RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10455
(99 letters)
>gnl|CDD|219716 pfam08074, CHDCT2, CHDCT2 (NUC038) domain. The CHDCT2 C-terminal
domain is found in PHD/RING finger and chromo
domain-associated CHD-like helicases.
Length = 174
Score = 79.5 bits (196), Expect = 3e-20
Identities = 38/55 (69%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVA--EEVLDDEDEDDDR 53
M+LNARF E+ECLAESHQHLSKESLAGN+ ANAVLHKV+ +E+L D D +R
Sbjct: 94 MALNARFAELECLAESHQHLSKESLAGNRNANAVLHKVLNQLDELLSDMKADVNR 148
>gnl|CDD|219406 pfam07420, DUF1509, Protein of unknown function (DUF1509). This
family consists of several uncharacterized viral
proteins from the Marek's disease-like viruses. Members
of this family are typically around 400 residues in
length. The function of this family is unknown.
Length = 377
Score = 28.8 bits (64), Expect = 0.39
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 34 VLHKVVAEEVLDDEDEDDDRSKRRSRGGGRKKGSMGKKAGASTSKVPTLKIKLGKRKQAS 93
H E + + RS+ RSR G R+ + G+R ++
Sbjct: 317 PPHSTSGERRGRRRNRSESRSRSRSRSGSRRYRR------------RRGRGVPGRRSESR 364
Query: 94 SITDLV 99
T LV
Sbjct: 365 QDTVLV 370
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 26.6 bits (58), Expect = 2.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 40 AEEVLDDEDEDDDRSKRRSRGGGRKKGSMGKKAGASTSKVPT 81
+EE DD +E+D++S G G KK G + ++ T
Sbjct: 116 SEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSSGSTTSGT 157
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional.
Length = 436
Score = 26.3 bits (58), Expect = 3.1
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 45 DDEDEDDDRSKR-RSRGGGRKKGSMGKKAGASTSKV 79
D +DED+ GGGR GS K+ ++ ++
Sbjct: 391 DIDDEDEKNQYELSDEGGGRAAGSTAKRHSTNSHRL 426
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 25.8 bits (57), Expect = 3.5
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 52 DRSKRRSRGGGRKKGSMGKKAGASTSKV 79
R R RG G G G G KV
Sbjct: 30 GRGGGRGRGRGGGGGGRGGGGGGGPGKV 57
>gnl|CDD|236779 PRK10864, PRK10864, putative methyltransferase; Provisional.
Length = 346
Score = 25.9 bits (57), Expect = 4.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 45 DDEDEDDDRSKRRSRGGGRKKGS 67
DD+ + + R +GGGR G
Sbjct: 20 DDDSDKRTHNPRTGKGGGRPSGK 42
>gnl|CDD|183870 PRK13145, araD, L-ribulose-5-phosphate 4-epimerase; Provisional.
Length = 234
Score = 25.6 bits (56), Expect = 4.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 27 GNKPANAVLHKVVAEEV 43
G P AV H VV EEV
Sbjct: 177 GKNPEQAVYHSVVLEEV 193
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 25.2 bits (56), Expect = 6.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 20 LSKESLAGNKPANAV--LHKVV--AEEVLDDEDEDDDRSKRR 57
LS E+ AG P AV + ++ AE+ L D R
Sbjct: 314 LSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPP 355
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that
may be functionally important. TIP is involved in
enamel assembly by interacting with one of the major
proteins responsible for biomineralisation of enamel -
tuftelin.
Length = 106
Score = 24.6 bits (54), Expect = 6.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 45 DDEDEDDDRSKRRSRGGGRKK 65
DD+D++ +R + R R +KK
Sbjct: 42 DDDDDEGERRRGRGRRRSKKK 62
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 25.1 bits (55), Expect = 7.2
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 30 PANAV------LHKVVAEEVLDDEDEDDDRSKRRSRGGGRKKGSMGKKAGASTSKVPTLK 83
PANA L V E EDE ++ R G K +T VP L+
Sbjct: 232 PANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALE 291
Query: 84 IKLG 87
K G
Sbjct: 292 AKWG 295
>gnl|CDD|214375 CHL00147, rpl4, ribosomal protein L4; Validated.
Length = 215
Score = 25.0 bits (55), Expect = 8.0
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
Query: 54 SKRRS--RGGGRK----KGSMGKKAGASTS 77
+K RS RGGGRK KG+ +AG++ S
Sbjct: 56 TKTRSEVRGGGRKPWKQKGTGRARAGSNRS 85
>gnl|CDD|233046 TIGR00603, rad25, DNA repair helicase rad25. All proteins in this
family for which functions are known are DNA-DNA
helicases used for the initiation of nucleotide excision
repair and transacription as part of the TFIIH
complex.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 732
Score = 25.1 bits (55), Expect = 8.9
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 14 AESHQHLSKESLAGNKPANAVLHKVVAEEVLDDEDEDDDRSKRRSR-----GGGRKKGSM 68
E + L K LAG+ A EVL+ E RS R+ GS+
Sbjct: 649 EEQLELLQKVLLAGDLDAE--------LEVLEGEFGSRALGASRSMSSASGKAVRRGGSL 700
Query: 69 GKKAGA 74
+G
Sbjct: 701 SSLSGG 706
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.125 0.333
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,739,064
Number of extensions: 395881
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 52
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.2 bits)