Query psy10457
Match_columns 508
No_of_seqs 186 out of 296
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 18:41:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3777|consensus 100.0 7.3E-59 1.6E-63 484.0 5.7 374 109-507 7-395 (443)
2 PF11977 RNase_Zc3h12a: Zc3h12 100.0 1.1E-45 2.4E-50 336.9 10.5 155 113-269 1-155 (155)
3 PF14626 RNase_Zc3h12a_2: Zc3h 98.5 5.5E-07 1.2E-11 81.4 7.7 110 132-250 5-116 (122)
4 PF05991 NYN_YacP: YacP-like N 96.9 0.00088 1.9E-08 62.9 4.1 91 117-225 1-105 (166)
5 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0051 1.1E-07 39.3 1.7 19 283-301 1-19 (19)
6 cd00008 53EXOc 5'-3' exonuclea 92.4 0.83 1.8E-05 45.3 9.3 102 115-224 2-134 (240)
7 smart00475 53EXOc 5'-3' exonuc 91.5 0.93 2E-05 45.8 8.7 102 115-224 2-133 (259)
8 PF07499 RuvA_C: RuvA, C-termi 91.3 0.43 9.4E-06 36.3 4.7 36 54-89 7-44 (47)
9 PRK14976 5'-3' exonuclease; Pr 90.9 1.6 3.4E-05 44.7 9.8 101 115-224 4-139 (281)
10 KOG3740|consensus 90.8 0.028 6E-07 62.9 -3.0 85 109-212 622-706 (706)
11 PF00642 zf-CCCH: Zinc finger 88.5 0.18 3.9E-06 34.4 0.6 15 288-302 13-27 (27)
12 COG3688 Predicted RNA-binding 88.3 0.52 1.1E-05 45.5 3.7 97 114-229 3-114 (173)
13 PF09288 UBA_3: Fungal ubiquit 81.7 2.1 4.5E-05 34.7 3.7 38 52-89 11-55 (55)
14 PRK09482 flap endonuclease-lik 80.0 11 0.00025 38.4 9.3 106 115-230 4-137 (256)
15 PRK05755 DNA polymerase I; Pro 78.9 8.6 0.00019 45.0 9.1 100 115-224 3-135 (880)
16 PHA02567 rnh RnaseH; Provision 78.3 13 0.00029 39.0 9.3 102 114-224 14-156 (304)
17 PF02739 5_3_exonuc_N: 5'-3' e 76.6 7.6 0.00016 36.9 6.5 105 115-230 2-139 (169)
18 COG4956 Integral membrane prot 75.9 7.6 0.00017 41.3 6.8 76 146-225 178-265 (356)
19 COG1569 Predicted nucleic acid 75.4 5.9 0.00013 37.5 5.3 55 177-235 66-122 (142)
20 smart00356 ZnF_C3H1 zinc finge 74.5 2.3 5E-05 27.8 1.8 21 282-302 5-27 (27)
21 PRK13764 ATPase; Provisional 74.2 9.1 0.0002 43.5 7.4 55 203-275 90-144 (602)
22 PF12813 XPG_I_2: XPG domain c 73.5 4.4 9.5E-05 40.8 4.3 22 203-224 29-50 (246)
23 TIGR00305 probable toxin-antit 72.2 8.9 0.00019 33.2 5.4 28 200-229 84-112 (114)
24 KOG1677|consensus 71.1 2.2 4.7E-05 43.5 1.5 23 281-303 177-202 (332)
25 cd00194 UBA Ubiquitin Associat 70.6 13 0.00028 26.3 5.0 35 51-87 2-36 (38)
26 KOG3777|consensus 70.3 0.79 1.7E-05 50.1 -1.9 37 116-164 397-433 (443)
27 PRK00116 ruvA Holliday junctio 69.8 7.4 0.00016 37.6 4.7 41 50-90 149-190 (192)
28 PRK14605 ruvA Holliday junctio 68.4 8.6 0.00019 37.5 4.9 39 51-89 149-189 (194)
29 PHA00439 exonuclease 67.2 50 0.0011 34.6 10.3 108 113-230 5-151 (286)
30 cd00128 XPG Xeroderma pigmento 64.8 30 0.00064 35.5 8.2 101 115-224 25-172 (316)
31 cd08784 Death_DRs Death Domain 64.1 12 0.00026 31.4 4.3 41 53-93 14-72 (79)
32 PRK14600 ruvA Holliday junctio 62.8 13 0.00028 36.2 4.9 38 52-89 147-184 (186)
33 TIGR03674 fen_arch flap struct 61.0 41 0.00088 35.4 8.5 45 114-158 21-80 (338)
34 COG1167 ARO8 Transcriptional r 60.5 44 0.00096 36.2 9.0 71 174-244 214-292 (459)
35 PTZ00217 flap endonuclease-1; 59.7 43 0.00094 36.1 8.6 102 114-224 28-182 (393)
36 smart00670 PINc Large family o 59.4 9.6 0.00021 31.8 3.0 23 202-224 84-107 (111)
37 cd08315 Death_TRAILR_DR4_DR5 D 59.4 17 0.00037 31.8 4.6 41 53-93 22-80 (96)
38 smart00165 UBA Ubiquitin assoc 59.1 22 0.00048 25.0 4.4 32 51-84 2-33 (37)
39 cd06167 LabA_like LabA_like pr 56.5 58 0.0013 28.9 7.7 101 116-230 4-114 (149)
40 PF04760 IF2_N: Translation in 55.2 5.1 0.00011 30.9 0.6 31 54-84 7-39 (54)
41 TIGR00593 pola DNA polymerase 54.7 59 0.0013 38.7 9.3 100 116-224 1-133 (887)
42 PF04695 Pex14_N: Peroxisomal 54.7 13 0.00028 34.2 3.2 30 50-79 23-52 (136)
43 PF10283 zf-CCHH: Zinc-finger 54.4 3 6.5E-05 29.1 -0.7 19 283-301 2-23 (26)
44 TIGR00028 Mtu_PIN_fam Mycobact 54.1 14 0.0003 32.0 3.2 24 201-224 103-126 (142)
45 PRK07366 succinyldiaminopimela 53.2 46 0.00099 34.2 7.3 48 184-231 166-213 (388)
46 cd08316 Death_FAS_TNFRSF6 Deat 52.7 27 0.00058 30.9 4.7 40 53-92 23-81 (97)
47 cd08803 Death_ank3 Death domai 52.0 27 0.00058 30.0 4.5 38 55-92 20-76 (84)
48 COG1609 PurR Transcriptional r 51.9 34 0.00073 35.3 6.1 110 113-227 137-250 (333)
49 cd08318 Death_NMPP84 Death dom 51.7 31 0.00066 29.4 4.8 38 54-91 22-77 (86)
50 cd08313 Death_TNFR1 Death doma 51.4 30 0.00064 29.7 4.7 39 53-91 14-71 (80)
51 TIGR00084 ruvA Holliday juncti 51.4 25 0.00054 34.2 4.8 39 51-89 148-188 (191)
52 PF12244 DUF3606: Protein of u 50.6 26 0.00055 28.1 3.9 36 51-88 21-56 (57)
53 cd08804 Death_ank2 Death domai 50.3 32 0.00069 29.3 4.7 38 54-91 19-75 (84)
54 cd08306 Death_FADD Fas-associa 50.1 29 0.00063 29.6 4.5 19 54-72 17-35 (86)
55 PLN02187 rooty/superroot1 50.1 59 0.0013 35.1 7.8 125 119-251 129-277 (462)
56 PRK14603 ruvA Holliday junctio 49.4 31 0.00068 33.8 5.1 39 51-89 153-194 (197)
57 PRK15481 transcriptional regul 49.1 84 0.0018 33.0 8.6 101 123-230 143-260 (431)
58 PF13470 PIN_3: PIN domain 49.1 18 0.0004 30.9 3.2 25 200-224 93-118 (119)
59 PRK14606 ruvA Holliday junctio 49.0 28 0.00062 33.9 4.8 39 51-89 144-183 (188)
60 COG1412 Uncharacterized protei 47.0 15 0.00032 34.5 2.4 40 202-250 84-124 (136)
61 PF00627 UBA: UBA/TS-N domain; 46.5 34 0.00073 24.5 3.7 28 50-77 2-29 (37)
62 PF06357 Omega-toxin: Omega-at 46.1 7.4 0.00016 29.1 0.2 26 281-307 8-33 (37)
63 PF10440 WIYLD: Ubiquitin-bind 45.6 24 0.00052 29.5 3.1 29 48-76 9-37 (65)
64 PF13377 Peripla_BP_3: Peripla 45.4 36 0.00077 29.7 4.4 16 143-158 1-16 (160)
65 PRK14602 ruvA Holliday junctio 45.3 39 0.00085 33.3 5.1 39 52-90 157-198 (203)
66 PRK06290 aspartate aminotransf 43.2 78 0.0017 33.5 7.3 107 119-231 103-227 (410)
67 PRK14601 ruvA Holliday junctio 43.1 40 0.00086 32.9 4.8 38 51-89 143-180 (183)
68 PRK08960 hypothetical protein; 43.1 79 0.0017 32.6 7.2 104 120-230 91-212 (387)
69 PRK08354 putative aminotransfe 43.1 82 0.0018 31.6 7.1 90 138-231 66-165 (311)
70 PLN02231 alanine transaminase 42.8 81 0.0018 35.1 7.7 105 119-230 189-318 (534)
71 PF00532 Peripla_BP_1: Peripla 42.7 37 0.00081 33.8 4.7 84 135-227 102-193 (279)
72 COG0632 RuvA Holliday junction 42.2 39 0.00084 33.6 4.6 36 54-89 160-198 (201)
73 cd01670 Death Death Domain: a 42.0 53 0.0011 26.2 4.6 21 54-74 14-34 (79)
74 PRK07324 transaminase; Validat 41.8 83 0.0018 32.6 7.1 57 174-231 142-201 (373)
75 PF13344 Hydrolase_6: Haloacid 41.2 79 0.0017 27.3 5.9 93 117-230 1-96 (101)
76 PRK06348 aspartate aminotransf 40.9 1E+02 0.0022 31.9 7.5 106 119-231 87-210 (384)
77 PRK08636 aspartate aminotransf 40.3 74 0.0016 33.1 6.5 106 119-231 92-223 (403)
78 COG2454 Uncharacterized conser 40.3 1.2E+02 0.0027 30.6 7.6 48 112-159 64-136 (211)
79 PF00531 Death: Death domain; 39.5 62 0.0014 25.9 4.7 38 54-91 16-71 (83)
80 PF01927 Mut7-C: Mut7-C RNAse 39.4 50 0.0011 30.5 4.6 21 204-224 30-50 (147)
81 COG0462 PrsA Phosphoribosylpyr 39.0 2.5E+02 0.0054 30.0 10.1 90 135-224 67-172 (314)
82 PF14367 DUF4411: Domain of un 39.0 24 0.00053 33.1 2.5 24 202-225 103-126 (162)
83 PLN00145 tyrosine/nicotianamin 38.2 1E+02 0.0022 32.9 7.3 105 119-231 115-238 (430)
84 PRK05294 carB carbamoyl phosph 38.0 7.3E+02 0.016 30.2 14.9 97 54-159 485-596 (1066)
85 PLN02368 alanine transaminase 37.8 1.1E+02 0.0024 32.7 7.4 104 119-230 128-257 (407)
86 TIGR01264 tyr_amTase_E tyrosin 37.4 1.4E+02 0.0031 30.9 8.0 56 175-231 158-216 (401)
87 PRK10423 transcriptional repre 35.5 89 0.0019 30.7 5.9 22 136-157 159-180 (327)
88 TIGR02405 trehalos_R_Ecol treh 35.2 1.2E+02 0.0026 30.0 6.8 83 135-227 156-242 (311)
89 TIGR01369 CPSaseII_lrg carbamo 34.8 8.6E+02 0.019 29.6 14.9 95 54-158 484-595 (1050)
90 cd08317 Death_ank Death domain 34.3 83 0.0018 26.4 4.8 19 54-72 19-37 (84)
91 cd08815 Death_TNFRSF25_DR3 Dea 34.2 62 0.0013 28.0 4.0 41 52-92 13-69 (77)
92 PRK14604 ruvA Holliday junctio 34.2 66 0.0014 31.6 4.8 38 52-89 151-190 (195)
93 PRK09265 aminotransferase AlaT 33.6 1.3E+02 0.0028 31.3 7.1 106 119-231 93-216 (404)
94 cd08777 Death_RIP1 Death Domai 33.5 69 0.0015 27.5 4.2 19 54-72 17-35 (86)
95 PRK10339 DNA-binding transcrip 33.2 1.1E+02 0.0024 30.3 6.3 22 136-157 159-180 (327)
96 KOG1752|consensus 33.1 1.2E+02 0.0026 27.2 5.7 69 178-254 8-78 (104)
97 PF04056 Ssl1: Ssl1-like; Int 32.5 1.1E+02 0.0024 30.3 5.9 88 131-231 77-171 (193)
98 PLN02656 tyrosine transaminase 32.3 1.8E+02 0.0038 30.6 7.8 57 174-231 158-217 (409)
99 PRK14807 histidinol-phosphate 32.1 2.2E+02 0.0047 29.0 8.3 42 185-229 150-191 (351)
100 PRK03317 histidinol-phosphate 32.0 2.3E+02 0.0049 29.0 8.4 103 119-230 86-204 (368)
101 cd03034 ArsC_ArsC Arsenate Red 31.9 1E+02 0.0022 27.1 5.2 64 57-126 31-102 (112)
102 PRK11041 DNA-binding transcrip 31.8 1E+02 0.0022 30.0 5.6 86 135-227 136-226 (309)
103 PTZ00377 alanine aminotransfer 31.7 1.3E+02 0.0028 32.5 6.9 105 119-230 136-265 (481)
104 PRK14987 gluconate operon tran 31.6 1.7E+02 0.0037 29.0 7.3 84 135-227 164-252 (331)
105 PF11588 DUF3243: Protein of u 31.6 16 0.00034 31.8 0.0 43 51-93 15-65 (81)
106 PTZ00433 tyrosine aminotransfe 31.5 1.4E+02 0.003 31.3 6.9 56 175-231 167-225 (412)
107 TIGR03699 mena_SCO4550 menaqui 31.5 2.4E+02 0.0053 29.0 8.6 101 174-275 142-260 (340)
108 PF04900 Fcf1: Fcf1; InterPro 31.4 58 0.0013 28.0 3.5 39 202-249 51-91 (101)
109 PF01320 Colicin_Pyocin: Colic 31.4 1E+02 0.0023 26.9 5.0 64 61-149 9-77 (85)
110 PF02639 DUF188: Uncharacteriz 31.2 95 0.0021 28.8 5.0 22 202-224 39-60 (130)
111 PRK10727 DNA-binding transcrip 31.1 1.1E+02 0.0025 30.5 6.0 23 135-157 160-182 (343)
112 PF02536 mTERF: mTERF; InterP 31.0 44 0.00095 33.9 3.1 26 49-74 242-267 (345)
113 PRK06108 aspartate aminotransf 30.8 1.5E+02 0.0032 30.2 6.8 57 174-231 147-206 (382)
114 PRK06836 aspartate aminotransf 30.1 1.9E+02 0.0041 30.0 7.6 58 174-231 157-222 (394)
115 cd06287 PBP1_LacI_like_8 Ligan 30.0 1.2E+02 0.0026 29.4 5.8 23 135-157 102-124 (269)
116 TIGR03538 DapC_gpp succinyldia 29.6 2.4E+02 0.0053 29.1 8.2 47 184-231 166-213 (393)
117 TIGR01265 tyr_nico_aTase tyros 29.4 1.7E+02 0.0037 30.5 7.1 57 174-231 158-217 (403)
118 PRK09492 treR trehalose repres 29.3 1.7E+02 0.0037 28.6 6.8 82 135-226 159-244 (315)
119 KOG1015|consensus 28.8 54 0.0012 40.0 3.6 95 125-232 702-802 (1567)
120 PRK11303 DNA-binding transcrip 28.8 1.4E+02 0.0031 29.3 6.1 79 135-225 163-249 (328)
121 PRK06425 histidinol-phosphate 28.4 1.6E+02 0.0034 29.9 6.5 68 183-251 122-194 (332)
122 PRK08363 alanine aminotransfer 28.3 1.4E+02 0.003 31.0 6.2 25 207-231 190-214 (398)
123 PLN02450 1-aminocyclopropane-1 28.3 2.2E+02 0.0048 30.9 7.9 47 185-232 193-240 (468)
124 COG1023 Gnd Predicted 6-phosph 28.1 1.2E+02 0.0026 31.9 5.5 88 141-237 14-110 (300)
125 PRK06207 aspartate aminotransf 27.6 2E+02 0.0044 30.2 7.3 56 174-230 167-225 (405)
126 PRK10401 DNA-binding transcrip 27.4 1.5E+02 0.0033 29.6 6.2 24 135-158 160-183 (346)
127 cd03035 ArsC_Yffb Arsenate Red 26.4 1.3E+02 0.0027 26.5 4.7 19 57-75 31-49 (105)
128 PRK09148 aminotransferase; Val 26.4 1.5E+02 0.0032 31.1 6.0 46 184-230 166-212 (405)
129 PRK09526 lacI lac repressor; R 26.4 1.8E+02 0.0038 28.9 6.3 24 135-158 165-188 (342)
130 PF01850 PIN: PIN domain; Int 26.2 47 0.001 27.5 2.0 23 202-224 90-113 (121)
131 PRK10014 DNA-binding transcrip 26.1 1.6E+02 0.0034 29.2 6.0 23 135-157 166-188 (342)
132 PRK12815 carB carbamoyl phosph 25.9 3.3E+02 0.0071 33.2 9.5 97 54-159 485-597 (1068)
133 PRK08068 transaminase; Reviewe 25.9 2.2E+02 0.0047 29.5 7.1 48 183-231 167-215 (389)
134 TIGR00014 arsC arsenate reduct 25.6 1.5E+02 0.0033 26.2 5.1 21 57-77 31-51 (114)
135 PRK14828 undecaprenyl pyrophos 25.4 1.3E+02 0.0027 31.0 5.2 23 136-158 57-79 (256)
136 PLN00143 tyrosine/nicotianamin 25.4 1.9E+02 0.0042 30.3 6.7 93 136-231 107-218 (409)
137 COG1487 VapC Predicted nucleic 25.4 1.2E+02 0.0026 26.9 4.5 36 176-224 81-116 (133)
138 PRK05957 aspartate aminotransf 25.3 2.5E+02 0.0054 29.1 7.4 58 174-231 149-208 (389)
139 PRK09147 succinyldiaminopimela 24.8 2.6E+02 0.0056 29.0 7.4 47 185-231 168-214 (396)
140 PF00752 XPG_N: XPG N-terminal 24.8 77 0.0017 26.9 3.0 44 115-158 27-80 (101)
141 TIGR01481 ccpA catabolite cont 24.5 1.9E+02 0.004 28.5 6.1 24 135-158 160-183 (329)
142 PRK09333 30S ribosomal protein 24.2 85 0.0019 30.1 3.5 51 174-237 98-148 (150)
143 TIGR03537 DapC succinyldiamino 24.0 3E+02 0.0065 28.0 7.6 57 174-231 125-184 (350)
144 PF05991 NYN_YacP: YacP-like N 23.9 1.5E+02 0.0033 28.0 5.1 31 201-231 99-129 (166)
145 PRK08361 aspartate aminotransf 23.8 2.5E+02 0.0054 29.0 7.1 45 185-230 168-213 (391)
146 PTZ00376 aspartate aminotransf 23.8 4.6E+02 0.01 27.4 9.1 92 138-231 112-224 (404)
147 COG0436 Aspartate/tyrosine/aro 23.7 1.9E+02 0.0042 30.8 6.4 130 118-254 85-240 (393)
148 PF13797 Post_transc_reg: Post 23.6 1.7E+02 0.0038 25.4 5.0 45 48-92 11-62 (87)
149 PRK07681 aspartate aminotransf 23.6 2.5E+02 0.0055 29.1 7.1 48 183-231 166-214 (399)
150 KOG2494|consensus 23.4 45 0.00097 35.7 1.6 9 296-304 87-95 (331)
151 PF01927 Mut7-C: Mut7-C RNAse 23.4 3.8E+02 0.0083 24.8 7.5 62 141-228 11-73 (147)
152 PRK06855 aminotransferase; Val 23.1 4.3E+02 0.0093 28.1 8.8 66 174-241 158-232 (433)
153 PRK13355 bifunctional HTH-doma 22.9 2E+02 0.0043 31.5 6.4 106 119-231 206-329 (517)
154 cd06286 PBP1_CcpB_like Ligand- 22.9 1.7E+02 0.0037 27.4 5.3 24 135-158 98-121 (260)
155 cd06290 PBP1_LacI_like_9 Ligan 22.7 2E+02 0.0043 27.1 5.6 25 135-159 99-123 (265)
156 cd07043 STAS_anti-anti-sigma_f 22.5 1.3E+02 0.0028 24.1 3.9 39 114-157 38-76 (99)
157 KOG3802|consensus 22.4 1.9E+02 0.0041 31.9 6.0 51 44-94 199-258 (398)
158 PRK07682 hypothetical protein; 22.0 2.7E+02 0.0059 28.5 6.9 56 175-231 144-202 (378)
159 PF10164 DUF2367: Uncharacteri 21.8 79 0.0017 28.5 2.5 31 116-146 46-76 (98)
160 TIGR01470 cysG_Nterm siroheme 21.7 3.5E+02 0.0075 26.4 7.2 35 143-191 25-59 (205)
161 TIGR00109 hemH ferrochelatase. 21.6 5.4E+02 0.012 26.8 9.0 130 124-276 97-257 (322)
162 PRK08175 aminotransferase; Val 21.5 3E+02 0.0066 28.5 7.2 53 175-230 151-211 (395)
163 COG4750 LicC CTP:phosphocholin 21.4 2.4E+02 0.0052 28.8 6.0 71 137-225 32-104 (231)
164 PF01740 STAS: STAS domain; I 21.2 1.1E+02 0.0024 26.0 3.3 38 111-152 45-82 (117)
165 PF00157 Pou: Pou domain - N-t 21.1 76 0.0016 27.3 2.2 17 58-74 21-37 (75)
166 TIGR02417 fruct_sucro_rep D-fr 21.0 2.4E+02 0.0053 27.8 6.1 84 135-225 162-249 (327)
167 PRK07550 hypothetical protein; 20.8 3.7E+02 0.008 27.7 7.6 56 174-231 152-211 (386)
168 cd06292 PBP1_LacI_like_10 Liga 20.7 2.5E+02 0.0054 26.5 5.9 24 135-158 106-129 (273)
169 PRK07337 aminotransferase; Val 20.2 3.1E+02 0.0068 28.2 6.9 26 206-231 186-211 (388)
170 cd06299 PBP1_LacI_like_13 Liga 20.0 2.2E+02 0.0047 26.7 5.3 23 136-158 101-123 (265)
No 1
>KOG3777|consensus
Probab=100.00 E-value=7.3e-59 Score=484.01 Aligned_cols=374 Identities=39% Similarity=0.625 Sum_probs=288.1
Q ss_pred CCCCCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEE
Q psy10457 109 YPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILV 188 (508)
Q Consensus 109 ~~~~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv 188 (508)
.....+|||||||+||||+||++..|+|+||.++++||.++||++++||+|.||++..+++. +|.+|+++.+++
T Consensus 7 ~~d~~~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~rd~tv~~~~~r~e~~~p~~------~l~~l~~~~~~~ 80 (443)
T KOG3777|consen 7 QQDEYLRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGHRDITVLVPSWRKEATRPDA------ILRELEEKKILV 80 (443)
T ss_pred cccccccCceeeccchhhcccchhheecccceeehhhhhhhcccCcchhchhhhhcCCchHH------HHHHHHhccccc
Confidence 35678999999999999999999999999999999999999999999999999999875543 899999999999
Q ss_pred ecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCCCCCCChh
Q psy10457 189 YTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLD 268 (508)
Q Consensus 189 ~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLGR~GP~Ld 268 (508)
|||++.+.|+|.+||||||++++|.+.+|+||+||+|||++-+.| ++|++|++||+|++++|||||||+||+||+|+
T Consensus 81 ftp~~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~~---~~~~e~ll~~s~~~~~~mpPDdplgr~GPsl~ 157 (443)
T KOG3777|consen 81 FTPDRSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILESP---RFVEERLLSYSFANSKFMPPDDPLGREGPSLD 157 (443)
T ss_pred cCCChhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhcc---cchhhHHHHhhhhhcccCCCCCcccccCcchh
Confidence 999999999999999999999999999999999999999999999 78999999999999999999999999999999
Q ss_pred hhhccccCCCCC-CCCCCCCCcccCCCcccccCCCCCCCCchhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccccc
Q psy10457 269 KFLTIDYKQNST-GAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQVNKTLSCPAVPNQYQHQEQ 347 (508)
Q Consensus 269 ~fLr~~~~~~~~-~~~cpy~~kctyg~kck~~hp~r~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 347 (508)
.||++++....+ +++||||||||||.|||||||+++++++++|++++++.++....+ .++.+.... ..
