RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10457
(508 letters)
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse,
cytoplastic, hydrolase; 2.00A {Homo sapiens}
Length = 223
Score = 276 bits (707), Expect = 4e-91
Identities = 130/203 (64%), Positives = 157/203 (77%), Gaps = 1/203 (0%)
Query: 110 PQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPD 169
+ LRPVVIDGSNVAMSHGNKE+FSC GI + V+WF RGH +ITVFVP WRKE RPD
Sbjct: 20 EGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPD 79
Query: 170 NLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLC 229
I +Q +L ELEK +ILV+TPSR +GGKR+VCYDDRFI++LA ++DGIVVSND YRDL
Sbjct: 80 VPITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQ 139
Query: 230 LESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTID-YKQNSTGAPCPYGR 288
E ++++ +E+R+LMYSFVND+FMPP+DPLGR GPSLD FL PCPYGR
Sbjct: 140 GERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLTLEHRKQPCPYGR 199
Query: 289 KCTYGSKCKFNHPERGPWPHKTV 311
KCTYG KC+F HPER P ++V
Sbjct: 200 KCTYGIKCRFFHPERPSCPQRSV 222
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse,
cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Length = 185
Score = 229 bits (585), Expect = 2e-73
Identities = 110/163 (67%), Positives = 134/163 (82%)
Query: 110 PQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPD 169
+ LRPVVIDGSNVAMSHGNKE+FSC GI + V+WF RGH +ITVFVP WRKE RPD
Sbjct: 20 EGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPD 79
Query: 170 NLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLC 229
I +Q +L ELEK +ILV+TPSR +GGKR+VCYDDRFI++LA ++DGIVVSND YRDL
Sbjct: 80 VPITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQ 139
Query: 230 LESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLT 272
E ++++ +E+R+LMYSFVND+FMPP+DPLGR GPSLD FL
Sbjct: 140 GERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLR 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 5e-09
Identities = 75/503 (14%), Positives = 146/503 (29%), Gaps = 173/503 (34%)
Query: 42 STAEYD-----PGYSARVD--FALKLGYTEDLVQTALNK-LGPNPSHNELLAELIKLGAQ 93
S E D + F L E++VQ + + L N + L IK +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQR 103
Query: 94 VPT----SFIQDNEQ---DCMPYPQ----------------AKLRP---VVIDGSNVAMS 127
P+ +I+ ++ D + + +LRP V+IDG +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----VL 159
Query: 128 HGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRK--ESCRPDNLIKNQEVLS------ 179
K + + + +C+ ++ + + +F W P+ +++ + L
Sbjct: 160 GSGK---TWVALDVCLS-YKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 180 ---------------ELEKDRILVYTPSRLIGGKR----LVCYDD--------RF----- 207
+ + RL+ K L+ + F
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAEL-----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 208 IL---RLAADTDGIVVSNDNYRDLCLESPDFRKVV---EDRILMYSFVNDRF--MPPE-- 257
IL R TD +S + L+ + E + L+ +++ R +P E
Sbjct: 268 ILLTTRFKQVTD--FLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 258 --DPLGRS--GPSL-DKFLTIDYKQNSTGAPCPYGRKCTYGSKCKFNHPERGPWPHKTVT 312
+P S S+ D T D + H T+
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDN----------------------WKHVNC--DKLTTII 359
Query: 313 ERLMEHAQKQMSEKRQVNKTLSC-PA---VPNQ----------YQHQEQQVTVHPQKTLL 358
E + + +E R++ LS P +P V + +L+
Sbjct: 360 ESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 359 SRTRSYAPDSHPEAHGSYSNLSQNSDQGAPLHQRLQRQLSLNPYEEVPQGAPPHQHIASQ 418
+ +S Y L + LH+ + ++ Y +P+
Sbjct: 418 EK---QPKESTISIPSIYLELKVKLENEYALHRSI-----VDHY-NIPKTFDS------- 461
Query: 419 NSSHNGGSSNGLNGYLNGH-GFH 440
+ L+ Y H G H
Sbjct: 462 ----DDLIPPYLDQYFYSHIGHH 480
Score = 46.4 bits (109), Expect = 2e-05
Identities = 54/353 (15%), Positives = 99/353 (28%), Gaps = 122/353 (34%)
Query: 33 TPHESLSRQSTAEY--DPGYSARVDFALKLGYTEDLVQTALNKLGPNPSH-NELL----- 84
+P L Y DP +++R D + + +Q L +L + + N LL
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 85 --AELIK--------------------LGAQVPTSFIQDNEQDCMPYPQAK--------- 113
