Query psy10457
Match_columns 508
No_of_seqs 186 out of 296
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:41:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v33_A Ribonuclease ZC3H12A; r 100.0 5.7E-79 2E-83 588.4 13.9 205 108-312 18-223 (223)
2 3v32_B Ribonuclease ZC3H12A; r 100.0 1.8E-60 6.3E-65 448.8 14.9 167 109-275 19-185 (185)
3 4g26_A Pentatricopeptide repea 99.7 7.7E-17 2.6E-21 168.2 10.9 127 112-250 320-452 (501)
4 3ix7_A Uncharacterized protein 90.4 0.3 1E-05 43.8 5.0 45 176-225 63-107 (134)
5 1ul1_X Flap endonuclease-1; pr 87.7 1.8 6.1E-05 44.2 9.1 101 115-224 28-179 (379)
6 1a76_A Flap endonuclease-1 pro 82.2 5.9 0.0002 39.3 9.7 100 115-223 22-173 (326)
7 1exn_A 5'-exonuclease, 5'-nucl 81.2 1.3 4.6E-05 44.1 4.6 106 113-230 18-157 (290)
8 1ixs_A Holliday junction DNA h 80.5 2.8 9.4E-05 32.9 5.3 39 51-89 18-59 (62)
9 2d9m_A Zinc finger CCCH-type d 80.5 0.54 1.8E-05 38.3 1.2 27 282-318 21-49 (69)
10 1vg5_A RSGI RUH-014, rhomboid 76.6 7.3 0.00025 31.7 6.8 41 46-88 25-65 (73)
11 2cp8_A NEXT to BRCA1 gene 1 pr 76.4 6 0.0002 30.8 5.9 45 47-93 6-51 (54)
12 2qip_A Protein of unknown func 73.3 6.1 0.00021 35.2 6.2 104 116-231 13-124 (165)
13 2izo_A FEN1, flap structure-sp 72.8 7.6 0.00026 39.0 7.4 101 115-224 19-171 (346)
14 1m9o_A Tristetraproline; Cys3H 71.8 2.5 8.4E-05 33.3 2.9 23 281-303 12-37 (77)
15 1m9o_A Tristetraproline; Cys3H 70.8 1.1 3.6E-05 35.4 0.5 23 281-303 50-75 (77)
16 3h7i_A Ribonuclease H, RNAse H 70.3 26 0.00088 35.5 10.5 107 113-230 12-160 (305)
17 1b43_A Protein (FEN-1); nuclea 70.1 22 0.00074 35.5 10.0 101 115-224 22-174 (340)
18 3i8o_A KH domain-containing pr 66.7 3.3 0.00011 37.6 2.9 38 203-249 93-130 (142)
19 2cqe_A KIAA1064 protein; CCCH 65.8 1.7 5.9E-05 36.7 0.9 23 281-303 36-61 (98)
20 1rxw_A Flap structure-specific 65.8 14 0.00047 36.8 7.5 48 115-162 22-87 (336)
21 1tte_A Ubiquitin-conjugating e 65.6 4.7 0.00016 38.5 3.9 39 51-89 170-215 (215)
22 3ezq_B Protein FADD; apoptosis 64.2 9.5 0.00032 33.5 5.3 39 54-92 21-78 (122)
23 1fad_A Protein (FADD protein); 63.9 6.1 0.00021 32.6 3.8 38 54-91 29-85 (99)
24 2dah_A Ubiquilin-3; UBA domain 63.4 17 0.0006 27.6 6.0 45 46-92 5-50 (54)
25 1o4w_A PIN (PILT N-terminus) d 63.2 3.5 0.00012 35.9 2.4 23 203-228 99-121 (147)
26 1z96_A DNA-damage, UBA-domain 60.7 10 0.00036 26.1 4.0 30 48-77 2-31 (40)
27 2w84_A Peroxisomal membrane pr 58.4 11 0.00038 30.8 4.3 29 50-78 35-63 (70)
28 1cuk_A RUVA protein; DNA repai 57.9 12 0.00043 35.3 5.3 38 52-89 162-200 (203)
29 2lhn_A Nuclear polyadenylated 61.6 2.3 7.8E-05 35.4 0.0 21 283-304 54-74 (80)
30 1ich_A TNF-1, tumor necrosis f 54.5 13 0.00046 32.5 4.5 40 52-91 27-86 (112)
31 3ory_A Flap endonuclease 1; hy 54.3 55 0.0019 33.3 9.7 102 114-224 35-188 (363)
32 2lhn_A Nuclear polyadenylated 59.2 2.7 9.2E-05 35.0 0.0 21 281-302 31-51 (80)
33 3q8k_A Flap endonuclease 1; he 54.0 19 0.00064 36.4 6.1 37 179-224 142-179 (341)
34 2yqf_A Ankyrin-1; death domain 53.8 19 0.00066 30.4 5.3 40 54-93 33-91 (111)
35 2cqe_A KIAA1064 protein; CCCH 51.9 6.3 0.00022 33.2 2.0 21 281-301 13-35 (98)
36 2ztd_A Holliday junction ATP-d 50.5 19 0.00066 34.4 5.3 38 52-89 166-206 (212)
37 3u43_A Colicin-E2 immunity pro 49.4 20 0.00067 30.7 4.6 66 61-151 9-80 (94)
38 2knz_A Ubiquilin-4; cytoplasm, 49.4 34 0.0011 25.7 5.5 42 47-90 8-50 (53)
39 2jy5_A Ubiquilin-1; UBA, alter 49.2 25 0.00084 26.4 4.7 39 47-87 9-48 (52)
40 2lcq_A Putative toxin VAPC6; P 47.5 6.5 0.00022 35.1 1.4 37 202-247 83-119 (165)
41 3ff5_A PEX14P, peroxisomal bio 45.4 19 0.00063 28.0 3.5 24 50-73 30-53 (54)
42 3oq9_A Tumor necrosis factor r 44.9 24 0.00081 29.4 4.4 38 54-91 16-72 (86)
43 1dbq_A Purine repressor; trans 44.2 31 0.0011 31.3 5.5 85 135-226 110-199 (289)
44 1unk_A Colicin E7; immunity pr 43.2 42 0.0014 28.4 5.6 64 61-149 9-78 (87)
45 1axh_A Atracotoxin-HVI, ACTX-H 42.9 5.5 0.00019 28.8 0.2 27 281-308 8-34 (37)
46 2ib1_A Death domain containing 41.5 33 0.0011 28.5 4.7 39 54-92 22-74 (91)
47 1vej_A Riken cDNA 4931431F19; 40.8 60 0.0021 26.4 6.1 41 47-89 26-67 (74)
48 1ify_A HHR23A, UV excision rep 40.7 24 0.00083 26.1 3.4 31 47-77 5-35 (49)
49 2of5_A Death domain-containing 40.6 27 0.00093 30.1 4.3 39 54-92 39-96 (114)
50 2o71_A Death domain-containing 39.9 30 0.001 30.0 4.4 39 54-92 39-96 (115)
51 1v96_A Hypothetical protein PH 39.8 13 0.00045 31.5 2.1 28 201-228 94-123 (149)
52 3qe9_Y Exonuclease 1; exonucle 39.6 83 0.0028 31.8 8.3 102 114-224 24-172 (352)
53 3dbo_B Uncharacterized protein 38.2 18 0.00062 31.9 2.8 27 202-230 112-138 (150)
54 3bbl_A Regulatory protein of L 38.2 22 0.00076 32.6 3.5 85 135-226 109-200 (287)
55 2o20_A Catabolite control prot 37.0 30 0.001 32.7 4.3 84 135-225 164-250 (332)
56 3e61_A Putative transcriptiona 35.0 31 0.001 31.2 3.9 83 135-226 106-189 (277)
57 1w8i_A Putative VAPC ribonucle 35.0 15 0.00052 31.7 1.8 28 201-230 99-126 (156)
58 2of5_H Leucine-rich repeat and 34.7 44 0.0015 28.6 4.6 38 54-91 28-85 (118)
59 1wxp_A THO complex subunit 1; 34.3 29 0.00098 29.3 3.3 39 54-92 33-89 (110)
60 2kuo_A Aprataxin and PNK-like 34.0 12 0.00041 32.0 0.9 28 277-304 57-87 (91)
61 3hcw_A Maltose operon transcri 33.9 33 0.0011 31.6 4.0 81 135-225 115-203 (295)
62 2fep_A Catabolite control prot 33.7 35 0.0012 31.4 4.1 85 135-226 117-207 (289)
63 2rgy_A Transcriptional regulat 33.4 31 0.0011 31.7 3.7 24 135-158 112-135 (290)
64 2d9s_A CBL E3 ubiquitin protei 33.3 63 0.0021 25.1 4.7 39 50-88 9-48 (53)
65 2gf5_A FADD protein; death dom 32.5 55 0.0019 30.1 5.2 38 54-91 113-169 (191)
66 2kqb_A Aprataxin and PNK-like 32.4 12 0.0004 31.9 0.6 25 278-302 53-80 (89)
67 3tnd_A TRNA(FMet)-specific end 31.9 29 0.00099 28.6 2.9 22 202-223 95-116 (132)
68 1fr2_A Colicin E9 immunity pro 31.8 55 0.0019 27.4 4.6 63 62-149 10-77 (86)
69 2hsg_A Glucose-resistance amyl 31.6 40 0.0014 31.7 4.2 84 135-225 161-250 (332)
70 3dbi_A Sugar-binding transcrip 31.2 42 0.0014 31.6 4.3 85 135-226 165-254 (338)
71 3e46_A Ubiquitin-conjugating e 30.4 75 0.0026 31.0 6.0 41 47-89 212-252 (253)
72 3gv0_A Transcriptional regulat 30.3 58 0.002 29.8 5.0 85 135-226 111-200 (288)
73 3k9o_A Ubiquitin-conjugating e 30.3 77 0.0026 29.3 5.8 40 47-88 160-199 (201)
74 1ixr_A Holliday junction DNA h 30.3 11 0.00037 35.4 0.0 36 52-87 148-186 (191)
75 3h5o_A Transcriptional regulat 30.0 44 0.0015 31.6 4.2 47 135-186 162-208 (339)
76 1byk_A Protein (trehalose oper 29.9 74 0.0025 28.3 5.5 24 135-158 99-122 (255)
77 3zvk_A VAPC2, toxin of toxin-a 29.3 26 0.0009 29.0 2.2 22 202-223 96-117 (134)
78 3kke_A LACI family transcripti 29.1 37 0.0012 31.5 3.4 24 135-158 115-138 (303)
79 2h1c_A Trafficking protein B; 29.1 24 0.00081 28.9 1.9 22 202-223 101-122 (139)
80 3h87_A Putative uncharacterize 28.4 33 0.0011 30.6 2.9 27 202-230 111-137 (156)
81 2qu7_A Putative transcriptiona 28.4 47 0.0016 30.2 4.0 24 135-158 106-129 (288)
82 3k4h_A Putative transcriptiona 28.3 45 0.0015 30.3 3.8 25 135-159 115-139 (292)
83 3clk_A Transcription regulator 28.1 36 0.0012 31.2 3.1 85 135-226 109-197 (290)
84 1qpz_A PURA, protein (purine n 28.0 47 0.0016 31.4 4.0 85 135-226 161-250 (340)
85 3e3m_A Transcriptional regulat 27.5 67 0.0023 30.6 5.0 25 135-159 171-195 (355)
86 2fe1_A Conserved hypothetical 27.4 24 0.00083 30.6 1.7 22 202-223 122-143 (156)
87 3miz_A Putative transcriptiona 26.8 28 0.00096 32.1 2.2 24 135-158 115-138 (301)
88 3brq_A HTH-type transcriptiona 26.6 47 0.0016 30.1 3.6 24 135-158 123-146 (296)
89 3bil_A Probable LACI-family tr 26.6 79 0.0027 30.2 5.4 23 135-157 168-190 (348)
90 3qk7_A Transcriptional regulat 26.6 60 0.002 29.9 4.4 24 135-158 110-133 (294)
91 3gyb_A Transcriptional regulat 26.1 79 0.0027 28.5 5.0 82 135-226 102-188 (280)
92 1v8p_A Hypothetical protein PA 25.9 47 0.0016 29.6 3.4 38 202-239 114-152 (158)
93 1veg_A NEDD8 ultimate buster-1 25.7 2.4E+02 0.0082 23.4 7.4 39 50-90 29-67 (83)
94 1x3u_A Transcriptional regulat 25.4 1.4E+02 0.0049 22.2 5.7 40 54-94 35-78 (79)
95 3jvd_A Transcriptional regulat 24.9 45 0.0015 31.7 3.3 82 135-226 158-243 (333)
96 2ooa_A E3 ubiquitin-protein li 24.7 76 0.0026 24.6 3.8 27 52-78 13-39 (52)
97 2dak_A Ubiquitin carboxyl-term 24.5 1E+02 0.0035 23.6 4.7 28 50-77 9-36 (63)
98 2g3q_A Protein YBL047C; endocy 24.1 80 0.0027 22.2 3.7 27 51-77 5-31 (43)
99 3d8u_A PURR transcriptional re 23.8 62 0.0021 29.1 3.8 24 135-158 104-127 (275)
100 4dvc_A Thiol:disulfide interch 23.8 50 0.0017 28.1 3.1 30 116-148 153-182 (184)
101 2e5s_A Otthump00000018578; ZF- 23.7 26 0.0009 29.5 1.2 22 281-303 56-79 (98)
102 3k9c_A Transcriptional regulat 23.6 58 0.002 29.9 3.7 83 135-226 110-197 (289)
103 3cs3_A Sugar-binding transcrip 23.4 98 0.0034 28.0 5.1 24 135-158 102-125 (277)
104 3kjx_A Transcriptional regulat 23.1 44 0.0015 31.7 2.8 87 135-225 169-258 (344)
105 1bgx_T TAQ DNA polymerase; DNA 22.9 81 0.0028 35.6 5.3 103 114-224 12-143 (832)
106 3h5t_A Transcriptional regulat 22.7 1E+02 0.0034 29.4 5.3 24 135-158 173-196 (366)
107 2ekk_A UBA domain from E3 ubiq 22.6 1.7E+02 0.0057 21.0 5.3 26 50-75 9-34 (47)
108 4ae4_A Ubiquitin-associated pr 22.0 1.3E+02 0.0044 26.2 5.3 39 49-89 75-113 (118)
109 1jye_A Lactose operon represso 21.8 84 0.0029 29.9 4.5 24 135-158 163-186 (349)
110 3c3k_A Alanine racemase; struc 21.8 1.3E+02 0.0044 27.4 5.6 24 135-158 108-131 (285)
111 1gxg_A Colicin E8 immunity pro 21.7 2.2E+02 0.0075 23.7 6.4 64 61-149 9-76 (85)
112 4fe7_A Xylose operon regulator 21.7 1.1E+02 0.0037 30.2 5.3 24 135-158 123-146 (412)
113 3egc_A Putative ribose operon 21.5 83 0.0029 28.6 4.3 87 135-226 109-198 (291)
114 3l49_A ABC sugar (ribose) tran 21.3 1.2E+02 0.004 27.5 5.1 23 135-157 107-131 (291)
115 3d0w_A YFLH protein; GRAM-posi 20.8 13 0.00045 32.4 -1.2 43 51-93 37-87 (104)
116 2h0a_A TTHA0807, transcription 20.7 47 0.0016 29.9 2.4 24 135-158 98-121 (276)
117 2bwb_A Ubiquitin-like protein 20.4 1.1E+02 0.0036 22.5 3.8 30 48-77 5-35 (46)
118 1whc_A RSGI RUH-027, UBA/UBX 3 20.4 59 0.002 25.3 2.5 38 51-89 10-47 (64)
119 4ae4_A Ubiquitin-associated pr 20.4 1.4E+02 0.0047 26.0 5.2 42 47-90 5-46 (118)
120 3tvt_A Disks large 1 tumor sup 20.1 56 0.0019 32.2 2.9 40 213-261 252-291 (292)
121 3shw_A Tight junction protein 20.1 98 0.0034 32.7 4.9 41 209-253 343-384 (468)
No 1
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-79 Score=588.36 Aligned_cols=205 Identities=63% Similarity=1.144 Sum_probs=160.3
Q ss_pred CCCCCCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcE
Q psy10457 108 PYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRIL 187 (508)
Q Consensus 108 ~~~~~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~L 187 (508)
.+..+.+|+|||||+||||+||+++.|||+||.+||+||++|||++|+||+|+||++..+++.+++|+++|.+|+++|+|
T Consensus 18 ~~~~~~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L 97 (223)
T 3v33_A 18 EKEGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKIL 97 (223)
T ss_dssp -----CBCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHTTTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCE
T ss_pred cCCcccCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHcCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCE
Confidence 34678999999999999999999999999999999999999999989999999999887788889999999999999999
Q ss_pred EecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCCCCCCCh
Q psy10457 188 VYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSL 267 (508)
Q Consensus 188 v~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLGR~GP~L 267 (508)
++||++++.|++++||||+|||++|.++||+|||||+||||+.++|+||+||++|+|+|||+||+||||||||||+||+|
T Consensus 98 ~~TPs~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~e~p~~k~~Ie~rlI~ytFv~D~FmppdDplgR~Gp~l 177 (223)
T 3v33_A 98 VFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSL 177 (223)
T ss_dssp EEECEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHTTCHHHHHHHHHHEECCEEETTEEECCSSTTCTTSCCH
T ss_pred EECCCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHhhCHHHHHHHHhCeeeEEEECCEEeCCCCcccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCC-CCCCCCCCcccCCCcccccCCCCCCCCchhHH
Q psy10457 268 DKFLTIDYKQNST-GAPCPYGRKCTYGSKCKFNHPERGPWPHKTVT 312 (508)
Q Consensus 268 d~fLr~~~~~~~~-~~~cpy~~kctyg~kck~~hp~r~~~~~~~v~ 312 (508)
++|||+++..++. +|+||||||||||+|||||||||++++|+|||
T Consensus 178 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (223)
T 3v33_A 178 DNFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFHPERPSCPQRSVA 223 (223)
T ss_dssp HHHTBSCC--------------------------------------
T ss_pred HHHhccCCCCcccCCCCCCCCcccccCCcceecCCccCCccccccC
Confidence 9999999988875 99999999999999999999999999999996
No 2
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=100.00 E-value=1.8e-60 Score=448.78 Aligned_cols=167 Identities=66% Similarity=1.152 Sum_probs=152.7