T Consensus 158 ~fL~k~p~~~aq~~q~Cpygkkctyg~kck~~h~~~~~~~qr~v~~e~~a~~~~~~~k----t~~~g~~~~-------~~ 226 (443)
T KOG3777|consen 158 NFLSKKPLLWAQNKQPCPYGKKCTYGGKCKFYHPEIARGPQRSVLDEFTASNKLETCK----TSNQGGLAE-------MV 226 (443)
T ss_pred hhhhhccchhhhcccCCCcccccCCCCceeeccccccccccccccccccccccccccc----ccchhhhhh-------hh
Confidence 999999987776 999999999999999999999999999999999999976654100 111111111 12
Q ss_pred ccccccccccccccccCCCCCCCcccCccCccCCCCCCCCchhhHHhhhcCCCCCCC--CCCCCCCc------ccccccc
Q psy10457 348 QVTVHPQKTLLSRTRSYAPDSHPEAHGSYSNLSQNSDQGAPLHQRLQRQLSLNPYEE--VPQGAPPH------QHIASQN 419 (508)
Q Consensus 348 ~~~~~~~~~~l~rt~s~~~~~~~~~~~~~~~~~~~~~~~~n~h~klqrq~~l~p~~~--~~~~~~~~------~~~~~~~ 419 (508)
.++...+...++||++|.++...++.. .-...++....+.+++|++|.. +..+. ..+..++. ...++..
T Consensus 227 ~~~~~~~~~~~~~~~~n~veq~s~~~~--~v~~~~e~~~~~r~k~L~~q~~-p~~~~~~~~~~q~p~~~~s~~sp~~~~~ 303 (443)
T KOG3777|consen 227 RGNSENSGEMTSRTRSNPVEQVSQLPS--SVGGDSEESLPNRRKPLNRQQE-PGGRNQFNTQTQPPGMGRSYASPSHSGD 303 (443)
T ss_pred hhhcccccccchhhhhcHHHHHhhccc--cccCcccccccccCcccccccc-CccccccceeccCCCCCccccCCCCCCC
Confidence 346667888899999998887766554 2234455667899999999976 44443 11122111 0001111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C--CCCCCCchhHHHHHHHHHHhhcCCChHHHHHHHHhCCCCCCH
Q psy10457 420 SSHNGGSSNGLNGYLNGHGFHNGHNAPNGSH----N--GMTRNPYEEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSA 493 (508)
Q Consensus 420 ~~~~~~~s~~~~~~~~~~~~~h~~~a~~~~~----~--~~~~~~~~~~~~r~~l~~hL~~iFp~~~V~avm~~~P~et~~ 493 (508)
..+-|+.+.+...+...+.--|.|-++.+.. + +.....-..+..|+++-+++-+.||.+.+.++-..+|.+++.
T Consensus 304 ~f~~r~~~~p~~~~~~p~~~~~~~~~p~~~~~eq~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 383 (443)
T KOG3777|consen 304 NFLPRAPSMPITVPSVPMPPPAGHPPPIGPSGEQKSEELEVGDNGRKHSERALLRLSQGSPLPRLLLLVTDNGRPKEADA 383 (443)
T ss_pred cccCcCccCCcCCCCCCCCCCCCCCCCCCcchhhhhhhhccccCCCcccccccccCCccCcccccccccccccccccccc
Confidence 2233322222211111121222222222221 1 111122256778999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q psy10457 494 HVLCATILAMFPPS 507 (508)
Q Consensus 494 ~~ica~Il~~~~~~ 507 (508)
..+| +.+.++++
T Consensus 384 ~d~~--~~~~~~~~ 395 (443)
T KOG3777|consen 384 NDSS--RELLIPPG 395 (443)
T ss_pred ccch--hcccCCCC
Confidence 9998 55555553
No 2
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=100.00 E-value=1.1e-45 Score=336.92 Aligned_cols=155 Identities=49% Similarity=0.878 Sum_probs=125.3
Q ss_pred CCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCC
Q psy10457 113 KLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPS 192 (508)
Q Consensus 113 ~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPS 192 (508)
++|+|||||+||||+|++.+.|+++||.+||+||+++||+.++||+++++.... ..+++++++|++|+++|.|++||+
T Consensus 1 ~~r~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~rG~~~v~v~~~~~~~~~~--~~~~~~~~~L~~l~~~~~i~~tp~ 78 (155)
T PF11977_consen 1 KLRPVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKSRGHEVVVVFPPNYRYKKL--AKKSDDQEELEKLIRKGIIYFTPS 78 (155)
T ss_dssp -B--EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHHTT---EEEEEEGGGGS-T--TS-EESTCHHHHHHHTTSEEEE-E
T ss_pred CCCEEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHHcCCCeEEEEcchhhhccc--cCCCChHHHHHHHHHCCeEEEcCC
Confidence 479999999999999999888999999999999999999988888899875431 346789999999999999999999
Q ss_pred cccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCCCCCCChhh
Q psy10457 193 RLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDK 269 (508)
Q Consensus 193 r~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLGR~GP~Ld~ 269 (508)
+...|+++.+|||+|||++|.++||+|||||+||||++++|+|++||++|+|+|||++|.||||+||+||+||+|++
T Consensus 79 ~~~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~~~~~~~~~~~~~~i~~tf~~~~~~~~~d~~~r~~~~l~~ 155 (155)
T PF11977_consen 79 GSNYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIFENPELRRWIERRLIRFTFVGDEFMPPPDPLGRVGPSLED 155 (155)
T ss_dssp EEETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHHH-HHHHHHHHHHEE--EEETTEEE--SSTTTTTS--HH-
T ss_pred CCCCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhhcchHHHHHHHHeeeeEEEECCEEEcCCCccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=98.45 E-value=5.5e-07 Score=81.42 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=80.5
Q ss_pred CccchHHHHHHHHHHHHcCCceEEEEecccccccCCC--CCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHHH
Q psy10457 132 ELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRP--DNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFIL 209 (508)
Q Consensus 132 k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~--d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryIL 209 (508)
....++.|...+-+|.-|||+ ++||+|.+++...-. -.+++|.+.++.|...++|.|+-.+.. . .--..++
T Consensus 5 ~nLpVk~L~eIll~FilrGHK-T~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~-~-----~~~~eV~ 77 (122)
T PF14626_consen 5 LNLPVKALVEILLHFILRGHK-TVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNR-K-----KWFNEVL 77 (122)
T ss_pred ccCcHHHHHHHHHHHHhccCe-eEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccH-H-----HHHHHHH
Confidence 346789999999999999997 799999999874211 257999999999999999999755410 0 1124789
Q ss_pred HHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeC
Q psy10457 210 RLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVN 250 (508)
Q Consensus 210 klA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvg 250 (508)
..|.+++|++|||..||---.+- +..+ -.+|.|...|.|
T Consensus 78 ~~Aek~~GI~VSs~E~~~~~~~~-~y~k-~seriitp~f~n 116 (122)
T PF14626_consen 78 DEAEKTHGIFVSSSEYRRRNFKI-HYNK-PSERIITPCFLN 116 (122)
T ss_pred HHHHHcCcEEECCHHHhcccccc-cccC-cccceechhhcC
Confidence 99999999999999886433220 0100 135777777654
No 4
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=96.92 E-value=0.00088 Score=62.93 Aligned_cols=91 Identities=21% Similarity=0.253 Sum_probs=49.8
Q ss_pred EEEeccchhhhcCC------CCcc-ch--HHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcE
Q psy10457 117 VVIDGSNVAMSHGN------KELF-SC--IGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRIL 187 (508)
Q Consensus 117 IVIDGSNVAmshG~------~k~F-S~--rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~L 187 (508)
+||||-||.+.-.. ...+ .. +-|....+|-...|++.++||+........ ........ =-|
T Consensus 1 LlIDGYNli~~~~~l~~~~~~~~l~~aR~~Li~~L~~y~~~~~~~v~VVFDa~~~~~~~------~~~~~~~g----i~V 70 (166)
T PF05991_consen 1 LLIDGYNLIHAWPELRSLAERGDLEAARERLIEMLSEYAQFSGYEVIVVFDAYKVPGGS------EEREEYGG----IEV 70 (166)
T ss_pred CeEcchhhhCCCHHHHhhcCcCCHHHHHHHHHHHHHHHhcccCCEEEEEEeCCcCCCCC------ceeeeeCc----eEE
Confidence 68999999865221 1111 12 233444566677899989999864432211 00000100 135
Q ss_pred EecCCcccCCCcccccchHHHHHHHHhCCc-----EEEeCCcc
Q psy10457 188 VYTPSRLIGGKRLVCYDDRFILRLAADTDG-----IVVSNDNY 225 (508)
Q Consensus 188 v~TPSr~v~Gkr~~syDDryILklA~e~dG-----vIVSNDnY 225 (508)
+||+.+ .-+|.||..++.+... +|||+|+.
T Consensus 71 vft~~~--------~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~ 105 (166)
T PF05991_consen 71 VFTKEG--------ETADDYIERLVRELKNRPRQVTVVTSDRE 105 (166)
T ss_pred EECCCC--------CCHHHHHHHHHHHhccCCCeEEEEeCCHH
Confidence 666654 3466666666666544 66666654
No 5
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.86 E-value=0.0051 Score=39.27 Aligned_cols=19 Identities=53% Similarity=1.454 Sum_probs=18.0
Q ss_pred CCCCCCcccCCCcccccCC
Q psy10457 283 PCPYGRKCTYGSKCKFNHP 301 (508)
Q Consensus 283 ~cpy~~kctyg~kck~~hp 301 (508)
+|-||..|+++.+|.|.||
T Consensus 1 ~Ck~~~~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPNCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCCCCCCCcCccCCc
Confidence 5999999999999999998
No 6
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=92.39 E-value=0.83 Score=45.34 Aligned_cols=102 Identities=24% Similarity=0.149 Sum_probs=58.7
Q ss_pred CcEEEeccchhhh--cCCCC-------cc--chHHHHHHHHHHHHcC--CceEEEEe---cccccccC------CCCCCC
Q psy10457 115 RPVVIDGSNVAMS--HGNKE-------LF--SCIGIKICVDWFRARG--HKEITVFV---PKWRKESC------RPDNLI 172 (508)
Q Consensus 115 RpIVIDGSNVAms--hG~~k-------~F--S~rGI~iAV~yF~~RG--h~~VvVFV---P~~Rk~~~------r~d~~i 172 (508)
+.++|||+|+++. ++... .. -+.|+...+..+.+.. -..++||+ +.||++.- |+..+.
T Consensus 2 ~~llIDg~~l~yr~~~a~~~~~~~~~g~~t~ai~g~~~~l~~~~~~~~p~~~~~~fD~~~~~~R~~l~p~YK~~R~~~p~ 81 (240)
T cd00008 2 RLLLIDGSSLAYRAYFALPPLKNSPKGLPTNAVYGFLNMLLKLIKEYKPTYVAVVFDAGGKTFRHELYPEYKANRKKMPE 81 (240)
T ss_pred cEEEEEChHHHHHHHHCCCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCcccccccHHHHcCCCCCCH
Confidence 4689999999973 34311 11 2456666777766655 22466777 46775531 221111
Q ss_pred Ch----HHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh---C--CcEEEeCCc
Q psy10457 173 KN----QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD---T--DGIVVSNDN 224 (508)
Q Consensus 173 ~d----~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e---~--dGvIVSNDn 224 (508)
.= ..+.+.|...|+-++...+ -.+|=.|-.+|.. . ..+|||.|.
T Consensus 82 ~l~~q~~~~~~~l~~~gi~~i~~~~--------~EADD~ia~la~~~~~~g~~~~I~S~Dk 134 (240)
T cd00008 82 ELREQIPLIKELLEALGIPVLEIEG--------YEADDVIGTLAKKAEAEGYKVVIVSGDK 134 (240)
T ss_pred HHHHHHHHHHHHHHHCCCCEEecCC--------cCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 10 1222344567877776544 4677788877753 2 348999995
No 7
>smart00475 53EXOc 5'-3' exonuclease.
Probab=91.49 E-value=0.93 Score=45.81 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=58.1
Q ss_pred CcEEEeccchhh--hcCC-----CCcc---chHHHHHHHHHHHHcCC--ceEEEEe---ccccccc------CCCCCCCC
Q psy10457 115 RPVVIDGSNVAM--SHGN-----KELF---SCIGIKICVDWFRARGH--KEITVFV---PKWRKES------CRPDNLIK 173 (508)
Q Consensus 115 RpIVIDGSNVAm--shG~-----~k~F---S~rGI~iAV~yF~~RGh--~~VvVFV---P~~Rk~~------~r~d~~i~ 173 (508)
+.++|||+|+.+ +++. .... -+.|+...+.-+.+... ..++||+ +.||++. .|...+-.
T Consensus 2 ~lllIDg~~~i~R~~~a~~~l~~~~G~~t~a~~g~~~~l~~l~~~~~p~~~~~~fD~~~~~~R~~l~p~YKa~R~~~pe~ 81 (259)
T smart00475 2 KLLLVDGSSLAFRAYFALPPLKNSKGEPTNAVYGFLRMLLKLIKEEKPTYVAVVFDAKGKTFRHELYPEYKANRPKTPDE 81 (259)
T ss_pred cEEEEeCcHHHHHHHHCCCcccCCCCCcccHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhHHHHhCCCCCCHH
Confidence 368999999988 4442 1112 24566666666655432 1367887 4687552 12111100
Q ss_pred ---hHHHHH-HHHHCCcEEecCCcccCCCcccccchHHHHHHHHh-----CCcEEEeCCc
Q psy10457 174 ---NQEVLS-ELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD-----TDGIVVSNDN 224 (508)
Q Consensus 174 ---d~~iL~-eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-----~dGvIVSNDn 224 (508)
.-..+. -|...|+-++...+ -.+|-.|-.+|.. ...+|||+|.
T Consensus 82 L~~q~~~~~~~l~~~gi~~i~~~g--------~EADD~iatla~~~~~~g~~~~IvS~Dk 133 (259)
T smart00475 82 LLEQIPLIKELLDALGIPVLEVEG--------YEADDVIATLAKKAEAEGYEVRIVSGDK 133 (259)
T ss_pred HHHHHHHHHHHHHHCCCCEEeeCC--------cCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 112222 34557887776444 3677788888775 2457999995
No 8
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=91.26 E-value=0.43 Score=36.34 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=28.7
Q ss_pred HHHHHhhCCCHHHHHHHHHHh--CCCCChHHHHHHHHh
Q psy10457 54 VDFALKLGYTEDLVQTALNKL--GPNPSHNELLAELIK 89 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~kl--g~~~~~n~~l~Elik 89 (508)
++-..-|||++.++..|+.++ +++.+.+++|.+-+|
T Consensus 7 ~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 7 LEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 455678999999999999999 788888888877765
No 9
>PRK14976 5'-3' exonuclease; Provisional
Probab=90.92 E-value=1.6 Score=44.69 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=58.4
Q ss_pred CcEEEeccchhhh--cCC---------CCcc---chHHHHHHHHHHHHcC-C-ceEEEEe---cccccccC------CCC
Q psy10457 115 RPVVIDGSNVAMS--HGN---------KELF---SCIGIKICVDWFRARG-H-KEITVFV---PKWRKESC------RPD 169 (508)
Q Consensus 115 RpIVIDGSNVAms--hG~---------~k~F---S~rGI~iAV~yF~~RG-h-~~VvVFV---P~~Rk~~~------r~d 169 (508)
+.++|||+|+++. ++. .... -+.|+...|..+.+.. - ..++||+ +.||++.- |..
T Consensus 4 ~~lliDg~~~~~ra~~a~~~~~~~l~~~~G~~t~a~~gf~~~l~~ll~~~~p~~~~v~fD~~~~~~R~~l~p~YKanR~~ 83 (281)
T PRK14976 4 KALLIDGNSLIFRSYYATLKQGPKLKNNKGLPTNAIHTFLTMIFKILKKLNPSYILIAFDAGRKTFRHQLYDEYKQGRKK 83 (281)
T ss_pred cEEEEeCcHHHHHHHHccCccCCCccCCCCCCchHHHHHHHHHHHHHHhcCCCEEEEEEECCCCcccccccHHHhcCCCC
Confidence 4789999999984 552 1111 2356666666666554 1 2466777 36775531 211
Q ss_pred CCCCh----HHHHH-HHHHCCcEEecCCcccCCCcccccchHHHHHHHHhC-----CcEEEeCCc
Q psy10457 170 NLIKN----QEVLS-ELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADT-----DGIVVSNDN 224 (508)
Q Consensus 170 ~~i~d----~~iL~-eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~-----dGvIVSNDn 224 (508)
. ..+ ...+. -|...|+-++...+ -.+|=.|-.+|.+. ..+|||+|.
T Consensus 84 ~-p~~l~~q~~~i~~~l~~~gi~~~~~~g--------~EADDviatla~~~~~~g~~v~IvS~Dk 139 (281)
T PRK14976 84 T-PESLISQIPLLKKILKLAGIKWEEQPG--------YEADDLIGSLAKKLSKQNITVLIYSSDK 139 (281)
T ss_pred C-CHHHHHHHHHHHHHHHHCCCCEEecCC--------cCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 1 111 12222 34556877776544 46787888887753 467999994
No 10
>KOG3740|consensus
Probab=90.85 E-value=0.028 Score=62.91 Aligned_cols=85 Identities=32% Similarity=0.418 Sum_probs=61.0
Q ss_pred CCCCCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEE
Q psy10457 109 YPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILV 188 (508)
Q Consensus 109 ~~~~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv 188 (508)
.....+|.+||||+-|||+||..- | |+.+|+.+|+.+||+ +.|-....| ...++.+..++ -
T Consensus 622 ~s~r~lrrtv~~g~~~am~~~l~~-p---G~a~A~~~~~~~~~r------h~~q~q~~R---~QrE~~~~~k~------~ 682 (706)
T KOG3740|consen 622 RSNRGLRRTVIAGSSVAMVHGLQM-P---GGAMAVQNFWNAGHR------HKSQSQADR---RQRERLQDMKP------Q 682 (706)
T ss_pred ccchhhhhcccchhHHHHHHHhhC-C---Ccchhhccccccccc------chhHHHHHH---HHHHHHHhccc------c
Confidence 356678999999999999999742 2 999999999999986 545433211 11122222222 2
Q ss_pred ecCCcccCCCcccccchHHHHHHH
Q psy10457 189 YTPSRLIGGKRLVCYDDRFILRLA 212 (508)
Q Consensus 189 ~TPSr~v~Gkr~~syDDryILklA 212 (508)
.+++.-.+||.++.||-+||.++|
T Consensus 683 ~s~sQa~n~kk~~~~~~r~~~~l~ 706 (706)
T KOG3740|consen 683 RSQSQAANGKKITTYDYRFMVKLA 706 (706)
T ss_pred cchHHHhccCchhHHHHHHHhhcC
Confidence 567777899999999999998864
No 11
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=88.46 E-value=0.18 Score=34.44 Aligned_cols=15 Identities=47% Similarity=1.221 Sum_probs=11.5
Q ss_pred CcccCCCcccccCCC
Q psy10457 288 RKCTYGSKCKFNHPE 302 (508)
Q Consensus 288 ~kctyg~kck~~hp~ 302 (508)
..|.||.+|+|.|++
T Consensus 13 g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 13 GTCPFGDKCRFAHGE 27 (27)
T ss_dssp S--TTGGGSSSBSSG
T ss_pred CccCCCCCcCccCCC
Confidence 479999999999985
No 12
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=88.28 E-value=0.52 Score=45.49 Aligned_cols=97 Identities=23% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCcEEEeccchh-hhcCCC---CccchH----HHHHH-HHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHC
Q psy10457 114 LRPVVIDGSNVA-MSHGNK---ELFSCI----GIKIC-VDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKD 184 (508)
Q Consensus 114 lRpIVIDGSNVA-mshG~~---k~FS~r----GI~iA-V~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~ 184 (508)
.+.++|||=||- .|...+ +.+++. .|..+ ++|=--.|++.|+||++++-.... +++....
T Consensus 3 ~~iLLVDGYNmIgaWp~Lk~lkd~~~LE~AR~~LIe~l~~Y~s~~g~~iivVFDA~~v~g~~--------~~~~~~~--- 71 (173)
T COG3688 3 MRILLVDGYNMIGAWPELKQLKDRNGLEAARDKLIEALAEYQSFTGYKIIVVFDAHYVPGVG--------REYKNHR--- 71 (173)
T ss_pred ceEEEeccchhccccHHHHHHHhhccHHHHHHHHHHHHHHhhcccCceEEEEEEcccccccc--------ccccccc---
Confidence 457899999983 333222 223321 12222 233333599999999998764422 1111111
Q ss_pred CcEEecCCcccCCCcccccchHHHHHHHHhCC------cEEEeCCcchhhh
Q psy10457 185 RILVYTPSRLIGGKRLVCYDDRFILRLAADTD------GIVVSNDNYRDLC 229 (508)
Q Consensus 185 g~Lv~TPSr~v~Gkr~~syDDryILklA~e~d------GvIVSNDnYRD~~ 229 (508)
=-++||-.+ --+|.||=++|.+.+ -+|+|.|+=--|.
T Consensus 72 vsvvyT~~~--------ETADs~IEr~~~el~~~~t~~V~VaTSD~~EQ~~ 114 (173)
T COG3688 72 VSVVYTKEG--------ETADSFIERYVAELRNAATHQVIVATSDRAEQWT 114 (173)
T ss_pred eEEEEecCC--------ccHHHHHHHHHHHHhccccceEEEEeCchhhhhh
Confidence 125677555 468999999999876 2577888765554
No 13
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=81.65 E-value=2.1 Score=34.66 Aligned_cols=38 Identities=34% Similarity=0.540 Sum_probs=28.3
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhCCCC-------ChHHHHHHHHh
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKLGPNP-------SHNELLAELIK 89 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~klg~~~-------~~n~~l~Elik 89 (508)
.-|+-|.-+||..+.|-.||.++|-.. ..|.||.||.|
T Consensus 11 ~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELLk 55 (55)
T PF09288_consen 11 DLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELLK 55 (55)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHhC
Confidence 568999999999999999999998643 35789999864
No 14
>PRK09482 flap endonuclease-like protein; Provisional
Probab=79.99 E-value=11 Score=38.39 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=56.2
Q ss_pred CcEEEeccchhhh-c-CCC--Ccc--chHHHHHHHHHH-HHcCCc-eEEEEe---cc--ccccc------CCCCCCCChH
Q psy10457 115 RPVVIDGSNVAMS-H-GNK--ELF--SCIGIKICVDWF-RARGHK-EITVFV---PK--WRKES------CRPDNLIKNQ 175 (508)
Q Consensus 115 RpIVIDGSNVAms-h-G~~--k~F--S~rGI~iAV~yF-~~RGh~-~VvVFV---P~--~Rk~~------~r~d~~i~d~ 175 (508)
+.++|||+++++. + +.. ..+ -+.|....+.-+ ++..-+ .+++|+ +. ||++. .|+..+-.=.
T Consensus 4 ~llLiDg~~l~~R~~~a~~~~~g~t~av~gf~~~l~~ll~~~~p~~i~v~fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~ 83 (256)
T PRK09482 4 HLLIIDALNLIRRIHAVQPSPNDINACVETCQHALDKLIRHSQPTHAVAVFDGDARSSGWRHQLLPDYKAGRKPMPEALQ 83 (256)
T ss_pred eEEEEeCcHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEEEeCCCCCcccHHHHhHHHhcCCCCCcHHHH
Confidence 3689999999883 2 211 111 122333333333 333322 355677 44 77552 1221111111
Q ss_pred ---HHH-HHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh-----CCcEEEeCCcchhhhh
Q psy10457 176 ---EVL-SELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD-----TDGIVVSNDNYRDLCL 230 (508)
Q Consensus 176 ---~iL-~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-----~dGvIVSNDnYRD~~~ 230 (508)
..+ +.|...|+-++...+ -.+|=.|-.+|.+ .+.+|||+| +|+.+
T Consensus 84 ~Q~~~i~~~l~~~gi~~~~~~g--------~EADDvIatla~~~~~~~~~v~I~S~D--KDl~Q 137 (256)
T PRK09482 84 QGLPAIRAAFEELGIDSWHADG--------NEADDLIATLAVKVAQAGHQATIVSTD--KGYCQ 137 (256)
T ss_pred HHHHHHHHHHHhCCCCEeccCC--------cCHHHHHHHHHHHHHHCCCeEEEEECC--CCccc
Confidence 122 445667887777655 4577777777764 356799999 45544
No 15
>PRK05755 DNA polymerase I; Provisional
Probab=78.90 E-value=8.6 Score=45.01 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=56.0
Q ss_pred CcEEEeccchhh--hcCCC------Ccc---chHHHHHHHHHHHHcCCc---eEEEEe---cccccccC------CCCCC
Q psy10457 115 RPVVIDGSNVAM--SHGNK------ELF---SCIGIKICVDWFRARGHK---EITVFV---PKWRKESC------RPDNL 171 (508)
Q Consensus 115 RpIVIDGSNVAm--shG~~------k~F---S~rGI~iAV~yF~~RGh~---~VvVFV---P~~Rk~~~------r~d~~ 171 (508)
+.++|||+|+++ +++.. ... -+.|....+.-+.+. ++ .++||+ +.||++.- |...+
T Consensus 3 ~~~liDg~~~~~r~~~a~~~~~~~~~g~~~~a~~g~~~~l~~~~~~-~~p~~~~v~fD~~~~~~R~~~~~~YK~~R~~~p 81 (880)
T PRK05755 3 TLLLIDGSSLLFRAFYALLPTLRNSDGLPTGAVYGFLNMLLKLLKE-EKPTHVAVAFDAKGKTFRHELYPEYKANRPPMP 81 (880)
T ss_pred eEEEEeCcHHHHHHHHCCCCcccCCCCCcccHHHHHHHHHHHHHHh-cCCCEEEEEEECCCCccccccCHHHhCCCCCCc
Confidence 368999999998 34430 111 134455455444432 32 267888 46876531 21111
Q ss_pred CCh----HHHH-HHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh-----CCcEEEeCCc
Q psy10457 172 IKN----QEVL-SELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD-----TDGIVVSNDN 224 (508)
Q Consensus 172 i~d----~~iL-~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-----~dGvIVSNDn 224 (508)
.+ -..+ +-|...|+-++...+ -.+|-.|-.+|.+ ...+|||+|.