A+ L A T D+ + + K
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 114 ----LRPVVIDGSNVAMS-----------------HGNKELFSCIGIKICVDW-----FR 147
L V+ + +S H N + + I I+ ++ +R
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYR 372
Query: 148 ARGHKEITVF-----VPK------WRKESCRPDNLIKNQ-EVLSELEKD--RILVYTPSR 193
++VF +P W ++ N+ S +EK + PS
Sbjct: 373 KM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 194 LIGG-----------KRLVCYDDRFILRLAADTDGIVV-SNDNY-----------RDLCL 230
+ + +V D + + D+D ++ D Y +
Sbjct: 432 YLELKVKLENEYALHRSIV---DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 231 ESPDFRKVVEDRILMYSFVNDRFM-----PPEDPLGRSGPSLDKFLTID-YKQ 277
FR V F++ RF+ SG L+ + YK
Sbjct: 489 RMTLFRMV---------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Score = 41.4 bits (96), Expect = 7e-04
Identities = 64/477 (13%), Positives = 124/477 (25%), Gaps = 177/477 (37%)
Query: 55 DFALKLGYTEDLVQTALNK--------LGPNPSHNELLAELIKL-GAQVPTSFIQDNEQD 105
+F K +D+ ++ L+K S L + ++ F+++ +
Sbjct: 32 NFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 106 CMPYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKES 165
+ + ++ S ++ R R + + VF
Sbjct: 90 NYKFLMSPIKTEQRQPS------MMTRMYI---------EQRDRLYNDNQVFAKYNV--- 131
Query: 166 CRPDNLIKNQEVLSELEKDR-ILVYTPSRLIG----GK----RLVCYDDRFILRLAADTD 216
R +K ++ L EL + +L+ G GK VC + ++
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLID------GVLGSGKTWVALDVCLSYKVQCKMD---F 182
Query: 217 GIV---VSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTI 273
I + N N SP E + M + + P D I
Sbjct: 183 KIFWLNLKNCN-------SP------ETVLEMLQKLLYQIDPNWTSRS------DHSSNI 223
Query: 274 DYKQNSTGAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMS--------E 325
+ +S + RL++ +
Sbjct: 224 KLRIHSI----------------------------QAELRRLLKSKPYENCLLVLLNVQN 255
Query: 326 KRQVNK-TLSCPAVPNQYQHQEQQVTVHPQKTLL-SRTRSYAPDSHPEAHGSYSNLSQNS 383
+ N LSC K LL +R + D A ++ +L +S
Sbjct: 256 AKAWNAFNLSC-------------------KILLTTRFKQVT-DFLSAATTTHISLDHHS 295
Query: 384 DQGAPLHQRLQRQLSLN---------PYEEVPQGAPPHQHIASQNSSHNGGSSNGLNGYL 434
L + L L P EV P + ++ +
Sbjct: 296 M---TLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP--RRLS-----------------I 332
Query: 435 NGHGFHNGHNAPNG----SHNGMTR---------NPYEEQKERMRLHYHLASLFPED 478
+G + + + +T P E +K + S+FP
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----MFDRLSVFPPS 384
Score = 34.1 bits (77), Expect = 0.13
Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 70/244 (28%)
Query: 37 SLSRQSTAEYDPGYSARVDFA------------LKL---GYTEDLVQTALNKL------- 74
SL+ AEY + + L L + V +NKL
Sbjct: 362 SLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 75 -GPNPSHNELLAELIKLGAQVPT------SFI-QDNEQDCMPYPQAKLRPVVIDG----- 121
P S + + ++L ++ S + N + L P +D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--FDSDDLIPPYLDQYFYSH 476
Query: 122 -----SNVAMSHGNKELFSCIGIKICVD--WFRARGHKEITVFVPKWRKESCRPDNL--- 171
N+ LF + +D + + I W + L
Sbjct: 477 IGHHLKNIEHPE-RMTLFR----MVFLDFRFLEQK----IRHDSTAWNASGSILNTLQQL 527
Query: 172 -------IKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDN 224
N L IL + P + L+C +LR+A + + +
Sbjct: 528 KFYKPYICDNDPKYERLVNA-ILDFLPKI---EENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 225 YRDL 228
++ +
Sbjct: 584 HKQV 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 44.2 bits (103), Expect = 2e-05
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 345 QEQQVTVHPQKTLLSRTRSYAPDSHP 370
++Q + K L + + YA DS P
Sbjct: 18 EKQAL-----KKLQASLKLYADDSAP 38
Score = 29.5 bits (65), Expect = 1.5
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 4/20 (20%)
Query: 391 QRLQRQLSLNPYEEVPQGAP 410
++LQ L L Y AP
Sbjct: 23 KKLQASLKL--YA--DDSAP 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.004
Identities = 89/503 (17%), Positives = 154/503 (30%), Gaps = 167/503 (33%)
Query: 30 EPATPHESLSRQSTAEYDPGYSARVDFALKLGYTEDLVQTALNK-----LGPNPSHNELL 84
EP TP E + + + GY + + K+G + ++ L + L N H L