Q ss_pred CCCCCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEE
Q psy10457 109 YPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILV 188 (508)
Q Consensus 109 ~~~~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv 188 (508)
+.++.+|+||||||||||+||+++.|||+||.+||+||++|||++|+||+|+||++..+++.+++|+++|.+|+++|+|+
T Consensus 19 ~~~~~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~ 98 (185)
T 3v32_B 19 KEGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILV 98 (185)
T ss_dssp ----CBCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHHTTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEE
T ss_pred cCCCCCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHcCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEE
Confidence 46779999999999999999999999999999999999999999999999999998877888899999999999999999
Q ss_pred ecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCCCCCCChh
Q psy10457 189 YTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLD 268 (508)
Q Consensus 189 ~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLGR~GP~Ld 268 (508)
+||++++.|++++||||+|||++|.++||+|||||+||||+.++|+||+||++|+|+|||++|+||||||||||+||+|+
T Consensus 99 ~TPs~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~~p~~k~~Ie~rli~ytFv~d~Fmp~~dplgr~gp~l~ 178 (185)
T 3v32_B 99 FTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLD 178 (185)
T ss_dssp EECCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHHCHHHHHHHHHHEECCEEETTEEECCSSTTTTSSCCHH
T ss_pred ECCCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhhCHHHHHHHHhCcceeEEECCEEcCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccc
Q psy10457 269 KFLTIDY 275 (508)
Q Consensus 269 ~fLr~~~ 275 (508)
+|||++|
T Consensus 179 ~~l~~~~ 185 (185)
T 3v32_B 179 NFLRKKP 185 (185)
T ss_dssp HHTBSCC
T ss_pred HHhccCC
Confidence 9999975
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.68 E-value=7.7e-17 Score=168.17 Aligned_cols=127 Identities=23% Similarity=0.254 Sum_probs=103.1
Q ss_pred CCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHc---CCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEE
Q psy10457 112 AKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRAR---GHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILV 188 (508)
Q Consensus 112 ~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~R---Gh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv 188 (508)
..+..+||||.|||++.++ .|+...|..+|+.+... |.. .+|+++.-+..... .....+..++++|.+.+.++
T Consensus 320 ~~p~d~vIDG~NV~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~-~lv~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 395 (501)
T 4g26_A 320 HGPFDAVIDGANMGLVNQR--SFSFFQLNNTVQRCQQISPSKRL-PLVILHKSRVNGGP-ATYPKNRALLEKWKNAGALY 395 (501)
T ss_dssp SCCCSEEEEHHHHHHTTCS--SCCHHHHHHHHHHHHHHSTTCCC-CEEEEEHHHHTSGG-GSSHHHHHHHHHHHHTTCEE
T ss_pred cCCchhhhccchhhccccc--cccHHHHHHHHHHHHHHhhccCC-cEEEeehhhhcccc-cCCHHHHHHHHHHHhcCeEE
Confidence 4567899999999987664 68999999998887764 554 46677654433211 11234678899999999999
Q ss_pred ecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhc---ChhHHHHHhcceeeeEEeC
Q psy10457 189 YTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE---SPDFRKVVEDRILMYSFVN 250 (508)
Q Consensus 189 ~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E---~Pe~K~~IeeRlL~YTFvg 250 (508)
+||.+ ++||+|||++|...++.|||||+||||... ..-|++|.+.|++.|+|..
T Consensus 396 ~t~~~--------s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~ 452 (501)
T 4g26_A 396 ATPPG--------SNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTR 452 (501)
T ss_dssp EECTT--------CCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEET
T ss_pred eCCCC--------CCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecC
Confidence 99998 999999999999999999999999999984 3458999999999999973
No 4
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=90.42 E-value=0.3 Score=43.85 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=32.7
Q ss_pred HHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcc
Q psy10457 176 EVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNY 225 (508)
Q Consensus 176 ~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnY 225 (508)
++|.+|.+.+-+.+.. ....+ ...|..|+++|.+.+|+|||||.-
T Consensus 63 ~iL~~L~~~~~vei~~-~~~~~----~~vD~~ll~lA~~~~~~lvTnD~~ 107 (134)
T 3ix7_A 63 ETLERLREAAPLEVLE-TTPKG----ESVDEKLLFLARDLEAALVTNDHA 107 (134)
T ss_dssp HHHHHHHHHSCEEEEC-CCCSC----SSHHHHHHHHHHHTTCEEEESCHH
T ss_pred HHHHHHHhcCCEEEeC-CCCCc----ccHHHHHHHHHHHhCCEEEeCCHH
Confidence 5566666655566664 21111 467999999999999999999976
No 5
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=87.66 E-value=1.8 Score=44.22 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=58.3
Q ss_pred CcEEEeccchhhh--cCCC----------Ccc--chHHHHHHHHHHHHcCCceEEEEe---cccccccC------CCCC-
Q psy10457 115 RPVVIDGSNVAMS--HGNK----------ELF--SCIGIKICVDWFRARGHKEITVFV---PKWRKESC------RPDN- 170 (508)
Q Consensus 115 RpIVIDGSNVAms--hG~~----------k~F--S~rGI~iAV~yF~~RGh~~VvVFV---P~~Rk~~~------r~d~- 170 (508)
+.|+|||++..|. ++.. +.+ .+.|+..-+..+.+.|++++.||+ |.+|.+.- |...
T Consensus 28 ~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~ 107 (379)
T 1ul1_X 28 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAE 107 (379)
T ss_dssp CCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTTCCEEEEECCSCCSCCCCCCCCC--------
T ss_pred CEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHCCCCeEEEEeCCCcccccchHHHHHhhhhHHH
Confidence 5899999998763 2210 111 244554444456677999999998 44543210 1000
Q ss_pred --------------------------CCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCcE-EEeCC
Q psy10457 171 --------------------------LIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGI-VVSND 223 (508)
Q Consensus 171 --------------------------~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGv-IVSND 223 (508)
..--..+.+.|...|+-+++-. ..+|-.|..+|..-..+ |||+|
T Consensus 108 ~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~ap---------gEADd~iA~La~~g~~~~iiS~D 178 (379)
T 1ul1_X 108 KQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAP---------SEAEASCAALVKAGKVYAAATED 178 (379)
T ss_dssp ---------------------CCCCCCSCHHHHHHHHHHHTCCEEECS---------SCHHHHHHHHHHHTSSSEEECSC
T ss_pred HHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCC---------CcHHHHHHHHHhcCCeEEEEecC
Confidence 0001223344456677666533 26899999999986654 88988
Q ss_pred c
Q psy10457 224 N 224 (508)
Q Consensus 224 n 224 (508)
.
T Consensus 179 ~ 179 (379)
T 1ul1_X 179 M 179 (379)
T ss_dssp T
T ss_pred c
Confidence 4
No 6
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=82.19 E-value=5.9 Score=39.30 Aligned_cols=100 Identities=21% Similarity=0.152 Sum_probs=57.2
Q ss_pred CcEEEeccchhhhc--------CC-----CCc--cchHHHHHHHHHHHHcCCceEEEEe---ccccccc------CCCCC
Q psy10457 115 RPVVIDGSNVAMSH--------GN-----KEL--FSCIGIKICVDWFRARGHKEITVFV---PKWRKES------CRPDN 170 (508)
Q Consensus 115 RpIVIDGSNVAmsh--------G~-----~k~--FS~rGI~iAV~yF~~RGh~~VvVFV---P~~Rk~~------~r~d~ 170 (508)
+.|+|||++..+.. |. .+. -.+.|+..-+..+...|+++|+||+ |.+|.+. .|...
T Consensus 22 ~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~R~~~ 101 (326)
T 1a76_A 22 KKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKA 101 (326)
T ss_dssp CEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCCSSCCCCSSCCSSCSSSCSS
T ss_pred CEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHHCCCeEEEEEeCcCcccchhhHHHHHHHHHhh
Confidence 58999999986531 10 011 1234543333344578999999998 4444321 01111
Q ss_pred C--CC------------------------h-HHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh-CCcEEEeC
Q psy10457 171 L--IK------------------------N-QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD-TDGIVVSN 222 (508)
Q Consensus 171 ~--i~------------------------d-~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-~dGvIVSN 222 (508)
+ .. - ..+.+.|...|+-+++-.+ .+|-.|..+|.. ....|||+
T Consensus 102 ~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg---------EAD~~ia~La~~g~~~~I~S~ 172 (326)
T 1a76_A 102 ELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPS---------EGEAQASYMAKKGDVWAVVSQ 172 (326)
T ss_dssp CSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSS---------CHHHHHHHHHHTTSSSEEECS
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCc---------cHHHHHHHHHHCCCEEEEecC
Confidence 0 00 1 1233445667876665332 588899999987 33578999
Q ss_pred C
Q psy10457 223 D 223 (508)
Q Consensus 223 D 223 (508)
|
T Consensus 173 D 173 (326)
T 1a76_A 173 D 173 (326)
T ss_dssp S
T ss_pred C
Confidence 8
No 7
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=81.17 E-value=1.3 Score=44.15 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=62.5
Q ss_pred CCCcEEEeccchhhh--cCCCCccchHHHHHHHHHHHHcCCce---EEEEe---cccccccCCCCCC-----CC------
Q psy10457 113 KLRPVVIDGSNVAMS--HGNKELFSCIGIKICVDWFRARGHKE---ITVFV---PKWRKESCRPDNL-----IK------ 173 (508)
Q Consensus 113 ~lRpIVIDGSNVAms--hG~~k~FS~rGI~iAV~yF~~RGh~~---VvVFV---P~~Rk~~~r~d~~-----i~------ 173 (508)
..+.++|||+|.+|. |...+..-+.|+...+..+.+. ++. ++||+ |.||.+.- ++-+ ..
T Consensus 18 ~~~lllIDg~~llyRa~~~~~G~pav~Gf~~~l~~ll~~-~~p~~~vvvFD~~~~tfR~~~~-~~YKa~R~~~p~~~~~~ 95 (290)
T 1exn_A 18 RRNLMIVDGTNLGFRFKHNNSKKPFASSYVSTIQSLAKS-YSARTTIVLGDKGKSVFRLEHL-PEYKGNRDEKYAQRTEE 95 (290)
T ss_dssp -CEEEEEEHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHH-TTEEEEEEECCBSCCHHHHHHC-TTTTHHHHHHHHTSCHH
T ss_pred CCCEEEEECcHHHHHHHhCCCCchHHHHHHHHHHHHHHH-cCCCeEEEEEcCCCchhhhhCc-HHHHcCCCCCCcccccc
Confidence 346899999999874 2222222677877777766655 333 67787 45765421 0111 01
Q ss_pred -h------HHHHHHH-HH--CCcEEecCCcccCCCcccccchHHHHHHHHh-----CCcEEEeCCcchhhhh
Q psy10457 174 -N------QEVLSEL-EK--DRILVYTPSRLIGGKRLVCYDDRFILRLAAD-----TDGIVVSNDNYRDLCL 230 (508)
Q Consensus 174 -d------~~iL~eL-~k--~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-----~dGvIVSNDnYRD~~~ 230 (508)
+ -..+.++ .. .|+-++.-.+ -.+|-.|-.+|.. ...+|||.|. |+.+
T Consensus 96 ~e~L~~q~~~~ikell~~~~~gip~i~~~g--------~EADDviatLa~~~~~~G~~v~IvS~Dk--Dl~Q 157 (290)
T 1exn_A 96 EKALDEQFFEYLKDAFELCKTTFPTFTIRG--------VEADDMAAYIVKLIGHLYDHVWLISTDG--DWDT 157 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCEECCTT--------BCHHHHHHHHHHHHGGGSSCEEEECSCG--GGGG
T ss_pred chhHHHhhHHHHHHHHHhhCCCCcEEEECC--------cCHHHHHHHHHHHHHHCCCcEEEEeCCC--Chhh
Confidence 1 1223333 33 5887776444 4688899898876 2457999994 5544
No 8
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=80.55 E-value=2.8 Score=32.93 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=30.6
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHh---CCCCChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKL---GPNPSHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~kl---g~~~~~n~~l~Elik 89 (508)
..-++-..-|||++.++..++.++ +++.+..++|.+-+|
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 345677788999999999999998 446677777777665
No 9
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.47 E-value=0.54 Score=38.31 Aligned_cols=27 Identities=33% Similarity=0.693 Sum_probs=22.4
Q ss_pred CCCCC--CCcccCCCcccccCCCCCCCCchhHHHHHHHH
Q psy10457 282 APCPY--GRKCTYGSKCKFNHPERGPWPHKTVTERLMEH 318 (508)
Q Consensus 282 ~~cpy--~~kctyg~kck~~hp~r~~~~~~~v~~~l~~~ 318 (508)
.+|.+ ...|.||++|.|-|-+ +||++-
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~----------~ELr~~ 49 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGN----------AELHEW 49 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSH----------HHHHHH
T ss_pred ccCcccCcCCCCCCCccCCcCCH----------HHHhhH
Confidence 67887 2389999999999988 788883
No 10
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=76.57 E-value=7.3 Score=31.68 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCcchhhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHH
Q psy10457 46 YDPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELI 88 (508)
Q Consensus 46 ~~~~~~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Eli 88 (508)
..+++..+|+-..-+||+++++..+|.+-+- +.+.-+.=|+
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~--nve~Ave~Ll 65 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADD--DLTVAVEILM 65 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTS--CHHHHHHHHH
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 3677889999999999999999999999875 4555555554
No 11
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.37 E-value=6 Score=30.78 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.5
Q ss_pred CcchhhHHHHHHhhCC-CHHHHHHHHHHhCCCCChHHHHHHHHhcCCC
Q psy10457 47 DPGYSARVDFALKLGY-TEDLVQTALNKLGPNPSHNELLAELIKLGAQ 93 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy-~~~~v~~~l~klg~~~~~n~~l~Eliklg~~ 93 (508)
...|..+++-....|| .++.-.+||.+.|- +++.++.||++++..
