Query psy10455
Match_columns 99
No_of_seqs 31 out of 33
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 18:39:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ezd_A High mobility group pro 27.6 42 0.0014 18.3 2.1 10 58-67 5-14 (26)
2 4af3_D Incenp, inner centromer 16.5 36 0.0012 21.4 0.4 7 89-95 57-63 (71)
3 1jm0_A Protein (four-helix bun 15.2 35 0.0012 20.0 0.1 21 37-57 27-47 (50)
4 4gf0_A Glutathione S-transfera 12.6 73 0.0025 21.1 1.1 12 74-85 49-60 (215)
5 4alg_A Bromodomain-containing 10.4 1.3E+02 0.0046 20.5 1.9 24 40-63 127-150 (154)
6 1zl9_A GST class-sigma, glutat 9.8 1.2E+02 0.0043 19.6 1.5 11 74-84 48-58 (207)
7 2l8s_A Integrin alpha-1; trans 8.9 75 0.0026 19.6 0.1 11 88-98 37-47 (54)
8 2ixo_A Serine/threonine-protei 8.4 1.6E+02 0.0056 23.4 1.9 41 7-47 74-120 (323)
9 2dsa_A Glutathione S-transfera 8.0 1.5E+02 0.0052 19.1 1.3 11 74-84 47-57 (203)
10 2pvq_A Glutathione S-transfera 7.9 1.7E+02 0.0058 18.9 1.5 11 74-84 47-57 (201)
No 1
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=27.63 E-value=42 Score=18.28 Aligned_cols=10 Identities=60% Similarity=0.830 Sum_probs=6.4
Q ss_pred cCCCCCCCCC
Q psy10455 58 SRGGGRKKGS 67 (99)
Q Consensus 58 ~~~~~r~k~~ 67 (99)
.+-+||+|++
T Consensus 5 KrpRgRpkGS 14 (26)
T 2ezd_A 5 KRPRGRPKGS 14 (26)
T ss_dssp CCCSSCCTTC
T ss_pred cCCCCCcCcc
Confidence 3456677776
No 2
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=16.54 E-value=36 Score=21.37 Aligned_cols=7 Identities=43% Similarity=0.453 Sum_probs=0.0
Q ss_pred cccCCcc
Q psy10455 89 RKQASSI 95 (99)
Q Consensus 89 rkr~ss~ 95 (99)
+||+||-
T Consensus 57 ~kRtSSA 63 (71)
T 4af3_D 57 HKRTSSA 63 (71)
T ss_dssp -------
T ss_pred ccCCCcc
Confidence 5677773
No 3
>1jm0_A Protein (four-helix bundle model); alpha-helical bundle, protein design, de novo protein; 1.70A {Synthetic} SCOP: k.8.1.1 PDB: 1jmb_A 1ovu_A 1ovv_A 1lt1_A 1ec5_A 1nvo_A 1ovr_A 2kik_A 1u7j_A 1y47_A 1mft_A 1u7m_A
Probab=15.24 E-value=35 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHHHHhhhcccccchhhhhcc
Q psy10455 37 KVVAEEVLDDEDEDDDRSKRR 57 (99)
Q Consensus 37 KvLlEeLLdDEKdDvdRlps~ 57 (99)
+-|++++|.||++-.+.+.+.
