BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10457
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V33|A Chain A, Crystal Structure Of Mcpip1 Conserved Domain With
Zinc-Finger Motif
pdb|3V33|B Chain B, Crystal Structure Of Mcpip1 Conserved Domain With
Zinc-Finger Motif
Length = 223
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/206 (63%), Positives = 163/206 (79%), Gaps = 9/206 (4%)
Query: 112 AKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNL 171
+ LRPVVIDGSNVAMSHGNKE+FSC GI + V+WF RGH +ITVFVP WRKE RPD
Sbjct: 22 SDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVP 81
Query: 172 IKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231
I +Q +L ELEK +ILV+TPSR +GGKR+VCYDDRFI++LA ++DGIVVSND YRDL E
Sbjct: 82 ITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE 141
Query: 232 SPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKF-----LTIDYKQNSTGAPCPY 286
++++ +E+R+LMYSFVND+FMPP+DPLGR GPSLD F LT+++++ PCPY
Sbjct: 142 RQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLTLEHRKQ----PCPY 197
Query: 287 GRKCTYGSKCKFNHPERGPWPHKTVT 312
GRKCTYG KC+F HPER P ++V
Sbjct: 198 GRKCTYGIKCRFFHPERPSCPQRSVA 223
>pdb|3V32|B Chain B, Crystal Structure Of Mcpip1 N-Terminal Conserved Domain
pdb|3V32|A Chain A, Crystal Structure Of Mcpip1 N-Terminal Conserved Domain
pdb|3V34|A Chain A, Crystal Structure Of Mcpip1 Conserved Domain With
Magnesium Ion In The Catalytic Center
pdb|3V34|B Chain B, Crystal Structure Of Mcpip1 Conserved Domain With
Magnesium Ion In The Catalytic Center
Length = 185
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 134/160 (83%)
Query: 112 AKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNL 171
+ LRPVVIDGSNVAMSHGNKE+FSC GI + V+WF RGH +ITVFVP WRKE RPD
Sbjct: 22 SDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVP 81
Query: 172 IKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231
I +Q +L ELEK +ILV+TPSR +GGKR+VCYDDRFI++LA ++DGIVVSND YRDL E
Sbjct: 82 ITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE 141
Query: 232 SPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFL 271
++++ +E+R+LMYSFVND+FMPP+DPLGR GPSLD FL
Sbjct: 142 RQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFL 181
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 181 LEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVE 240
+E R+ TP+ + G K LV + LA G +V+N+++RDL L + F VE
Sbjct: 275 MENPRLSFITPTVVAGDKSLV---NLIAHELAHSWSGNLVTNESWRDLWL-NEGFTSYVE 330
Query: 241 DRILMYSFVNDR 252
+RI+ F DR
Sbjct: 331 NRIMEAVFGTDR 342
>pdb|2O4V|A Chain A, An Arginine Ladder In Oprp Mediates Phosphate Specific
Transfer Across The Outer Membrane
pdb|2O4V|B Chain B, An Arginine Ladder In Oprp Mediates Phosphate Specific
Transfer Across The Outer Membrane
pdb|2O4V|C Chain C, An Arginine Ladder In Oprp Mediates Phosphate Specific
Transfer Across The Outer Membrane
Length = 411
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 85 AELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFS 135
++ LG Q ++D+ D P+ +R V +G N A S+GN+ LF
Sbjct: 196 GNVVHLGLQYAYRDLEDSAVDTRIRPRMGMRGVSTNGGNDAGSNGNRGLFG 246
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 114 LRPVVIDGSNVAMSHGNKELFSC--IGIKICVDWFRARGHKEITVFVPKWRKESCRPDNL 171
L V I S V +S G + F+C IG +DW+ +G K I+ +KE R
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 172 IKNQEV 177
I N +
Sbjct: 64 IYNANI 69
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 117 VVIDGSNVAMSHGNKELFSC--IGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKN 174
V I S V +S G + F+C IG +DW+ +G K I+ +KE R I N
Sbjct: 3 VTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYN 62
Query: 175 QEV 177
+
Sbjct: 63 ANI 65
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 114 LRPVVIDGSNVAMSHGNKELFSC--IGIKICVDWFRARGHKEITVFVPKWRKESCRPDNL 171
L V I S V +S G + F+C IG +DW+ +G K I+ +KE R
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 172 IKNQEV 177
I N +
Sbjct: 62 IYNANI 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,311,100
Number of Sequences: 62578
Number of extensions: 616341
Number of successful extensions: 1148
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 9
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)