T Consensus 6 ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~g--nv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQLNLRLLKKHNY--NILQVVTELLQLSGP 51 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHHHHHHHHTTTTT--CHHHHHHHHHHHSSS
T ss_pred HHhhHHHHHHHHHcCCCcHHHHHHHHHHcCC--CHHHHHHHHHhccCC
Confidence 4569999999999999 67777788887753 699999999998754
No 12
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=73.30 E-value=6.1 Score=35.25 Aligned_cols=104 Identities=19% Similarity=0.167 Sum_probs=54.2
Q ss_pred cEEEeccchhhhcCC--CCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEE-ecCC
Q psy10457 116 PVVIDGSNVAMSHGN--KELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILV-YTPS 192 (508)
Q Consensus 116 pIVIDGSNVAmshG~--~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv-~TPS 192 (508)
.|+|||.|+-++.+. +..++...| ++++...| + + ....|+ ... ++ ...-+.+...|...|+-+ ..|-
T Consensus 13 avfiD~~Nl~~~~~~~~~~~~d~~~l---~~~~~~~g-~-l--~~~~~Y-~~~-~~-~~~~~~~~~~L~~~g~~v~~~p~ 82 (165)
T 2qip_A 13 AILVDVQNVYYTCREAYRSNFDYNQF---WYVATQEK-E-V--VSAKAY-AIA-SN-DPKQRQFHHILRGVGFEVMLKPY 82 (165)
T ss_dssp EEEEEHHHHHHHHHHHHSSCBCHHHH---HHHHTTTE-E-E--EEEEEE-ECC-CC-CHHHHHHHHHHHHHTCEEEECCC
T ss_pred EEEEEHHHHHHHHHHHcCCCCCHHHH---HHHHhcCC-E-E--EEEEEE-Ecc-CC-chhHHHHHHHHHHCCcEEEEEee
Confidence 699999999875431 234666555 45554444 2 2 223333 110 01 112345678888889744 3475
Q ss_pred ccc-CCCcccccchHHH---HHHHHhCCc-EEEeCCcchhhhhc
Q psy10457 193 RLI-GGKRLVCYDDRFI---LRLAADTDG-IVVSNDNYRDLCLE 231 (508)
Q Consensus 193 r~v-~Gkr~~syDDryI---LklA~e~dG-vIVSNDnYRD~~~E 231 (508)
... .|.....-|=..+ +++|...|. ||||.|- |+..-
T Consensus 83 ~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~--DF~pl 124 (165)
T 2qip_A 83 IQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDG--DFSLL 124 (165)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCG--GGHHH
T ss_pred eeccCCccCCCccHHHHHHHHHhhccCCEEEEEECCh--hHHHH
Confidence 433 2222112232232 344555555 6899997 66553
No 13
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=72.82 E-value=7.6 Score=38.95 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=53.7
Q ss_pred CcEEEeccchhhh--cCCC-----------C--ccchHHHHHHHHHHHHcCCceEEEEe---cccccccC------CCCC
Q psy10457 115 RPVVIDGSNVAMS--HGNK-----------E--LFSCIGIKICVDWFRARGHKEITVFV---PKWRKESC------RPDN 170 (508)
Q Consensus 115 RpIVIDGSNVAms--hG~~-----------k--~FS~rGI~iAV~yF~~RGh~~VvVFV---P~~Rk~~~------r~d~ 170 (508)
+.|+|||++..+. ++.. + .-.+.|+..-+..+.+.|+++|+||+ |.+|.+.- |...
T Consensus 19 ~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~~~ 98 (346)
T 2izo_A 19 KRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEA 98 (346)
T ss_dssp EEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC--------------------
T ss_pred CEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcchhhhHHHHHHHHHHHh
Confidence 5799999998763 1110 1 11345554444445677999999998 44543310 1100
Q ss_pred C--C------------------------Ch-HHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhC-CcEEEeC
Q psy10457 171 L--I------------------------KN-QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADT-DGIVVSN 222 (508)
Q Consensus 171 ~--i------------------------~d-~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~-dGvIVSN 222 (508)
+ . .- ..+.+.|...|+-+++-.+ .+|-.|..+|.+- --.|||+
T Consensus 99 ~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~---------EADa~ia~La~~g~~~~I~S~ 169 (346)
T 2izo_A 99 ERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPS---------EGEAEAAYLNKLGLSWAAASQ 169 (346)
T ss_dssp --------------------------CHHHHHHHHHHHHHHTCCEEECSS---------CHHHHHHHHHHTTSSSEEECS
T ss_pred HHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCC---------cHHHHHHHHHhCCCeEEEECC
Confidence 0 0 00 1123344566776665332 5888899999852 3468999
Q ss_pred Cc
Q psy10457 223 DN 224 (508)
Q Consensus 223 Dn 224 (508)
|.
T Consensus 170 D~ 171 (346)
T 2izo_A 170 DY 171 (346)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 14
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=71.85 E-value=2.5 Score=33.25 Aligned_cols=23 Identities=35% Similarity=0.772 Sum_probs=19.4
Q ss_pred CCCCCCC---CcccCCCcccccCCCC
Q psy10457 281 GAPCPYG---RKCTYGSKCKFNHPER 303 (508)
Q Consensus 281 ~~~cpy~---~kctyg~kck~~hp~r 303 (508)
..+|++- ..|.||.+|+|.|...
T Consensus 12 t~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 12 TELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp SCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred chhCHHhhhCCCcCCCCCccCCCCCh
Confidence 6789943 5899999999999875
No 15
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=70.76 E-value=1.1 Score=35.39 Aligned_cols=23 Identities=35% Similarity=0.829 Sum_probs=0.0
Q ss_pred CCCCCC---CCcccCCCcccccCCCC
Q psy10457 281 GAPCPY---GRKCTYGSKCKFNHPER 303 (508)
Q Consensus 281 ~~~cpy---~~kctyg~kck~~hp~r 303 (508)
..+|++ ...|.||.+|+|.|++.
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp --------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCC
Confidence 468984 46899999999999874
No 16
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=70.32 E-value=26 Score=35.53 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=58.9
Q ss_pred CCCcEEEeccchhhhc-----CCCCccch---HH-HHHHHHHHHHc----CCc-eEEEEe----cccccccCCCCCC---
Q psy10457 113 KLRPVVIDGSNVAMSH-----GNKELFSC---IG-IKICVDWFRAR----GHK-EITVFV----PKWRKESCRPDNL--- 171 (508)
Q Consensus 113 ~lRpIVIDGSNVAmsh-----G~~k~FS~---rG-I~iAV~yF~~R----Gh~-~VvVFV----P~~Rk~~~r~d~~--- 171 (508)
+.+.++|||+++|+.. ..+..+.. +| +...+..+.+. +.+ .++||+ +.||++.- ++-+
T Consensus 12 ~~~llLIDgssl~~ra~~~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~ely-p~YKanR 90 (305)
T 3h7i_A 12 KEGICLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFA-YYYKKNR 90 (305)
T ss_dssp SCCEEEEEHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHS-TTTTHHH
T ss_pred CCCEEEEeccHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhC-HHhccCC
Confidence 4468999999999862 22222332 34 44454444333 333 355566 35776532 1111
Q ss_pred -------CChH--------HHHHH-HHHCCcEEecCCcccCCCcccccchHHHHHHHHh-----CCcEEEeCCcchhhhh
Q psy10457 172 -------IKNQ--------EVLSE-LEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD-----TDGIVVSNDNYRDLCL 230 (508)
Q Consensus 172 -------i~d~--------~iL~e-L~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-----~dGvIVSNDnYRD~~~ 230 (508)
...- .++.+ |...|+-++.-.+ -.+|=.|-.+|.+ ...+|||.|+ |+.+
T Consensus 91 ~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G--------~EADDiIgTLA~~a~~~g~~V~IvSgDK--Dl~Q 160 (305)
T 3h7i_A 91 GKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDK--------YEANDHIAVLVKKFSLEGHKILIISSDG--DFTQ 160 (305)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTT--------CCHHHHHHHHHHHHHHTTCCEEEECSSC--CCGG
T ss_pred CCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCC--------ccHHHHHHHHHHHHHHCCCcEEEEeCCC--Cccc
Confidence 1111 34444 4558887776555 4567777666553 3468999995 5444
No 17
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=70.11 E-value=22 Score=35.46 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=56.0
Q ss_pred CcEEEeccchhhhc--------CC-----CC--ccchHHHHHHHHHHHHcCCceEEEEe---cccccccC--CCCCC---
Q psy10457 115 RPVVIDGSNVAMSH--------GN-----KE--LFSCIGIKICVDWFRARGHKEITVFV---PKWRKESC--RPDNL--- 171 (508)
Q Consensus 115 RpIVIDGSNVAmsh--------G~-----~k--~FS~rGI~iAV~yF~~RGh~~VvVFV---P~~Rk~~~--r~d~~--- 171 (508)
+.|+|||++..+.. |. .+ +-.+.|+...+..+.+.|...|+||+ |.++.+.- |....
T Consensus 22 ~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~~ 101 (340)
T 1b43_A 22 KKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEA 101 (340)
T ss_dssp CEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHH
T ss_pred CEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHhCCCEEEEEecCCCchhhhhhHHHHHHHHHHH
Confidence 58999999986531 10 01 11334555444456678988899998 33432211 11000
Q ss_pred -------------------------CCh---HHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhC-CcEEEeC
Q psy10457 172 -------------------------IKN---QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADT-DGIVVSN 222 (508)
Q Consensus 172 -------------------------i~d---~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~-dGvIVSN 222 (508)
++. ..+.+.|...|+-+++-.. .+|-.|..+|..- --.|||+
T Consensus 102 ~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~---------EADa~iA~La~~g~~~~i~S~ 172 (340)
T 1b43_A 102 EEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPS---------EGEAQAAYMAAKGSVYASASQ 172 (340)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSS---------CHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcCh---------hHHHHHHHHHHcCCEEEEEcc
Confidence 000 1122344556765555222 6899999999863 3468999
Q ss_pred Cc
Q psy10457 223 DN 224 (508)
Q Consensus 223 Dn 224 (508)
|.
T Consensus 173 D~ 174 (340)
T 1b43_A 173 DY 174 (340)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 18
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=66.69 E-value=3.3 Score=37.58 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=29.2
Q ss_pred cchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEe
Q psy10457 203 YDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFV 249 (508)
Q Consensus 203 yDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFv 249 (508)
.-|..++.+|.+.+|.|||||.- +++..+..=|..-|.
T Consensus 93 ~vD~~l~~lA~~~~a~lvTnD~~---------l~kvA~~~GI~V~~l 130 (142)
T 3i8o_A 93 EIDAMIRKVAKETNSILLTSDWI---------QYNLAKAQGIEAYFL 130 (142)
T ss_dssp SHHHHHHHHHHHTTCEEEESCHH---------HHHHHHHTTCCEEEC
T ss_pred cHHHHHHHHHHHhCCEEEcCCHH---------HHHHHHHcCCEEEEe
Confidence 56999999999999999999975 444555555655553
No 19
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=65.83 E-value=1.7 Score=36.73 Aligned_cols=23 Identities=30% Similarity=0.764 Sum_probs=18.6
Q ss_pred CCCCCC---CCcccCCCcccccCCCC
Q psy10457 281 GAPCPY---GRKCTYGSKCKFNHPER 303 (508)
Q Consensus 281 ~~~cpy---~~kctyg~kck~~hp~r 303 (508)
..+|+| ...|.||.+|+|.|+..
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 456885 47899999999999853
No 20
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=65.83 E-value=14 Score=36.81 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=29.5
Q ss_pred CcEEEeccchhhh--cCC-----------CCc--cchHHHHHHHHHHHHcCCceEEEEe---cccc
Q psy10457 115 RPVVIDGSNVAMS--HGN-----------KEL--FSCIGIKICVDWFRARGHKEITVFV---PKWR 162 (508)
Q Consensus 115 RpIVIDGSNVAms--hG~-----------~k~--FS~rGI~iAV~yF~~RGh~~VvVFV---P~~R 162 (508)
+.|+|||++..+. ++. .+. --+.|+..-+..+.+.|.++|+||+ |.+|
T Consensus 22 ~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~vFDg~~~~~R 87 (336)
T 1rxw_A 22 KKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFK 87 (336)
T ss_dssp CEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTCEEEEEECCSCCGGG
T ss_pred CEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCCCEEEEEEcCCCCccc
Confidence 5899999998653 110 011 1244554444456777878899998 4454
No 21
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=65.61 E-value=4.7 Score=38.49 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=33.8
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCCCC-------ChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGPNP-------SHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~~~-------~~n~~l~Elik 89 (508)
..|++.|...||++++|..||.+.|-|- ..|.||.||.+
T Consensus 170 ~~~v~~~~~mg~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (215)
T 1tte_A 170 HDLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELLK 215 (215)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcccchhhhhHHHHHHHHhC
Confidence 4699999999999999999999998776 56788888853
No 22
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=64.22 E-value=9.5 Score=33.47 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=28.6
Q ss_pred HHHHHhhCCCHHHHHHHH-------------------HHhCCCCChHHHHHHHHhcCC
Q psy10457 54 VDFALKLGYTEDLVQTAL-------------------NKLGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l-------------------~klg~~~~~n~~l~Eliklg~ 92 (508)
-+||++|||++.+|..+= ++-|.++..+.|+.-|.+++-
T Consensus 21 k~LAR~LGlse~dId~Ie~~~p~dl~eq~~~mL~~W~~r~G~~ATv~~L~~AL~~i~~ 78 (122)
T 3ezq_B 21 RRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQM 78 (122)
T ss_dssp HHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHCCC
Confidence 479999999987776542 344777777777777777664
No 23
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=63.88 E-value=6.1 Score=32.55 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=28.9
Q ss_pred HHHHHhhCCCHHHHHHHHHH-------------------hCCCCChHHHHHHHHhcC
Q psy10457 54 VDFALKLGYTEDLVQTALNK-------------------LGPNPSHNELLAELIKLG 91 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~k-------------------lg~~~~~n~~l~Eliklg 91 (508)
-+||++|||++.+|..+=.. -|.++..+.|+.-|.+++
T Consensus 29 k~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~~~ 85 (99)
T 1fad_A 29 KRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNASVAGLVKALRTCR 85 (99)
T ss_dssp HHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHCC
Confidence 57999999999888765433 266777787877777766
No 24
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.43 E-value=17 Score=27.62 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=35.1
Q ss_pred CCcchhhHHHHHHhhCCCHHH-HHHHHHHhCCCCChHHHHHHHHhcCC
Q psy10457 46 YDPGYSARVDFALKLGYTEDL-VQTALNKLGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 46 ~~~~~~~~~~f~~klgy~~~~-v~~~l~klg~~~~~n~~l~Eliklg~ 92 (508)
...+|..+|+-.+.+||+.++ +..||.+-+- +++.-+.-|...+.