T Consensus 82 -~~l~~q~~~~~~~l~~~gi~~~~~~g--------~EADD~ia~la~~~~~~~~~~~i~S~Dk 135 (880)
T PRK05755 82 -EDLREQIPLIRELLRALGIPLLELEG--------YEADDVIGTLAKQAEAAGYEVLIVTGDK 135 (880)
T ss_pred -HHHHHHHHHHHHHHHHCCCCEEeeCC--------ccHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 11 1112 234567887776544 4678888888853 2448999995
No 16
>PHA02567 rnh RnaseH; Provisional
Probab=78.25 E-value=13 Score=39.02 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=54.8
Q ss_pred CCcEEEeccchhhh--cCC---CCccchH----HHHHHHHHHHHc---CC-ceEEEEecc----ccccc------CCCCC
Q psy10457 114 LRPVVIDGSNVAMS--HGN---KELFSCI----GIKICVDWFRAR---GH-KEITVFVPK----WRKES------CRPDN 170 (508)
Q Consensus 114 lRpIVIDGSNVAms--hG~---~k~FS~r----GI~iAV~yF~~R---Gh-~~VvVFVP~----~Rk~~------~r~d~ 170 (508)
--.++||||++++. +++ +..+... ++...|....++ -+ ..+++|+.. ||++. .|+..
T Consensus 14 ~~~~LiDgs~i~~~~~~a~l~~~~~~~~~~ir~~v~nsL~~~v~~~k~~~~~i~vaFD~~~~~tfR~elyp~YKAnR~~~ 93 (304)
T PHA02567 14 EGVNLIDFSQIIIATIMANFKPKDKINEAMVRHLVLNSIRYNVKKFKEEYPEIVLAFDNSKSGYWRRDIAWYYKKNRKKD 93 (304)
T ss_pred CCEEEEehHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCchhhhhhHhhcCCCCC
Confidence 34699999999874 332 2223332 244445554443 12 246677753 66542 12211
Q ss_pred CCCh----H--------HHHHHHHHC-CcEEecCCcccCCCcccccchHHHHHHHHh---C--CcEEEeCCc
Q psy10457 171 LIKN----Q--------EVLSELEKD-RILVYTPSRLIGGKRLVCYDDRFILRLAAD---T--DGIVVSNDN 224 (508)
Q Consensus 171 ~i~d----~--------~iL~eL~k~-g~Lv~TPSr~v~Gkr~~syDDryILklA~e---~--dGvIVSNDn 224 (508)
+ .+ . .++.++.+. |+.++.-.+ -.+|=.|-.+|.. . ..+|||+|.
T Consensus 94 P-eel~~q~~~l~~~l~~ii~el~~~~gi~~l~~~g--------~EADDvIgTLA~k~~~~g~~VvIvS~DK 156 (304)
T PHA02567 94 R-EESPWDWEGLFEAINKIVDEIKENMPYKVMKIDK--------AEADDIIAVLTKKFSAEGRPVLIVSSDG 156 (304)
T ss_pred C-hHHHHHHHHhhhhHHHHHHHHHHHCCCCEEEeCC--------ccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 1 11 0 334444333 887776555 4667777777753 2 458999995
No 17
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=76.60 E-value=7.6 Score=36.87 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=54.3
Q ss_pred CcEEEeccchhhh--cCCC-------Cccch---HHHHHHHHHH-HHcCCc-eEEEEe---cccccccCCCCCC-----C
Q psy10457 115 RPVVIDGSNVAMS--HGNK-------ELFSC---IGIKICVDWF-RARGHK-EITVFV---PKWRKESCRPDNL-----I 172 (508)
Q Consensus 115 RpIVIDGSNVAms--hG~~-------k~FS~---rGI~iAV~yF-~~RGh~-~VvVFV---P~~Rk~~~r~d~~-----i 172 (508)
+.++|||+|+++. |+.. +.+.. .|....|.-+ .+.... .++||+ +.||++.- ++-+ .
T Consensus 2 ~llLIDg~~l~~Ra~~a~~~~~l~~~~G~~t~ai~g~~~~l~~l~~~~~p~~~vv~fD~~~~~fR~~l~-p~YKanR~~~ 80 (169)
T PF02739_consen 2 KLLLIDGNSLLFRAYYALPKDPLRNSDGEPTNAIYGFLRMLLKLLKDFKPDYVVVAFDSKGPTFRKELY-PEYKANRKPM 80 (169)
T ss_dssp EEEEEEHHHHHHHCCCCCTTST-BETTSEB-HHHHHHHHHHHHHHHHTTEEEEEEEEEBSSCHHHHHCC-TTTTHHHHHH
T ss_pred eEEEEechHHHHHHHHhhccCCCcCCCCCChHHHHHHHHHHHHHHHHcCCceEEEEecCCCcchHHHHH-HHHHhCCCCC
Confidence 4689999999973 3322 12222 3333333333 344422 356666 34776542 1111 0
Q ss_pred C-----hHHHHHH-HHHCCcEEecCCcccCCCcccccchHHHHHHHHh---C--CcEEEeCCcchhhhh
Q psy10457 173 K-----NQEVLSE-LEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD---T--DGIVVSNDNYRDLCL 230 (508)
Q Consensus 173 ~-----d~~iL~e-L~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e---~--dGvIVSNDnYRD~~~ 230 (508)
. .-..+.+ |...|+-++...+ -.+|=.|-.+|.. . ..+|||.|. |+.+
T Consensus 81 p~~l~~q~~~i~~~l~~~gi~~~~~~g--------~EADDvIatla~~~~~~~~~v~IvS~Dk--D~~Q 139 (169)
T PF02739_consen 81 PEELIPQLPYIKELLEALGIPVLEVPG--------YEADDVIATLAKKASEEGFEVIIVSGDK--DLLQ 139 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEETT--------B-HHHHHHHHHHHHHHTTCEEEEE-SSG--GGGG
T ss_pred CHHHHHHHHHHHHHHHHCCCCEecCCC--------CcHHHHHHHHHhhhccCCCEEEEEcCCC--CHHH
Confidence 1 1123333 3556887666555 5677777777664 2 468999994 6555
No 18
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=75.90 E-value=7.6 Score=41.27 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=46.4
Q ss_pred HHHcCCceEEEEeccccccc----C------CCCCCCChHHHHHHHHHCCc--EEecCCcccCCCcccccchHHHHHHHH
Q psy10457 146 FRARGHKEITVFVPKWRKES----C------RPDNLIKNQEVLSELEKDRI--LVYTPSRLIGGKRLVCYDDRFILRLAA 213 (508)
Q Consensus 146 F~~RGh~~VvVFVP~~Rk~~----~------r~d~~i~d~~iL~eL~k~g~--Lv~TPSr~v~Gkr~~syDDryILklA~ 213 (508)
..+-|+=+-++++|.+-... + +++..-..-++|+++.+..- +..-|.-+. .+ ..-|.-++++|+
T Consensus 178 i~~TGFleG~iiiP~FVL~ELQ~iADssD~lKR~RGRRGLdILn~iqk~~~~~v~I~~~Df~---di-~eVD~KLvklAk 253 (356)
T COG4956 178 ILQTGFLEGTIIIPQFVLLELQHIADSSDDLKRNRGRRGLDILNEIQKEDPIQVEIYEGDFE---DI-PEVDSKLVKLAK 253 (356)
T ss_pred HHHhCCccceEeeeHHHHHHHHHHhhccchhhhhcccchhHHHHHHHhhCCCcEEEccCCcc---ch-hhHHHHHHHHHH
Confidence 34556656677788763221 0 11111234578999988774 444443311 11 134788999999
Q ss_pred hCCcEEEeCCcc
Q psy10457 214 DTDGIVVSNDNY 225 (508)
Q Consensus 214 e~dGvIVSNDnY 225 (508)
+.+|.+||||-=
T Consensus 254 ~~~g~lvTND~N 265 (356)
T COG4956 254 VTGGKLVTNDFN 265 (356)
T ss_pred HhCCEEEeccCc
Confidence 999999999943
No 19
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=75.37 E-value=5.9 Score=37.54 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=41.2
Q ss_pred HHHHHHHCCcEE-ecCCcccCCCcccccchHHHHHHHHhCCc-EEEeCCcchhhhhcChhH
Q psy10457 177 VLSELEKDRILV-YTPSRLIGGKRLVCYDDRFILRLAADTDG-IVVSNDNYRDLCLESPDF 235 (508)
Q Consensus 177 iL~eL~k~g~Lv-~TPSr~v~Gkr~~syDDryILklA~e~dG-vIVSNDnYRD~~~E~Pe~ 235 (508)
.+.-+-..+.++ ++|...++ ...+++|.++|.+|.+.+| +|||-|+ |+...+++.
T Consensus 66 ~v~~l~~~~~~i~I~p~~~f~--~~RDp~Dn~~L~~A~~~kA~~lvTgD~--dLL~lr~~n 122 (142)
T COG1569 66 LVLVLFESVSLIAINPLEKFN--ICRDPKDNKLLALAYESKADYLVTGDQ--DLLVLRDEN 122 (142)
T ss_pred HHHHHHHhheeEeeccccccc--ccCCchHHHHHHHHHhccCCEEEEcch--hhheecccC
Confidence 445555555555 77776432 3447889999999999999 9999999 998877654
No 20
>smart00356 ZnF_C3H1 zinc finger.
Probab=74.46 E-value=2.3 Score=27.81 Aligned_cols=21 Identities=43% Similarity=1.126 Sum_probs=16.6
Q ss_pred CCCCC--CCcccCCCcccccCCC
Q psy10457 282 APCPY--GRKCTYGSKCKFNHPE 302 (508)
Q Consensus 282 ~~cpy--~~kctyg~kck~~hp~ 302 (508)
.+|++ ...|.+|..|.|.|+.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCcC
Confidence 46886 4479999999999974
No 21
>PRK13764 ATPase; Provisional
Probab=74.18 E-value=9.1 Score=43.49 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=38.1
Q ss_pred cchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCCCCCCChhhhhcccc
Q psy10457 203 YDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTIDY 275 (508)
Q Consensus 203 yDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLGR~GP~Ld~fLr~~~ 275 (508)
.-|..|+++|.+.+|++||||.. +++..+..=|..-|.+.. +.+-.+++|+....
T Consensus 90 evD~~I~~~A~~~~~~lvT~D~~---------l~~~A~~~GI~V~~l~~~---------~~~L~ie~~~~~~a 144 (602)
T PRK13764 90 EIDALIREVAKELGATLVTSDRV---------QAEVARAKGIDVIYLKPE---------REPLEIEKFFDEET 144 (602)
T ss_pred CHHHHHHHHHHHcCCEEEeCCHH---------HHHHHHHcCCEEEEeCCC---------CCccchHHHhCCCc
Confidence 45789999999999999999987 344444455655554443 12256888887554
No 22
>PF12813 XPG_I_2: XPG domain containing
Probab=73.49 E-value=4.4 Score=40.75 Aligned_cols=22 Identities=32% Similarity=0.214 Sum_probs=20.8
Q ss_pred cchHHHHHHHHhCCcEEEeCCc
Q psy10457 203 YDDRFILRLAADTDGIVVSNDN 224 (508)
Q Consensus 203 yDDryILklA~e~dGvIVSNDn 224 (508)
.+|.+|..+|.+.||.|+|||-
T Consensus 29 EAD~~~A~~A~~~~~~VLt~DS 50 (246)
T PF12813_consen 29 EADRECAALARKWGCPVLTNDS 50 (246)
T ss_pred cchHHHHHHHHHcCCeEEccCC
Confidence 6999999999999999999994
No 23
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=72.25 E-value=8.9 Score=33.20 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.0
Q ss_pred ccccchHHHHHHHHhCCc-EEEeCCcchhhh
Q psy10457 200 LVCYDDRFILRLAADTDG-IVVSNDNYRDLC 229 (508)
Q Consensus 200 ~~syDDryILklA~e~dG-vIVSNDnYRD~~ 229 (508)
...+||..++..|...++ +|||+| +|+.
T Consensus 84 ~~D~~D~~~l~~A~~~~ad~iVT~D--kdll 112 (114)
T TIGR00305 84 CRDKKDNKFLNTAYASKANALITGD--TDLL 112 (114)
T ss_pred CCCchhHHHHHHHHhcCCCEEEECC--HHHh
Confidence 457889999999999998 999999 4653
No 24
>KOG1677|consensus
Probab=71.08 E-value=2.2 Score=43.54 Aligned_cols=23 Identities=48% Similarity=1.000 Sum_probs=20.3
Q ss_pred CCCCCCCCc---ccCCCcccccCCCC
Q psy10457 281 GAPCPYGRK---CTYGSKCKFNHPER 303 (508)
Q Consensus 281 ~~~cpy~~k---ctyg~kck~~hp~r 303 (508)
-.+|++..+ |.||.+|+|.|++-
T Consensus 177 t~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 177 TKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred CcCCCccccCCCCCCCCcCeecCCCc
Confidence 578999876 99999999999985
No 25
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=70.56 E-value=13 Score=26.34 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=27.8
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHH
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAEL 87 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~El 87 (508)
..+++-...+||+++++..+|.+-+- +++.-+.-|
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~--d~~~A~~~L 36 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNN--NVERAVEWL 36 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHH
Confidence 46788889999999999999999975 455554443
No 26
>KOG3777|consensus
Probab=70.32 E-value=0.79 Score=50.05 Aligned_cols=37 Identities=51% Similarity=1.050 Sum_probs=32.8
Q ss_pred cEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccc
Q psy10457 116 PVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKE 164 (508)
Q Consensus 116 pIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~ 164 (508)
+|||| ++.++.|+|+++.++++|||..|+. +|.|+..
T Consensus 397 h~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~-----~P~~~~~ 433 (443)
T KOG3777|consen 397 HIVID-------HGLKKFFSCRGIAIAVQYFWKLGNR-----VPQWRTR 433 (443)
T ss_pred ccccc-------cccccccCCCCCcccccccCCcccc-----Cccchhc
Confidence 88999 7777889999999999999999995 8998854
No 27
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=69.78 E-value=7.4 Score=37.62 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=35.0
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhCCC-CChHHHHHHHHhc
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLGPN-PSHNELLAELIKL 90 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg~~-~~~n~~l~Elikl 90 (508)
...-+++...|||+..++..++.+++.+ .+.+++|.+.++.
T Consensus 149 ~~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i~~aL~~ 190 (192)
T PRK00116 149 LEEAVSALVALGYKPKEASKAVAKILKEAASVEELIREALKL 190 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHh
Confidence 5667899999999999999999999874 5788888887764
No 28
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=68.39 E-value=8.6 Score=37.47 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=30.5
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCC--CCChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGP--NPSHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~--~~~~n~~l~Elik 89 (508)
..-+++...|||+..++..++.++++ +.++.+++.+.+|
T Consensus 149 ~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~aLk 189 (194)
T PRK14605 149 SDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLALN 189 (194)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 45678999999999999999999975 4455666665554
No 29
>PHA00439 exonuclease
Probab=67.17 E-value=50 Score=34.56 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=55.0
Q ss_pred CCCcEEEeccchhhh--cCCC------Ccc---------chHHHHHHHHHHHHc----CCc-eEEEEe--ccccccc---
Q psy10457 113 KLRPVVIDGSNVAMS--HGNK------ELF---------SCIGIKICVDWFRAR----GHK-EITVFV--PKWRKES--- 165 (508)
Q Consensus 113 ~lRpIVIDGSNVAms--hG~~------k~F---------S~rGI~iAV~yF~~R----Gh~-~VvVFV--P~~Rk~~--- 165 (508)
.-..++|||+.++|. |... ..+ -+.|+...|.-+.++ ... .+++|+ ++||++.
T Consensus 5 ~~~llLIDG~~l~fRA~~A~~~~~~~~~~l~~~~G~~t~A~~gf~~~L~kl~~~~k~~~p~~i~vaFD~~~tfR~elyp~ 84 (286)
T PHA00439 5 DKGVLVMDGDYLVFQAMAAAEVETDWGEDIWTLECDHAKARQILEDSIKSYKTRKKAWKDAPIVLAFTDSVNWRKEVVPT 84 (286)
T ss_pred CCcEEEEeCcHHHHHHHHccCcccccCCCCCCCCCeeccHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCChHhhhhhH
Confidence 344689999999872 2220 001 123455555544433 333 344566 4677552
Q ss_pred ---CCCCCC--CChHHHHHHHHH-CCcEEecCCcccCCCcccccchHHHHHHHH---hC---CcEEEeCCcchhhhh
Q psy10457 166 ---CRPDNL--IKNQEVLSELEK-DRILVYTPSRLIGGKRLVCYDDRFILRLAA---DT---DGIVVSNDNYRDLCL 230 (508)
Q Consensus 166 ---~r~d~~--i~d~~iL~eL~k-~g~Lv~TPSr~v~Gkr~~syDDryILklA~---e~---dGvIVSNDnYRD~~~ 230 (508)
.|+..+ ..-..++.+|.+ .|+-++.-.+ -.+|=.|-.+|. +. ..+|||.|. |+.+
T Consensus 85 YKanR~~~p~~~~~~~~i~el~~~~gi~~i~~~G--------~EADDvIgtla~~~~~~g~~~vvIvS~DK--Dl~Q 151 (286)
T PHA00439 85 YKANRKAKRKPVGYRKFLEELMAREEWKSILEPG--------LEGDDVMGIIGTNPSLFGFKKAVLVSCDK--DFKT 151 (286)
T ss_pred hcCCCCCCCCchhhHHHHHHHHHhCCCCEEeeCC--------ccHHHHHHHHHHHHHHCCCCeEEEEeCCC--CHhh
Confidence 122111 112344556654 4554444344 356667766664 33 348999995 4444
No 30
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=64.85 E-value=30 Score=35.47 Aligned_cols=101 Identities=20% Similarity=0.111 Sum_probs=57.6
Q ss_pred CcEEEeccchhhhc--C-------CCCc-cchHHHHHHHHHHHHcCCceEEEEe---ccc-------ccccC--------
Q psy10457 115 RPVVIDGSNVAMSH--G-------NKEL-FSCIGIKICVDWFRARGHKEITVFV---PKW-------RKESC-------- 166 (508)
Q Consensus 115 RpIVIDGSNVAmsh--G-------~~k~-FS~rGI~iAV~yF~~RGh~~VvVFV---P~~-------Rk~~~-------- 166 (508)
+.|+|||++..+.. + .+.. --+.++..-+..|.+.|.+.|.||+ |.. |++..
T Consensus 25 k~laID~~~~l~r~~~a~~~~~~~~g~~~~~l~~~~~rl~~L~~~~i~pvfVFDG~~~~~K~~~~~~R~~~r~~~~~~~~ 104 (316)
T cd00128 25 KKVAIDASIWLYQFLKACRQELGSGGETTSHLQGFFYRTCRLLELGIKPVFVFDGKPPPLKAETLAKRRERREEAEEEAK 104 (316)
T ss_pred cEEEecHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 46999999976421 1 0111 1235666666678888999999997 222 11100
Q ss_pred ---------------CCCCCCC---hHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCc-EEEeCCc
Q psy10457 167 ---------------RPDNLIK---NQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDG-IVVSNDN 224 (508)
Q Consensus 167 ---------------r~d~~i~---d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dG-vIVSNDn 224 (508)
+....++ -..+.+-|...|+-+++-. ..+|-.+.+++..... .|+|+|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~gi~~i~ap---------~EAdaq~a~l~~~g~v~~i~S~Ds 172 (316)
T cd00128 105 EALEKGLEEEAKKLERRAVRVTPQMIEEAKELLRLMGIPYIVAP---------YEAEAQCAYLAKKGLVDAIITEDS 172 (316)
T ss_pred HHHHhCCHHHHHHHHhccCcCCHHHHHHHHHHHHHcCCCEEECC---------cCHHHHHHHHHhCCCeeEEEecCC
Confidence 0000111 1223344566777666633 3678888888887555 6899874
No 31
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=64.11 E-value=12 Score=31.37 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=30.2
Q ss_pred HHHHHHhhCCCHHHHHHHH------------------HHhCCCCChHHHHHHHHhcCCC
Q psy10457 53 RVDFALKLGYTEDLVQTAL------------------NKLGPNPSHNELLAELIKLGAQ 93 (508)
Q Consensus 53 ~~~f~~klgy~~~~v~~~l------------------~klg~~~~~n~~l~Eliklg~~ 93 (508)
=-+|+++||+|+.+|..+- ++-|.++..+.|++-|.++|-.
T Consensus 14 Wk~laR~LGls~~~I~~ie~~~~~~~eq~~~mL~~W~~k~G~~At~~~L~~aL~~~~~~ 72 (79)
T cd08784 14 HKRFFRKLGLSDNEIKVAELDNPQHRDRVYELLRIWRNKEGRKATLNTLIKALKDLDQR 72 (79)
T ss_pred HHHHHHHcCCCHHHHHHHHHcCCchHHHHHHHHHHHHhccCcCcHHHHHHHHHHHcccH
Confidence 3579999999988776542 4457777778888877777643
No 32
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=62.75 E-value=13 Score=36.22 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=31.5
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHh
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIK 89 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Elik 89 (508)
.-++-...|||+..++..|+.++.++.+..+++.+.+|
T Consensus 147 e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~aLk 184 (186)
T PRK14600 147 DALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRKALK 184 (186)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 45677789999999999999999877777777777665
No 33
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=60.95 E-value=41 Score=35.39 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=30.3
Q ss_pred CCcEEEeccchhhh--c------CC------CC-ccchHHHHHHHHHHHHcCCceEEEEe
Q psy10457 114 LRPVVIDGSNVAMS--H------GN------KE-LFSCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 114 lRpIVIDGSNVAms--h------G~------~k-~FS~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
-+.|.|||++..+. . |. +. +-.+.|+..-+..+.+.|.++|.||+
T Consensus 21 gk~vaIDas~~L~r~~~a~~~~~g~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~Pv~VFD 80 (338)
T TIGR03674 21 GKVVAVDAFNALYQFLSSIRQPDGTPLMDSRGRITSHLSGLFYRTINLLENGIKPVYVFD 80 (338)
T ss_pred CCEEEEeHHHHHHHHHHHHhccccchhhhccCCCcHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34799999999652 1 11 11 11356666666677888999999997
No 34
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=60.46 E-value=44 Score=36.19 Aligned_cols=71 Identities=21% Similarity=0.370 Sum_probs=50.3
Q ss_pred hHHHHHHHHHC---CcEEecCCcccC-CCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcC-h--hHHHHHh-ccee
Q psy10457 174 NQEVLSELEKD---RILVYTPSRLIG-GKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLES-P--DFRKVVE-DRIL 244 (508)
Q Consensus 174 d~~iL~eL~k~---g~Lv~TPSr~v~-Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~-P--e~K~~Ie-eRlL 244 (508)
+.+.|+++.+. .++++||+-... |.-+.-.-=.-||++|.+.|..||=.|-|.++..+. | .++.+-. +|.|
T Consensus 214 ~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rVi 292 (459)
T COG1167 214 DPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVI 292 (459)
T ss_pred CHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEE
Confidence 56777777654 689999987432 333332223489999999999999999999999984 2 2566666 4443
No 35
>PTZ00217 flap endonuclease-1; Provisional
Probab=59.74 E-value=43 Score=36.11 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=59.0
Q ss_pred CCcEEEeccchhhhc---------CC------C-CccchHHHHHHHHHHHHcCCceEEEEe---ccccccc------CCC
Q psy10457 114 LRPVVIDGSNVAMSH---------GN------K-ELFSCIGIKICVDWFRARGHKEITVFV---PKWRKES------CRP 168 (508)
Q Consensus 114 lRpIVIDGSNVAmsh---------G~------~-k~FS~rGI~iAV~yF~~RGh~~VvVFV---P~~Rk~~------~r~ 168 (508)
-+.|.|||++..+.. |. + ..--+.|+..-+..+.+.|.++|.||+ |.++... .|.
T Consensus 28 gk~vaIDa~~~lyr~~~a~~~~~~~~~l~~~~G~~t~~l~g~~~r~~~Ll~~gikPv~VFDG~~p~~K~~~~~~Rk~~R~ 107 (393)
T PTZ00217 28 GRVIAIDASMALYQFLIAIRDDSQGGNLTNEAGEVTSHISGLFNRTIRLLEAGIKPVYVFDGKPPELKSGELEKRRERRE 107 (393)
T ss_pred CcEEEEeHHHHHHHHHHHcccccccccchhccCCccHHHHHHHHHHHHHHHCCCCEEEEEcCCCchhhHHHHHHHHHHHH
Confidence 457999999986631 10 0 111245666666667788999999998 4333211 000
Q ss_pred C------------------------CCCCh---HHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCcE-EE
Q psy10457 169 D------------------------NLIKN---QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGI-VV 220 (508)
Q Consensus 169 d------------------------~~i~d---~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGv-IV 220 (508)
. ..++. ..+.+.|...|+-+++-. ..+|-.|.+++..-... |+
T Consensus 108 ~a~~~l~~a~~~g~~~~a~k~~~r~~~vt~~~~~~~~~lL~~~Gip~i~AP---------~EAdaq~A~L~~~g~v~~Vi 178 (393)
T PTZ00217 108 EAEEELEKAIEEGDDEEIKKQSKRTVRVTKEQNEDAKKLLRLMGIPVIEAP---------CEAEAQCAELVKKGKVYAVA 178 (393)
T ss_pred HhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCceEECC---------cCHHHHHHHHHHCCCeEEEe
Confidence 0 00111 223445567787777633 26788999998764444 78
Q ss_pred eCCc
Q psy10457 221 SNDN 224 (508)
Q Consensus 221 SNDn 224 (508)
|+|.
