~Pvc-a~~g~~rVaiSRri~~rWRLI 88 (95)
T d2qn6a2 62 LRRPVA-VWSNNIRTVISRQIAGRWRMI 88 (95)
T ss_dssp EEEEEE-CSSSSEEEEEEEEETTEEEEE
T ss_pred ecCCEE-ecCCCcEEEEEEEeCCEEEEE
Confidence 344444 235778999999999987765
No 7
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}
Probab=6.58 E-value=1e+02 Score=22.93 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.5
Q ss_pred EeeecCcccceeeeeeccCCC
Q psy10453 104 KAVCDSRTGVKKLAIGHAIGD 124 (184)
Q Consensus 104 r~v~DS~TG~ekmaIgh~IGD 124 (184)
+.++|| .|+-++.|||-|..
T Consensus 60 ~~Y~Ds-~G~~TIG~GHli~~ 79 (216)
T d1k28a3 60 KVYWDT-EGYPTIGIGHLIMK 79 (216)
T ss_dssp EEEECS-SSCEEEETTEESCS
T ss_pred eeEECC-CCCceEEECceecC
Confidence 467888 59999999998864
No 8
>d1auua_ b.35.2.1 (A:) SacY {Bacillus subtilis [TaxId: 1423]}
Probab=6.30 E-value=1.1e+02 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.5
Q ss_pred ccceeeeeeccCCC
Q psy10453 111 TGVKKLAIGHAIGD 124 (184)
Q Consensus 111 TG~ekmaIgh~IGD 124 (184)
.|.|.+.+|++||=
T Consensus 17 ~~~E~Iv~GkGIGF 30 (55)
T d1auua_ 17 QNEEKILLGAGIAF 30 (55)
T ss_dssp SSSEEEEECTTSST
T ss_pred CCcEEEEEEcccee
Confidence 58899999999994
No 9
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.94 E-value=1.3e+02 Score=20.27 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=18.6
Q ss_pred EEEEeeecCcccceeeeeeccCCCceeeE
Q psy10453 101 ETKKAVCDSRTGVKKLAIGHAIGDKEHII 129 (184)
Q Consensus 101 ETrr~v~DS~TG~ekmaIgh~IGDR~HiI 129 (184)
+-++-+|-. . -+++||+|.|+.|=+.|
T Consensus 57 ~L~~PvCa~-~-g~rVaiSRri~~rWRLI 83 (90)
T d1s0ua2 57 KLKLPICAE-I-GDRVAISRRVGSRWRLI 83 (90)
T ss_dssp EEEEEEECC-T-TCEEEEEEECSSSEEEE
T ss_pred EecCCEECC-C-CCEEEEEEEeCCEEEEE
Confidence 334455532 2 36999999999997765
No 10
>d3ezma_ b.89.1.1 (A:) Cyanovirin-N {Cyanobacterium (Nostoc ellipsosporum) [TaxId: 45916]}
Probab=5.87 E-value=62 Score=21.49 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=17.5
Q ss_pred eEEEeecCCCcchhhhhhccccCCCCCchh
Q psy10453 128 IIEREQNLRSGEQEERQDFINLDEGIDNEE 157 (184)
Q Consensus 128 iIeR~rN~~tG~~Ee~Q~fiNLdE~~~~~E 157 (184)
+++-.-...+|... ..=|||+|.|.|.+
T Consensus 68 ~L~a~c~~~~g~~~--~s~inL~e~I~N~~ 95 (101)
T d3ezma_ 68 ELAAECKTRAQQFV--STKINLDDHIANID 95 (101)
T ss_dssp EEEEEEECTTSCEE--EEEEEGGGTEEEET
T ss_pred EEEEEEECCCCCEE--EeEEehHHceEeCC
Confidence 55555544566543 33389999887764
Done!