T Consensus 5 p~~~~~~~l~~L~~MGF~d~~~n~~AL~~~~G--dv~~Ave~L~~~~~ 50 (54)
T 2dah_A 5 SSGHFQVQLEQLRSMGFLNREANLQALIATGG--DVDAAVEKLRQSSG 50 (54)
T ss_dssp CCCSSHHHHHHHHHHTCCCHHHHHHHHHHHTS--CHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHHHHHcCCCcHHHHHHHHHHcCC--CHHHHHHHHHhCCC
Confidence 345789999999999997765 6999998863 57777777776553
No 25
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=63.15 E-value=3.5 Score=35.93 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.8
Q ss_pred cchHHHHHHHHhCCcEEEeCCcchhh
Q psy10457 203 YDDRFILRLAADTDGIVVSNDNYRDL 228 (508)
Q Consensus 203 yDDryILklA~e~dGvIVSNDnYRD~ 228 (508)
+ |..|+.+|.+.+.+||||| +++
T Consensus 99 ~-D~~Ila~A~~~~~~LvT~D--~~l 121 (147)
T 1o4w_A 99 G-DPSLIEAAEKYGCILITND--KEL 121 (147)
T ss_dssp S-HHHHHHHHHHHTCEEECCC--HHH
T ss_pred c-hHHHHHHHHHhCCEEEECC--HHH
Confidence 6 9999999999999999999 553
No 26
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=60.66 E-value=10 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=25.4
Q ss_pred cchhhHHHHHHhhCCCHHHHHHHHHHhCCC
Q psy10457 48 PGYSARVDFALKLGYTEDLVQTALNKLGPN 77 (508)
Q Consensus 48 ~~~~~~~~f~~klgy~~~~v~~~l~klg~~ 77 (508)
+++..+++-..-+||+++++..+|..-+-+
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n 31 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGD 31 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 467788999999999999999999987643
No 27
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=58.38 E-value=11 Score=30.78 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.5
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhCCCC
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLGPNP 78 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg~~~ 78 (508)
...|++|.++-|-|+++|+.+|.+-|..+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 67999999999999999999999988654
No 28
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=57.85 E-value=12 Score=35.26 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=30.6
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHh-CCCCChHHHHHHHHh
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKL-GPNPSHNELLAELIK 89 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~kl-g~~~~~n~~l~Elik 89 (508)
.-++-..-|||++.++..|+.++ .++.+..+++.+-+|
T Consensus 162 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lir~ALk 200 (203)
T 1cuk_A 162 EAVARLVALGYKPQEASRMVSKIARPDASSETLIREALR 200 (203)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 45666688999999999999998 556678888877665
No 29
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=61.60 E-value=2.3 Score=35.38 Aligned_cols=21 Identities=33% Similarity=0.865 Sum_probs=10.1
Q ss_pred CCCCCCcccCCCcccccCCCCC
Q psy10457 283 PCPYGRKCTYGSKCKFNHPERG 304 (508)
Q Consensus 283 ~cpy~~kctyg~kck~~hp~r~ 304 (508)
.|=||..||- ..|.|+||++-
T Consensus 54 ~Crf~~~C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 54 DCRFGVNCKN-IYCLFRHPPGR 74 (80)
Confidence 3444444444 34555555543
No 30
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=54.50 E-value=13 Score=32.51 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=27.7
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHh-------------------C-CCCChHHHHHHHHhcC
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKL-------------------G-PNPSHNELLAELIKLG 91 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~kl-------------------g-~~~~~n~~l~Eliklg 91 (508)
.=-+|++|||.|+.+|..+-..- | .+|..+.|+.-|-+++
T Consensus 27 ~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~ 86 (112)
T 1ich_A 27 RWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMD 86 (112)
T ss_dssp THHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhc
Confidence 34689999999999988776444 2 5555666666665554
No 31
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=54.34 E-value=55 Score=33.32 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCcEEEeccchhhhc--------CC------C-CccchHHHHHHHHHHHHcCCceEEEEe---cccccccC------CC-
Q psy10457 114 LRPVVIDGSNVAMSH--------GN------K-ELFSCIGIKICVDWFRARGHKEITVFV---PKWRKESC------RP- 168 (508)
Q Consensus 114 lRpIVIDGSNVAmsh--------G~------~-k~FS~rGI~iAV~yF~~RGh~~VvVFV---P~~Rk~~~------r~- 168 (508)
-+.|.|||++..+.. |. + .+--+.|+..-+-.+...|.+++.||+ |.+|.+.- |.
T Consensus 35 gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~ 114 (363)
T 3ory_A 35 GKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEE 114 (363)
T ss_dssp TCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECSSCGGGCHHHHHHHHHHHHH
T ss_pred CCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHcCCCcEEEEcCCCccchHHHHHHHHHhhhh
Confidence 468999999987631 10 0 111334543333334567999999998 44543210 00
Q ss_pred -----------------------CCCCC---hHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhC-CcEEEe
Q psy10457 169 -----------------------DNLIK---NQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADT-DGIVVS 221 (508)
Q Consensus 169 -----------------------d~~i~---d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~-dGvIVS 221 (508)
...++ -..+.+.|...|+=+++-.+ ++|-.|.++|..- --.|||
T Consensus 115 ~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apg---------EADaqiA~La~~g~~~~I~S 185 (363)
T 3ory_A 115 AAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPA---------EGEAQAAYIVKKGDAYASAS 185 (363)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSS---------CHHHHHHHHHHTTSCSEEEC
T ss_pred chHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCc---------cHHHHHHHHHHCCCeEEEEC
Confidence 00111 12223344556766655332 5777888888652 346889
Q ss_pred CCc
Q psy10457 222 NDN 224 (508)
Q Consensus 222 NDn 224 (508)
+|.
T Consensus 186 ~D~ 188 (363)
T 3ory_A 186 QDY 188 (363)
T ss_dssp SSS
T ss_pred CCc
Confidence 885
No 32
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=59.17 E-value=2.7 Score=34.95 Aligned_cols=21 Identities=38% Similarity=0.773 Sum_probs=17.7
Q ss_pred CCCCCCCCcccCCCcccccCCC
Q psy10457 281 GAPCPYGRKCTYGSKCKFNHPE 302 (508)
Q Consensus 281 ~~~cpy~~kctyg~kck~~hp~ 302 (508)
..+|.||..||. .+|.|+||+
T Consensus 31 ~~~Cr~g~~C~~-~~C~f~HP~ 51 (80)
T 2lhn_A 31 HIMCREGANCTR-IDCLFGHPI 51 (80)
Confidence 347999999998 689999993
No 33
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=54.03 E-value=19 Score=36.38 Aligned_cols=37 Identities=11% Similarity=-0.056 Sum_probs=25.5
Q ss_pred HHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCCcE-EEeCCc
Q psy10457 179 SELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGI-VVSNDN 224 (508)
Q Consensus 179 ~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~dGv-IVSNDn 224 (508)
+.|...|+-+++-.+ .+|-.|..+|..-..+ |||.|.
T Consensus 142 ~lL~~~gip~i~ap~---------EADd~ia~La~~g~v~~i~s~D~ 179 (341)
T 3q8k_A 142 HLLSLMGIPYLDAPS---------EAEASCAALVKAGKVYAAATEDM 179 (341)
T ss_dssp HHHHHHTCCEEECSS---------CHHHHHHHHHHTTSSSEEECSCT
T ss_pred HHHHHcCCCEEECCc---------cHHHHHHHHHhcCCeEEEEcCCc
Confidence 344666776665332 6899999999975444 689884
No 34
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=53.77 E-value=19 Score=30.43 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=31.3
Q ss_pred HHHHHhhCCCHHHHHHHH-------------------HHhCCCCChHHHHHHHHhcCCC
Q psy10457 54 VDFALKLGYTEDLVQTAL-------------------NKLGPNPSHNELLAELIKLGAQ 93 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l-------------------~klg~~~~~n~~l~Eliklg~~ 93 (508)
.+||++|||++.+|..+= ++-|.++..+.|+.-|.+++-.
T Consensus 33 k~LAr~Lg~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r~ 91 (111)
T 2yqf_A 33 AELARELQFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRG 91 (111)
T ss_dssp HHHHHHTTCCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCcH
Confidence 579999999998876542 3347888899999888888754
No 35
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=51.87 E-value=6.3 Score=33.25 Aligned_cols=21 Identities=19% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCCCCCCC--cccCCCcccccCC
Q psy10457 281 GAPCPYGR--KCTYGSKCKFNHP 301 (508)
Q Consensus 281 ~~~cpy~~--kctyg~kck~~hp 301 (508)
..+|.|.. .|++|.+|+|.|+
T Consensus 13 ~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 13 RELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccCcccccCcCCCCCCCCCCCC
Confidence 55687765 6888888888887
No 36
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=50.48 E-value=19 Score=34.37 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=31.2
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHh---CCCCChHHHHHHHHh
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKL---GPNPSHNELLAELIK 89 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~kl---g~~~~~n~~l~Elik 89 (508)
.-++-..-|||++.++..|+.++ .++.+..++|.+-+|
T Consensus 166 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk 206 (212)
T 2ztd_A 166 PVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALS 206 (212)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 45666788999999999999988 456788888888766
No 37
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=49.44 E-value=20 Score=30.69 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHh-----CCCCChHHHHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCcEEEeccchhhhcCCCCccc
Q psy10457 61 GYTEDLVQTALNKL-----GPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFS 135 (508)
Q Consensus 61 gy~~~~v~~~l~kl-----g~~~~~n~~l~Eliklg~~~~~~~~~~~~~~~~~~~~~~lRpIVIDGSNVAmshG~~k~FS 135 (508)
-||+++.-..++++ +.+...+++|..+.+++..+ +||++=||-..+.--|
T Consensus 9 DyTe~Efi~lv~~I~~~~~~~E~e~d~ll~~fe~iteHP-------------------------~gSDLIfyP~~~~e~S 63 (94)
T 3u43_A 9 DYTEAEFLEFVKKICRAEGATEEDDNKLVREFERLTEHP-------------------------DGSDLIYYPRDDREDS 63 (94)
T ss_dssp GSBHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHCCT-------------------------TTTHHHHSCCTTSCSS
T ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC-------------------------CccCeeeeCCCCCCCC
Confidence 38888888888777 66677899999999987653 3566666655445578
Q ss_pred hHHHHHHHHHHHHc-CC
Q psy10457 136 CIGIKICVDWFRAR-GH 151 (508)
Q Consensus 136 ~rGI~iAV~yF~~R-Gh 151 (508)
..||...|.-|+.. |-
T Consensus 64 PEgIv~~IKeWRa~nG~ 80 (94)
T 3u43_A 64 PEGIVKEIKEWRAANGK 80 (94)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999988888644 43
No 38
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=49.40 E-value=34 Score=25.70 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=34.1
Q ss_pred CcchhhHHHHHHhhCC-CHHHHHHHHHHhCCCCChHHHHHHHHhc
Q psy10457 47 DPGYSARVDFALKLGY-TEDLVQTALNKLGPNPSHNELLAELIKL 90 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy-~~~~v~~~l~klg~~~~~n~~l~Elikl 90 (508)
+..|..+|+-..-+|| +++.+..||.+-+- +.+.-+.-|...
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~g--nve~Ave~L~~~ 50 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGG--DINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTS--CHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCC--CHHHHHHHHHHc
Confidence 4569999999999999 99999999999875 466666666543
No 39
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=49.18 E-value=25 Score=26.39 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=31.0
Q ss_pred CcchhhHHHHHHhhCC-CHHHHHHHHHHhCCCCChHHHHHHH
Q psy10457 47 DPGYSARVDFALKLGY-TEDLVQTALNKLGPNPSHNELLAEL 87 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy-~~~~v~~~l~klg~~~~~n~~l~El 87 (508)
..+|..+|+-...+|| +++.+..||.+-+- +.+.-+.-|
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~g--n~e~A~e~L 48 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIATGG--DINAAIERL 48 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCC--CHHHHHHHH
Confidence 5678999999999999 99999999999875 355444433
No 40
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=47.46 E-value=6.5 Score=35.14 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=28.5
Q ss_pred ccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeE
Q psy10457 202 CYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYS 247 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YT 247 (508)
+..|..+|.+|.+.++.|||||.- ++++.+..=|.+.
T Consensus 83 s~~D~~lIaLA~~l~~~lvT~D~~---------l~~vA~~~Gv~v~ 119 (165)
T 2lcq_A 83 SKADIEVLALAYELKGEIFSDDYN---------VQNIASLLGLRFR 119 (165)
T ss_dssp CHHHHHHHHHHHHHTCCEECCCHH---------HHHHHHHTTCCEE
T ss_pred CHHHHHHHHhHHHhCCeEEcCcHH---------HHHHHHHCCCeEE
Confidence 568999999999999999999953 5555555545444
No 41
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=45.36 E-value=19 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.2
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHH
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNK 73 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~k 73 (508)
...|++|..+-|-|+++|+.+|.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 668999999999999999999975
No 42
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=44.91 E-value=24 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=27.5
Q ss_pred HHHHHhhCCCHHHHHHHH-------------------HHhCCCCChHHHHHHHHhcC
Q psy10457 54 VDFALKLGYTEDLVQTAL-------------------NKLGPNPSHNELLAELIKLG 91 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l-------------------~klg~~~~~n~~l~Eliklg 91 (508)
-+|++|||.|+.+|..+- ++-|.++..+.|+.-|-+++
T Consensus 16 K~~~R~LGlse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~~ 72 (86)
T 3oq9_A 16 KKFARENNIKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKKAE 72 (86)
T ss_dssp HHHHHTTTSCHHHHHHHHHTCTTCCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHhHHHHHHHhCCCChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHcc
Confidence 479999999998887654 34566666677776666654
No 43
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=44.18 E-value=31 Score=31.33 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILklA 212 (508)
+..+...+++|+.++||+.|.++....... .....-..+...|.+.|+ .+.+...+.+.. +.++- .+-++-
T Consensus 110 ~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~----~~~~R~~g~~~~l~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~~l 182 (289)
T 1dbq_A 110 AFEGGYMAGRYLIERGHREIGVIPGPLERN----TGAGRLAGFMKAMEEAMI-KVPESWIVQGDF--EPESGYRAMQQIL 182 (289)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCC----------CHHHHHHHHHHHHTTC-CCCGGGBCCCCS--SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEecCCccc----cHHHHHHHHHHHHHHCCC-CCChHHeEeCCC--CHHHHHHHHHHHH
Confidence 356788999999999999865553321100 011112345566777663 222221122211 11221 222222
Q ss_pred ---HhCCcEEEeCCcch
Q psy10457 213 ---ADTDGIVVSNDNYR 226 (508)
Q Consensus 213 ---~e~dGvIVSNDnYR 226 (508)
.+.+|+|+.||.+-
T Consensus 183 ~~~~~~~ai~~~~d~~a 199 (289)
T 1dbq_A 183 SQPHRPTAVFCGGDIMA 199 (289)
T ss_dssp TSSSCCSEEEESCHHHH
T ss_pred hCCCCCCEEEECCcHHH
Confidence 24589999999763
No 44
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=43.23 E-value=42 Score=28.35 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHh------CCCCChHHHHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCcEEEeccchhhhcCCCCcc
Q psy10457 61 GYTEDLVQTALNKL------GPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELF 134 (508)
Q Consensus 61 gy~~~~v~~~l~kl------g~~~~~n~~l~Eliklg~~~~~~~~~~~~~~~~~~~~~~lRpIVIDGSNVAmshG~~k~F 134 (508)
-||+++....|+++ +.+...++++.+.++++..+ |||++-|+-..+.--
T Consensus 9 DYTE~EFl~fv~~i~~~~~~~~e~~~d~lv~hF~~iteHP-------------------------~gsDLIfYP~~~~ed 63 (87)
T 1unk_A 9 DYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHP-------------------------DGTDLIYYPSDNRDD 63 (87)
T ss_dssp GSCHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCT-------------------------TTTHHHHSCCSSCCC
T ss_pred hcCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhcCCC-------------------------CCCCeeeeCCCCCCC
Confidence 38888888888776 67777799999999998654 477777776555556
Q ss_pred chHHHHHHHHHHHHc
Q psy10457 135 SCIGIKICVDWFRAR 149 (508)
Q Consensus 135 S~rGI~iAV~yF~~R 149 (508)
|-.||...|.-|+..