T Consensus 27 r~lle~iL~dEEeH~dwLetq 47 (50)
T 1jm0_A 27 LPVLAKILEDEEKHIEWLETI 47 (50)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345999999998888777654
No 4
>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}
Probab=12.63 E-value=73 Score=21.06 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=9.1
Q ss_pred CCCCCCCceeee
Q psy10455 74 ASTSKVPTLKIK 85 (99)
Q Consensus 74 ~~~~kvptlkik 85 (99)
-|.++||+|.+-
T Consensus 49 nP~g~vP~L~~d 60 (215)
T 4gf0_A 49 NPKGRVPALRLE 60 (215)
T ss_dssp CTTCCSCEEECT
T ss_pred CCCCCcceEEec
Confidence 357889999763
No 5
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=10.43 E-value=1.3e+02 Score=20.51 Aligned_cols=24 Identities=0% Similarity=-0.078 Sum_probs=10.8
Q ss_pred HHhhhcccccchhhhhcccCCCCC
Q psy10455 40 AEEVLDDEDEDDDRSKRRSRGGGR 63 (99)
Q Consensus 40 lEeLLdDEKdDvdRlps~~~~~~r 63 (99)
.+..+.++.++..+.+....++.+
T Consensus 127 f~~~~~~l~~~~~e~~~~~~k~k~ 150 (154)
T 4alg_A 127 FLQKVASMPQEEQELVVTIPKNSH 150 (154)
T ss_dssp HHHHHTTSCSSCCBCCC-------
T ss_pred HHHHHHHCCchhccccCCCCCcCC
Confidence 677777775555555544444433
No 6
>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}
Probab=9.84 E-value=1.2e+02 Score=19.60 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=8.8
Q ss_pred CCCCCCCceee
Q psy10455 74 ASTSKVPTLKI 84 (99)
Q Consensus 74 ~~~~kvptlki 84 (99)
.|.++||+|.+
T Consensus 48 ~P~g~vP~L~~ 58 (207)
T 1zl9_A 48 APFGQLPFLEV 58 (207)
T ss_dssp STTSCSCEEEE
T ss_pred CCCCCCCEEEE
Confidence 45789999975
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=8.86 E-value=75 Score=19.57 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=7.7
Q ss_pred ccccCCccccc
Q psy10455 88 KRKQASSITDL 98 (99)
Q Consensus 88 krkr~ss~~~~ 98 (99)
||++....+||
T Consensus 37 KR~~~~~~~~~ 47 (54)
T 2l8s_A 37 KRPLKKKMEKL 47 (54)
T ss_dssp TSCCSCCCCC-
T ss_pred cCCCcchhhHH
Confidence 88887777765
No 8
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A*
Probab=8.40 E-value=1.6e+02 Score=23.45 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=27.4
Q ss_pred cchhhhhhhhcchhhhhhhcCCCCchhhhHHHH------HHhhhccc
Q psy10455 7 FGEVECLAESHQHLSKESLAGNKPANAVLHKVV------AEEVLDDE 47 (99)
Q Consensus 7 FaelEclA~sh~~l~kes~aGnk~an~vLhKvL------lEeLLdDE 47 (99)
|..+|.+.+.+-.+..-++-||++-..-..++- ++++|++.
T Consensus 74 L~~l~~~ide~PP~~~p~RFGN~AfR~w~~~l~~~~~~ll~~~l~~~ 120 (323)
T 2ixo_A 74 LDKLAHLIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSE 120 (323)
T ss_dssp HHHHHHTTTTSCCCCC---CCCSHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHhCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 456778888887776556779998888777775 56666544
No 9
>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A*
Probab=8.00 E-value=1.5e+02 Score=19.13 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.9
Q ss_pred CCCCCCCceee
Q psy10455 74 ASTSKVPTLKI 84 (99)
Q Consensus 74 ~~~~kvptlki 84 (99)
.|.++||+|.+
T Consensus 47 ~P~g~vP~L~~ 57 (203)
T 2dsa_A 47 NPAGYVPCLQL 57 (203)
T ss_dssp CTTCCSCEEEC
T ss_pred CCCCCCCEEEe
Confidence 45789999986
No 10
>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*
Probab=7.92 E-value=1.7e+02 Score=18.85 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=8.9
Q ss_pred CCCCCCCceee
Q psy10455 74 ASTSKVPTLKI 84 (99)
Q Consensus 74 ~~~~kvptlki 84 (99)
.|.++||+|.+
T Consensus 47 ~P~g~vP~L~~ 57 (201)
T 2pvq_A 47 NPRGAVPALEV 57 (201)
T ss_dssp CTTCCSCEEEE
T ss_pred CcCCCCCEEEe
Confidence 45789999985
Done!