T Consensus 179 S~D~ 182 (393)
T PTZ00217 179 TEDM 182 (393)
T ss_pred CCCc
Confidence 9874
No 36
>smart00670 PINc Large family of predicted nucleotide-binding domains. From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.
Probab=59.42 E-value=9.6 Score=31.76 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHhC-CcEEEeCCc
Q psy10457 202 CYDDRFILRLAADT-DGIVVSNDN 224 (508)
Q Consensus 202 syDDryILklA~e~-dGvIVSNDn 224 (508)
..+|..|+.+|... ..+|||||.
T Consensus 84 ~~~D~~il~~a~~~~~~~lvT~D~ 107 (111)
T smart00670 84 LPNDALILATAKELGNVVLVTNDR 107 (111)
T ss_pred CCChHHHHHHHHHCCCCEEEeCCc
Confidence 34799999999999 899999996
No 37
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=59.36 E-value=17 Score=31.82 Aligned_cols=41 Identities=34% Similarity=0.462 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCHHHHHHH--------------H----HHhCCCCChHHHHHHHHhcCCC
Q psy10457 53 RVDFALKLGYTEDLVQTA--------------L----NKLGPNPSHNELLAELIKLGAQ 93 (508)
Q Consensus 53 ~~~f~~klgy~~~~v~~~--------------l----~klg~~~~~n~~l~Eliklg~~ 93 (508)
=-+|+++||.|+.+|..+ | ++-|..+..+.|++-|.+++-.
T Consensus 22 Wk~laR~LGLse~~I~~i~~~~~~~~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~ 80 (96)
T cd08315 22 WNRLMRQLGLSENEIDVAKANERVTREQLYQMLLTWVNKTGRKASVNTLLDALEAIGLR 80 (96)
T ss_pred HHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccc
Confidence 356999999998777554 2 5678888888888888887654
No 38
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=59.11 E-value=22 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=25.9
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHH
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGPNPSHNELL 84 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l 84 (508)
..+++-...+||+++++..+|.+-+-+ .+..+
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~ 33 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGN--VERAA 33 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHH
Confidence 467888899999999999999998764 44443
No 39
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=56.53 E-value=58 Score=28.91 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=52.3
Q ss_pred cEEEeccchhhhcCCC--CccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCc
Q psy10457 116 PVVIDGSNVAMSHGNK--ELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSR 193 (508)
Q Consensus 116 pIVIDGSNVAmshG~~--k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr 193 (508)
.|+|||.|+-+..... ..+....+ ++++...+.. . .+--|... . .+......+..|.+.|+.+..-..
T Consensus 4 ~ifiD~~Nl~~~~~~~~~~~~d~~~l---~~~~~~~~~~--~-~~r~y~~~-~---~~~~~~~~~~~L~~~g~~~~~~~~ 73 (149)
T cd06167 4 AVFIDGENLYYSLRDLGGKRFDYRKL---LEFLRDGGEI--V-LARAYGNW-T---SPERQRGFLDALRRLGFEPIQKPL 73 (149)
T ss_pred EEEEeHHHHHHHHHHhcCCCcCHHHH---HHHHHhCCeE--E-EEEEEEec-C---CchhHHHHHHHHHHCCcEEEEEcc
Confidence 5899999998766542 23555554 3444333321 1 11111110 0 002356778899999987765322
Q ss_pred cc--CCCcccccchHH---HHHHHHh--CC-cEEEeCCcchhhhh
Q psy10457 194 LI--GGKRLVCYDDRF---ILRLAAD--TD-GIVVSNDNYRDLCL 230 (508)
Q Consensus 194 ~v--~Gkr~~syDDry---ILklA~e--~d-GvIVSNDnYRD~~~ 230 (508)
.. .++.. -|-.. ++++|.+ .| .+|||.|. |+.-
T Consensus 74 ~~~~~~~~~--~D~~l~~d~~~~~~~~~~d~ivLvSgD~--Df~~ 114 (149)
T cd06167 74 RTRGSGKKG--VDVALAIDALELAYKRRIDTIVLVSGDS--DFVP 114 (149)
T ss_pred eecCCcccC--ccHHHHHHHHHHhhhcCCCEEEEEECCc--cHHH
Confidence 11 11121 23333 3566666 33 36899997 5544
No 40
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=55.17 E-value=5.1 Score=30.89 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHhhCCCHHHHHHHH-HHhCCC-CChHHHH
Q psy10457 54 VDFALKLGYTEDLVQTAL-NKLGPN-PSHNELL 84 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l-~klg~~-~~~n~~l 84 (508)
-|||.+||-+..+|...| +++|-. ...|+.|
T Consensus 7 ~elAk~l~v~~~~ii~~l~~~~Gi~~~~~~~~l 39 (54)
T PF04760_consen 7 SELAKELGVPSKEIIKKLFKELGIMVKSINSSL 39 (54)
T ss_dssp THHHHHHSSSHHHHHHHH-HHHTS---SSSS-E
T ss_pred HHHHHHHCcCHHHHHHHHHHhCCcCcCCCCCcC
Confidence 489999999999999999 559987 5555544
No 41
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.75 E-value=59 Score=38.75 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=54.9
Q ss_pred cEEEeccchhhh--cCCC-------Ccc---chHHHHHHHHHHHHcCCc--eEEEEe---ccccccc------CCCCCCC
Q psy10457 116 PVVIDGSNVAMS--HGNK-------ELF---SCIGIKICVDWFRARGHK--EITVFV---PKWRKES------CRPDNLI 172 (508)
Q Consensus 116 pIVIDGSNVAms--hG~~-------k~F---S~rGI~iAV~yF~~RGh~--~VvVFV---P~~Rk~~------~r~d~~i 172 (508)
.++|||+|++|. |+.. ... -+.|....+..+.+.... .++||+ +.||.+. .|+..+
T Consensus 1 l~lIDg~~l~~Ra~~a~~~~~l~~~~G~~t~av~Gf~~~l~~ll~~~~p~~i~v~FD~~~~tfR~~~~~~YKa~R~~~P- 79 (887)
T TIGR00593 1 LLLIDGHSLAFRAYFALKNKPLTNSKGEPTNAVYGFTKMLLKLLKEEKPTYVAVAFDSGTPTFRHEAYAEYKANRAPTP- 79 (887)
T ss_pred CEEEeCcHHHHHHHHCCCcccCcCCCCCEecHHHHHHHHHHHHHHhcCCCEEEEEEcCCCCcchHHHHHHHHhCCCCCh-
Confidence 378999999883 4431 111 134555555555544321 266777 4677542 122111
Q ss_pred Ch-H---HHH-HHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh-----CCcEEEeCCc
Q psy10457 173 KN-Q---EVL-SELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD-----TDGIVVSNDN 224 (508)
Q Consensus 173 ~d-~---~iL-~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-----~dGvIVSNDn 224 (508)
.+ . ..+ +-|...|+-++.-.+ -.+|-.|-.+|.+ ..-+|||.|.
T Consensus 80 e~l~~Q~~~i~~~l~~~gi~~i~~~g--------~EADDiIatla~~~~~~g~~v~IvS~Dk 133 (887)
T TIGR00593 80 EELIEQIPLIKELLDALGIPILEVEG--------YEADDVIATLAKQAEKEGYEVRIISGDK 133 (887)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEeeCC--------ccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 11 1 122 233557886665444 3677788887764 2458999995
No 42
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=54.65 E-value=13 Score=34.23 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=23.5
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhCCCCC
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLGPNPS 79 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg~~~~ 79 (508)
...|++|.++-|-|+++|+.+|++.|....
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSPPA 52 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--S-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCccc
Confidence 668999999999999999999999987754
No 43
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=54.37 E-value=3 Score=29.13 Aligned_cols=19 Identities=47% Similarity=1.093 Sum_probs=8.7
Q ss_pred CCCCCCcccCCCc---ccccCC
Q psy10457 283 PCPYGRKCTYGSK---CKFNHP 301 (508)
Q Consensus 283 ~cpy~~kctyg~k---ck~~hp 301 (508)
.|+||.+|---|. =.|.||
T Consensus 2 ~C~YG~~CYRkNp~H~~~f~Hp 23 (26)
T PF10283_consen 2 PCKYGAKCYRKNPQHFKEFSHP 23 (26)
T ss_dssp E-TTGGG-S--SCCHHHHCEST
T ss_pred CCCcchhhhcCCHHHHhhcCCC
Confidence 5888887754442 245555
No 44
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.
Probab=54.05 E-value=14 Score=31.99 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=22.0
Q ss_pred cccchHHHHHHHHhCCcEEEeCCc
Q psy10457 201 VCYDDRFILRLAADTDGIVVSNDN 224 (508)
Q Consensus 201 ~syDDryILklA~e~dGvIVSNDn 224 (508)
...+|.+|+..|.+.|+.|||+|+
T Consensus 103 ~~~~D~~i~a~A~~~~~~lvT~D~ 126 (142)
T TIGR00028 103 RLVTDAHLAALAREHGAELVTFDR 126 (142)
T ss_pred CCchHHHHHHHHHHcCCEEEecCC
Confidence 468999999999999999999995
No 45
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=53.18 E-value=46 Score=34.25 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=33.6
Q ss_pred CCcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 184 DRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 184 ~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
-++|++++..+.-|.-+.-..=.-|+++|.+.|.+||.-|=|.|+...
T Consensus 166 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~ 213 (388)
T PRK07366 166 ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFD 213 (388)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccC
Confidence 356666655555565443222236788999999999999999998753
No 46
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=52.69 E-value=27 Score=30.91 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCHHHHHHHH-------------------HHhCCCCChHHHHHHHHhcCC
Q psy10457 53 RVDFALKLGYTEDLVQTAL-------------------NKLGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 53 ~~~f~~klgy~~~~v~~~l-------------------~klg~~~~~n~~l~Eliklg~ 92 (508)
=.+|+++||.|+.+|..+- ++.|..+..++|++-|.+++-
T Consensus 23 wK~faR~lglse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l 81 (97)
T cd08316 23 VKKFVRKSGLSEPKIDEIKLDNPQDTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKL 81 (97)
T ss_pred HHHHHHHcCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHccc
Confidence 3579999999998776654 456777777777777776654
No 47
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=52.04 E-value=27 Score=30.01 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=28.0
Q ss_pred HHHHhhCCCHHHHHHH-------------------HHHhCCCCChHHHHHHHHhcCC
Q psy10457 55 DFALKLGYTEDLVQTA-------------------LNKLGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 55 ~f~~klgy~~~~v~~~-------------------l~klg~~~~~n~~l~Eliklg~ 92 (508)
..|++|||++.+|..+ .++-|.+|..+.|++-|.+++-
T Consensus 20 ~LA~eLg~s~~dI~~i~~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R 76 (84)
T cd08803 20 ELARELNFSVDEINQIRVENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINR 76 (84)
T ss_pred HHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCc
Confidence 4688899988776554 2446678888888888888763
No 48
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=51.90 E-value=34 Score=35.28 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=56.6
Q ss_pred CCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCC
Q psy10457 113 KLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPS 192 (508)
Q Consensus 113 ~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPS 192 (508)
....|+||..--....-.=..=+..|...|++|+.++||+.|.++....... .....-..++..|.+.|+-.. +.
T Consensus 137 ~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~----~~~~R~~Gf~~al~~~~~~~~-~~ 211 (333)
T COG1609 137 GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSS----ASRERLEGYRAALREAGLPIN-PE 211 (333)
T ss_pred CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccc----cHhHHHHHHHHHHHHCCCCCC-cc
Confidence 4556888864331000000011567999999999999999876665532110 001123456778888776321 12
Q ss_pred cccCCCcccccchHHHHHHH---Hh-CCcEEEeCCcchh
Q psy10457 193 RLIGGKRLVCYDDRFILRLA---AD-TDGIVVSNDNYRD 227 (508)
Q Consensus 193 r~v~Gkr~~syDDryILklA---~e-~dGvIVSNDnYRD 227 (508)
....|.......-..+.++. .. -+|++++||.+-=
T Consensus 212 ~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~nD~~Al 250 (333)
T COG1609 212 WIVEGDFSEESGYEAAERLLARGEPRPTAIFCANDLMAL 250 (333)
T ss_pred eEEecCCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHH
Confidence 21222111111112223333 22 5799999999844
No 49
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=51.68 E-value=31 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHhhCCCHHHHHHHHH------------------HhCCCCChHHHHHHHHhcC
Q psy10457 54 VDFALKLGYTEDLVQTALN------------------KLGPNPSHNELLAELIKLG 91 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~------------------klg~~~~~n~~l~Eliklg 91 (508)
-++|++|||++.+|..+=. +-|.++..+.|++-|.++|
T Consensus 22 k~Lar~LGls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~ 77 (86)
T cd08318 22 KTLAPHLEMKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQATPETLITALNAAG 77 (86)
T ss_pred HHHHHHcCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHHcC
Confidence 3689999999998876542 3355555555555555554
No 50
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=51.42 E-value=30 Score=29.65 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=26.5
Q ss_pred HHHHHHhhCCCHHHHHHHHH------------------HhCC-CCChHHHHHHHHhcC
Q psy10457 53 RVDFALKLGYTEDLVQTALN------------------KLGP-NPSHNELLAELIKLG 91 (508)
Q Consensus 53 ~~~f~~klgy~~~~v~~~l~------------------klg~-~~~~n~~l~Eliklg 91 (508)
=.+|++|||.|+.+|..+-. +-|. ++..+.|++-|-+++
T Consensus 14 wk~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr~~~ 71 (80)
T cd08313 14 WKEFVRRLGLSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATLQHLLSVLRDME 71 (80)
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHcC
Confidence 35799999999988876532 3453 666666666665554
No 51
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=51.35 E-value=25 Score=34.25 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=30.2
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCC--CCChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGP--NPSHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~--~~~~n~~l~Elik 89 (508)
..-++....|||+..++..|+.++.. +.+..+++.+.+|
T Consensus 148 ~e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~aLk 188 (191)
T TIGR00084 148 DELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEALK 188 (191)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 45567888999999999999999854 4566677666554
No 52
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=50.60 E-value=26 Score=28.10 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=29.2
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHH
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELI 88 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Eli 88 (508)
..---|++|||-|++++..+...-|++ ..+|-.+|-
T Consensus 21 ~ev~ywa~~~gvt~~~L~~AV~~vG~~--~~~V~~~L~ 56 (57)
T PF12244_consen 21 YEVRYWAKRFGVTEEQLREAVRAVGNS--RAAVRAYLG 56 (57)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHCcC--HHHHHHHHc
Confidence 344568999999999999999999976 667766663
No 53
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=50.30 E-value=32 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=25.9
Q ss_pred HHHHHhhCCCHHHHHHHHH-------------------HhCCCCChHHHHHHHHhcC
Q psy10457 54 VDFALKLGYTEDLVQTALN-------------------KLGPNPSHNELLAELIKLG 91 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~-------------------klg~~~~~n~~l~Eliklg 91 (508)
.+||++||||+.+|..+-. +-|.++..+.|++-|.+++
T Consensus 19 k~LAr~Lg~se~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~i~ 75 (84)
T cd08804 19 TELARELDFTEEQIHQIRIENPNSLQDQSHALLKYWLERDGKHATDTNLMKCLTKIN 75 (84)
T ss_pred HHHHHHcCCCHHHHHHHHHHCcccHHHHHHHHHHHHHHccCCCchHHHHHHHHHHcC
Confidence 4799999999999887433 3455555556666665554
No 54
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=50.13 E-value=29 Score=29.57 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.1
Q ss_pred HHHHHhhCCCHHHHHHHHH
Q psy10457 54 VDFALKLGYTEDLVQTALN 72 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~ 72 (508)
.+|+++||+|+.+|..+-.
T Consensus 17 k~laR~LGlse~~Id~i~~ 35 (86)
T cd08306 17 RKLARKLGLSETKIESIEE 35 (86)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 4699999999988876543
No 55
>PLN02187 rooty/superroot1
Probab=50.09 E-value=59 Score=35.15 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=70.3
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccc------cC-C-------C-CCCCChHHHHHHHHH
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKE------SC-R-------P-DNLIKNQEVLSELEK 183 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~------~~-r-------~-d~~i~d~~iL~eL~k 183 (508)
||-.||.+..| +-.+|.+++..|.+.|- .|+|..|.|-.- .+ + + +...-|.+.|+++.+
T Consensus 129 ~~~~~I~it~G-----~~~al~~~~~~l~~pGd-~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAG-----CNQGIEIVFESLARPNA-NILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCC-----HHHHHHHHHHHhcCCCC-EEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 45666666666 34577788888877785 466777765311 00 0 0 111223455655543
Q ss_pred C--CcEEec-CCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhcC---hhHHHHHhc-c-eeeeEEeCC
Q psy10457 184 D--RILVYT-PSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLES---PDFRKVVED-R-ILMYSFVND 251 (508)
Q Consensus 184 ~--g~Lv~T-PSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E~---Pe~K~~Iee-R-lL~YTFvgD 251 (508)
. ..++++ |. +.-|.-+ +.++ .-|+++|.+.|.+||+-|=|.|+.... ..+..+... + ++.+||...
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~ 277 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKG 277 (462)
T ss_pred CCcEEEEEeCCC-CCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhh
Confidence 2 344444 43 4555433 2333 357889999999999999999987532 234444332 2 334555543
No 56
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=49.40 E-value=31 Score=33.82 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=29.7
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHh---CCCCChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKL---GPNPSHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~kl---g~~~~~n~~l~Elik 89 (508)
..-++-..-|||+..++..|+.++ .++.+..+++.+.+|
T Consensus 153 ~ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aLk 194 (197)
T PRK14603 153 EDAVLALLALGFREAQVRSVVAELLAQNPEASAQTLIRKALK 194 (197)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445677789999999999999998 334566677766655
No 57
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=49.15 E-value=84 Score=33.03 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=58.0
Q ss_pred chhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEeccccc------ccC-C-----CCCCCChHHHHHHHHHC--CcEE
Q psy10457 123 NVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRK------ESC-R-----PDNLIKNQEVLSELEKD--RILV 188 (508)
Q Consensus 123 NVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk------~~~-r-----~d~~i~d~~iL~eL~k~--g~Lv 188 (508)
||....| +..+|.+++..|.+.|- .|+|..|.|.. ..+ + .+..--+.+.|+++.+. +.|+
T Consensus 143 ~Iiit~G-----~~~al~~~~~~l~~pgd-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~~~k~i~ 216 (431)
T PRK15481 143 EIDLTSG-----AIDAIERLLCAHLLPGD-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQGARAVI 216 (431)
T ss_pred eEEEecC-----cHHHHHHHHHHhCCCCC-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHHhcCCCEEE
Confidence 5555555 34567777888877885 46777776521 011 0 01111234555554333 4567
Q ss_pred ecCCc-ccCCCcccccch-HHHHHHHHhC-CcEEEeCCcchhhhh
Q psy10457 189 YTPSR-LIGGKRLVCYDD-RFILRLAADT-DGIVVSNDNYRDLCL 230 (508)
Q Consensus 189 ~TPSr-~v~Gkr~~syDD-ryILklA~e~-dGvIVSNDnYRD~~~ 230 (508)
++|+- +.-|.-+. .+. .-|+++|.+. |.+||+.|=|.|+..
T Consensus 217 ~~p~p~NPTG~~~s-~~~~~~l~~la~~~~~~~ii~De~Y~~~~~ 260 (431)
T PRK15481 217 LTPRAHNPTGCSLS-ARRAAALRNLLARYPQVLVIIDDHFALLSS 260 (431)
T ss_pred ECCCCCCCCCccCC-HHHHHHHHHHHHhcCCceEEecCchhhhcc
Confidence 76532 23333221 121 3888999999 889999999999864
No 58
>PF13470 PIN_3: PIN domain
Probab=49.12 E-value=18 Score=30.87 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred ccccchHHHHHHHHhCCc-EEEeCCc
Q psy10457 200 LVCYDDRFILRLAADTDG-IVVSNDN 224 (508)
Q Consensus 200 ~~syDDryILklA~e~dG-vIVSNDn 224 (508)
....+|..++..|...++ +|||+|.
T Consensus 93 ~~D~~D~~~la~A~~~~ad~iVT~D~ 118 (119)
T PF13470_consen 93 CRDPDDAHVLAAAIAAKADYIVTGDK 118 (119)
T ss_pred CCCccHHHHHHHHHHcCCCEEEeCCC
Confidence 457899999999999987 8999985
No 59
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=49.05 E-value=28 Score=33.90 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=30.4
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCC-CCChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGP-NPSHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~-~~~~n~~l~Elik 89 (508)
..-++-...|||+..++..|+.++.. +.+..+++.+-+|
T Consensus 144 ~e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lik~ALk 183 (188)
T PRK14606 144 HESLEALVSLGYPEKQAREAVKHVYREGMKTSELIKEALK 183 (188)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34567778999999999999999954 5566777766665
No 60
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=47.04 E-value=15 Score=34.47 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=31.6
Q ss_pred ccchHHHHHHHHhCC-cEEEeCCcchhhhhcChhHHHHHhcceeeeEEeC
Q psy10457 202 CYDDRFILRLAADTD-GIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVN 250 (508)
Q Consensus 202 syDDryILklA~e~d-GvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvg 250 (508)
.|.|.-|+++|.+.| .+|.|||. ++|+-+.+.=|+--+..
T Consensus 84 ~~aDe~i~~~a~~~~~~iVaTnD~---------eLk~rlr~~GIPvi~lr 124 (136)
T COG1412 84 RYADECLLEAALKHGRYIVATNDK---------ELKRRLRENGIPVITLR 124 (136)
T ss_pred CChHHHHHHHHHHcCCEEEEeCCH---------HHHHHHHHcCCCEEEEe
Confidence 688999999999999 89999995 46666666666655553
No 61
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=46.54 E-value=34 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=23.1
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhCCC
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLGPN 77 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg~~ 77 (508)
+..+|+-....||+.+++..+|.+-|-+
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n 29 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGN 29 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 4577888899999999999999998754
No 62
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=46.10 E-value=7.4 Score=29.07 Aligned_cols=26 Identities=38% Similarity=1.002 Sum_probs=17.9
Q ss_pred CCCCCCCCcccCCCcccccCCCCCCCC
Q psy10457 281 GAPCPYGRKCTYGSKCKFNHPERGPWP 307 (508)
Q Consensus 281 ~~~cpy~~kctyg~kck~~hp~r~~~~ 307 (508)
-|||||..-|--| .|-|.--|.|++.
T Consensus 8 gQPCPyne~CCs~-sct~k~NeNGntV 33 (37)
T PF06357_consen 8 GQPCPYNESCCSG-SCTYKTNENGNTV 33 (37)
T ss_dssp TSB-SSCCCBSSS--EEEEE-SSS-EE
T ss_pred CCcCCCCcccccc-cceeecccCCcee
Confidence 5899999999877 7888877777654
No 63
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=45.58 E-value=24 Score=29.50 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.3
Q ss_pred cchhhHHHHHHhhCCCHHHHHHHHHHhCC
Q psy10457 48 PGYSARVDFALKLGYTEDLVQTALNKLGP 76 (508)
Q Consensus 48 ~~~~~~~~f~~klgy~~~~v~~~l~klg~ 76 (508)
+...+-+|.++-|||++.+|..||.+|=.
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~ 37 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLK 37 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44667789999999999999999987733
No 64
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=45.38 E-value=36 Score=29.73 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=12.1
Q ss_pred HHHHHHcCCceEEEEe
Q psy10457 143 VDWFRARGHKEITVFV 158 (508)
Q Consensus 143 V~yF~~RGh~~VvVFV 158 (508)
|+||.++||+.|..+.
T Consensus 1 ~~~L~~~G~r~i~~i~ 16 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIG 16 (160)
T ss_dssp HHHHHHTT-SSEEEEE
T ss_pred ChHHHHCCCCeEEEEe
Confidence 6899999999875554
No 65
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=45.35 E-value=39 Score=33.25 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=29.9
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhC---CCCChHHHHHHHHhc
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKLG---PNPSHNELLAELIKL 90 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~klg---~~~~~n~~l~Elikl 90 (508)
.-++-..-|||+..++..|+.++- ++.+..+++.+.+|.
T Consensus 157 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk~ 198 (203)
T PRK14602 157 DALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRAALKA 198 (203)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 445667899999999999999983 355677777776663
No 66
>PRK06290 aspartate aminotransferase; Provisional
Probab=43.20 E-value=78 Score=33.48 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=60.2
Q ss_pred Eecc-chhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEeccccc--c----cC-C-----CC---CCCChHHHHHHHH
Q psy10457 119 IDGS-NVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRK--E----SC-R-----PD---NLIKNQEVLSELE 182 (508)
Q Consensus 119 IDGS-NVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk--~----~~-r-----~d---~~i~d~~iL~eL~ 182 (508)
||.. ||....|. -.+|..++..|...|- .|+|..|.|-. . .+ + .+ ....+.+.|.+..