T Consensus 64 sPEgIv~~iKeWRa~ 78 (87)
T 1unk_A 64 SPEGIVKEIKEWRAA 78 (87)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 889999888888654
No 45
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=42.90 E-value=5.5 Score=28.77 Aligned_cols=27 Identities=37% Similarity=0.919 Sum_probs=21.6
Q ss_pred CCCCCCCCcccCCCcccccCCCCCCCCc
Q psy10457 281 GAPCPYGRKCTYGSKCKFNHPERGPWPH 308 (508)
Q Consensus 281 ~~~cpy~~kctyg~kck~~hp~r~~~~~ 308 (508)
-|||||...|--| .|-|.--|.|++.+
T Consensus 8 gQPCpyne~CCs~-sct~k~NeNGntV~ 34 (37)
T 1axh_A 8 GQPCPYNENCCSQ-SCTFKENENGNTVK 34 (37)
T ss_dssp TSBCSSGGGBSSS-CEEEEECSSSCEEE
T ss_pred CCcCCCccccccc-ccceeeccCCcEee
Confidence 6899999998877 78888777777643
No 46
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=41.47 E-value=33 Score=28.52 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=27.9
Q ss_pred HHHHHhhCCCHHHHHH----------HHHHh----CCCCChHHHHHHHHhcCC
Q psy10457 54 VDFALKLGYTEDLVQT----------ALNKL----GPNPSHNELLAELIKLGA 92 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~----------~l~kl----g~~~~~n~~l~Eliklg~ 92 (508)
-.+|++|||+..+|.. +|..- |.++..+.|++=|-++|-
T Consensus 22 ~~LA~~Lg~~~~~I~~i~~~~~~~~~lL~~W~~r~g~~ATv~~L~~aL~~i~R 74 (91)
T 2ib1_A 22 QELAGHLGYQAEAVETMACDQMPAYTLLRNWAAQEGNRATLRVLEDALAAIGR 74 (91)
T ss_dssp HHHHHHHTCCHHHHHHHTTSSCHHHHHHHHTTSSSSSTTSTTHHHHHHHTTTC
T ss_pred HHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHhccCCCCcHHHHHHHHHHcCH
Confidence 4689999999988854 45433 556777777777777663
No 47
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.82 E-value=60 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.3
Q ss_pred CcchhhHHHHHHhhCCC-HHHHHHHHHHhCCCCChHHHHHHHHh
Q psy10457 47 DPGYSARVDFALKLGYT-EDLVQTALNKLGPNPSHNELLAELIK 89 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy~-~~~v~~~l~klg~~~~~n~~l~Elik 89 (508)
...|+.+|+-.+.+||+ ++.+..||..-+- +.+.-+.-|+.
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t~G--nve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVATDG--DIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHTTS--CHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHhCC--CHHHHHHHHHh
Confidence 45689999999999995 7888999998753 56666666664
No 48
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.73 E-value=24 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=27.1
Q ss_pred CcchhhHHHHHHhhCCCHHHHHHHHHHhCCC
Q psy10457 47 DPGYSARVDFALKLGYTEDLVQTALNKLGPN 77 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy~~~~v~~~l~klg~~ 77 (508)
++++..++.-..-+||+++++..+|.+-+-+
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n 35 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRASYNN 35 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHTTTSC
T ss_pred CccCHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 4568889999999999999999999998754
No 49
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=40.64 E-value=27 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHhhCCCHHHHHHHHH-------------------HhCCCCChHHHHHHHHhcCC
Q psy10457 54 VDFALKLGYTEDLVQTALN-------------------KLGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~-------------------klg~~~~~n~~l~Eliklg~ 92 (508)
-+|+++||+++.+|..+-. +-|.++..+.|+.=|.+++-
T Consensus 39 k~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l 96 (114)
T 2of5_A 39 EPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEV 96 (114)
T ss_dssp HHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCC
Confidence 5799999999988866432 22667777777777777664
No 50
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=39.91 E-value=30 Score=29.96 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHHHhhCCCHHHHHHHHH-------------------HhCCCCChHHHHHHHHhcCC
Q psy10457 54 VDFALKLGYTEDLVQTALN-------------------KLGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~-------------------klg~~~~~n~~l~Eliklg~ 92 (508)
-+||++||+++.+|..+-. +-|.++..+.|+.=|.+++-
T Consensus 39 k~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 39 EPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEV 96 (115)
T ss_dssp HHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCC
Confidence 5799999999988866432 22666777777777776664
No 51
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=39.75 E-value=13 Score=31.46 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=23.6
Q ss_pred cccchHHHHHHHHhCCcEEEeCCc--chhh
Q psy10457 201 VCYDDRFILRLAADTDGIVVSNDN--YRDL 228 (508)
Q Consensus 201 ~syDDryILklA~e~dGvIVSNDn--YRD~ 228 (508)
....|.+|+..|...|+.|||+|. |+..
T Consensus 94 ~~~~D~lIaA~A~~~~~~lvT~D~kdf~~i 123 (149)
T 1v96_A 94 LDMEDIITATTAIYTNSLLVTDDPKRYEPI 123 (149)
T ss_dssp CCHHHHHHHHHHHHHTCEEEESCHHHHGGG
T ss_pred CCHhHHHHHHHHHHcCCEEEECCHHHHhhh
Confidence 367899999999999999999993 6543
No 52
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=39.57 E-value=83 Score=31.82 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCcEEEeccchhhhc--C------CCCcc-chHH-HHHHHHHHHHcCCceEEEEecc---ccccc---------------
Q psy10457 114 LRPVVIDGSNVAMSH--G------NKELF-SCIG-IKICVDWFRARGHKEITVFVPK---WRKES--------------- 165 (508)
Q Consensus 114 lRpIVIDGSNVAmsh--G------~~k~F-S~rG-I~iAV~yF~~RGh~~VvVFVP~---~Rk~~--------------- 165 (508)
-+.|.|||++-.+.. . .+... ...| +...++.|.+.|.+.|.||+=. ..+..
T Consensus 24 Gk~vaIDas~wL~~~~~~~~~~l~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~ 103 (352)
T 3qe9_Y 24 GQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKG 103 (352)
T ss_dssp TSEEEEETHHHHHHHHHHTHHHHHTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecHHHHHHhhhccchhhcCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999986531 1 11222 2233 3345667888999999999821 11100
Q ss_pred ------CC---------CCCCCCh---HHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhCC-cEEEeCCc
Q psy10457 166 ------CR---------PDNLIKN---QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTD-GIVVSNDN 224 (508)
Q Consensus 166 ------~r---------~d~~i~d---~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~d-GvIVSNDn 224 (508)
++ ....++. ..+.+.|...|+=+++-. ..+|-.|..+|..-. -.|||+|.
T Consensus 104 ~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap---------~EADaqiA~La~~g~~~~I~S~D~ 172 (352)
T 3qe9_Y 104 KQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAP---------YEADAQLAYLNKAGIVQAIITEDS 172 (352)
T ss_dssp HHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECS---------SCHHHHHHHHHHTTSCSEEECSCG
T ss_pred HHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECC---------cchHHHHHHHHHCCCeEEEEeCCc
Confidence 00 0001111 233455677787766632 368999999998532 26899885
No 53
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=38.21 E-value=18 Score=31.90 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 202 CYDDRFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
..-|.+|...|...|+.+||+| +|+..
T Consensus 112 ~~~D~lIaA~A~~~~~~LvT~d--~dF~~ 138 (150)
T 3dbo_B 112 RINDLWIAAVAASRALPVITQD--DDFAA 138 (150)
T ss_dssp BHHHHHHHHHHHHTTCCEEESS--SSGGG
T ss_pred CCchHHHHHHHHHCCCEEEECC--hhhhh
Confidence 3679999999999999999999 67644
No 54
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=38.19 E-value=22 Score=32.62 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccch--HHHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDD--RFILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDD--ryILklA 212 (508)
+..+...+++|+.++||+.|.++........ ....-.-+...|.+.|+ .+.+...+.|.. +.++ ..+.++-
T Consensus 109 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~----~~~R~~Gf~~~l~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~~l 181 (287)
T 3bbl_A 109 GTAGTRQAVEYLIGRGHRRIAILAWPEDSRV----GNDRLQGYLEAMQTAQL-PIETGYILRGEG--TFEVGRAMTLHLL 181 (287)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEECCTTCHH----HHHHHHHHHHHHHHTTC-CCCGGGEEECCS--SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeCCccccc----HHHHHHHHHHHHHHcCC-CCChhhEEeCCC--CHHHHHHHHHHHH
Confidence 4578899999999999998655432210000 00012334566777774 222211111111 1122 2233332
Q ss_pred H-----hCCcEEEeCCcch
Q psy10457 213 A-----DTDGIVVSNDNYR 226 (508)
Q Consensus 213 ~-----e~dGvIVSNDnYR 226 (508)
. +.+|+|+.||.+-
T Consensus 182 ~~~~~~~~~ai~~~~d~~a 200 (287)
T 3bbl_A 182 DLSPERRPTAIMTLNDTMA 200 (287)
T ss_dssp TSCTTTSCSEEEESSHHHH
T ss_pred hhCCCCCCcEEEECCcHHH
Confidence 2 4589999999763
No 55
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=37.04 E-value=30 Score=32.68 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILklA 212 (508)
+..+...+++|+.++||+.|.++........ ....-.-+...|.+.|+ .+.+...+.|.. +.++- .+-++-
T Consensus 164 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~----~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~ll 236 (332)
T 2o20_A 164 YHLAAYQSTKKLIDSGNKKIAYIMGSLKDVE----NTERMVGYQEALLEANI-EFDENLVFEGNY--SYEQGKALAERLL 236 (332)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEECSCTTSHH----HHHHHHHHHHHHHHTTC-CCCGGGEECSCC--SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEeCCccccc----HHHHHHHHHHHHHHcCC-CCChhhEEeCCC--CHHHHHHHHHHHh
Confidence 3468899999999999998654432210000 00012334566777774 222221112211 11221 122211
Q ss_pred -HhCCcEEEeCCcc
Q psy10457 213 -ADTDGIVVSNDNY 225 (508)
Q Consensus 213 -~e~dGvIVSNDnY 225 (508)
.+.+|+|+.||.+
T Consensus 237 ~~~~~ai~~~~d~~ 250 (332)
T 2o20_A 237 ERGATSAVVSHDTV 250 (332)
T ss_dssp HTTCCEEEESCHHH
T ss_pred ccCCCEEEECChHH
Confidence 1679999999975
No 56
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=34.98 E-value=31 Score=31.23 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHH-HHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFI-LRLAA 213 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryI-LklA~ 213 (508)
+..+...+++|+.++||+.|.++........ .......+...|.+.|+-.. + .+.+.. +.++-+- |....
T Consensus 106 ~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~----~~~R~~gf~~~l~~~~~~~~-~--~~~~~~--~~~~~~~~l~~~~ 176 (277)
T 3e61_A 106 HFKGGQLQAEVVRKGKGKNVLIVHENLLIDA----FHQRVQGIKYILDQQRIDYK-M--LEATLL--DNDKKFIDLIKEL 176 (277)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEESCTTSHH----HHHHHHHHHHHHHC---CEE-E--EEGGGG--GSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEeCCCCCcc----HHHHHHHHHHHHHHcCCCcc-c--eecCCC--CHHHHHHHhhcCC
Confidence 3467889999999999998765543211000 00012334556666664221 1 111111 1222222 33345
Q ss_pred hCCcEEEeCCcch
Q psy10457 214 DTDGIVVSNDNYR 226 (508)
Q Consensus 214 e~dGvIVSNDnYR 226 (508)
+.+|+|+.||.+-
T Consensus 177 ~~~ai~~~~d~~a 189 (277)
T 3e61_A 177 SIDSIICSNDLLA 189 (277)
T ss_dssp TCCEEEESSHHHH
T ss_pred CCCEEEECCcHHH
Confidence 6799999999874
No 57
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=34.98 E-value=15 Score=31.68 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=23.7
Q ss_pred cccchHHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 201 VCYDDRFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 201 ~syDDryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
.+..|.+|+..|.+.|+.|+|+| +|+..
