RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10453
         (184 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.0 bits (82), Expect = 0.005
 Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 21/88 (23%)

Query: 5   LMRFVDGDEDDILGAPAEARE----FIEVASDVMRERQFDLQGWEITGDPETEKPTSLLG 60
           L++++D    D+   P E        + + ++ +R+       W+               
Sbjct: 307 LLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWK--------------H 349

Query: 61  LLWNKVEDTLSVSIESLKEMQYQKVYQA 88
           +  +K+   +  S+  L+  +Y+K++  
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDR 377



 Score = 33.3 bits (75), Expect = 0.038
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 83  QKVYQATSSTRSAPGGIRET-------KKAVCDSRTGVKKLAIGHAIGDKEHIIER-EQN 134
           QK+ +  S+  +A G I  T       K  +CD+    ++L     +      + + E+N
Sbjct: 505 QKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL-----VNAILDFLPKIEEN 558

Query: 135 LRSGEQEERQDFINLDEGIDNEESEAFNQEWRQKAR 170
           L   +     D + +   +  E+   F +  +Q  R
Sbjct: 559 LICSKY---TDLLRI--ALMAEDEAIFEEAHKQVQR 589


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 28.9 bits (64), Expect = 0.85
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 26/53 (49%)

Query: 123 GDKEHIIEREQNLRSGEQ---------EERQDFINLDEGIDNEESEAFNQEWR 166
                I+ER      G+           ++     +D             EWR
Sbjct: 29  VYPPKIVERF---SEGDVVCALCGLVLSDK----LVDTR----------SEWR 64


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.8 bits (61), Expect = 1.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 14/49 (28%)

Query: 124 DKEHIIE-REQNLRSGEQEERQDFINLDEGIDNEESEAFNQEWRQKARE 171
           + E I + RE      EQ +R       + +D   S+   QEWR+KA++
Sbjct: 83  EPESIRKWRE------EQRKRL------QELD-AASKVMEQEWREKAKK 118


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 3.3
 Identities = 9/85 (10%), Positives = 30/85 (35%), Gaps = 18/85 (21%)

Query: 9    VDGDEDDIL----GAPAEAREFIEVASDVMRERQFDLQGWE--ITGDPET-EKPTSLLGL 61
                ++ +              +E+         ++++  +    GD    +  T++L  
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIV-------NYNVENQQYVAAGDLRALDTVTNVLNF 1871

Query: 62   LWNK----VEDTLSVSIESLKEMQY 82
            +  +    +E   S+S+E ++   +
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEGHLF 1896


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0772    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,804,031
Number of extensions: 158387
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 18
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.5 bits)