T Consensus 103 ~~~~~~I~it~Gs-----~~al~~~~~~~~~~gd-~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~ 176 (410)
T PRK06290 103 IDPVTEVIHSIGS-----KPALAMLPSCFINPGD-VTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDI 176 (410)
T ss_pred CCCcceEEEccCH-----HHHHHHHHHHhCCCCC-EEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhh
Confidence 4554 57766662 3456666777766674 35666666521 0 00 0 00 1112334444332
Q ss_pred --HCCcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 183 --KDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 183 --k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+-.+|+++...+.-|.-+....=.-|+++|.+.|.+||+-|=|.|+..+
T Consensus 177 ~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~ 227 (410)
T PRK06290 177 KEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFD 227 (410)
T ss_pred cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeC
Confidence 3356777723445554432111257789999999999999999998653
No 67
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=43.13 E-value=40 Score=32.89 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=29.7
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Elik 89 (508)
..-++-...|||+..++..|+.++. +.+..+++.+-++
T Consensus 143 ~ea~~AL~~LGy~~~ea~~a~~~~~-~~~~eelir~aLk 180 (183)
T PRK14601 143 SEALAALLTLGFKQEKIIKVLASCQ-STGTSELIKEALK 180 (183)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcc-cCCHHHHHHHHHH
Confidence 3456788899999999999999994 5566666666554
No 68
>PRK08960 hypothetical protein; Provisional
Probab=43.11 E-value=79 Score=32.58 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=53.5
Q ss_pred eccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEeccccc------ccC--------CCC-CCCChHHHHHHHHHC
Q psy10457 120 DGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRK------ESC--------RPD-NLIKNQEVLSELEKD 184 (508)
Q Consensus 120 DGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk------~~~--------r~d-~~i~d~~iL~eL~k~ 184 (508)
|-.||.+..|. -.+|..++..|...|- .|+|..|.|.. ..+ ..+ ...-+.+.|+++.+.
T Consensus 91 ~~~~i~it~G~-----~~al~~~~~~~~~~gd-~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (387)
T PRK08960 91 DPERILVTPGG-----SGALLLASSLLVDPGK-HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA 164 (387)
T ss_pred ChhhEEEccCc-----HHHHHHHHHHhcCCCC-EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc
Confidence 33445555552 3455566666666664 35666665421 000 001 011234455554332
Q ss_pred --CcEEecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 185 --RILVYTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 185 --g~Lv~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~ 230 (508)
.+++++...+.-|..+. .++. -|+++|.+.|.+||.-|-|.|+..
T Consensus 165 ~~~~i~i~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~li~De~Y~~~~~ 212 (387)
T PRK08960 165 DTVGALVASPANPTGTLLS-RDELAALSQALRARGGHLVVDEIYHGLTY 212 (387)
T ss_pred cceEEEEECCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 33344322345554432 2232 466788999999999999988764
No 69
>PRK08354 putative aminotransferase; Provisional
Probab=43.09 E-value=82 Score=31.59 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCceEEEEecccccc--c-----CCCCCCCChHHHHHHHHH-CCcEEec-CCcccCCCcccccch-HH
Q psy10457 138 GIKICVDWFRARGHKEITVFVPKWRKE--S-----CRPDNLIKNQEVLSELEK-DRILVYT-PSRLIGGKRLVCYDD-RF 207 (508)
Q Consensus 138 GI~iAV~yF~~RGh~~VvVFVP~~Rk~--~-----~r~d~~i~d~~iL~eL~k-~g~Lv~T-PSr~v~Gkr~~syDD-ry 207 (508)
+|.+++..+. .|- .|+|..|.|..- . .+......+.+.|+++.+ ...++++ |. +.-|.-+ +.++ .-
T Consensus 66 al~~~~~~~~-~gd-~vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~vi~~~P~-NPTG~~~-~~~~l~~ 141 (311)
T PRK08354 66 ALYLIGILAL-RDR-KVIIPRHTYGEYERVARFFAARIIKGPNDPEKLEELVERNSVVFFCNPN-NPDGKFY-NFKELKP 141 (311)
T ss_pred HHHHHHHhhC-CCC-eEEEeCCCcHHHHHHHHHcCCEEeecCCCHHHHHHhhcCCCEEEEecCC-CCCCCcc-CHHHHHH
Confidence 3444444343 675 367777776211 0 000001124455555433 3445553 53 4555433 3333 35
Q ss_pred HHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 208 ILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 208 ILklA~e~dGvIVSNDnYRD~~~E 231 (508)
|++.|.+.|..||.-|-|.|+..+
T Consensus 142 l~~~a~~~~~~li~De~y~~f~~~ 165 (311)
T PRK08354 142 LLDAVEDRNALLILDEAFIDFVKK 165 (311)
T ss_pred HHHHhhhcCcEEEEeCcchhcccc
Confidence 678888999999999999998764
No 70
>PLN02231 alanine transaminase
Probab=42.82 E-value=81 Score=35.08 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=61.8
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHH-cCCceEEEEecccccc-------cC-------CC-CCCCChHHHHHHHH
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRA-RGHKEITVFVPKWRKE-------SC-------RP-DNLIKNQEVLSELE 182 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~-RGh~~VvVFVP~~Rk~-------~~-------r~-d~~i~d~~iL~eL~ 182 (508)
+|-.||....| +-.+|..++..|.. .|- .|+|..|.|-.- .. .. +...-|.+.|++..
T Consensus 189 ~~pe~I~iT~G-----a~~ai~~~~~~l~~~~gd-~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l 262 (534)
T PLN02231 189 ADPNDIFLTDG-----ASPAVHMMMQLLIRSEKD-GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQL 262 (534)
T ss_pred CCcccEEEeCC-----HHHHHHHHHHHhccCCCC-EEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHH
Confidence 45556666666 24567777777764 565 477777776211 00 00 11123455565544
Q ss_pred HC--------CcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 183 KD--------RILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 183 k~--------g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
+. ..|++....+.-|.-+ +.++ .-|+++|.++|.+||+-|=|.|+..
T Consensus 263 ~~~~~~~~~~k~ivl~nP~NPTG~vl-s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y 318 (534)
T PLN02231 263 EDARSKGITVRALVVINPGNPTGQVL-AEENQRDIVEFCKQEGLVLLADEVYQENVY 318 (534)
T ss_pred HHHhhcCCCeEEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 32 2234443344555433 3343 4788999999999999999999876
No 71
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=42.75 E-value=37 Score=33.79 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHHcCCce-EEEEecccccccCCCCCCCCh--HHHHHHHHHCCcEEecCCcccCCCcccccchHH-HH-
Q psy10457 135 SCIGIKICVDWFRARGHKE-ITVFVPKWRKESCRPDNLIKN--QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRF-IL- 209 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~-VvVFVP~~Rk~~~r~d~~i~d--~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDry-IL- 209 (508)
+..+...|++|+.++||+. |.++.-.-.. ....+ .-+...|.+.|+ -+-+.....|. .++.+-| ++
T Consensus 102 ~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~------~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~--~~~~~g~~~~~ 172 (279)
T PF00532_consen 102 NYEAGYEATEYLIKKGHRRPIAFIGGPEDS------STSRERLQGYRDALKEAGL-PIDEEWIFEGD--FDYESGYEAAR 172 (279)
T ss_dssp HHHHHHHHHHHHHHTTCCSTEEEEEESTTT------HHHHHHHHHHHHHHHHTTS-CEEEEEEEESS--SSHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcccCCeEEEEecCcch------HHHHHHHHHHHHHHHHcCC-CCCcccccccC--CCHHHHHHHHH
Confidence 4567889999999999999 7444321110 00111 235678888888 00001101110 1223333 11
Q ss_pred HHHH---hCCcEEEeCCcchh
Q psy10457 210 RLAA---DTDGIVVSNDNYRD 227 (508)
Q Consensus 210 klA~---e~dGvIVSNDnYRD 227 (508)
++-. +.+|+|.+||.+--
T Consensus 173 ~ll~~~p~idai~~~nd~~A~ 193 (279)
T PF00532_consen 173 ELLESHPDIDAIFCANDMMAI 193 (279)
T ss_dssp HHHHTSTT-SEEEESSHHHHH
T ss_pred HHHhhCCCCEEEEEeCHHHHH
Confidence 2212 23499999999854
No 72
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=42.23 E-value=39 Score=33.59 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=30.6
Q ss_pred HHHHHhhCCCHHHHHHHHHHhCC---CCChHHHHHHHHh
Q psy10457 54 VDFALKLGYTEDLVQTALNKLGP---NPSHNELLAELIK 89 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~klg~---~~~~n~~l~Elik 89 (508)
++-..-|||++.|++.|+.++-. +.+..+++.|.+|
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik~aLk 198 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELIKEALK 198 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 78888999999999999999875 5777777777766
No 73
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=41.98 E-value=53 Score=26.24 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=16.2
Q ss_pred HHHHHhhCCCHHHHHHHHHHh
Q psy10457 54 VDFALKLGYTEDLVQTALNKL 74 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~kl 74 (508)
.+||++|||++.+|..+-..-
T Consensus 14 ~~la~~Lgl~~~~I~~i~~~~ 34 (79)
T cd01670 14 KKLARKLGLSDGEIDQIEEDN 34 (79)
T ss_pred HHHHHHhCCCHHHHHHHHHhC
Confidence 469999999999887765443
No 74
>PRK07324 transaminase; Validated
Probab=41.80 E-value=83 Score=32.55 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=33.6
Q ss_pred hHHHHHHHHH--CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELEK--DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~k--~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
|.+.|.++.. -++|+++...+.-|.-+ +.++ .-|+++|.+.|.+||.-|-|+++...
T Consensus 142 d~~~l~~~~~~~~kli~i~~p~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~ 201 (373)
T PRK07324 142 DLDELRRLVRPNTKLICINNANNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDED 201 (373)
T ss_pred CHHHHHHhCCCCCcEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccC
Confidence 3444555432 23455442222333222 2223 35778899999999999999998764
No 75
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=41.23 E-value=79 Score=27.29 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=56.4
Q ss_pred EEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccC
Q psy10457 117 VVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIG 196 (508)
Q Consensus 117 IVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~ 196 (508)
|++|.-=|-| .|+ --+.|...+|++++++|.+ ++|+-+ +...+..++..+|.+.|+- +++.
T Consensus 1 ~l~D~dGvl~-~g~---~~ipga~e~l~~L~~~g~~--~~~lTN--------ns~~s~~~~~~~L~~~Gi~-~~~~---- 61 (101)
T PF13344_consen 1 FLFDLDGVLY-NGN---EPIPGAVEALDALRERGKP--VVFLTN--------NSSRSREEYAKKLKKLGIP-VDED---- 61 (101)
T ss_dssp EEEESTTTSE-ETT---EE-TTHHHHHHHHHHTTSE--EEEEES---------SSS-HHHHHHHHHHTTTT---GG----
T ss_pred CEEeCccEeE-eCC---CcCcCHHHHHHHHHHcCCC--EEEEeC--------CCCCCHHHHHHHHHhcCcC-CCcC----
Confidence 3445444544 333 2478889999999999985 456543 1123457888999999964 3343
Q ss_pred CCcccccchHHHHHHHHhC---CcEEEeCCcchhhhh
Q psy10457 197 GKRLVCYDDRFILRLAADT---DGIVVSNDNYRDLCL 230 (508)
Q Consensus 197 Gkr~~syDDryILklA~e~---dGvIVSNDnYRD~~~ 230 (508)
.+.+..+.....++... ...||..+..++...
T Consensus 62 --~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~~l~ 96 (101)
T PF13344_consen 62 --EIITSGMAAAEYLKEHKGGKKVYVLGSDGLREELR 96 (101)
T ss_dssp --GEEEHHHHHHHHHHHHTTSSEEEEES-HHHHHHHH
T ss_pred --EEEChHHHHHHHHHhcCCCCEEEEEcCHHHHHHHH
Confidence 35567777777777733 335677777766554
No 76
>PRK06348 aspartate aminotransferase; Provisional
Probab=40.86 E-value=1e+02 Score=31.89 Aligned_cols=106 Identities=17% Similarity=0.326 Sum_probs=57.2
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccc--c----ccC-C-------C-CCCCChHHHHHHHH-
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWR--K----ESC-R-------P-DNLIKNQEVLSELE- 182 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~R--k----~~~-r-------~-d~~i~d~~iL~eL~- 182 (508)
+|..||....| +..+|.+++.-|...|- .|+|..|.|. . ..+ + . +...-+.+.|+++.
T Consensus 87 ~~~~~i~it~G-----~~~al~~~~~~~~~~gd-~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVG-----ACHGMYLALQSILDPGD-EVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCC-----hHHHHHHHHHHhcCCCC-EEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 44555555555 24466666666666664 3555556542 0 000 0 0 11112345555543
Q ss_pred -HCCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 183 -KDRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 183 -k~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+.+.|+++...+.-|.-+ +.++ .-|+++|.+.|.+||.-|=|.|+...
T Consensus 161 ~~~~~v~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 210 (384)
T PRK06348 161 SKTKAIILNSPNNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFY 210 (384)
T ss_pred cCccEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeC
Confidence 234454442233445433 3444 35779999999999999999998754
No 77
>PRK08636 aspartate aminotransferase; Provisional
Probab=40.28 E-value=74 Score=33.12 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=57.0
Q ss_pred Eecc-chhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccc------cC-------C-CC--CCCChHHH---H
Q psy10457 119 IDGS-NVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKE------SC-------R-PD--NLIKNQEV---L 178 (508)
Q Consensus 119 IDGS-NVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~------~~-------r-~d--~~i~d~~i---L 178 (508)
+|.. ||.+..|. ..+|.+++..|.+.|- .|+|..|.|-.- .+ . .+ ..++...+ |
T Consensus 92 ~~~~~~I~it~G~-----~~al~~~~~~l~~~gd-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 165 (403)
T PRK08636 92 LDPETEVVATMGS-----KEGYVHLVQAITNPGD-VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENL 165 (403)
T ss_pred CCCCCeEEECCCh-----HHHHHHHHHHhCCCCC-EEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHH
Confidence 4444 56666662 4466666776766664 355555554210 00 0 00 12222222 3
Q ss_pred HHHH-----HCCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 179 SELE-----KDRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 179 ~eL~-----k~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+++. +-.+|+++...+.-|.-+ +.+. .-|+++|.+.|.+||..|=|+|+..+
T Consensus 166 ~~~~~~~~~~~~~i~~~~P~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~ 223 (403)
T PRK08636 166 EKALRESSPKPKYVVVNFPHNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFD 223 (403)
T ss_pred HHHHhhccCCceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccC
Confidence 3333 233455552234444333 3333 36789999999999999999998653
No 78
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=40.26 E-value=1.2e+02 Score=30.64 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCcEEEeccchhhhcCC---CCc----------------------cchHHHHHHHHHHHHcCCceEEEEec
Q psy10457 112 AKLRPVVIDGSNVAMSHGN---KEL----------------------FSCIGIKICVDWFRARGHKEITVFVP 159 (508)
Q Consensus 112 ~~lRpIVIDGSNVAmshG~---~k~----------------------FS~rGI~iAV~yF~~RGh~~VvVFVP 159 (508)
-.-+.++|||-||..+--. ++. -.-+.|.+.++|+++-+-+.++.+..
T Consensus 64 ~rg~~l~iDGyNvLItleSl~~g~~vlcdDg~iRDl~~~~gkyk~~E~t~~Al~lil~~lk~~~~k~vi~L~d 136 (211)
T COG2454 64 LRGQDLVIDGYNVLITLESLLKGEAVLCDDGVIRDLRGVQGKYKINEKTDKALDLLLEFLKDVEPKSVIFLFD 136 (211)
T ss_pred cccceEEEechhhhhhHHHHhcCcEEEecCchhhhhhhhccchhhhhHHHHHHHHHHHHHHHcCCceEEEEeC
Confidence 3445799999999764210 011 13357788899999999987655543
No 79
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=39.49 E-value=62 Score=25.85 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=24.1
Q ss_pred HHHHHhhCCCHHHHHHHHHH------------------hCCCCChHHHHHHHHhcC
Q psy10457 54 VDFALKLGYTEDLVQTALNK------------------LGPNPSHNELLAELIKLG 91 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~k------------------lg~~~~~n~~l~Eliklg 91 (508)
-.||.+||++..+|..+-.. -|+++..+.|+.=|.+++
T Consensus 16 k~La~~Lg~~~~~i~~i~~~~~~~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~ 71 (83)
T PF00531_consen 16 KRLARKLGLSESEIENIEEENPDLREQTYEMLQRWRQREGPNATVDQLIQALRDIG 71 (83)
T ss_dssp HHHHHHTTS-HHHHHHHHHHSTSHHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCC
Confidence 46889999988877665443 355666666666665554
No 80
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=39.42 E-value=50 Score=30.54 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=10.9
Q ss_pred chHHHHHHHHhCCcEEEeCCc
Q psy10457 204 DDRFILRLAADTDGIVVSNDN 224 (508)
Q Consensus 204 DDryILklA~e~dGvIVSNDn 224 (508)
+|..|+++|.+.+-+|||.|.
T Consensus 30 ~D~~il~~A~~e~RillTrd~ 50 (147)
T PF01927_consen 30 DDDEILELAREEGRILLTRDR 50 (147)
T ss_pred ChHHHHHHhhhCCeEEEECCH
Confidence 455555555555555555543
No 81
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=38.96 E-value=2.5e+02 Score=30.00 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHHHcCCceEEEEeccc---ccccC-CCCCCCChHHHHHHHHHCC---cEEecCC-ccc----CCCcccc
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKW---RKESC-RPDNLIKNQEVLSELEKDR---ILVYTPS-RLI----GGKRLVC 202 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~---Rk~~~-r~d~~i~d~~iL~eL~k~g---~Lv~TPS-r~v----~Gkr~~s 202 (508)
++=-+.+.++.++.-|.+.|++++|-+ |.... ++..+++-+-+.+.|...| +|.+-.- ..+ +..--.-
T Consensus 67 ~lmELLi~idA~k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl 146 (314)
T COG0462 67 NLMELLIMIDALKRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNL 146 (314)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccc
Confidence 366788899999999999999999976 33322 3445677777777777654 3443332 112 2222334
Q ss_pred cchHHHHHHHHhC----CcEEEeCCc
Q psy10457 203 YDDRFILRLAADT----DGIVVSNDN 224 (508)
Q Consensus 203 yDDryILklA~e~----dGvIVSNDn 224 (508)
|..+.+.++-.+. |.+|||=|.
T Consensus 147 ~a~p~l~~~~~~~~~~~d~vVVSPD~ 172 (314)
T COG0462 147 YAAPLLAEYIREKYDLDDPVVVSPDK 172 (314)
T ss_pred cchHHHHHHHHHhcCCCCcEEECCCc
Confidence 6788888888887 789999875
No 82
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=38.96 E-value=24 Score=33.10 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhCCcEEEeCCcc
Q psy10457 202 CYDDRFILRLAADTDGIVVSNDNY 225 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSNDnY 225 (508)
.-+|.++|.+|...|++|||....
T Consensus 103 ~~ADp~LIA~A~~~~~~VVT~E~~ 126 (162)
T PF14367_consen 103 SVADPWLIAYAKAYGATVVTHEVS 126 (162)
T ss_pred ccCCHHHHHHHHhcCCEEEccCCC
Confidence 568999999999999999999887
No 83
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=38.23 E-value=1e+02 Score=32.89 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=61.2
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEeccccc--cc-----C-------CC-CCCCChHHHHHHHHH
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRK--ES-----C-------RP-DNLIKNQEVLSELEK 183 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk--~~-----~-------r~-d~~i~d~~iL~eL~k 183 (508)
||-.||.+..| +..+|.+++..|...|-+ |++..|.|.. .. . .+ +...-|.+.|+++.+
T Consensus 115 ~~~~~v~it~G-----~~~al~l~~~~l~~~Gd~-Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAG-----CAQAIEIIMSVLAQPGAN-ILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCC-----HHHHHHHHHHHhcCCCCE-EEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 45556666666 345677788888777753 6666666531 00 0 00 111124455666643
Q ss_pred ---CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 184 ---DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 184 ---~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
..+++..|+ +.-|. +.+.++ .-|+++|.+.|.+||+-|-|.++..+
T Consensus 189 ~~~~~i~i~~P~-NPtG~-v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~ 238 (430)
T PLN00145 189 ENTVAMVIINPN-NPCGS-VYSYEHLAKIAETARKLGILVIADEVYDHLTFG 238 (430)
T ss_pred cCceEEEEeCCC-CCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccchhhccC
Confidence 233444453 44453 223333 35788999999999999999887653
No 84
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=38.00 E-value=7.3e+02 Score=30.22 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=49.2
Q ss_pred HHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHhcCCCCCCCCcC---C------------CCCCCCCCCCCCCCcEE
Q psy10457 54 VDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQ---D------------NEQDCMPYPQAKLRPVV 118 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Eliklg~~~~~~~~~---~------------~~~~~~~~~~~~lRpIV 118 (508)
+..|+++|||..+|...+ +....+|-.--.+++..+..+.++ + -+..........-+.+|
T Consensus 485 ~~~~k~~g~~d~~~a~~~-----~~~~~~~~~~~~~~~~~~~~k~~d~~a~e~~~~~~~~y~~~~~~~~~~~~~~kkvli 559 (1066)
T PRK05294 485 LREAKRLGFSDARIAKLL-----GVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPSDRKKVLV 559 (1066)
T ss_pred HHHHHHcCCCHHHHHHHh-----CcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCcceeECCCCCCCccCCCceEEE
Confidence 456777888888887765 233444443333444443323221 1 01011111223334556
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEec
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVP 159 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP 159 (508)
|.+...-...| ..|+.-.+ -+++.+++.|++ ++++..
T Consensus 560 lG~G~~~ig~~--~efdy~~v-~~i~alk~~G~~-vi~v~~ 596 (1066)
T PRK05294 560 LGSGPNRIGQG--IEFDYCCV-HAVLALREAGYE-TIMVNC 596 (1066)
T ss_pred ECccccccccc--cccchhHH-HHHHHHHHCCCE-EEEEeC
Confidence 65444332233 45766555 456889999997 455553
No 85
>PLN02368 alanine transaminase
Probab=37.77 E-value=1.1e+02 Score=32.72 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=62.0
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHH-HcCCceEEEEecccccc------cC-C-------C-CCCCChHHHHHHHH
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFR-ARGHKEITVFVPKWRKE------SC-R-------P-DNLIKNQEVLSELE 182 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~-~RGh~~VvVFVP~~Rk~------~~-r-------~-d~~i~d~~iL~eL~ 182 (508)
+|-.||....|. ..+|..++..+. ..|- .|++..|.|-.- .+ + . +...-+.+.|++..
T Consensus 128 ~~~~~I~it~Ga-----~~al~~~~~~l~~~pGd-~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i 201 (407)
T PLN02368 128 SDPELIFLTDGA-----SKGVMQILNAVIRGEKD-GVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSV 201 (407)
T ss_pred CChhhEEEcccH-----HHHHHHHHHHHcCCCCC-EEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHH
Confidence 566677766663 446777777776 4675 477777876310 00 0 0 01112345555543
Q ss_pred HC--------C-cEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 183 KD--------R-ILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 183 k~--------g-~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
+. + +++.+| .+.-|.-+ +.+. .-|+++|.+.|.+||+-|=|.|+..
T Consensus 202 ~~~~~~~~~~k~l~l~nP-~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y 257 (407)
T PLN02368 202 AQARSKGITVRAMVIINP-GNPTGQCL-SEANLREILKFCYQERLVLLGDEVYQQNIY 257 (407)
T ss_pred HHHhhcCCCeEEEEEECC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 31 2 455556 34555433 3444 3678899999999999999999885
No 86
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=37.39 E-value=1.4e+02 Score=30.93 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=34.4
Q ss_pred HHHHHHHHH--CCcEEecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 175 QEVLSELEK--DRILVYTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 175 ~~iL~eL~k--~g~Lv~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.+.|.++.+ .++|+++...+.-|.-+ +.+++ -|+++|.+.|.+||.-|=|.|+...
T Consensus 158 ~~~l~~~~~~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 216 (401)
T TIGR01264 158 LKQLESLIDEKTAALIVNNPSNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFS 216 (401)
T ss_pred HHHHHHHhccCceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccC
Confidence 344544432 34555543333445332 23333 5778999999999999999998753
No 87
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=35.47 E-value=89 Score=30.67 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHcCCceEEEE
Q psy10457 136 CIGIKICVDWFRARGHKEITVF 157 (508)
Q Consensus 136 ~rGI~iAV~yF~~RGh~~VvVF 157 (508)
..+...|++|+.++||+.|.++
T Consensus 159 ~~~~~~a~~~L~~~G~~~I~~i 180 (327)
T PRK10423 159 LLGGDLATQYLIDKGYTRIACI 180 (327)
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 4678899999999999986544
No 88
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=35.22 E-value=1.2e+02 Score=29.97 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe-cccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV-PKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRL 211 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV-P~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILkl 211 (508)
+..+...+++|+.++||+.|..+- +...... ..-....+.+.+.+.|+-... ..+.. ++++. .+.++
T Consensus 156 ~~~~~~~a~~~L~~~Ghr~I~~i~~~~~~~~~----~~~R~~gf~~a~~~~gi~~~~----~~~~~--~~~~~~~~~~~~ 225 (311)
T TIGR02405 156 DYGAIELLMANLYQQGHRHISFLGVDPSDKTT----GLMRHNAYLAYCESANLEPIY----QTGQL--SHESGYVLTDKV 225 (311)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEccCcccchh----HHHHHHHHHHHHHHcCCCcee----eeCCC--CHHHHHHHHHHH
Confidence 457889999999999999875443 2111000 001123355667777752110 11110 12221 22222
Q ss_pred -HHhCCcEEEeCCcchh
Q psy10457 212 -AADTDGIVVSNDNYRD 227 (508)
Q Consensus 212 -A~e~dGvIVSNDnYRD 227 (508)
..+.+|+|+.||.+--
T Consensus 226 l~~~~tAi~~~~D~~A~ 242 (311)
T TIGR02405 226 LKPETTALVCATDTLAL 242 (311)
T ss_pred HhcCCCEEEECCcHHHH
Confidence 2346899999999854
No 89
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=34.77 E-value=8.6e+02 Score=29.64 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHhcCCCCCCCCcC---C------------CCCC-CCCCCCCCCCcE
Q psy10457 54 VDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQ---D------------NEQD-CMPYPQAKLRPV 117 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Eliklg~~~~~~~~~---~------------~~~~-~~~~~~~~lRpI 117 (508)
+..|+++|||..+|...+. ...++|-.--.+++..+..+.++ + -+.. ... .....+-|
T Consensus 484 ~~~~k~~g~~d~~~a~~~~-----~~~~~~~~~~~~~~~~~~~k~vd~~a~e~~~~~~~~y~~~~~~~~~~-~~~~~~kv 557 (1050)
T TIGR01369 484 LRRAKKLGFSDAQIARLIG-----VTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDV-PFTDKKKV 557 (1050)
T ss_pred HHHHHHcCCCHHHHHHHhC-----cCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCeeEecCCCCCCcc-cCCCCceE
Confidence 4567888888888887652 34555555444555444333222 1 0111 011 11223445
Q ss_pred EEeccch-hhhcCCCCccchHHHHHHHHHHHHcCCceEEEEe
Q psy10457 118 VIDGSNV-AMSHGNKELFSCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 118 VIDGSNV-AmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+|=|+.. -+..| -.|+.-.+.+ ++.+++.|++ ++++.