T Consensus 99 l~~~Dali~A~A~~~g~~l~T~D--~dF~~ 126 (156)
T 1w8i_A 99 FSYTDAISEVVAEELKLKLISYD--SRFSL 126 (156)
T ss_dssp CCHHHHHHHHHHHHHTCEEECSC--TTCSS
T ss_pred CCHhHHHHHHHHHHcCCEEEEeC--cccCc
Confidence 36789999999999999999998 55543
No 58
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.70 E-value=44 Score=28.65 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=25.3
Q ss_pred HHHHHhhCCCHHHHHHHHHHh--------------------CCCCChHHHHHHHHhcC
Q psy10457 54 VDFALKLGYTEDLVQTALNKL--------------------GPNPSHNELLAELIKLG 91 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~kl--------------------g~~~~~n~~l~Eliklg 91 (508)
..||++|||++.+|..+=..- |.++..+.|+.-|.++|
T Consensus 28 k~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~~~~ 85 (118)
T 2of5_H 28 PAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLLVQALEQSD 85 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHcC
Confidence 579999999998886654332 33555566666666555
No 59
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=34.33 E-value=29 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHhhCCCHHHHHHH--------------H----HHhCCCCChHHHHHHHHhcCC
Q psy10457 54 VDFALKLGYTEDLVQTA--------------L----NKLGPNPSHNELLAELIKLGA 92 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~--------------l----~klg~~~~~n~~l~Eliklg~ 92 (508)
-+||++|||++.+|..+ | ++-|.++..+.|+.-|.+++-
T Consensus 33 k~LAr~Lg~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~~~ 89 (110)
T 1wxp_A 33 KILAPYLEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGL 89 (110)
T ss_dssp HHHTTTTTCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHcCc
Confidence 57999999999888553 2 334778888888888888764
No 60
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=34.03 E-value=12 Score=31.95 Aligned_cols=28 Identities=21% Similarity=0.571 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCcccCCCc---ccccCCCCC
Q psy10457 277 QNSTGAPCPYGRKCTYGSK---CKFNHPERG 304 (508)
Q Consensus 277 ~~~~~~~cpy~~kctyg~k---ck~~hp~r~ 304 (508)
..+..+.||||.+|---|. =.|.||.-+
T Consensus 57 ~~~~~p~C~YG~~CYRkNp~H~~ey~Hp~~~ 87 (91)
T 2kuo_A 57 ETDDRPECPYGPSCYRKNPQHKIEYRHNTLP 87 (91)
T ss_dssp SCTTSCBCTTGGGCCCCCHHHHHHSBCCCCC
T ss_pred CCCCCCCCCCchhhhcCCHHHHHhccCCCCC
Confidence 3555888999999977664 457787643
No 61
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=33.90 E-value=33 Score=31.64 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILklA 212 (508)
+..+...|++|+.++||+.|.++........ ....-.-+...|.+.|+-.. .+.+.. +.++- .+-++-
T Consensus 115 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~----~~~R~~Gf~~al~~~g~~~~----~~~~~~--~~~~~~~~~~~~l 184 (295)
T 3hcw_A 115 NILASENLTRHVIEQGVDELIFITEKGNFEV----SKDRIQGFETVASQFNLDYQ----IIETSN--EREVILNYMQNLH 184 (295)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEESSCCHH----HHHHHHHHHHHHHHTTCEEE----EEEECS--CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCccEEEEcCCccchh----HHHHHHHHHHHHHHcCCCee----EEeccC--CHHHHHHHHHHHH
Confidence 4578899999999999998655543211000 00112345567777776322 111100 12221 122222
Q ss_pred H------hCCcEEEeCCcc
Q psy10457 213 A------DTDGIVVSNDNY 225 (508)
Q Consensus 213 ~------e~dGvIVSNDnY 225 (508)
. +.+|+|++||.+
T Consensus 185 ~~~~~~~~~~ai~~~~d~~ 203 (295)
T 3hcw_A 185 TRLKDPNIKQAIISLDAML 203 (295)
T ss_dssp HHHTCTTSCEEEEESSHHH
T ss_pred hhcccCCCCcEEEECChHH
Confidence 1 468999999986
No 62
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=33.72 E-value=35 Score=31.39 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHcCCceEEEEeccc-ccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKW-RKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRL 211 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~-Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILkl 211 (508)
+..+...+++|+.++||+.|.++.... .... ......-+...|.+.|+ .+.+...+.+.. +.++- .+-++
T Consensus 117 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~----~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (289)
T 2fep_A 117 YEQAIYDAVKLLVDKGHTDIAFVSGPMAEPIN----RSKKLQGYKRALEEANL-PFNEQFVAEGDY--TYDSGLEALQHL 189 (289)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEESCTTSHHH----HTTHHHHHHHHHHHTTC-CCCGGGEEECCS--CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeCCcccccc----HHHHHHHHHHHHHHcCC-CCChheEeeCCC--CHHHHHHHHHHH
Confidence 346889999999999999875554321 1000 01122345667777774 222211111110 11221 22222
Q ss_pred HH---hCCcEEEeCCcch
Q psy10457 212 AA---DTDGIVVSNDNYR 226 (508)
Q Consensus 212 A~---e~dGvIVSNDnYR 226 (508)
-. +.+|+|+.||.+-
T Consensus 190 l~~~~~~~ai~~~~d~~A 207 (289)
T 2fep_A 190 MSLDKKPTAILSATDEMA 207 (289)
T ss_dssp TTSSSCCSEEEESSHHHH
T ss_pred HcCCCCCCEEEECCHHHH
Confidence 22 3589999999863
No 63
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=33.36 E-value=31 Score=31.66 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 112 ~~~~g~~a~~~L~~~G~~~I~~i~ 135 (290)
T 2rgy_A 112 HRRGGELAAATLIEHGHRKLAVIS 135 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cHHHHHHHHHHHHHCCCceEEEEe
Confidence 457889999999999999875554
No 64
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.31 E-value=63 Score=25.11 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=28.7
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhCCCCCh-HHHHHHHH
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLGPNPSH-NELLAELI 88 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg~~~~~-n~~l~Eli 88 (508)
..++++-..-+||+.++|.++|..-+.+.+. -.||-|.+
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3477899999999999999999998655332 12555544
No 65
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=32.49 E-value=55 Score=30.11 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHhhCCCHHHHHHHHHH-------------------hCCCCChHHHHHHHHhcC
Q psy10457 54 VDFALKLGYTEDLVQTALNK-------------------LGPNPSHNELLAELIKLG 91 (508)
Q Consensus 54 ~~f~~klgy~~~~v~~~l~k-------------------lg~~~~~n~~l~Eliklg 91 (508)
-+||++|||++.+|..+-.. -|.+|..+.|+.-|.+++
T Consensus 113 k~Lar~Lgl~~~~I~~I~~~~~~d~~eq~~~mL~~W~~r~g~~At~~~L~~AL~~~~ 169 (191)
T 2gf5_A 113 RRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQ 169 (191)
T ss_dssp HHHHHHTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcC
Confidence 57999999999988765543 356666666666666554
No 66
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=32.40 E-value=12 Score=31.91 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=1.5
Q ss_pred CCCCCCCCCCCcccCCCc---ccccCCC
Q psy10457 278 NSTGAPCPYGRKCTYGSK---CKFNHPE 302 (508)
Q Consensus 278 ~~~~~~cpy~~kctyg~k---ck~~hp~ 302 (508)
.+..+.||||.+|---|. =.|.||.
T Consensus 53 ~~~~p~C~YG~~CYRkNp~H~~ey~Hp~ 80 (89)
T 2kqb_A 53 TDDRPECPYGPSCYRKNPQHKIEYRHNT 80 (89)
T ss_dssp CCC-------------------------
T ss_pred CCCCCCCCCchhhhcCCHHHHHhccCCC
Confidence 455888999999966543 4677776
No 67
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=31.85 E-value=29 Score=28.64 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhCCcEEEeCC
Q psy10457 202 CYDDRFILRLAADTDGIVVSND 223 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSND 223 (508)
...|.+|+..|...|+.|||+|
T Consensus 95 ~~~D~lIaA~A~~~~~~lvT~d 116 (132)
T 3tnd_A 95 GPFDQMIAGHARSRGLIIVTNN 116 (132)
T ss_dssp CHHHHHHHHHHHHTTCEEEESC
T ss_pred CchHHHHHHHHHHcCCEEEECC
Confidence 5789999999999999999988
No 68
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=31.82 E-value=55 Score=27.38 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHh-----CCCCChHHHHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCcEEEeccchhhhcCCCCccch
Q psy10457 62 YTEDLVQTALNKL-----GPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFSC 136 (508)
Q Consensus 62 y~~~~v~~~l~kl-----g~~~~~n~~l~Eliklg~~~~~~~~~~~~~~~~~~~~~~lRpIVIDGSNVAmshG~~k~FS~ 136 (508)
||+++.-..++++ +.+...+.+|..+.+++..+ +||++=||-..+.--|.
T Consensus 10 yTe~Efi~lv~~I~~~~~~~e~e~d~ll~~f~~~teHP-------------------------~gSDLIfyP~~~~e~sp 64 (86)
T 1fr2_A 10 YTEAEFLQLVTTICNADTSSEEELVKLVTHFAEMTEHP-------------------------SGSDLIYYPKEGDDDSP 64 (86)
T ss_dssp SBHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHCCT-------------------------TTTHHHHSCCTTCCCSH
T ss_pred cCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcCCC-------------------------CcCceeecCCCCCCCCH
Confidence 7888888888777 34445678888899887653 35666666654455789
Q ss_pred HHHHHHHHHHHHc
Q psy10457 137 IGIKICVDWFRAR 149 (508)
Q Consensus 137 rGI~iAV~yF~~R 149 (508)
.||...|.-|+..
T Consensus 65 E~Iv~~ik~wRa~ 77 (86)
T 1fr2_A 65 SGIVNTVKQWRAA 77 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877644
No 69
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.58 E-value=40 Score=31.72 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHcCCceEEEEeccc-ccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccch--HHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKW-RKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDD--RFILRL 211 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~-Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDD--ryILkl 211 (508)
+..+...+++|+.++||+.|.++.... .... ....-.-+...|.+.|+ .+.+...+.|.. +.++ ..+-++
T Consensus 161 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~----~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~l 233 (332)
T 2hsg_A 161 YEQAAFDAVQSLIDSGHKNIAFVSGTLEEPIN----HAKKVKGYKRALTESGL-PVRDSYIVEGDY--TYDSGIEAVEKL 233 (332)
T ss_dssp HHHHHHHHHHHHHTTTCSCEEEEESCTTSHHH----HTTHHHHHHHHHHTTTC-CCCGGGEEECCS--SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEeCCcccCcc----HHHHHHHHHHHHHHcCC-CCChheEEeCCC--CHHHHHHHHHHH
Confidence 356889999999999999865543321 1000 01112345666777674 222211111110 1122 122222
Q ss_pred HH---hCCcEEEeCCcc
Q psy10457 212 AA---DTDGIVVSNDNY 225 (508)
Q Consensus 212 A~---e~dGvIVSNDnY 225 (508)
-. +.+|+|+.||.+
T Consensus 234 l~~~~~~~ai~~~nd~~ 250 (332)
T 2hsg_A 234 LEEDEKPTAIFVGTDEM 250 (332)
T ss_dssp HHSSSCCSEEEESSHHH
T ss_pred HcCCCCCeEEEECChHH
Confidence 22 358999999986
No 70
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=31.23 E-value=42 Score=31.62 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccch--HHHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDD--RFILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDD--ryILklA 212 (508)
+..+...+++|+.++||+.|.++........ ....-.-+...|.+.|+ .+.+...+.+.. +.++ ..+.++-
T Consensus 165 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~----~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~ll 237 (338)
T 3dbi_A 165 HKQTSFNAVAELINAGHQEIAFLTGSMDSPT----SIERLAGYKDALAQHGI-ALNEKLIANGKW--TPASGAEGVEMLL 237 (338)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCCTTCHH----HHHHHHHHHHHHHHTTC-CCCGGGEECCCS--SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEeCCCCCcc----HHHHHHHHHHHHHHCCC-CCCcceEEeCCC--CHHHHHHHHHHHH
Confidence 4578899999999999998755533211000 00012334566777764 222221112211 1121 1222222
Q ss_pred ---HhCCcEEEeCCcch
Q psy10457 213 ---ADTDGIVVSNDNYR 226 (508)
Q Consensus 213 ---~e~dGvIVSNDnYR 226 (508)
.+-+|+|+.||.+-
T Consensus 238 ~~~~~~~ai~~~nd~~A 254 (338)
T 3dbi_A 238 ERGAKFSALVASNDDMA 254 (338)
T ss_dssp HTTCCCSEEEESSHHHH
T ss_pred cCCCCCeEEEECChHHH
Confidence 23589999999764
No 71
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=30.38 E-value=75 Score=30.99 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=35.4
Q ss_pred CcchhhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHh
Q psy10457 47 DPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIK 89 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Elik 89 (508)
.++|..||+-+...||.++++..||.+.+= +.+.-++.|+.
T Consensus 212 ~~~~~~~v~~l~~mgf~~~~~~~al~~~nW--d~~~A~e~L~~ 252 (253)
T 3e46_A 212 SPEYTKKIENLCAAGFDRNAVIVALSSKSW--DVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCC--CHHHHHHHHhc
Confidence 567899999999999999999999999964 67888877763
No 72
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=30.35 E-value=58 Score=29.82 Aligned_cols=85 Identities=19% Similarity=0.122 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccch--HHHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDD--RFILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDD--ryILklA 212 (508)
+..+...+++|+.++||+.|.++........ ......-+...|.+.|+- +.+...+.+.. ++++ ..+.++-
T Consensus 111 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~----~~~R~~gf~~~l~~~g~~-~~~~~~~~~~~--~~~~~~~~~~~~l 183 (288)
T 3gv0_A 111 NEAYAYEAVERLAQCGRKRIAVIVPPSRFSF----HDHARKGFNRGIRDFGLT-EFPIDAVTIET--PLEKIRDFGQRLM 183 (288)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCCTTSHH----HHHHHHHHHHHHHHTTCE-ECCCCSCCTTS--CHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEcCCcccch----HHHHHHHHHHHHHHcCCC-cchhheecccc--chHHHHHHHHHHH
Confidence 3568889999999999998655543211000 001123445667777753 22222122211 1111 2233332
Q ss_pred H---hCCcEEEeCCcch
Q psy10457 213 A---DTDGIVVSNDNYR 226 (508)
Q Consensus 213 ~---e~dGvIVSNDnYR 226 (508)
. +.+|+|+.||.+-
T Consensus 184 ~~~~~~~ai~~~~d~~A 200 (288)
T 3gv0_A 184 QSSDRPDGIVSISGSST 200 (288)
T ss_dssp TSSSCCSEEEESCHHHH
T ss_pred hCCCCCcEEEEcCcHHH
Confidence 2 3589999999874
No 73
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=30.30 E-value=77 Score=29.34 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=33.8
Q ss_pred CcchhhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHH
Q psy10457 47 DPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELI 88 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Eli 88 (508)
.++|..||+-+.-.||++.++..||.+.+- +.+.-++.|.
T Consensus 160 ~~~~eekV~~l~~MGf~~~~a~~AL~~~~w--d~~~A~e~L~ 199 (201)
T 3k9o_A 160 SPEYTKKIENLCAMGFDRNAVIVALSSKSW--DVETATELLL 199 (201)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTT--CHHHHHHHHH
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHHHcCC--CHHHHHHHHh
Confidence 567899999999999999999999999854 5777776665
No 74
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=30.29 E-value=11 Score=35.42 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHh---CCCCChHHHHHHH
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKL---GPNPSHNELLAEL 87 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~kl---g~~~~~n~~l~El 87 (508)
.-++....|||++.++..|+.++ .++.+..+++.+-
T Consensus 148 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~a 186 (191)
T 1ixr_A 148 EAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEA 186 (191)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 35667788999999999999988 2344444444443
No 75
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=30.01 E-value=44 Score=31.61 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCc
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRI 186 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~ 186 (508)
+..+...+++|+.++||+.|.++..... .. ....-..+...|.+.|+
T Consensus 162 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~-~~----~~~R~~Gf~~al~~~g~ 208 (339)
T 3h5o_A 162 QEDAGAAITRHLLSRGKRRIGFLGAQLD-ER----VMKRLDGYRAALDAADC 208 (339)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEESCC-HH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCCC-cc----HHHHHHHHHHHHHHCCC
Confidence 4578899999999999998655543210 00 00012335566777775
No 76
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=29.86 E-value=74 Score=28.35 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 99 ~~~~~~~a~~~L~~~G~~~I~~i~ 122 (255)
T 1byk_A 99 DEGAIKILMQRLYDQGHRNISYLG 122 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEe
Confidence 457889999999999999865543
No 77
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=29.28 E-value=26 Score=28.98 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHhCCcEEEeCC
Q psy10457 202 CYDDRFILRLAADTDGIVVSND 223 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSND 223 (508)
...|.+|+..|...|+.|||+|
T Consensus 96 ~~~D~lIaA~A~~~~~~lvT~d 117 (134)
T 3zvk_A 96 GNNDLLIASHAIAENATLVTNN 117 (134)
T ss_dssp CHHHHHHHHHHHHHTCEEEESS
T ss_pred CccHHHHHHHHHHCCCEEEECC
Confidence 4689999999999999999988
No 78
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.14 E-value=37 Score=31.52 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...|++|+.++||+.|.++.
