BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10455
         (99 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila
            melanogaster GN=Mi-2 PE=1 SV=2
          Length = 1982

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
            MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 1846 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 1900



 Score = 33.5 bits (75), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 63  RKKGSMGKKAGASTSKVPTLKIK-LGKRKQASS 94
           RK+   GKK    + KVPTLKIK LGKRK+ SS
Sbjct: 253 RKRSGRGKKGRRPSGKVPTLKIKLLGKRKRDSS 285


>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4
            PE=1 SV=2
          Length = 1912

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 2/48 (4%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDD 46
            M+LN RF EVECLAESHQHLSKES+AGNKPANAVLHKV+   EE+L D
Sbjct: 1816 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSD 1863


>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4
            PE=1 SV=1
          Length = 1915

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 2/48 (4%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDD 46
            M+LN RF EVECLAESHQHLSKES+AGNKPANAVLHKV+   EE+L D
Sbjct: 1819 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSD 1866


>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
            PE=1 SV=3
          Length = 2000

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 44/55 (80%), Gaps = 2/55 (3%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
            M+L+ARF E ECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 1827 MALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTR 1881


>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5
            PE=2 SV=1
          Length = 1954

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/55 (74%), Positives = 44/55 (80%), Gaps = 2/55 (3%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
            M+LNAR  EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 1823 MALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTR 1877


>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
          Length = 1829

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 3    LNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVAE--EVLDD 46
            L  RF ++E +AES  +++KES AGN+ ANAVLHK + +  E+L D
Sbjct: 1620 LAQRFADLENIAESQANIAKESSAGNRNANAVLHKTLVQLDEILSD 1665


>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis
            elegans GN=chd-3 PE=2 SV=2
          Length = 1787

 Score = 38.1 bits (87), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 3    LNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVAEEVLDD 46
            L   F E+E  A++H ++++ES  GN+ ANA+LHK +A+  LDD
Sbjct: 1609 LAQHFSELEHTADAHVNIARESNNGNRNANAILHKCLAQ--LDD 1650


>sp|P27091|60A_DROME Protein 60A OS=Drosophila melanogaster GN=gbb PE=1 SV=1
          Length = 455

 Score = 37.4 bits (85), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 13  LAESHQHLSKESLAGNKPANAVL----HKVVAEEVLDDEDEDDDRSK-RRSR 59
           +AE   HLS   L+  K A   L    H++ AEE L D+DEDDD  +  RSR
Sbjct: 74  IAERPTHLSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERGHRSR 125


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.125    0.333 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,561,756
Number of Sequences: 539616
Number of extensions: 1387527
Number of successful extensions: 7828
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 7664
Number of HSP's gapped (non-prelim): 180
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)