T Consensus 558 lvlG~G~~rig~~--~efd~~~v~~-i~al~~~G~~-vI~v~ 595 (1050)
T TIGR01369 558 LVLGSGPNRIGQG--VEFDYCCVHA-VLALRELGYE-TIMIN 595 (1050)
T ss_pred EEecCcccccccc--cccchHHHHH-HHHHHhCCCE-EEEEe
Confidence 5555443 23234 3476655554 7889999997 44444
No 90
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=34.27 E-value=83 Score=26.39 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.0
Q ss_pred HHHHHhhCCCHHHHHHHHH
Q psy10457 54 VDFALKLGYTEDLVQTALN 72 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~ 72 (508)
.++|++||+++.+|..+-.
T Consensus 19 ~~LAr~Lg~~~~dI~~i~~ 37 (84)
T cd08317 19 PQLARELGVSETDIDLIKA 37 (84)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 4689999999988776554
No 91
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.19 E-value=62 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=28.9
Q ss_pred hHHHHHHhhCCCHHHHHHHHHH----------------hCCCCChHHHHHHHHhcCC
Q psy10457 52 ARVDFALKLGYTEDLVQTALNK----------------LGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~k----------------lg~~~~~n~~l~Eliklg~ 92 (508)
.=-+|++.||-|+.+|..+=.- -+..++.|.||+-|.++.-
T Consensus 13 ~wk~F~R~LGLsdn~Ie~~E~~~~~~rda~y~ML~~W~~q~~a~~n~Ll~aL~~m~l 69 (77)
T cd08815 13 RWKEFVRTLGLREAEIEAVELEIGRFRDQQYEMLKRWRQQQPAGLDAVYAALERMGL 69 (77)
T ss_pred HHHHHHHHcCCcHhHHHHHHhcccchHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3358999999999888765211 1224788888888887753
No 92
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.19 E-value=66 Score=31.57 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=29.4
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhCC--CCChHHHHHHHHh
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKLGP--NPSHNELLAELIK 89 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~klg~--~~~~n~~l~Elik 89 (508)
.-++-...|||+..+++.|+.++-. +.+..+++.+.++
T Consensus 151 e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~ir~aLk 190 (195)
T PRK14604 151 ELSEILISLGYSAAEAAAAIAALPSDAPPDLEERLRLALR 190 (195)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 4456677899999999999999843 4567777777665
No 93
>PRK09265 aminotransferase AlaT; Validated
Probab=33.64 E-value=1.3e+02 Score=31.26 Aligned_cols=106 Identities=12% Similarity=0.200 Sum_probs=55.8
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEeccccc-------ccCC-----CC---CCCChHHHHHHHHH
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRK-------ESCR-----PD---NLIKNQEVLSELEK 183 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk-------~~~r-----~d---~~i~d~~iL~eL~k 183 (508)
+|-.||.+..|. ..+|.+++..|...|-+ |+|..|.|.. ...+ .+ ...-+.+.|+++..
T Consensus 93 ~~~~~i~~t~G~-----~~~l~~~~~~~~~~gd~-Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 166 (404)
T PRK09265 93 VDVDDIYIGNGV-----SELIVMAMQALLNNGDE-VLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT 166 (404)
T ss_pred CCcccEEEeCCh-----HHHHHHHHHHhCCCCCE-EEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc
Confidence 455566665552 34556666666666643 5555555420 0000 01 01113344554432
Q ss_pred --CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 184 --DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 184 --~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
-++|+++...+.-|..+ +.++ .-|+++|.+.|.+||.-|-|.|+..+
T Consensus 167 ~~~~~v~l~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~ 216 (404)
T PRK09265 167 PRTKAIVIINPNNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYD 216 (404)
T ss_pred ccceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCC
Confidence 23455442233445332 2222 35788999999999999999998653
No 94
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=33.54 E-value=69 Score=27.51 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.2
Q ss_pred HHHHHhhCCCHHHHHHHHH
Q psy10457 54 VDFALKLGYTEDLVQTALN 72 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~ 72 (508)
-+||++||||+.+|..+=.
T Consensus 17 k~lar~LG~s~~eI~~ie~ 35 (86)
T cd08777 17 KRCARKLGFTESEIEEIDH 35 (86)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 4789999999988887643
No 95
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=33.16 E-value=1.1e+02 Score=30.28 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHcCCceEEEE
Q psy10457 136 CIGIKICVDWFRARGHKEITVF 157 (508)
Q Consensus 136 ~rGI~iAV~yF~~RGh~~VvVF 157 (508)
..+...+++||.++||+.|..+
T Consensus 159 ~~~~~~a~~~l~~~G~~~i~~i 180 (327)
T PRK10339 159 ARISKEIIDFYINQGVNRIGFI 180 (327)
T ss_pred HHHHHHHHHHHHHCCCCeEEEe
Confidence 5677899999999999886555
No 96
>KOG1752|consensus
Probab=33.07 E-value=1.2e+02 Score=27.20 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCC--cEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCccc
Q psy10457 178 LSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTD--GIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFM 254 (508)
Q Consensus 178 L~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~d--GvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~Fm 254 (508)
-....+...++|+.+. |..-..+-.+-.+.+ -.||--|+..|...-...+.++--.|-+++-|+|++|+
T Consensus 8 ~~~i~~~~VVifSKs~--------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~i 78 (104)
T KOG1752|consen 8 RKMISENPVVIFSKSS--------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFI 78 (104)
T ss_pred HHHhhcCCEEEEECCc--------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEE
Confidence 3444566777777665 665555555555533 37899998855543223344444478899999999998
No 97
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=32.52 E-value=1.1e+02 Score=30.27 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=57.0
Q ss_pred CCccchH-HHHHHHHHHHHc---CCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH
Q psy10457 131 KELFSCI-GIKICVDWFRAR---GHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR 206 (508)
Q Consensus 131 ~k~FS~r-GI~iAV~yF~~R---Gh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr 206 (508)
.+.||+. ||..|...+... |.++|+|+.-....- | +-+=.+.++.|.++++-+-+=+- +-.=.
T Consensus 77 ~G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~----D-p~di~~ti~~l~~~~IrvsvI~l--------aaEv~ 143 (193)
T PF04056_consen 77 SGEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTC----D-PGDIHETIESLKKENIRVSVISL--------AAEVY 143 (193)
T ss_pred CCChhHHHHHHHHHHHHhhCccccceEEEEEEeecccC----C-chhHHHHHHHHHHcCCEEEEEEE--------hHHHH
Confidence 3457774 888888888744 888998887654432 1 22335678888888875443222 11223
Q ss_pred HHHHHHHhCCc---EEEeCCcchhhhhc
Q psy10457 207 FILRLAADTDG---IVVSNDNYRDLCLE 231 (508)
Q Consensus 207 yILklA~e~dG---vIVSNDnYRD~~~E 231 (508)
.+-++|.++|| |++..+.|+|+..+
T Consensus 144 I~k~i~~~T~G~y~V~lde~H~~~lL~~ 171 (193)
T PF04056_consen 144 ICKKICKETGGTYGVILDEDHFKELLME 171 (193)
T ss_pred HHHHHHHhhCCEEEEecCHHHHHHHHHh
Confidence 56678999998 56667777777665
No 98
>PLN02656 tyrosine transaminase
Probab=32.27 E-value=1.8e+02 Score=30.57 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=34.9
Q ss_pred hHHHHHHHHHC--CcEEecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELEKD--RILVYTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~k~--g~Lv~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E 231 (508)
|.+.|.++.+. ..++++...+.-|.-+ +.++. -|+++|.+.|.+||.-|-|.|+..+
T Consensus 158 d~~~l~~~~~~~~~~v~l~~P~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~ 217 (409)
T PLN02656 158 DLDAVEALADQNTVALVIINPGNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFG 217 (409)
T ss_pred CHHHHHHHhccCceEEEEECCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccC
Confidence 44555555432 3344432233445333 22333 4789999999999999999998764
No 99
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=32.12 E-value=2.2e+02 Score=29.04 Aligned_cols=42 Identities=17% Similarity=0.368 Sum_probs=27.9
Q ss_pred CcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhh
Q psy10457 185 RILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLC 229 (508)
Q Consensus 185 g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~ 229 (508)
++|+++...+.-| ...+-.-+.++|.+.+++||.-|-|.|+.
T Consensus 150 k~v~l~~p~NPtG---~~~~~~~l~~l~~~~~~~~ivDe~y~~~~ 191 (351)
T PRK14807 150 KLVFLCNPNNPTG---SVIEREDIIKIIEKSRGIVVVDEAYFEFY 191 (351)
T ss_pred CEEEEeCCCCCCC---CCCCHHHHHHHHHhCCCEEEEeCcchhhc
Confidence 5566553333444 23455667888888888888888888875
No 100
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=32.04 E-value=2.3e+02 Score=29.00 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=58.2
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccc------c-------CCCCCCCChHHHHHHHHH--
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKE------S-------CRPDNLIKNQEVLSELEK-- 183 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~------~-------~r~d~~i~d~~iL~eL~k-- 183 (508)
||..||....| +..+|..++..|...|-. |++..|.|..- . ...+..--|-+.|.+..+
T Consensus 86 ~~~~~I~it~G-----~~~~l~~~~~~~~~~gd~-v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~ 159 (368)
T PRK03317 86 LTVENVWAANG-----SNEILQQLLQAFGGPGRT-ALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEH 159 (368)
T ss_pred CChhhEEECCC-----HHHHHHHHHHHhcCCCCE-EEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhcc
Confidence 45556665555 345666777777767753 66667765210 0 000111123445555433
Q ss_pred -CCcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 184 -DRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 184 -~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
-++|+++...+.-| .++.-.-+.+++...+++||.-|=|.++..
T Consensus 160 ~~~~i~l~~p~NPtG---~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~ 204 (368)
T PRK03317 160 RPDVVFLTSPNNPTG---TALPLDDVEAILDAAPGIVVVDEAYAEFRR 204 (368)
T ss_pred CCCEEEEeCCCCCCC---CCCCHHHHHHHHHHCCceEEEeCCchhhcc
Confidence 24555553333333 344556677888877899999999998864
No 101
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=31.93 E-value=1e+02 Score=27.11 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=36.4
Q ss_pred HHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHhcCCCCCCCCcCC-CCCC-----C--CCCCCCCCCcEEEeccchhh
Q psy10457 57 ALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQD-NEQD-----C--MPYPQAKLRPVVIDGSNVAM 126 (508)
Q Consensus 57 ~~klgy~~~~v~~~l~klg~~~~~n~~l~Eliklg~~~~~~~~~~-~~~~-----~--~~~~~~~lRpIVIDGSNVAm 126 (508)
++|-+.|.+++..+|+++|.+ +.+|+......-.++... .... . ...+.-.-||||+||..+..
T Consensus 31 i~~~~~t~~el~~~l~~~~~~------~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~v 102 (112)
T cd03034 31 YLKTPPTAAELRELLAKLGIS------PRDLLRTKEAPYKELGLADPELSDEELIDAMAAHPILIERPIVVTGDGAVL 102 (112)
T ss_pred cccCCcCHHHHHHHHHHcCCC------HHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhCcCcccCCEEEECCEEEE
Confidence 457788999999999999855 446665432211111100 0000 0 11233345899999987543
No 102
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=31.82 E-value=1e+02 Score=29.97 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccch--HHHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDD--RFILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDD--ryILklA 212 (508)
+..+...|++|+.++||+.|.++....... ........+...+.+.|+- +++...+.+.. +++. ..+.++.
T Consensus 136 n~~~g~~a~~~l~~~G~~~I~~l~~~~~~~----~~~~R~~Gf~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l 208 (309)
T PRK11041 136 NLTAAFEAVNYLHELGHKRIACIAGPEEMP----LCHYRLQGYVQALRRCGIT-VDPQYIARGDF--TFEAGAKALKQLL 208 (309)
T ss_pred cHHHHHHHHHHHHHcCCceEEEEeCCcccc----chHHHHHHHHHHHHHcCCC-CCHHHeEeCCC--CHHHHHHHHHHHH
Confidence 467888999999999999876665421110 0001123344555555542 11111111110 1221 2333333
Q ss_pred H---hCCcEEEeCCcchh
Q psy10457 213 A---DTDGIVVSNDNYRD 227 (508)
Q Consensus 213 ~---e~dGvIVSNDnYRD 227 (508)
. ..+|+|++||.+--
T Consensus 209 ~~~~~~~ai~~~~d~~a~ 226 (309)
T PRK11041 209 DLPQPPTAVFCHSDVMAL 226 (309)
T ss_pred cCCCCCCEEEEcCcHHHH
Confidence 2 35899999998863
No 103
>PTZ00377 alanine aminotransferase; Provisional
Probab=31.70 E-value=1.3e+02 Score=32.48 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=58.0
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHH-HcCCceEEEEeccccc------c-cCC-------CC-CCCChHHHHHHHH
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFR-ARGHKEITVFVPKWRK------E-SCR-------PD-NLIKNQEVLSELE 182 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~-~RGh~~VvVFVP~~Rk------~-~~r-------~d-~~i~d~~iL~eL~ 182 (508)
+|-.||.+..|. -.+|..++..|. ..|- .|+|..|.|-. . ..+ .+ ...-+.+.|++..
T Consensus 136 ~~~~~I~it~Ga-----~~al~~~~~~l~~~~gD-~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l 209 (481)
T PTZ00377 136 KDPSDIFLTDGA-----SSGIKLLLQLLIGDPSD-GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAY 209 (481)
T ss_pred CChhhEEEcCCH-----HHHHHHHHHHhccCCCC-EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHH
Confidence 455666666662 446666666665 4564 35666666521 0 000 01 1112345555543
Q ss_pred H--------CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 183 K--------DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 183 k--------~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
. -..|+++...+.-|.-+ +.++ .-|+++|.+.|.+||+-|=|.++..
T Consensus 210 ~~~~~~~~~~k~l~l~~P~NPTG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~ 265 (481)
T PTZ00377 210 EQAVRNGITPRALVVINPGNPTGQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIY 265 (481)
T ss_pred HHHHhcCCCeeEEEEECCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhcc
Confidence 2 23344442234555433 2333 4788999999999999999999765
No 104
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=31.60 E-value=1.7e+02 Score=28.95 Aligned_cols=84 Identities=19% Similarity=0.335 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILklA 212 (508)
+..+-..|++|+.++||+.| +|+-. .... .....-..+.+.|.+.|+... .-.+.+. .++++- .+-++.
T Consensus 164 n~~~~~~a~~~L~~~Gh~~I-~~i~~-~~~~---~~~~R~~Gf~~al~~~g~~~~--~~~~~~~--~~~~~~~~~~~~~l 234 (331)
T PRK14987 164 NFEAARQMTTAIIARGHRHI-AYLGA-RLDE---RTIIKQKGYEQAMLDAGLVPY--SVMVEQS--SSYSSGIELIRQAR 234 (331)
T ss_pred cHHHHHHHHHHHHHCCCceE-EEEcC-CCcc---cHHHHHHHHHHHHHHcCCCcc--ceeecCC--CChhhHHHHHHHHH
Confidence 56788899999999999975 45521 1100 000112344567777775210 0000110 012221 122222
Q ss_pred H---hCCcEEEeCCcchh
Q psy10457 213 A---DTDGIVVSNDNYRD 227 (508)
Q Consensus 213 ~---e~dGvIVSNDnYRD 227 (508)
. +.+|+|++||.+--
T Consensus 235 ~~~~~~~ai~~~nD~~A~ 252 (331)
T PRK14987 235 REYPQLDGVFCTNDDLAV 252 (331)
T ss_pred hcCCCCCEEEECCcHHHH
Confidence 2 34899999999854
No 105
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=31.58 E-value=16 Score=31.76 Aligned_cols=43 Identities=30% Similarity=0.510 Sum_probs=29.9
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhC--------CCCChHHHHHHHHhcCCC
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLG--------PNPSHNELLAELIKLGAQ 93 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg--------~~~~~n~~l~Eliklg~~ 93 (508)
-.+|+++.++|-+++.|..+..++| |...+..||.||=+.+..
T Consensus 15 g~~v~~ae~~Gms~e~i~~~A~~iGdyLA~~vdP~N~EerlLkELW~va~e 65 (81)
T PF11588_consen 15 GDRVEQAEKLGMSEETIANLAYQIGDYLAKNVDPKNPEERLLKELWDVADE 65 (81)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHT-----SHHHHHHHHHHHC--H
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCH
Confidence 3689999999999999999887776 566778899999887754
No 106
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=31.46 E-value=1.4e+02 Score=31.30 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHH--CCcEEecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 175 QEVLSELEK--DRILVYTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 175 ~~iL~eL~k--~g~Lv~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.+.|.++.+ -+.|+++...+.-|.-+ +.+++ -|+++|.+.|.+||.-|-|.|+..+
T Consensus 167 ~~~l~~~~~~~~~~i~~~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 225 (412)
T PTZ00433 167 LDEIRRLVDDRTKALIMTNPSNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFN 225 (412)
T ss_pred HHHHHHHhccCceEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccC
Confidence 344444432 34455543333445333 33443 6789999999999999999998753
No 107
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=31.45 E-value=2.4e+02 Score=29.04 Aligned_cols=101 Identities=14% Similarity=0.224 Sum_probs=58.4
Q ss_pred hHHHHHHHHHCCcEEecCCc------ccCC---CcccccchH-HHHHHHHhCC-----cEEEe-CCcchhhhhcChhHHH
Q psy10457 174 NQEVLSELEKDRILVYTPSR------LIGG---KRLVCYDDR-FILRLAADTD-----GIVVS-NDNYRDLCLESPDFRK 237 (508)
Q Consensus 174 d~~iL~eL~k~g~Lv~TPSr------~v~G---kr~~syDDr-yILklA~e~d-----GvIVS-NDnYRD~~~E~Pe~K~ 237 (508)
..+.+.+|.+.|+-.+.=.+ .+.. ....+.+|+ -+++.|.+.| ++|+. ...+.|.+.---.+++
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~ 221 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRE 221 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHH
Confidence 47888999998875442010 0000 112244444 4677787776 45666 5666665554333444
Q ss_pred HHhcceeee-EEeCCcccCCCCCCCC-CCCChhhhhcccc
Q psy10457 238 VVEDRILMY-SFVNDRFMPPEDPLGR-SGPSLDKFLTIDY 275 (508)
Q Consensus 238 ~IeeRlL~Y-TFvgD~FmPPdDPLGR-~GP~Ld~fLr~~~ 275 (508)
. ....+.| .|+.-.|.|+.-||+. ..++.+++|+.-.
T Consensus 222 l-~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA 260 (340)
T TIGR03699 222 L-QDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLA 260 (340)
T ss_pred h-chhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHH
Confidence 2 2222333 5667777888889974 6678888888765
No 108
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=31.39 E-value=58 Score=27.98 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=28.3
Q ss_pred ccchHHHHHHHHhCC-cEEEeCCcchhhhhcChhHHHHHh-cceeeeEEe
Q psy10457 202 CYDDRFILRLAADTD-GIVVSNDNYRDLCLESPDFRKVVE-DRILMYSFV 249 (508)
Q Consensus 202 syDDryILklA~e~d-GvIVSNDnYRD~~~E~Pe~K~~Ie-eRlL~YTFv 249 (508)
.+.|.-|+.+|.+.+ .+|+|||. ++|+.+. ..=++--|.
T Consensus 51 ~~addci~~~~~~~~~~~VaT~D~---------~Lr~~lr~~~GvPvi~l 91 (101)
T PF04900_consen 51 GSADDCILDLAGKNNKYIVATQDK---------ELRRRLRKIPGVPVIYL 91 (101)
T ss_pred cCHHHHHHHHhccCCeEEEEecCH---------HHHHHHhcCCCCCEEEE
Confidence 478999999999988 89999995 3666555 334444444
No 109
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=31.38 E-value=1e+02 Score=26.94 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHh-----CCCCChHHHHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCcEEEeccchhhhcCCCCccc
Q psy10457 61 GYTEDLVQTALNKL-----GPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFS 135 (508)
Q Consensus 61 gy~~~~v~~~l~kl-----g~~~~~n~~l~Eliklg~~~~~~~~~~~~~~~~~~~~~~lRpIVIDGSNVAmshG~~k~FS 135 (508)
-||+++.-..|+++ +.+..+++++..+++++..+ |||++=|+-..+.--|
T Consensus 9 dyTE~EFl~~v~~i~~~~~~~ee~~d~lv~hF~~iteHP-------------------------~gSDLIfYP~~~~eds 63 (85)
T PF01320_consen 9 DYTESEFLEFVKEIFNAELKTEEEHDELVDHFEKITEHP-------------------------DGSDLIFYPEDGREDS 63 (85)
T ss_dssp GSBHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH--T-------------------------TTTHHHHS-STTSTSS
T ss_pred HhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCC-------------------------CCCceeeeCCCCCCCC
Confidence 38888888887765 44446788888888887654 4777777766655568
Q ss_pred hHHHHHHHHHHHHc
Q psy10457 136 CIGIKICVDWFRAR 149 (508)
Q Consensus 136 ~rGI~iAV~yF~~R 149 (508)
..||...|.-|++.
T Consensus 64 PegIv~~vKeWRa~ 77 (85)
T PF01320_consen 64 PEGIVKEVKEWRAS 77 (85)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999888888654
No 110
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=31.21 E-value=95 Score=28.76 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=13.7
Q ss_pred ccchHHHHHHHHhCCcEEEeCCc
Q psy10457 202 CYDDRFILRLAADTDGIVVSNDN 224 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSNDn 224 (508)
..+|.||++.|.+.| +|||.|-
T Consensus 39 DaaD~~I~~~~~~gD-iVITqDi 60 (130)
T PF02639_consen 39 DAADFYIVNHAKPGD-IVITQDI 60 (130)
T ss_pred ChHHHHHHHcCCCCC-EEEECCH
Confidence 346777777766544 5666663
No 111
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=31.06 E-value=1.1e+02 Score=30.47 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHcCCceEEEE
Q psy10457 135 SCIGIKICVDWFRARGHKEITVF 157 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVF 157 (508)
+..+...+++|+.++||+.|.++
T Consensus 160 n~~~~~~a~~~L~~~G~~~I~~i 182 (343)
T PRK10727 160 DRYGAWLATRHLIQQGHTRIGYL 182 (343)
T ss_pred cHHHHHHHHHHHHHCCCccEEEE
Confidence 35788999999999999986554
No 112
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=30.98 E-value=44 Score=33.87 Aligned_cols=26 Identities=15% Similarity=0.538 Sum_probs=21.7
Q ss_pred chhhHHHHHHhhCCCHHHHHHHHHHh
Q psy10457 49 GYSARVDFALKLGYTEDLVQTALNKL 74 (508)
Q Consensus 49 ~~~~~~~f~~klgy~~~~v~~~l~kl 74 (508)
....+++|+.++|+|+++|.+++.+.
T Consensus 242 ~l~~~i~~L~~lG~s~~ei~~mv~~~ 267 (345)
T PF02536_consen 242 KLKPKIEFLQSLGFSEEEIAKMVRRF 267 (345)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHhC
Confidence 47799999999999999999999876
No 113
>PRK06108 aspartate aminotransferase; Provisional
Probab=30.85 E-value=1.5e+02 Score=30.20 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=35.4
Q ss_pred hHHHHHHHHH--CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELEK--DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~k--~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
|.+.|.++.+ -.+|+++...+.-|..+ +.++ .-|+++|.+.|.+||.-|-|.|+...
T Consensus 147 d~~~l~~~~~~~~~~i~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~ 206 (382)
T PRK06108 147 DLDRLLAAITPRTRALFINSPNNPTGWTA-SRDDLRAILAHCRRHGLWIVADEVYERLYYA 206 (382)
T ss_pred CHHHHHHhcCccceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEehhhhhhccC
Confidence 3444544432 23555553334445433 2333 45889999999999999999998753
No 114
>PRK06836 aspartate aminotransferase; Provisional
Probab=30.09 E-value=1.9e+02 Score=30.02 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=34.4
Q ss_pred hHHHHHHHHH--CCcEEecCCcccCCCcccccchHHHHHHHHh------CCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELEK--DRILVYTPSRLIGGKRLVCYDDRFILRLAAD------TDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~k--~g~Lv~TPSr~v~Gkr~~syDDryILklA~e------~dGvIVSNDnYRD~~~E 231 (508)
|.+.|.++.+ -.+|+++...+..|..+.-.+=.-|+++|.+ .|..||..|-|.|+..+
T Consensus 157 d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~ 222 (394)
T PRK06836 157 DLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYD 222 (394)
T ss_pred CHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccC
Confidence 3344554432 3555555444455543321222356678888 78999999999998754
No 115
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.97 E-value=1.2e+02 Score=29.41 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEE
Q psy10457 135 SCIGIKICVDWFRARGHKEITVF 157 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVF 157 (508)
+-.+...|++++.++||+.|..+
T Consensus 102 ~~~~~~~a~~~L~~~G~~~I~~i 124 (269)
T cd06287 102 SAATARMLLEHLRAQGARQIALI 124 (269)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEE
Confidence 35788999999999999986544
No 116
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=29.57 E-value=2.4e+02 Score=29.13 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 184 DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 184 ~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
-++|+++...+.-|.-+ +.++ .-|+++|.+.|.+||..|=|.++..+
T Consensus 166 ~k~i~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~ 213 (393)
T TIGR03538 166 CQLLFVCSPGNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFD 213 (393)
T ss_pred ceEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccC
Confidence 35555543333445433 2233 35678889999999999999988753
No 117
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=29.35 E-value=1.7e+02 Score=30.52 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=35.2
Q ss_pred hHHHHHHHHH--CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELEK--DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~k--~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+.+.++++.. ..+++++...+.-|.-+ +.++ .-|+++|.+.|.+||.-|-|.|+...