T Consensus 115 ~~~~g~~a~~~L~~~G~~~I~~i~ 138 (303)
T 3kke_A 115 DQKGGGIATEHLITLGHSRIAFIS 138 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEe
Confidence 457889999999999999875554
No 79
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=29.05 E-value=24 Score=28.85 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhCCcEEEeCC
Q psy10457 202 CYDDRFILRLAADTDGIVVSND 223 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSND 223 (508)
...|.+|+..|...|+.|||+|
T Consensus 101 ~~~D~liaA~A~~~~~~lvT~d 122 (139)
T 2h1c_A 101 AAADGYIAATAKQHSLTVATRD 122 (139)
T ss_dssp CHHHHHHHHHHHHHTCEEECSC
T ss_pred CccHHHHHHHHHHcCCeEEECC
Confidence 5789999999999999999998
No 80
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=28.39 E-value=33 Score=30.62 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=23.4
Q ss_pred ccchHHHHHHHHhCCcEEEeCCcchhhhh
Q psy10457 202 CYDDRFILRLAADTDGIVVSNDNYRDLCL 230 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSNDnYRD~~~ 230 (508)
..-|.+|...|...|..+|||| +|+..
T Consensus 111 ~~~D~lIAAtA~~~gl~LvT~d--~dF~~ 137 (156)
T 3h87_A 111 SIPDLLIAATAELSGLTVLHVD--KDFDA 137 (156)
T ss_dssp CHHHHHHHHHHHHHTCEEEESC--THHHH
T ss_pred ChhHHHHHHHHHHCCCEEEEeC--hhhhh
Confidence 5789999999999999999998 77543
No 81
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.39 E-value=47 Score=30.24 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 106 ~~~~g~~a~~~L~~~G~~~I~~i~ 129 (288)
T 2qu7_A 106 NEEAAYIATKRVLESTCKEVGLLL 129 (288)
T ss_dssp HHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEe
Confidence 346888999999999999875554
No 82
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=28.29 E-value=45 Score=30.29 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHcCCceEEEEec
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVP 159 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP 159 (508)
+..+...|++|+.++||+.|.++..
T Consensus 115 ~~~~g~~a~~~L~~~G~~~i~~i~~ 139 (292)
T 3k4h_A 115 NYTAAREVAEYLISLGHKQIAFIGG 139 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cHHHHHHHHHHHHHCCCceEEEEeC
Confidence 4578899999999999998765543
No 83
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=28.08 E-value=36 Score=31.18 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHH-
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRL- 211 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILkl- 211 (508)
+..+...+++|+.++||+.|.++....... ........+...|.+.|+ .+.+...+.|.. +.++- .+-++
T Consensus 109 ~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~----~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~~l 181 (290)
T 3clk_A 109 DEDIGYQATNLLINEGHRQIGIAGIDQYPY----TGRKRLAGYKKALKEANI-AINQEWIKPGDY--SYTSGEQAMKAFG 181 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSEEEESCCCCTT----THHHHHHHHHHHHHHTTC-CCCGGGEECCCS--SHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEEeCCCCCc----chHHHHHHHHHHHHHcCC-CCCcceEEcCCC--ChhhHHHHHHHHh
Confidence 456888999999999999865443211000 000112344566777774 222211112211 11221 12222
Q ss_pred -HHhCCcEEEeCCcch
Q psy10457 212 -AADTDGIVVSNDNYR 226 (508)
Q Consensus 212 -A~e~dGvIVSNDnYR 226 (508)
..+.+|+|+.||.+-
T Consensus 182 ~~~~~~ai~~~~d~~a 197 (290)
T 3clk_A 182 KNTDLTGIIAASDMTA 197 (290)
T ss_dssp TTCCCSEEEESSHHHH
T ss_pred ccCCCcEEEECCcHHH
Confidence 234689999999863
No 84
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=28.04 E-value=47 Score=31.39 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILklA 212 (508)
+..+...+++|+.++||+.|.++........ ....-.-+...|.+.|+ .+.+...+.|.. +.++- .+-++-
T Consensus 161 ~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~----~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~ll 233 (340)
T 1qpz_A 161 AFEGGYMAGRYLIERGHREIGVIPGPLERNT----GAGRLAGFMKAMEEAMI-KVPESWIVQGDF--EPESGYRAMQQIL 233 (340)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCTTSHH----HHHHHHHHHHHHHHTTC-CCCGGGBCCCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCCCcccc----HHHHHHHHHHHHHHCCC-CCChhheEeCCC--CHHHHHHHHHHHH
Confidence 3568899999999999998654432110000 00012334566777774 222221122211 12221 222222
Q ss_pred H---hCCcEEEeCCcch
Q psy10457 213 A---DTDGIVVSNDNYR 226 (508)
Q Consensus 213 ~---e~dGvIVSNDnYR 226 (508)
. +.+|+|+.||.+-
T Consensus 234 ~~~~~~~ai~~~nd~~A 250 (340)
T 1qpz_A 234 SQPHRPTAVFCGGDIMA 250 (340)
T ss_dssp TSSSCCSEEEESSHHHH
T ss_pred cCCCCCcEEEECCHHHH
Confidence 2 3589999999763
No 85
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.45 E-value=67 Score=30.61 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEec
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVP 159 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP 159 (508)
+..+...+++|+.++||+.|.++..
T Consensus 171 ~~~~~~~a~~~L~~~G~r~I~~i~~ 195 (355)
T 3e3m_A 171 NERAAYDMTNALLARGFRKIVFLGE 195 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEcc
Confidence 3578899999999999998755543
No 86
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=27.36 E-value=24 Score=30.63 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.8
Q ss_pred ccchHHHHHHHHhCCcEEEeCC
Q psy10457 202 CYDDRFILRLAADTDGIVVSND 223 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSND 223 (508)
+..|.+++..|.+.|+.|||+|
T Consensus 122 ~~~Dal~lA~A~~~~~~LvT~D 143 (156)
T 2fe1_A 122 TVYDAAYVALAEKIGGKLLTLD 143 (156)
T ss_dssp CHHHHHHHHHHHHHTCEEECSC
T ss_pred CHHHHHHHHHHHHcCCCEEeCC
Confidence 5789999999999999999999
No 87
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=26.80 E-value=28 Score=32.10 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...|++|+.++||+.|.++.
T Consensus 115 ~~~~g~~a~~~L~~~G~~~I~~i~ 138 (301)
T 3miz_A 115 DYQGARDLTRYLLERGHRRIGYIR 138 (301)
T ss_dssp HHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEe
Confidence 457889999999999999876554
No 88
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.61 E-value=47 Score=30.06 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 123 ~~~~~~~a~~~l~~~G~~~I~~i~ 146 (296)
T 3brq_A 123 HKQTSFNAVAELINAGHQEIAFLT 146 (296)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred hHHHHHHHHHHHHHCCCceEEEEc
Confidence 346788999999999999875554
No 89
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=26.60 E-value=79 Score=30.18 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHcCCceEEEE
Q psy10457 135 SCIGIKICVDWFRARGHKEITVF 157 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVF 157 (508)
+..+...|++|+.++||+.|.++
T Consensus 168 ~~~~~~~a~~~L~~~G~~~I~~i 190 (348)
T 3bil_A 168 PQPGIAAAVELLAHNNALPIGYL 190 (348)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHHHHCCCCeEEEE
Confidence 45788999999999999986544
No 90
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.56 E-value=60 Score=29.91 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...|++|+.++||+.|.++.
T Consensus 110 ~~~~~~~a~~~L~~~G~~~I~~i~ 133 (294)
T 3qk7_A 110 NHAGASLAVKRLLELGHQRIAFVS 133 (294)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hHHHHHHHHHHHHHCCCceEEEEe
Confidence 457889999999999999876554
No 91
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=26.15 E-value=79 Score=28.54 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccch--HHHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDD--RFILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDD--ryILklA 212 (508)
+..+...+++|+.++||+.|.++...... . ...-..+...|.+.|+-.. +.. +.+.. +.++ ..+.++-
T Consensus 102 ~~~~g~~a~~~L~~~G~~~i~~i~~~~~~-~-----~~R~~gf~~~l~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~l 171 (280)
T 3gyb_A 102 DFRGAEIATKHLIDLGHTHIAHLRVGSGA-G-----LRRFESFEATMRAHGLEPL-SND-YLGPA--VEHAGYTETLALL 171 (280)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCSSHH-H-----HHHHHHHHHHHHHTTCCCE-ECC-CCSCC--CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEeCCCch-H-----HHHHHHHHHHHHHcCcCCC-ccc-ccCCC--CHHHHHHHHHHHH
Confidence 45788999999999999987655442111 0 0112334566777665322 111 11111 1111 1222222
Q ss_pred ---HhCCcEEEeCCcch
Q psy10457 213 ---ADTDGIVVSNDNYR 226 (508)
Q Consensus 213 ---~e~dGvIVSNDnYR 226 (508)
.+.+|+|+.||.+-
T Consensus 172 ~~~~~~~ai~~~~d~~a 188 (280)
T 3gyb_A 172 KEHPEVTAIFSSNDITA 188 (280)
T ss_dssp HHCTTCCEEEESSHHHH
T ss_pred hCCCCCCEEEECChHHH
Confidence 23589999999764
No 92
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=25.89 E-value=47 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.1
Q ss_pred ccchHHHHHHHHhCCcEEEeCC-cchhhhhcChhHHHHH
Q psy10457 202 CYDDRFILRLAADTDGIVVSND-NYRDLCLESPDFRKVV 239 (508)
Q Consensus 202 syDDryILklA~e~dGvIVSND-nYRD~~~E~Pe~K~~I 239 (508)
+.-|.++|.+|.+.|+.++|.| ++......--.+++|+
T Consensus 114 s~yDA~~lAlA~~~g~~L~T~D~~L~~~a~~~~~~~~~l 152 (158)
T 1v8p_A 114 TFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLL 152 (158)
T ss_dssp CHHHHHHHHHHHHTTCEEECSCHHHHHHSTTCBCHHHHH
T ss_pred CHHHHHHHHHHHHhCCeEEeCCHHHHHHHHhccCHHHHH
Confidence 5679999999999999999999 5554443322344443
No 93
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.69 E-value=2.4e+02 Score=23.35 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=32.0
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHhc
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKL 90 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Elikl 90 (508)
...+++-..-+||+++++..||.+-+-+ .+.-+.=|...
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 6788999999999999999999998754 66666666653
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.37 E-value=1.4e+02 Score=22.23 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHhhCCCHHHHH----HHHHHhCCCCChHHHHHHHHhcCCCC
Q psy10457 54 VDFALKLGYTEDLVQ----TALNKLGPNPSHNELLAELIKLGAQV 94 (508)
Q Consensus 54 ~~f~~klgy~~~~v~----~~l~klg~~~~~n~~l~Eliklg~~~ 94 (508)
-|.|.+||.|...|. ++++||+.. ...+++.-.+++|...
T Consensus 35 ~eIA~~l~is~~tV~~~~~r~~~kl~~~-~~~~l~~~~~~~g~~~ 78 (79)
T 1x3u_A 35 KSIAYDLDISPRTVEVHRANVMAKMKAK-SLPHLVRMALAGGFGP 78 (79)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHTCCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCC
Confidence 477888888877665 567899876 7788888888888643
No 95
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.91 E-value=45 Score=31.70 Aligned_cols=82 Identities=9% Similarity=0.004 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccch--HHHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDD--RFILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDD--ryILklA 212 (508)
+..+...+++|+.++||+.|.++....... .....-.-+...|.+.|+-..... |.. +.++ ..+.++-
T Consensus 158 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~----~~~~R~~Gf~~al~~~g~~~~~~~----~~~--~~~~~~~~~~~ll 227 (333)
T 3jvd_A 158 DEAGFFQLTESVLGGSGMNIAALVGEESLS----TTQERMRGISHAASIYGAEVTFHF----GHY--SVESGEEMAQVVF 227 (333)
T ss_dssp HHHHHHHHHHHHCCSSSCEEEEEESCTTSH----HHHHHHHHHHHHHHHTTCEEEEEE----CCS--SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEeCCCCCc----cHHHHHHHHHHHHHHCCCCEEEec----CCC--CHHHHHHHHHHHh
Confidence 457889999999999999865554321100 000112345667777776411110 100 1122 2222332
Q ss_pred Hh--CCcEEEeCCcch
Q psy10457 213 AD--TDGIVVSNDNYR 226 (508)
Q Consensus 213 ~e--~dGvIVSNDnYR 226 (508)
.+ -+|+|+.||.+-
T Consensus 228 ~~~~~~ai~~~nd~~A 243 (333)
T 3jvd_A 228 NNGLPDALIVASPRLM 243 (333)
T ss_dssp HTCCCSEEEECCHHHH
T ss_pred cCCCCcEEEECCHHHH
Confidence 23 489999999864
No 96
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=24.68 E-value=76 Score=24.58 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.5
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhCCCC
Q psy10457 52 ARVDFALKLGYTEDLVQTALNKLGPNP 78 (508)
Q Consensus 52 ~~~~f~~klgy~~~~v~~~l~klg~~~ 78 (508)
.+++-..-+||+.+++.++|..-+.+.
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnv 39 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNV 39 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence 678888999999999999999986553
No 97
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.51 E-value=1e+02 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.4
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhCCC
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLGPN 77 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg~~ 77 (508)
...+|+-..-+||+++++..||.+-+-+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n 36 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNS 36 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 5678888889999999999999998754
No 98
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.13 E-value=80 Score=22.21 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=22.9
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCCC
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGPN 77 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~~ 77 (508)
..+++-..-+||+++++..+|..-+.+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n 31 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWD 31 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcC
Confidence 367888888999999999999998654
No 99
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=23.80 E-value=62 Score=29.08 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 104 ~~~~~~~a~~~L~~~G~~~i~~i~ 127 (275)
T 3d8u_A 104 HFEVGKACTRHLIEQGFKNVGFIG 127 (275)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEc
Confidence 346788999999999999875554
No 100
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=23.75 E-value=50 Score=28.06 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=19.0
Q ss_pred cEEEeccchhhhcCCCCccchHHHHHHHHHHHH
Q psy10457 116 PVVIDGSNVAMSHGNKELFSCIGIKICVDWFRA 148 (508)
Q Consensus 116 pIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~ 148 (508)
.+||||-=+- +....-+...+..+|+|+.+
T Consensus 153 tfiINGky~v---~~~~~~s~e~~~~~i~~Ll~ 182 (184)
T 4dvc_A 153 AVVVNNRYLV---QGQSAKSLDEYFDLVNYLLT 182 (184)
T ss_dssp EEEETTTEEE---CGGGCSSHHHHHHHHHHHTT
T ss_pred EEEECCEEee---CCcCCCCHHHHHHHHHHHHh
Confidence 5889985221 11123467888889998864
No 101
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.69 E-value=26 Score=29.55 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=16.6
Q ss_pred CCCCCCC--CcccCCCcccccCCCC
Q psy10457 281 GAPCPYG--RKCTYGSKCKFNHPER 303 (508)
Q Consensus 281 ~~~cpy~--~kctyg~kck~~hp~r 303 (508)
.+.|-+. .+|+++ +|+|.|+..