T Consensus 158 d~~~l~~~~~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~ 217 (403)
T TIGR01265 158 DLDGLEALADEKTVAIVVINPSNPCGSVF-SRDHLQKIAEVARKLGIPIIADEIYGHMVFG 217 (403)
T ss_pred CHHHHHHHhCcCccEEEEecCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccC
Confidence 3455555533 34555553333444221 1122 34889999999999999999998754
No 118
>PRK09492 treR trehalose repressor; Provisional
Probab=29.33 E-value=1.7e+02 Score=28.58 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe-cccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV-PKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRL 211 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV-P~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILkl 211 (508)
+..+...+++|+.++||+.|.++- +...... ..-.-..+.+.|.+.|+-... ..+.. ++++- .+.++
T Consensus 159 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~----~~~R~~Gf~~al~~~g~~~~~----~~~~~--~~~~~~~~~~~~ 228 (315)
T PRK09492 159 DEGAIKLLMQRLYDQGHRHISYLGVDHSDVTT----GKRRHQAYLAFCKQHKLTPVA----ALGGL--SMQSGYELVAKV 228 (315)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEcCCcccchh----HHHHHHHHHHHHHHcCCCcee----ecCCC--CchHHHHHHHHH
Confidence 457888999999999999865442 1110000 001123445666667752111 11110 11221 12121
Q ss_pred -HHhCCcEEEeCCcch
Q psy10457 212 -AADTDGIVVSNDNYR 226 (508)
Q Consensus 212 -A~e~dGvIVSNDnYR 226 (508)
..+.+|+|+.||.+-
T Consensus 229 l~~~~~ai~~~~D~~A 244 (315)
T PRK09492 229 LTPETTALVCATDTLA 244 (315)
T ss_pred hhcCCCEEEEcCcHHH
Confidence 234689999999874
No 119
>KOG1015|consensus
Probab=28.83 E-value=54 Score=40.00 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=53.0
Q ss_pred hhhcCCCCccchHHHHHHHHHHHHcCCceEEEEec-----ccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCc
Q psy10457 125 AMSHGNKELFSCIGIKICVDWFRARGHKEITVFVP-----KWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKR 199 (508)
Q Consensus 125 AmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP-----~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr 199 (508)
|+.-|.+++|-+-...-.|---.+.|++.++|+.| +|+.+..++ +..++...-|-+---.. .++
T Consensus 702 AHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekW---------m~~~e~~~~leV~eL~~--vkr 770 (1567)
T KOG1015|consen 702 AHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKW---------MEGLEDDEKLEVSELAT--VKR 770 (1567)
T ss_pred HHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHh---------cccccccccceeehhhh--ccC
Confidence 33344567776655554444455689998888887 466553211 11111111111110010 111
Q ss_pred ccccchHHHHHHHHhCCcE-EEeCCcchhhhhcC
Q psy10457 200 LVCYDDRFILRLAADTDGI-VVSNDNYRDLCLES 232 (508)
Q Consensus 200 ~~syDDryILklA~e~dGv-IVSNDnYRD~~~E~ 232 (508)
-.+-.|+|+.=.+.||| |+.=|+||-+..+.
T Consensus 771 --~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr 802 (1567)
T KOG1015|consen 771 --PEERSYMLQRWQEDGGVMIIGYDMYRNLAQGR 802 (1567)
T ss_pred --hHHHHHHHHHHHhcCCEEEEehHHHHHHhccc
Confidence 13446888888888886 77899999999874
No 120
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=28.75 E-value=1.4e+02 Score=29.34 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCc---EEecCCcccCCCcccccchHH----
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRI---LVYTPSRLIGGKRLVCYDDRF---- 207 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~---Lv~TPSr~v~Gkr~~syDDry---- 207 (508)
+..+...+++|+.++||+.|.++...-... .....-..+.+.|.+.|+ +...... +.++-+
T Consensus 163 ~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~----~~~~R~~Gf~~al~~~g~~~~~~~~~~~--------~~~~~~~~~~ 230 (328)
T PRK11303 163 DQDDAEMLAESLLKFPAESILLLGALPELS----VSFEREQGFRQALKDDPREVHYLYANSF--------EREAGAQLFE 230 (328)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeCccccc----cHHHHHHHHHHHHHHcCCCceEEEeCCC--------ChHHHHHHHH
Q ss_pred -HHHHHHhCCcEEEeCCcc
Q psy10457 208 -ILRLAADTDGIVVSNDNY 225 (508)
Q Consensus 208 -ILklA~e~dGvIVSNDnY 225 (508)
+|+.-.+.+|+++.||.+
T Consensus 231 ~~l~~~~~~~ai~~~~d~~ 249 (328)
T PRK11303 231 KWLETHPMPDALFTTSYTL 249 (328)
T ss_pred HHHcCCCCCCEEEEcCcHH
No 121
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=28.39 E-value=1.6e+02 Score=29.90 Aligned_cols=68 Identities=7% Similarity=0.082 Sum_probs=40.7
Q ss_pred HCCcEEecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhhcC-hhHHHHHhc--ce-eeeEEeCC
Q psy10457 183 KDRILVYTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLES-PDFRKVVED--RI-LMYSFVND 251 (508)
Q Consensus 183 k~g~Lv~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E~-Pe~K~~Iee--Rl-L~YTFvgD 251 (508)
+-++|+++...+.-|.-+ +.+++ -|+++|.+.|+.||.-|=|.|+..+. +....++.. ++ +..||..-
T Consensus 122 ~~k~v~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 194 (332)
T PRK06425 122 NFDLIFIVSPDNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKI 194 (332)
T ss_pred CCCEEEEeCCCCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHh
Confidence 445666653334445433 34443 46788899999999999999997542 234444442 33 33566543
No 122
>PRK08363 alanine aminotransferase; Validated
Probab=28.29 E-value=1.4e+02 Score=30.99 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=21.4
Q ss_pred HHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 207 FILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 207 yILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.|+++|.+.|..||..|-|.|+..+
T Consensus 190 ~l~~~a~~~~~~li~Deay~~~~~~ 214 (398)
T PRK08363 190 EILDIAGEHDLPVISDEIYDLMTYE 214 (398)
T ss_pred HHHHHHHHcCeEEEEhhhhhhhccC
Confidence 5789999999999999999987654
No 123
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=28.26 E-value=2.2e+02 Score=30.90 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=29.7
Q ss_pred CcEEecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhhcC
Q psy10457 185 RILVYTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLES 232 (508)
Q Consensus 185 g~Lv~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E~ 232 (508)
..|+++...+.-|.-+ +.+.+ -|+++|.+.|..||+-|=|.++....
T Consensus 193 k~v~l~nP~NPTG~~~-s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~ 240 (468)
T PLN02450 193 KGVLITNPSNPLGTTT-TRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240 (468)
T ss_pred eEEEEecCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEEccccccccCC
Confidence 4566662233334322 12222 46788899999999999999876543
No 124
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.08 E-value=1.2e+02 Score=31.94 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCceEEEEecc--cccccCCC-CCCCCh-HHHHHHHHHCCc-EEecCCcccCCCcccccchHHHHHHHHhC
Q psy10457 141 ICVDWFRARGHKEITVFVPK--WRKESCRP-DNLIKN-QEVLSELEKDRI-LVYTPSRLIGGKRLVCYDDRFILRLAADT 215 (508)
Q Consensus 141 iAV~yF~~RGh~~VvVFVP~--~Rk~~~r~-d~~i~d-~~iL~eL~k~g~-Lv~TPSr~v~Gkr~~syDDryILklA~e~ 215 (508)
..|.-+.++||+ |++|+-+ -+.+...- ....+. .+++.+|-.-.. .+.+|.+ ..-|..|=++|...
T Consensus 14 n~v~rl~~~ghd-vV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag--------~it~~vi~~la~~L 84 (300)
T COG1023 14 NLVRRLLDGGHD-VVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAG--------DITDAVIDDLAPLL 84 (300)
T ss_pred HHHHHHHhCCCe-EEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCC--------CchHHHHHHHHhhc
Confidence 346778999996 7899843 22211100 111122 455555543333 3445887 56788999999865
Q ss_pred --CcEEEe--CCcchhhhhcChhHHH
Q psy10457 216 --DGIVVS--NDNYRDLCLESPDFRK 237 (508)
Q Consensus 216 --dGvIVS--NDnYRD~~~E~Pe~K~ 237 (508)
|-+||- |.+|+|-+....++++
T Consensus 85 ~~GDivIDGGNS~y~Ds~rr~~~l~~ 110 (300)
T COG1023 85 SAGDIVIDGGNSNYKDSLRRAKLLAE 110 (300)
T ss_pred CCCCEEEECCccchHHHHHHHHHHHh
Confidence 446776 9999998886555443
No 125
>PRK06207 aspartate aminotransferase; Provisional
Probab=27.64 E-value=2e+02 Score=30.17 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred hHHHHHHHHHC--CcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 174 NQEVLSELEKD--RILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 174 d~~iL~eL~k~--g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
|.+.|+++.+. ..|+++-..+.-|.-+. .++ .-|+++|.+.|..||+-|=|.|+..
T Consensus 167 d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s-~e~l~~l~~~a~~~~~~iI~De~Y~~~~~ 225 (405)
T PRK06207 167 DLDQLEEAFKAGVRVFLFSNPNNPAGVVYS-AEEIAQIAALARRYGATVIVDQLYSRLLY 225 (405)
T ss_pred CHHHHHHhhhhcCeEEEECCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 33445544332 33444433345454432 333 3578899999999999999999865
No 126
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=27.37 E-value=1.5e+02 Score=29.56 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...|++|+.++||+.|.+|.
T Consensus 160 ~~~~~~~a~~~L~~~G~~~I~~i~ 183 (346)
T PRK10401 160 NVSGARMATRMLLNNGHQRIGYLS 183 (346)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEe
Confidence 457889999999999999865543
No 127
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=26.43 E-value=1.3e+02 Score=26.45 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=15.0
Q ss_pred HHhhCCCHHHHHHHHHHhC
Q psy10457 57 ALKLGYTEDLVQTALNKLG 75 (508)
Q Consensus 57 ~~klgy~~~~v~~~l~klg 75 (508)
+.|-+-|.+++..+|.++|
T Consensus 31 i~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 31 YRKDGLDAATLERWLAKVG 49 (105)
T ss_pred cccCCCCHHHHHHHHHHhC
Confidence 4466778888888888887
No 128
>PRK09148 aminotransferase; Validated
Probab=26.40 E-value=1.5e+02 Score=31.13 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=30.2
Q ss_pred CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 184 DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 184 ~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
..+|+++-..+.-|.-+ +.+. .-|+++|.+.|..||.-|-|.|+..
T Consensus 166 ~~~v~l~~P~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~ 212 (405)
T PRK09148 166 PIALIVNYPSNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYF 212 (405)
T ss_pred ceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhc
Confidence 35566552233444322 2222 4688999999999999999999865
No 129
>PRK09526 lacI lac repressor; Reviewed
Probab=26.37 E-value=1.8e+02 Score=28.88 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 165 ~~~~~~~a~~~L~~~G~~~I~~l~ 188 (342)
T PRK09526 165 PEDGTRLGVEHLVELGHQRIALLA 188 (342)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEe
Confidence 457888999999999999876554
No 130
>PF01850 PIN: PIN domain; InterPro: IPR002716 The PilT protein, N-terminal domain (PIN) is a compact domain of about 100 amino acids. The domain has two nearly invariant aspartates and forms a coiled-coil with other monomer units to polymerise a pilus fibre []. The function of the PIN domain is unknown but a role in signalling appears likely given the presence of this domain in some bacterial plasmid stability proteins and Dis3 from yeast that is implicated in mitotic control [].; PDB: 3TND_G 2H1O_B 2BSQ_B 2H1C_A 2FE1_A 3ZVK_C 1V8P_F 1V8O_C 3H87_A 1O4W_A ....
Probab=26.22 E-value=47 Score=27.52 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.5
Q ss_pred ccchHHHHHHHHhCCcEEE-eCCc
Q psy10457 202 CYDDRFILRLAADTDGIVV-SNDN 224 (508)
Q Consensus 202 syDDryILklA~e~dGvIV-SNDn 224 (508)
...|.+++..|.+.|+-+| |+|.
T Consensus 90 ~~~Da~~~a~A~~~~~~~v~T~D~ 113 (121)
T PF01850_consen 90 DFADALIAATAKENGAPLVVTFDK 113 (121)
T ss_dssp SHHHHHHHHHHHHHT-EEE-ESSH
T ss_pred ChhHHHHHHHHHHcCCEEEEECCc
Confidence 5689999999999999777 9985
No 131
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=26.12 E-value=1.6e+02 Score=29.20 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHcCCceEEEE
Q psy10457 135 SCIGIKICVDWFRARGHKEITVF 157 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVF 157 (508)
+..+...+++|+.++||+.|.++
T Consensus 166 ~~~~~~~a~~~L~~~G~~~I~~i 188 (342)
T PRK10014 166 NMQAAQLLTEHLIRNGHQRIAWL 188 (342)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE
Confidence 45788999999999999986544
No 132
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.91 E-value=3.3e+02 Score=33.18 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=51.0
Q ss_pred HHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHhcCCCCCCCCcCC---------------CCCCCCCCCC-CCCCcE
Q psy10457 54 VDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQD---------------NEQDCMPYPQ-AKLRPV 117 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Eliklg~~~~~~~~~~---------------~~~~~~~~~~-~~lRpI 117 (508)
+..|+++|||..+|...+ +...++|-.--.+++..+..+.++. -+........ ...+.+
T Consensus 485 ~~~~k~~gfsd~~ia~~~-----~~~~~~v~~~r~~~~~~p~~k~vd~~a~ef~~~t~~~y~ty~~~~~~~~~~~~kkvL 559 (1068)
T PRK12815 485 LRKVKEKGFSDALLAELT-----GVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYSTYFGESEAEPSSEKKKVL 559 (1068)
T ss_pred HHHHHHcCCCHHHHHHHh-----CcCHHHHHHHHHHCCCeeEEEEecCCcCcccCCCCceeeeCCCCCcCccCCCCceEE
Confidence 556788888888887765 2345555555555555443333221 0111111111 344455
Q ss_pred EEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEec
Q psy10457 118 VIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVP 159 (508)
Q Consensus 118 VIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP 159 (508)
||.|...-+ |.+..|+.-. ..++..+++.|++ ++++..
T Consensus 560 IlG~G~~ri--g~~~efdy~~-v~~~~aLk~~G~~-vI~vn~ 597 (1068)
T PRK12815 560 ILGSGPIRI--GQGIEFDYSS-VHAAFALKKEGYE-TIMINN 597 (1068)
T ss_pred Eeccccccc--ccccccchhH-HHHHHHHHHcCCE-EEEEeC
Confidence 665543333 3334466533 3456788999997 455553
No 133
>PRK08068 transaminase; Reviewed
Probab=25.89 E-value=2.2e+02 Score=29.47 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=31.7
Q ss_pred HCCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 183 KDRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 183 k~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+-++|+++...+.-|.-+ +.+. .-|+++|++.|.+||..|-|.|+...
T Consensus 167 ~~~~v~l~~P~NPTG~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~~~ 215 (389)
T PRK08068 167 KAKLMYLNYPNNPTGAVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIGFD 215 (389)
T ss_pred cceEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhccC
Confidence 456677772233444322 2222 36788999999999999999997654
No 134
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=25.60 E-value=1.5e+02 Score=26.19 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.1
Q ss_pred HHhhCCCHHHHHHHHHHhCCC
Q psy10457 57 ALKLGYTEDLVQTALNKLGPN 77 (508)
Q Consensus 57 ~~klgy~~~~v~~~l~klg~~ 77 (508)
+.|-+.|.+++..+|+++|.+
T Consensus 31 i~~~p~t~~el~~~l~~~g~~ 51 (114)
T TIGR00014 31 YLKNPPTKSELEAIFAKLGLT 51 (114)
T ss_pred ccCCCcCHHHHHHHHHHcCCc
Confidence 347788999999999998854
No 135
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.44 E-value=1.3e+02 Score=30.97 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHcCCceEEEEe
Q psy10457 136 CIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 136 ~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
...+..+|+|..+.|.+.|+||.
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYa 79 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYL 79 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEE
Confidence 56778889999999999999987
No 136
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=25.37 E-value=1.9e+02 Score=30.32 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHcCCceEEEEecccccc------cC-C-------C-CCCCChHHHHHHHHH--CCcEEe-cCCcccCC
Q psy10457 136 CIGIKICVDWFRARGHKEITVFVPKWRKE------SC-R-------P-DNLIKNQEVLSELEK--DRILVY-TPSRLIGG 197 (508)
Q Consensus 136 ~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~------~~-r-------~-d~~i~d~~iL~eL~k--~g~Lv~-TPSr~v~G 197 (508)
-.+|.+++..|...|- .|++..|.|..- .+ + . +...-|-+.|+++.+ ...+++ +| .+.-|
T Consensus 107 ~~al~~~~~~l~~~gd-~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP-~NPTG 184 (409)
T PLN00143 107 KHAAEIIIKVLARPEA-NILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINP-GNPCG 184 (409)
T ss_pred HHHHHHHHHHHcCCCC-EEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECC-CCCCC
Confidence 3456666666666664 355666665210 00 0 0 111124455665533 234444 45 33445
Q ss_pred CcccccchH-HHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 198 KRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 198 kr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.-+ +.+.+ -|+++|.+.|.+||+-|=|.|+..+
T Consensus 185 ~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~ 218 (409)
T PLN00143 185 SVY-SYEHLNKIAETARKLGILVIADEVYGHIVFG 218 (409)
T ss_pred Ccc-CHHHHHHHHHHHHHcCCeEEEEccccccccC
Confidence 333 23332 5778899999999999999998754
No 137
>COG1487 VapC Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.36 E-value=1.2e+02 Score=26.88 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=28.5
Q ss_pred HHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCc
Q psy10457 176 EVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDN 224 (508)
Q Consensus 176 ~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDn 224 (508)
.+...|.+.|. |. ...|-+|-..|...|..+||+|.
T Consensus 81 ~i~~~l~~~G~----~~---------~~~D~lIAa~A~~~~~~LvT~d~ 116 (133)
T COG1487 81 EIQARLRKEGI----PI---------GLNDLLIAATAIAHGLLLVTRDV 116 (133)
T ss_pred HHHHHHHhcCC----CC---------ChHHHHHHHHHHHcCCEEEEcCH
Confidence 44567777776 11 46899999999999999999994
No 138
>PRK05957 aspartate aminotransferase; Provisional
Probab=25.32 E-value=2.5e+02 Score=29.14 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=35.0
Q ss_pred hHHHHHHHHH--CCcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELEK--DRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~k--~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+.+.|+++++ -.+|+++...+.-|..+.-.+=.-|+++|++.|..||.-|-|+|+...
T Consensus 149 d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~ 208 (389)
T PRK05957 149 QPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYD 208 (389)
T ss_pred CHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCC
Confidence 3444555543 245555533334443322111234779999999999999999988764
No 139
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=24.81 E-value=2.6e+02 Score=28.96 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=30.5
Q ss_pred CcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 185 RILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 185 g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.+|+++...+.-|.-+...+=.-|+++|.+.|.+||.-|=|.|+...
T Consensus 168 k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 214 (396)
T PRK09147 168 QLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFD 214 (396)
T ss_pred EEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccC
Confidence 45555433444454333222235678899999999999999998653
No 140
>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair [, ]. XP-G can be corrected by a 133 Kd nuclear protein, XPGC []. XPGC is an acidic protein that confers normal UV resistance in expressing cells []. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms [, ]. XPGC cleaves one strand of the duplex at the border with the single-stranded region []. XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases [, ]; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents the N-terminal of XPG.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1A77_A 1A76_A 1MC8_B 3QEB_Z 3QEA_Z 3QE9_Y 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A ....
Probab=24.79 E-value=77 Score=26.87 Aligned_cols=44 Identities=23% Similarity=0.095 Sum_probs=27.5
Q ss_pred CcEEEeccchhhhc--CC--------CCccchHHHHHHHHHHHHcCCceEEEEe
Q psy10457 115 RPVVIDGSNVAMSH--GN--------KELFSCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 115 RpIVIDGSNVAmsh--G~--------~k~FS~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
..|.|||+.-.+.. +. ....-..++..-+..|...|.++|.||+
T Consensus 27 ~~vaID~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~gI~PifVFD 80 (101)
T PF00752_consen 27 KRVAIDASCWLHQFLFSCREELGQGVGTDSHLRGLFSRLCRLLEHGIKPIFVFD 80 (101)
T ss_dssp CEEEEEHHHHHHHHHHHSBCTTSCB-BS-HHHHHHHHHHHHHHHTTEEEEEEE-
T ss_pred CEEEEEcHHHHHHHHHHhHHHhccccchHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 46999999875531 11 1112234555556667888999999997
No 141
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=24.50 E-value=1.9e+02 Score=28.55 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 160 ~~~~~~~a~~~L~~~G~~~I~~i~ 183 (329)
T TIGR01481 160 YKQATKEAVGELIAKGHKSIAFVG 183 (329)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEe
Confidence 346888999999999999865543
No 142
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=24.17 E-value=85 Score=30.14 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=37.5
Q ss_pred hHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHH
Q psy10457 174 NQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRK 237 (508)
Q Consensus 174 d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~ 237 (508)
-+.+|+.|++.|+|..+| +|++++...-+++=.+|.+. +.++..+.|++.+
T Consensus 98 iR~~LqqLE~~glVek~~----~GR~lT~~G~~~LD~iA~~i---------~~~~~~~~p~l~~ 148 (150)
T PRK09333 98 IRKILQQLEKAGLVEKTK----KGRVITPKGRSLLDNLAAEV---------KKELAEERPELEK 148 (150)
T ss_pred HHHHHHHHHHCCCeeeCC----CCCEeCHHHHHHHHHHHHHH---------HHHHHhhCccccc
Confidence 578899999999999888 47777777777888888662 3444455666544
No 143
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=24.02 E-value=3e+02 Score=27.97 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=34.3
Q ss_pred hHHHHHHHH--HCCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELE--KDRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~--k~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
|.+.|+++. +-+++++++..+.-|... +.++ .-|+++|.+.|.+||..|-|.|+...
T Consensus 125 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 184 (350)
T TIGR03537 125 RLEKVEKSILEETKIVWINYPHNPTGATA-PRSYLKETIAMCREHGIILCSDECYTEIYFG 184 (350)
T ss_pred CHHHHHHhhhhccEEEEEeCCCCCcCccc-CHHHHHHHHHHHHHcCcEEEEeccccccccC
Confidence 344454442 335566664444445322 2222 35668899999999999999987543
No 144
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.89 E-value=1.5e+02 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=27.1
Q ss_pred cccchHHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 201 VCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 201 ~syDDryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+.-.|+.|-.+|...||..+|-+.|.+.+..
T Consensus 99 VVTSD~~iq~~~~~~GA~~iss~ef~~~l~~ 129 (166)
T PF05991_consen 99 VVTSDREIQRAARGRGAKRISSEEFLRELKA 129 (166)
T ss_pred EEeCCHHHHHHHhhCCCEEEcHHHHHHHHHH
Confidence 3458999999999999999999999888775
No 145
>PRK08361 aspartate aminotransferase; Provisional
Probab=23.82 E-value=2.5e+02 Score=29.03 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=28.4
Q ss_pred CcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 185 RILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 185 g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
++|+++...+.-|..+ +.++ .-|+++|.+.+.+||..|-|.++..