T Consensus 56 ~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 56 VTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp EEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred cccchhhccCCCCCC-CcCccCChH
Confidence 4456554 589999 999999863
No 102
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=23.62 E-value=58 Score=29.89 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchH--HHHHHH
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDR--FILRLA 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDr--yILklA 212 (508)
+..+...|++|+.++||+.|.++...... .....-.-+...|.+.|+-. .+ ..+.+.. +.++- .+.++-
T Consensus 110 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~-----~~~~R~~Gf~~al~~~g~~~-~~-~~~~~~~--~~~~~~~~~~~~l 180 (289)
T 3k9c_A 110 DVAGITLAVDHLTELGHRNIAHIDGADAP-----GGADRRAGFLAAMDRHGLSA-SA-TVVTGGT--TETEGAEGMHTLL 180 (289)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCTTST-----THHHHHHHHHHHHHHTTCGG-GE-EEECCCS--SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCcEEEEeCCCCc-----cHHHHHHHHHHHHHHCCCCC-Cc-cEEECCC--CHHHHHHHHHHHH
Confidence 45788999999999999986554332110 00011234456677777531 11 1111111 12221 222222
Q ss_pred ---HhCCcEEEeCCcch
Q psy10457 213 ---ADTDGIVVSNDNYR 226 (508)
Q Consensus 213 ---~e~dGvIVSNDnYR 226 (508)
.+.+|+|+.||.+-
T Consensus 181 ~~~~~~~ai~~~~d~~A 197 (289)
T 3k9c_A 181 EMPTPPTAVVAFNDRCA 197 (289)
T ss_dssp TSSSCCSEEEESSHHHH
T ss_pred cCCCCCCEEEECChHHH
Confidence 24589999999874
No 103
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=23.38 E-value=98 Score=28.00 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 102 ~~~~~~~a~~~L~~~G~~~i~~i~ 125 (277)
T 3cs3_A 102 NRGGATQAIEQFVNVGSKKVLLLS 125 (277)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEE
T ss_pred cHHHHHHHHHHHHHcCCceEEEEe
Confidence 346888999999999999865553
No 104
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.11 E-value=44 Score=31.69 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD 214 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e 214 (508)
+..+...+++|+.++||+.|.++........ .....-.-+...|.+.| +.+.+...+.|.......-..+.++-.+
T Consensus 169 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~---~~~~R~~Gf~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 244 (344)
T 3kjx_A 169 HRRAGREMAQAILKAGYRRIGFMGTKMPLDY---RARKRFEGFTEVLGKNG-VEIEDREFYSGGSALAKGREMTQAMLER 244 (344)
T ss_dssp HHHHHHHHHHHHHHHTCCSCCEEESSTTTCH---HHHHHHHHHHHHHHHTT-CCCSCEEECSSCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEecCcccCc---cHHHHHHHHHHHHHHcC-CCCChheEEeCCCCHHHHHHHHHHHHhc
Q ss_pred C---CcEEEeCCcc
Q psy10457 215 T---DGIVVSNDNY 225 (508)
Q Consensus 215 ~---dGvIVSNDnY 225 (508)
. +|+|+.||.+
T Consensus 245 ~~~~~ai~~~nd~~ 258 (344)
T 3kjx_A 245 SPDLDFLYYSNDMI 258 (344)
T ss_dssp STTCCEEEESSHHH
T ss_pred CCCCCEEEECCHHH
No 105
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=22.90 E-value=81 Score=35.63 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCcEEEeccchhhh--cCC-------CCcc-chHHHHHHHHHHHHc-CCceEEEEe---ccccccc------CCCCCCCC
Q psy10457 114 LRPVVIDGSNVAMS--HGN-------KELF-SCIGIKICVDWFRAR-GHKEITVFV---PKWRKES------CRPDNLIK 173 (508)
Q Consensus 114 lRpIVIDGSNVAms--hG~-------~k~F-S~rGI~iAV~yF~~R-Gh~~VvVFV---P~~Rk~~------~r~d~~i~ 173 (508)
-+.|+|||++..+. ++. +... -+.|+...+.-+.+. +...|+||+ |.||.+. .|...+..
T Consensus 12 ~~~llIDg~~~l~ra~~a~~~l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~~pe~ 91 (832)
T 1bgx_T 12 GRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPED 91 (832)
T ss_dssp TTSCCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCCCCTT
T ss_pred CCEEEEEChHHHHHHHhcCCccccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHHhccccChHH
Confidence 35899999999864 221 1111 234555555444444 344577888 4566432 12211111
Q ss_pred ---h-HHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHh-----CCcEEEeCCc
Q psy10457 174 ---N-QEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAAD-----TDGIVVSNDN 224 (508)
Q Consensus 174 ---d-~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e-----~dGvIVSNDn 224 (508)
. ..+.+.|...|+-++.-.+ -.+|-.|-.+|.. ...+|||.|.
T Consensus 92 l~~q~~~i~~~l~~~gi~~i~~pg--------~EADD~iatLa~~~~~~G~~v~IvS~Dk 143 (832)
T 1bgx_T 92 FPRQLALIKELVDLLGLARLEVPG--------YEADDVLASLAKKAEKEGYEVRILTADK 143 (832)
T ss_dssp STTGGGTHHHHHHHTTCCCCCCSS--------SCHHHHHHHHHHHHHHHTCCBCCCCSST
T ss_pred HHHHHHHHHHHHHHCCCCEEEeCC--------ccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 1 1223345666876665443 3688889888874 2457999884
No 106
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=22.68 E-value=1e+02 Score=29.44 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...|++|+.++||+.|.++.
T Consensus 173 ~~~~~~~a~~~L~~~G~r~I~~i~ 196 (366)
T 3h5t_A 173 NRKAIAPAAQALIDAGHRKIGILS 196 (366)
T ss_dssp HHHHTHHHHHHHHHTTCCSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCCcEEEEe
Confidence 457889999999999999876555
No 107
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.64 E-value=1.7e+02 Score=21.01 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.5
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhC
Q psy10457 50 YSARVDFALKLGYTEDLVQTALNKLG 75 (508)
Q Consensus 50 ~~~~~~f~~klgy~~~~v~~~l~klg 75 (508)
+..+|+-...+||+++++..+|..-|
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~ 34 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS 34 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 56788888999999999999999986
No 108
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=22.03 E-value=1.3e+02 Score=26.16 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=32.0
Q ss_pred chhhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHh
Q psy10457 49 GYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIK 89 (508)
Q Consensus 49 ~~~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Elik 89 (508)
++..++.-+.-+||++.++..||..-+. +++.-+..|+.
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~n--d~erAlewL~~ 113 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNN--DQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 4566788899999999999999998854 57877877775
No 109
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.80 E-value=84 Score=29.92 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 163 ~~~~~~~a~~~L~~~G~~~I~~i~ 186 (349)
T 1jye_A 163 HEDGTRLGVEHLVALGHQQIALLA 186 (349)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEe
Confidence 346889999999999999865543
No 110
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=21.80 E-value=1.3e+02 Score=27.38 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 108 ~~~~g~~a~~~L~~~G~~~I~~i~ 131 (285)
T 3c3k_A 108 DVAASEYVVDQLVKSGKKRIALIN 131 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEe
Confidence 356788999999999999865554
No 111
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=21.67 E-value=2.2e+02 Score=23.68 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHhCCC----CChHHHHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCcEEEeccchhhhcCCCCccch
Q psy10457 61 GYTEDLVQTALNKLGPN----PSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFSC 136 (508)
Q Consensus 61 gy~~~~v~~~l~klg~~----~~~n~~l~Eliklg~~~~~~~~~~~~~~~~~~~~~~lRpIVIDGSNVAmshG~~k~FS~ 136 (508)
-||+++.-..++++=.. -.++.+|..+.+++..+ +||++=||-....--|.
T Consensus 9 DyTe~Efi~lv~~I~~~~~~~e~~d~ll~~f~~~teHP-------------------------~gSDLIfyP~~~~e~sp 63 (85)
T 1gxg_A 9 DYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHP-------------------------SGSDLIYYPEGNNDGSP 63 (85)
T ss_dssp TSCHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHTTCCT-------------------------TTTHHHHSCCTTCCSSH
T ss_pred hcCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC-------------------------CcCceeecCCCCCCCCH
Confidence 37788777777766322 12788999999987653 35666666544455788
Q ss_pred HHHHHHHHHHHHc
Q psy10457 137 IGIKICVDWFRAR 149 (508)
Q Consensus 137 rGI~iAV~yF~~R 149 (508)
.||...|.-|+..
T Consensus 64 E~Iv~~ik~wRa~ 76 (85)
T 1gxg_A 64 EAVIKEIKEWRAA 76 (85)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877644
No 112
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=21.67 E-value=1.1e+02 Score=30.15 Aligned_cols=24 Identities=4% Similarity=0.144 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...|++|+.++||+.|.++.
T Consensus 123 ~~~~g~~a~~~L~~~G~r~I~~i~ 146 (412)
T 4fe7_A 123 NYALVESAFLHLKEKGVNRFAFYG 146 (412)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCceEEEec
Confidence 457889999999999999875554
No 113
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.52 E-value=83 Score=28.63 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHH--
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLA-- 212 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA-- 212 (508)
+..+...+++|+.++||+.|.++........ .......+...|.+.|+- +.+...+.+.......-..+.++-
T Consensus 109 ~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~----~~~R~~gf~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (291)
T 3egc_A 109 NVRGARTAVEYLIARGHTRIGAIVGSAGLMT----SRERLKGFRAAMSAAGLP-VRQEWIAAGGVRADNGRDGAIKVLTG 183 (291)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECSCTTSHH----HHHHHHHHHHHHHHTTCC-CCGGGEEC------CCHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeCCCCCcC----HHHHHHHHHHHHHHcCCC-CCHHHeEeCCCChhHHHHHHHHHHhC
Confidence 4578899999999999998755543211000 001123345566666642 111111111110011112233332
Q ss_pred -HhCCcEEEeCCcch
Q psy10457 213 -ADTDGIVVSNDNYR 226 (508)
Q Consensus 213 -~e~dGvIVSNDnYR 226 (508)
.+.+|+|+.||.+-
T Consensus 184 ~~~~~ai~~~~d~~a 198 (291)
T 3egc_A 184 ADRPTALLTSSHRIT 198 (291)
T ss_dssp -CCCSEEEESSHHHH
T ss_pred CCCCcEEEECCcHHH
Confidence 34689999999774
No 114
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.27 E-value=1.2e+02 Score=27.49 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHH--cCCceEEEE
Q psy10457 135 SCIGIKICVDWFRA--RGHKEITVF 157 (508)
Q Consensus 135 S~rGI~iAV~yF~~--RGh~~VvVF 157 (508)
+..+...+++|+.+ +||+.|.++
T Consensus 107 ~~~~g~~~~~~l~~~~~g~~~i~~i 131 (291)
T 3l49_A 107 NYSIGAELALQMVADLGGKGNVLVF 131 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEE
Confidence 35678899999999 999986555
No 115
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=20.76 E-value=13 Score=32.38 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=36.1
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhC--------CCCChHHHHHHHHhcCCC
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLG--------PNPSHNELLAELIKLGAQ 93 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg--------~~~~~n~~l~Eliklg~~ 93 (508)
-.+|+++.++|-+++.|..+-.++| |......||.||=+.|..
T Consensus 37 g~rV~~ae~~Gmsee~I~~~A~~iGdyLA~~vdP~N~EerlLkELW~Va~e 87 (104)
T 3d0w_A 37 KKQVNRGKKLGLDDGKLVKSAAILGDYLAKHEEPQNGEEMLLQELWSVADE 87 (104)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHTCCCCCSHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCH
Confidence 3789999999999999888777766 667788999999988764
No 116
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=20.70 E-value=47 Score=29.87 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHcCCceEEEEe
Q psy10457 135 SCIGIKICVDWFRARGHKEITVFV 158 (508)
Q Consensus 135 S~rGI~iAV~yF~~RGh~~VvVFV 158 (508)
+..+...+++|+.++||+.|.++.
T Consensus 98 ~~~~~~~a~~~L~~~G~~~i~~i~ 121 (276)
T 2h0a_A 98 NRLGGRLAGAYLARFPGPIFAIAV 121 (276)
T ss_dssp SHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEe
Confidence 457888999999999999865543
No 117
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.45 E-value=1.1e+02 Score=22.45 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=24.7
Q ss_pred cchhhHHHHHHhhCCC-HHHHHHHHHHhCCC
Q psy10457 48 PGYSARVDFALKLGYT-EDLVQTALNKLGPN 77 (508)
Q Consensus 48 ~~~~~~~~f~~klgy~-~~~v~~~l~klg~~ 77 (508)
..|+.+++-...+||+ ++.+..||..-+-+
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gn 35 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGS 35 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC
Confidence 3588999999999996 56689999988644
No 118
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.38 E-value=59 Score=25.28 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=26.8
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHh
Q psy10457 51 SARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIK 89 (508)
Q Consensus 51 ~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Elik 89 (508)
..+|+-..-+||+++++..+|..-|.. +.+.-+.=|+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEMGFPRGRAEKALALTGNQ-GIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHHTSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCC-CHHHHHHHHHh
Confidence 356777888999999999999998622 34444444443
No 119
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=20.36 E-value=1.4e+02 Score=25.98 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=34.8
Q ss_pred CcchhhHHHHHHhhCCCHHHHHHHHHHhCCCCChHHHHHHHHhc
Q psy10457 47 DPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKL 90 (508)
Q Consensus 47 ~~~~~~~~~f~~klgy~~~~v~~~l~klg~~~~~n~~l~Elikl 90 (508)
.++-+.-|+-+...||++..+.+||.+.|. +.+.++.=|+..
T Consensus 5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~--~~e~amewL~~h 46 (118)
T 4ae4_A 5 SPSERQCVETVVNMGYSYECVLRAMKAAGA--NIEQILDYLFAH 46 (118)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHCS--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHCc--CHHHHHHHHHHh
Confidence 345567788899999999999999999996 688887777754
No 120
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=20.14 E-value=56 Score=32.19 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=22.6
Q ss_pred HhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCC
Q psy10457 213 ADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLG 261 (508)
Q Consensus 213 ~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLG 261 (508)
...|.+| -||.+-+... +++.+|..-....-| +|-.+.||
T Consensus 252 ~~fD~vI-vNddle~a~~---~l~~iI~~e~~~~~W-----VP~~~~l~ 291 (292)
T 3tvt_A 252 EYFTGVV-QGDTIEEIYS---KVKSMIWSQSGPTIW-----VPSKESLG 291 (292)
T ss_dssp TTCSEEE-CCSSHHHHHH---HHHHHHHHHTCSEEE-----EEC-----
T ss_pred hhCCEEE-ECcCHHHHHH---HHHHHHHHhhCCCeE-----ecCccccc
Confidence 3356555 5887766655 488888876665555 56666665
No 121
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=20.13 E-value=98 Score=32.70 Aligned_cols=41 Identities=2% Similarity=-0.049 Sum_probs=27.0
Q ss_pred HHHHHhCCcEEEeCCcch-hhhhcChhHHHHHhcceeeeEEeCCcc
Q psy10457 209 LRLAADTDGIVVSNDNYR-DLCLESPDFRKVVEDRILMYSFVNDRF 253 (508)
Q Consensus 209 LklA~e~dGvIVSNDnYR-D~~~E~Pe~K~~IeeRlL~YTFvgD~F 253 (508)
+.++..+|.+|| ||.+- +... +++.+|+.-.-...||...+
T Consensus 343 ~~~~~~fD~vIv-Nddl~d~a~~---~L~~ii~~~~~~~~WvP~~~ 384 (468)
T 3shw_A 343 KNNHHLFTTTIN-LNSMNDGWYG---ALKEAIQQQQNQLVWVSEGK 384 (468)
T ss_dssp HHHGGGCSEEEE-CBTTBCHHHH---HHHHHHHHHHTSCEEEEC--
T ss_pred HhhhccCCEEEE-CCCcHHHHHH---HHHHHHHHhcCCCEEeCCcc
Confidence 455667788888 77763 4444 48888888777777775433
Done!