T Consensus 168 ~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 213 (391)
T PRK08361 168 RMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLY 213 (391)
T ss_pred EEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEccccccee
Confidence 3555552233444322 1222 2477889999999999999998864
No 146
>PTZ00376 aspartate aminotransferase; Provisional
Probab=23.81 E-value=4.6e+02 Score=27.40 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCceEEEEeccccc------ccC-CC--------CCCCChHHHHHHHHH---C-CcEEecCCc-ccCC
Q psy10457 138 GIKICVDWFRARGHKEITVFVPKWRK------ESC-RP--------DNLIKNQEVLSELEK---D-RILVYTPSR-LIGG 197 (508)
Q Consensus 138 GI~iAV~yF~~RGh~~VvVFVP~~Rk------~~~-r~--------d~~i~d~~iL~eL~k---~-g~Lv~TPSr-~v~G 197 (508)
.+..++..|...|- .|+|..|.|-. ..+ +. +..--|.+.|.+..+ . ..++++|+- +.-|
T Consensus 112 ~~~~~l~~~~~~Gd-~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG 190 (404)
T PTZ00376 112 LGFEFLKRFLPAGT-TVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTG 190 (404)
T ss_pred HHHHHHHHhcCCCC-EEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCC
Confidence 34444556666775 46677776521 101 00 111113445555442 2 345554432 2334
Q ss_pred CcccccchH-HHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 198 KRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 198 kr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.-+ +.+++ -|+++|.++|.+||+-|=|.|+..+
T Consensus 191 ~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~ 224 (404)
T PTZ00376 191 VDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASG 224 (404)
T ss_pred CCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCC
Confidence 333 44553 6788999999999999999998864
No 147
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.70 E-value=1.9e+02 Score=30.84 Aligned_cols=130 Identities=17% Similarity=0.269 Sum_probs=77.5
Q ss_pred EEeccc-hhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEeccccc-------ccCC-------C--CCCCChHHHHHH
Q psy10457 118 VIDGSN-VAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRK-------ESCR-------P--DNLIKNQEVLSE 180 (508)
Q Consensus 118 VIDGSN-VAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk-------~~~r-------~--d~~i~d~~iL~e 180 (508)
-+|..+ |....|. -.+|..++..|...|=+ |+|..|.|-. -.++ . +...-+.+.|++
T Consensus 85 ~~~~~~eiivt~Ga-----~~al~~~~~a~~~pGDe-Vlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~ 158 (393)
T COG0436 85 DVDPEEEIIVTAGA-----KEALFLAFLALLNPGDE-VLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEA 158 (393)
T ss_pred CCCCCCeEEEeCCH-----HHHHHHHHHHhcCCCCE-EEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHh
Confidence 344433 6666663 45778888889999964 7888888721 0110 0 122334566666
Q ss_pred HHHC--CcEEe-cCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhc---ChhHHHHHh--cceeee-EEeCC
Q psy10457 181 LEKD--RILVY-TPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE---SPDFRKVVE--DRILMY-SFVND 251 (508)
Q Consensus 181 L~k~--g~Lv~-TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E---~Pe~K~~Ie--eRlL~Y-TFvgD 251 (508)
.+.. +.|++ .|+ +.-|.-..-..=.-|.++|.++|.+|||=+=|+++..+ .+.+-++-. +|.|.. +|...
T Consensus 159 ~i~~ktk~i~ln~P~-NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~ 237 (393)
T COG0436 159 AITPKTKAIILNSPN-NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKT 237 (393)
T ss_pred hcCccceEEEEeCCC-CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccc
Confidence 5443 34444 454 34444333344568899999999999999999999986 233433332 455443 66554
Q ss_pred ccc
Q psy10457 252 RFM 254 (508)
Q Consensus 252 ~Fm 254 (508)
-.|
T Consensus 238 ~~m 240 (393)
T COG0436 238 YGM 240 (393)
T ss_pred ccc
Confidence 444
No 148
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=23.57 E-value=1.7e+02 Score=25.37 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=34.8
Q ss_pred cchhhHHHHHHhhCCC---HHHHHHHHHH----hCCCCChHHHHHHHHhcCC
Q psy10457 48 PGYSARVDFALKLGYT---EDLVQTALNK----LGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 48 ~~~~~~~~f~~klgy~---~~~v~~~l~k----lg~~~~~n~~l~Eliklg~ 92 (508)
+-...|++-|+.|||. .++|-.-|.. -++....-+++..|.+|.+
T Consensus 11 p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~ 62 (87)
T PF13797_consen 11 PALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKP 62 (87)
T ss_pred HHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCH
Confidence 3467899999999995 6777777732 3555688999999998875
No 149
>PRK07681 aspartate aminotransferase; Provisional
Probab=23.57 E-value=2.5e+02 Score=29.13 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=32.7
Q ss_pred HCCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 183 KDRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 183 k~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+-++|+++...+.-|.-+ +.+. .-|+++|.+.|.+||.-|-|.|+...
T Consensus 166 ~~k~v~l~~P~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~ 214 (399)
T PRK07681 166 KAKMMILNFPGNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFD 214 (399)
T ss_pred cceEEEEeCCCCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeC
Confidence 446777772244555443 2333 35778999999999999999998753
No 150
>KOG2494|consensus
Probab=23.44 E-value=45 Score=35.66 Aligned_cols=9 Identities=44% Similarity=1.110 Sum_probs=4.6
Q ss_pred ccccCCCCC
Q psy10457 296 CKFNHPERG 304 (508)
Q Consensus 296 ck~~hp~r~ 304 (508)
|||.||.+-
T Consensus 87 CkylHpp~h 95 (331)
T KOG2494|consen 87 CKYLHPPQH 95 (331)
T ss_pred ceecCCChh
Confidence 555555543
No 151
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=23.41 E-value=3.8e+02 Score=24.76 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCc-EE
Q psy10457 141 ICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDG-IV 219 (508)
Q Consensus 141 iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dG-vI 219 (508)
-...|++..||. ++..+ ..+|.+++..-.+++.|++|=.+ =.++.+...++ +.
T Consensus 11 ~Lar~LR~lG~D--t~~~~-----------~~~D~~il~~A~~e~RillTrd~-------------~l~~~~~~~~~~~l 64 (147)
T PF01927_consen 11 RLARWLRLLGYD--TLYSR-----------DIDDDEILELAREEGRILLTRDR-------------DLLKRRRVSGGVIL 64 (147)
T ss_pred HHHHHHHHCCCc--EEEeC-----------CCChHHHHHHhhhCCeEEEECCH-------------HHHHHhhccCCEEE
Confidence 347899999996 34433 24688888888899999998433 45566776666 67
Q ss_pred EeCCcchhh
Q psy10457 220 VSNDNYRDL 228 (508)
Q Consensus 220 VSNDnYRD~ 228 (508)
|.+|...+-
T Consensus 65 i~~~~~~~Q 73 (147)
T PF01927_consen 65 IRSDDPEEQ 73 (147)
T ss_pred EcCCCHHHH
Confidence 777766553
No 152
>PRK06855 aminotransferase; Validated
Probab=23.05 E-value=4.3e+02 Score=28.15 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=39.6
Q ss_pred hHHHHHHHHHC----C-cEEecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhhcC---hhHHHHHhc
Q psy10457 174 NQEVLSELEKD----R-ILVYTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLES---PDFRKVVED 241 (508)
Q Consensus 174 d~~iL~eL~k~----g-~Lv~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E~---Pe~K~~Iee 241 (508)
|.+.|+++.+. . +++.+|. +.-|.-+ +.+.+ -|+++|.+.|.+||+-|=|.|+..+. +.+..+..+
T Consensus 158 d~~~l~~~~~~~~~~~~i~l~~P~-NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~ 232 (433)
T PRK06855 158 DLDDLENKVKYNPSIAGILLINPD-NPTGAVY-PKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD 232 (433)
T ss_pred CHHHHHHHHhcCCCceEEEEECCC-CCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCc
Confidence 44666666542 2 3334453 3434322 23333 46788999999999999999997532 345555443
No 153
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=22.94 E-value=2e+02 Score=31.46 Aligned_cols=106 Identities=12% Similarity=0.181 Sum_probs=60.0
Q ss_pred EeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccc-------cCC-------CC-CCCChHHHHHHHHH
Q psy10457 119 IDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKE-------SCR-------PD-NLIKNQEVLSELEK 183 (508)
Q Consensus 119 IDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~-------~~r-------~d-~~i~d~~iL~eL~k 183 (508)
+|-.||....| +..+|.+++..|...|-+ |++..|.|-.- ..+ .+ ...-|.+.|.+...
T Consensus 206 ~~~~~I~it~G-----~~eal~~~~~~l~~~Gd~-Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 279 (517)
T PRK13355 206 VDVDDIYTGNG-----VSELINLSMSALLDDGDE-VLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKIT 279 (517)
T ss_pred CChhHEEEeCc-----HHHHHHHHHHHhCCCCCE-EEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcC
Confidence 46667776666 345677778878777864 67777765210 000 01 11123444544432
Q ss_pred --CCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 184 --DRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 184 --~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
-+.|+++...+.-|.-+ +.++ .-|+++|.+.|.+||+-|=|.|+..+
T Consensus 280 ~~~k~i~i~nP~NPTG~v~-~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~ 329 (517)
T PRK13355 280 SRTKAIVIINPNNPTGALY-PREVLQQIVDIAREHQLIIFSDEIYDRLVMD 329 (517)
T ss_pred cCceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhhcCC
Confidence 23444442233434322 2233 35778899999999999999987753
No 154
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=22.88 E-value=1.7e+02 Score=27.42 Aligned_cols=24 Identities=8% Similarity=0.229 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 98 ~~~~~~~~~~~l~~~g~~~i~~i~ 121 (260)
T cd06286 98 HYEAFYEALKYLIQKGYRKIAYCI 121 (260)
T ss_pred ChHHHHHHHHHHHHCCCceEEEEc
Confidence 346788999999999999876553
No 155
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.70 E-value=2e+02 Score=27.09 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHcCCceEEEEec
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVP 159 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP 159 (508)
.......+++|+.++||+.|.++..
T Consensus 99 ~~~a~~~~~~~l~~~g~~~i~~i~~ 123 (265)
T cd06290 99 NFQGGYLATQHLIDLGHRRIAHITG 123 (265)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 4567788999999999998765543
No 156
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=22.55 E-value=1.3e+02 Score=24.13 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEE
Q psy10457 114 LRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVF 157 (508)
Q Consensus 114 lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVF 157 (508)
.+.||||.++|.+.... .+..|..+++.++++|.+ +.+.
T Consensus 38 ~~~viid~~~v~~iDs~----g~~~L~~l~~~~~~~g~~-v~i~ 76 (99)
T cd07043 38 PRRLVLDLSGVTFIDSS----GLGVLLGAYKRARAAGGR-LVLV 76 (99)
T ss_pred CCEEEEECCCCCEEcch----hHHHHHHHHHHHHHcCCe-EEEE
Confidence 57899999999876552 466777888889999975 4433
No 157
>KOG3802|consensus
Probab=22.36 E-value=1.9e+02 Score=31.88 Aligned_cols=51 Identities=31% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCCcchhhHHHHHH-------hhCCCHHHHHHHHHHh-CCCCChHHHHH-HHHhcCCCC
Q psy10457 44 AEYDPGYSARVDFAL-------KLGYTEDLVQTALNKL-GPNPSHNELLA-ELIKLGAQV 94 (508)
Q Consensus 44 ~~~~~~~~~~~~f~~-------klgy~~~~v~~~l~kl-g~~~~~n~~l~-Eliklg~~~ 94 (508)
+|.......--+||+ |||||..||--||.+| |.+-.+-.|-. |-..|.++|
T Consensus 199 ~ed~~~leELEqFAK~FKqRRIkLGfTQaDVGlALG~lyGn~FSQTTIcRFEALqLSFKN 258 (398)
T KOG3802|consen 199 DEDTPDLEELEQFAKTFKQRRIKLGFTQADVGLALGALYGNVFSQTTICRFEALQLSFKN 258 (398)
T ss_pred cccccCHHHHHHHHHHHHhheeccccchhHHHHHHHhhhCcccchhhhhHhHhhccCHHH
Confidence 344444555556664 8999999999999887 55544444432 555565555
No 158
>PRK07682 hypothetical protein; Validated
Probab=21.98 E-value=2.7e+02 Score=28.46 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=33.3
Q ss_pred HHHHHHHH--HCCcEEecCCcccCCCcccccch-HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 175 QEVLSELE--KDRILVYTPSRLIGGKRLVCYDD-RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 175 ~~iL~eL~--k~g~Lv~TPSr~v~Gkr~~syDD-ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.+.|+++. +-..|+++...+.-|.-+ +.++ .-|+++|.+.|.+||.-|-|.|+...
T Consensus 144 ~~~l~~~~~~~~~~v~~~~p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 202 (378)
T PRK07682 144 PAQIEAAITAKTKAILLCSPNNPTGAVL-NKSELEEIAVIVEKHDLIVLSDEIYAELTYD 202 (378)
T ss_pred HHHHHhhcCcccEEEEEECCCCCcCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhcccC
Confidence 34444443 223444443333444322 2333 35778889999999999999998764
No 159
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=21.78 E-value=79 Score=28.55 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.5
Q ss_pred cEEEeccchhhhcCCCCccchHHHHHHHHHH
Q psy10457 116 PVVIDGSNVAMSHGNKELFSCIGIKICVDWF 146 (508)
Q Consensus 116 pIVIDGSNVAmshG~~k~FS~rGI~iAV~yF 146 (508)
.||+.|.-..--...++.|++.||..||-||
T Consensus 46 vvvvggCp~CrvG~le~~ft~~Gi~~AI~fF 76 (98)
T PF10164_consen 46 VVVVGGCPACRVGVLEDSFTCCGILCAIFFF 76 (98)
T ss_pred eEEecCCCCCceeeecccccHHHHHHHHHHH
Confidence 5777777766544557789999999999998
No 160
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.69 E-value=3.5e+02 Score=26.42 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecC
Q psy10457 143 VDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTP 191 (508)
Q Consensus 143 V~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TP 191 (508)
+.+|.+.|.. |+|+.|... ..|.+|.+.|.|.+..
T Consensus 25 ~~~Ll~~ga~-VtVvsp~~~-------------~~l~~l~~~~~i~~~~ 59 (205)
T TIGR01470 25 ARLLLKAGAQ-LRVIAEELE-------------SELTLLAEQGGITWLA 59 (205)
T ss_pred HHHHHHCCCE-EEEEcCCCC-------------HHHHHHHHcCCEEEEe
Confidence 6788999995 888888532 3366677777666643
No 161
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=21.57 E-value=5.4e+02 Score=26.84 Aligned_cols=130 Identities=19% Similarity=0.211 Sum_probs=66.4
Q ss_pred hhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEe--cccccccCCCCCCCChHHHHHHHHHCC----cEEecCCcccCC
Q psy10457 124 VAMSHGNKELFSCIGIKICVDWFRARGHKEITVFV--PKWRKESCRPDNLIKNQEVLSELEKDR----ILVYTPSRLIGG 197 (508)
Q Consensus 124 VAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFV--P~~Rk~~~r~d~~i~d~~iL~eL~k~g----~Lv~TPSr~v~G 197 (508)
+||.|+. ..|..+|+.+.+.|++.|+||- |++-.-. ....-..+-+.|.+.. -+.++++.
T Consensus 97 ~amry~~------P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t----~gs~~~~~~~~l~~~~~~~~~~~~i~~~---- 162 (322)
T TIGR00109 97 IAMRYGE------PFTEEAVKELLKDGVERAVVLPLYPHFSSST----TGSSFNELAEALKKLRSLRPTISVIESW---- 162 (322)
T ss_pred EeeccCC------CCHHHHHHHHHhcCCCeEEEEeCCccccccc----HHHHHHHHHHHHHhcccCCCeEEEeCcc----
Confidence 5777874 2456889999999999765442 3332211 0111222233344332 35555554
Q ss_pred CcccccchHHHHHHHHh----------CC--cEEEe-----------CCcchhhhhcCh-hHHHHHh-cceeeeEEeCCc
Q psy10457 198 KRLVCYDDRFILRLAAD----------TD--GIVVS-----------NDNYRDLCLESP-DFRKVVE-DRILMYSFVNDR 252 (508)
Q Consensus 198 kr~~syDDryILklA~e----------~d--GvIVS-----------NDnYRD~~~E~P-e~K~~Ie-eRlL~YTFvgD~ 252 (508)
..++.||=.+|.. .+ .+|+| .|-|.+...+.- .+.+-+. ...+..+|-. .
T Consensus 163 ----~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~~Gd~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS-~ 237 (322)
T TIGR00109 163 ----YDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPNEYRLTWQS-R 237 (322)
T ss_pred ----ccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhhCCCChHHHHHHHHHHHHHHcCCCCCeEEEEeC-C
Confidence 2334443222211 13 57887 688988766532 2223222 1234455543 2
Q ss_pred ccCCCCCCCCCCCChhhhhccccC
Q psy10457 253 FMPPEDPLGRSGPSLDKFLTIDYK 276 (508)
Q Consensus 253 FmPPdDPLGR~GP~Ld~fLr~~~~ 276 (508)
|-| .-=-||++++.|+.-..
T Consensus 238 ~g~----~~Wl~P~~~~~l~~l~~ 257 (322)
T TIGR00109 238 VGP----EPWLGPYTEELLEKLGE 257 (322)
T ss_pred CCC----CCcCCCCHHHHHHHHHH
Confidence 221 00128999999987654
No 162
>PRK08175 aminotransferase; Validated
Probab=21.46 E-value=3e+02 Score=28.53 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=34.6
Q ss_pred HHHHHHHHH-----CCcEEecCCcccCCCcccccch---HHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 175 QEVLSELEK-----DRILVYTPSRLIGGKRLVCYDD---RFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 175 ~~iL~eL~k-----~g~Lv~TPSr~v~Gkr~~syDD---ryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
.+.|+++.+ -++|+++...+.-| .+++. .-|+++|.+.|..||.-|-|.|+..
T Consensus 151 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG---~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~ 211 (395)
T PRK08175 151 FNELERAIRESYPKPKMMILGFPSNPTA---QCVELEFFEKVVALAKRYDVLVVHDLAYADIVY 211 (395)
T ss_pred HHHHHHHHhhccCCceEEEEeCCCCCCC---CCCCHHHHHHHHHHHHHcCcEEEEecchHhhcc
Confidence 344555443 24555552223334 23444 5788999999999999999999875
No 163
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=21.36 E-value=2.4e+02 Score=28.83 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhC-
Q psy10457 137 IGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADT- 215 (508)
Q Consensus 137 rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~- 215 (508)
.-|.--|+++++.|..+|++++- +.+ +.++.|.++--+.++=.. ....|..-|-+.+|.+.
T Consensus 32 plIErqI~~L~e~gI~dI~IVvG-Ylk------------E~FeYLkdKy~vtLvyN~-----kY~~yNn~ySlyla~d~l 93 (231)
T COG4750 32 PLIERQIEQLREAGIDDITIVVG-YLK------------EQFEYLKDKYDVTLVYNP-----KYREYNNIYSLYLARDFL 93 (231)
T ss_pred ccHHHHHHHHHHCCCceEEEEee-ehH------------HHHHHHHHhcCeEEEeCc-----hHHhhhhHHHHHHHHHHh
Confidence 45677789999999999887764 333 336777666555554211 12356777899999985
Q ss_pred -CcEEEeCCcc
Q psy10457 216 -DGIVVSNDNY 225 (508)
Q Consensus 216 -dGvIVSNDnY 225 (508)
+..|++-|+|
T Consensus 94 ~ntYiidsDny 104 (231)
T COG4750 94 NNTYIIDSDNY 104 (231)
T ss_pred cccEEeccchH
Confidence 9999999998
No 164
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=21.17 E-value=1.1e+02 Score=25.97 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=28.4
Q ss_pred CCCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCc
Q psy10457 111 QAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHK 152 (508)
Q Consensus 111 ~~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~ 152 (508)
+...+.||||-++|-+-.. -.+..|..+++.+..+|.+
T Consensus 45 ~~~~~~vIlD~s~v~~iDs----sgi~~L~~~~~~~~~~g~~ 82 (117)
T PF01740_consen 45 RQTIKNVILDMSGVSFIDS----SGIQALVDIIKELRRRGVQ 82 (117)
T ss_dssp SSSSSEEEEEETTESEESH----HHHHHHHHHHHHHHHTTCE
T ss_pred cccceEEEEEEEeCCcCCH----HHHHHHHHHHHHHHHCCCE
Confidence 4457899999999975433 1356677778889999986
No 165
>PF00157 Pou: Pou domain - N-terminal to homeobox domain; InterPro: IPR000327 POU proteins are eukaryotic transcription factors containing a bipartite DNA binding domain referred to as the POU domain. The acronym POU (pronounced 'pow') is derived from the names of three mammalian transcription factors, the pituitary-specific Pit-1, the octamer-binding proteins Oct-1 and Oct-2, and the neural Unc-86 from Caenorhabditis elegans. POU domain genes have been identified in diverse organisms including nematodes, flies, amphibians, fish and mammals but have not been yet identified in plants and fungi. The various members of the POU family have a wide variety of functions, all of which are related to the function of the neuroendocrine system [] and the development of an organism []. Some other genes are also regulated, including those for immunoglobulin light and heavy chains (Oct-2) [, ], and trophic hormone genes, such as those for prolactin and growth hormone (Pit-1). The POU domain is a bipartite domain composed of two subunits separated by a non-conserved region of 15-55 aa. The N-terminal subunit is known as the POU-specific (POUs) domain (IPR000327 from INTERPRO), while the C-terminal subunit is a homeobox domain (IPR007103 from INTERPRO). 3D structures of complexes including both POU subdomains bound to DNA are available. Both subdomains contain the structural motif 'helix-turn-helix', which directly associates with the two components of bipartite DNA binding sites, and both are required for high affinity sequence-specific DNA-binding. The domain may also be involved in protein-protein interactions []. The subdomains are connected by a flexible linker [, , ]. In proteins a POU-specific domain is always accompanied by a homeodomain. Despite of the lack of sequence homology, 3D structure of POUs is similar to 3D structure of bacteriophage lambda repressor and other members of HTH_3 family [, ]. This entry represents the POU-specific subunit of the POU domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3D1N_O 1AU7_A 3L1P_A 2XSD_C 1O4X_A 1HF0_B 1GT0_C 1POU_A 1CQT_B 1E3O_C ....
Probab=21.13 E-value=76 Score=27.28 Aligned_cols=17 Identities=53% Similarity=0.800 Sum_probs=13.0
Q ss_pred HhhCCCHHHHHHHHHHh
Q psy10457 58 LKLGYTEDLVQTALNKL 74 (508)
Q Consensus 58 ~klgy~~~~v~~~l~kl 74 (508)
.+||||.++|-.+|..+
T Consensus 21 i~LG~TQ~dVg~al~~~ 37 (75)
T PF00157_consen 21 IKLGYTQADVGAALGRL 37 (75)
T ss_dssp HHTT--HHHHHHHHHHH
T ss_pred hhcccCHHHHhHHHHHh
Confidence 47999999999999765
No 166
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=21.01 E-value=2.4e+02 Score=27.79 Aligned_cols=84 Identities=7% Similarity=0.016 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD 214 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e 214 (508)
+..+...+++|+.+.||+.|.++...-... ........+...|.+.|+ .+...+.+.......-..+.++-.+
T Consensus 162 n~~~~~~~~~~L~~~G~~~I~~i~~~~~~~----~~~~R~~Gf~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~ 234 (327)
T TIGR02417 162 DVDAAAELIERLLSQHADEFWYLGAQPELS----VSRDRLAGFRQALKQATL---EVEWVYGGNYSRESGYQMFAKLCAR 234 (327)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeCcccch----hHHHHHHHHHHHHHHcCC---ChHhEEeCCCChHHHHHHHHHHHhc
Q ss_pred ----CCcEEEeCCcc
Q psy10457 215 ----TDGIVVSNDNY 225 (508)
Q Consensus 215 ----~dGvIVSNDnY 225 (508)
.+|+|+.||.+
T Consensus 235 ~~~~~~Ai~~~~D~~ 249 (327)
T TIGR02417 235 LGRLPQALFTTSYTL 249 (327)
T ss_pred CCCCCcEEEEcCcHH
No 167
>PRK07550 hypothetical protein; Provisional
Probab=20.81 E-value=3.7e+02 Score=27.66 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=34.3
Q ss_pred hHHHHHHHHHC--CcEE-ecCCcccCCCcccccchH-HHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 174 NQEVLSELEKD--RILV-YTPSRLIGGKRLVCYDDR-FILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 174 d~~iL~eL~k~--g~Lv-~TPSr~v~Gkr~~syDDr-yILklA~e~dGvIVSNDnYRD~~~E 231 (508)
+.+.|+++.+. ..|+ .+|+ +.-|..+ +.+++ -|+++|.+.|.+||.-|=|.|+...
T Consensus 152 ~~~~l~~~~~~~~~~v~~~~P~-NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~ 211 (386)
T PRK07550 152 DPAAAEALITPRTRAIALVTPN-NPTGVVY-PPELLHELYDLARRHGIALILDETYRDFDSG 211 (386)
T ss_pred CHHHHHHHhcccCcEEEEeCCC-CCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhhccC
Confidence 45556665443 2434 4454 3444322 22223 5788999999999999999887543
No 168
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.69 E-value=2.5e+02 Score=26.52 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+.+++.+.||+.|.++.
T Consensus 106 ~~~~~~~~~~~l~~~g~~~i~~i~ 129 (273)
T cd06292 106 DALAMRLAVRHLVALGHRRIGFAS 129 (273)
T ss_pred cHHHHHHHHHHHHHCCCceEEEEe
Confidence 567888999999999999865554
No 169
>PRK07337 aminotransferase; Validated
Probab=20.24 E-value=3.1e+02 Score=28.22 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCcEEEeCCcchhhhhc
Q psy10457 206 RFILRLAADTDGIVVSNDNYRDLCLE 231 (508)
Q Consensus 206 ryILklA~e~dGvIVSNDnYRD~~~E 231 (508)
.-|+++|.+.+++||.=|-|.|+..+
T Consensus 186 ~~i~~~a~~~~~~ii~De~y~~~~~~ 211 (388)
T PRK07337 186 RRIVEAVRARGGFTIVDEIYQGLSYD 211 (388)
T ss_pred HHHHHHHHHCCCEEEEeccccccccC
Confidence 35789999999999998888887653
No 170
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=20.04 E-value=2.2e+02 Score=26.74 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHcCCceEEEEe
Q psy10457 136 CIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 136 ~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
..+...+++++.++||+.|.++.
T Consensus 101 ~~~~~~~~~~l~~~g~~~I~~i~ 123 (265)
T cd06299 101 QPGMTEAVSLLVALGHKKIGYIS 123 (265)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEe
Confidence 56788999999999999876654
Done!