Sbjct: 53 EPTTPAELVGK-----F-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-LA 105
Query: 85 AELIKLGAQVPTSFIQDNEQDCMPYPQAKL---RPVVIDGSNV---AMSHGNKELFSCIG 138
A+L+ + T+ ++ E Y A++ RP ++ A+ GN +L + G
Sbjct: 106 AKLL---QENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 139 IKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRIL--VYTPSRLIG 196
+G+ + EL R L Y
Sbjct: 162 ---------GQGN----------------------TDDYFEEL---RDLYQTYHV----- 182
Query: 197 GKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPP 256
LV I A ++ + + + + + + +E+ ++ P
Sbjct: 183 ---LV---GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP-------SNT--PD 227
Query: 257 EDPLGR---SGPSLDKFLTIDYKQNSTGAPCPYGRKCTYGSKCK---FNHPE-----RGP 305
+D L S P + + Q Y K F E +G
Sbjct: 228 KDYLLSIPISCPLI--GVI----Q-----------LAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 306 WPHKT--VTERLMEHAQKQMSEKRQVNKTLS--------CPAVPNQYQHQEQQVTVHPQK 355
H VT + S V K ++ C + P
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-----------YEAY--PNT 317
Query: 356 TLLSRTRSYAPDSHPEAHGSY----SNLSQNSDQGAPLHQRLQRQLSLNPYEEVPQGAPP 411
+L + + + E S SNL+Q + + + N + +P G
Sbjct: 318 SLPPSILEDSLE-NNEGVPSPMLSISNLTQ-----EQVQDYVNK---TNSH--LPAGK-- 364
Query: 412 HQHIASQNSSHN---GGSSNGLNGYLNGHGFHNGHNAPNGSHNGMTRNPYEEQKER--MR 466
I+ N + N G L G LN AP+G +R P+ E+K + R
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYG-LNLT-LRKAK-APSGLDQ--SRIPFSERKLKFSNR 419
Query: 467 -L------HYHL----ASLFPED 478
L H HL + L +D
Sbjct: 420 FLPVASPFHSHLLVPASDLINKD 442
Score = 35.0 bits (80), Expect = 0.074
Identities = 72/451 (15%), Positives = 118/451 (26%), Gaps = 163/451 (36%)
Query: 165 SCRPDNLIKNQEVLS--ELEKDRILVYTPSRL-IGGKRLVCYDDRFILRLAADTDGIVVS 221
S RP L LS LE +LV P+ +L ++F L T+G
Sbjct: 5 STRP--L-----TLSHGSLE-HVLLV--PTASFFIASQL---QEQFNKILPEPTEGFAAD 51
Query: 222 NDNYRDLCLESPDFRKVVE--DRILMYSFVNDRFMPPEDPLGRSGPSL--------DKFL 271
++ +P E + L +V+ +G+ L + +L
Sbjct: 52 DE------PTTP-----AELVGKFL--GYVSSLV--EPSKVGQFDQVLNLCLTEFENCYL 96
Query: 272 ----------TIDYKQNSTGAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQK 321
+ + ++T K ++ P L +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-----LFRAVGE 151
Query: 322 -----------Q------MSEKRQVNKTLSCPAVPNQYQHQEQQVTVHPQKTL--LSRTR 362
Q E R + +T Y + +TL L RT
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQT---------YHVLVGDLIKFSAETLSELIRTT 202
Query: 363 SYA----------------PDSHPEAHGSYSNLSQNSDQGAPLHQRLQ--------RQLS 398
A P + P+ Y S PL +Q + L
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDK--DYLLSIPIS---CPLIGVIQLAHYVVTAKLLG 257
Query: 399 LNPYE--EVPQGAPPHQH-------IASQNS--SHNGGSSNGLNGYLNGHGFH------- 440
P E +GA H IA +S S + L G
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPN 316
Query: 441 -------------NGHNAPNGSH----NGMTRNPYEEQKERMRLHY----HLA-SLF--P 476
N P S + +T+ ++ + H + SL
Sbjct: 317 TSLPPSILEDSLENNEGVP--SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 477 EDQVVAAMQAHPGETSAHVLCATILAMFPPS 507
++ VV+ P S + L T+ PS
Sbjct: 375 KNLVVS---GPP--QSLYGLNLTLRKAKAPS 400
Score = 31.9 bits (72), Expect = 0.66
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 30/113 (26%)
Query: 226 RDLCLESPDFRKVVE--DRILM--YSF-----VNDRFMPPEDPL---GRSGPSL-DKFLT 272
DL S + V D Y F V + P + G G + + +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN--PVNLTIHFGGEKGKRIRENYSA 1690
Query: 273 IDYKQNSTGAPCP---YGRKCTYGSKCKFNHPERGPWPHKTVTERLM--EHAQ 320
+ ++ G + + + F + L + Q
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK----------GLLSATQFTQ 1733
Score = 31.6 bits (71), Expect = 0.86
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 47/155 (30%)
Query: 367 DSH-PEAHG-SYSNLSQNSDQGAPLH------QRLQRQLSLNPYEEVPQGAPPHQHIASQ 418
D+H + +G S ++ N+ +H +R++ S +E + G + I
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-- 1707
Query: 419 NSSHNGGSSNGLNGYLNGHGFHNGHNAPNGSHNGMTRN--P---------YEEQKERMRL 467
+N + + F + G + T+ P +E+ K +
Sbjct: 1708 ---------KEINEHSTSYTF----RSEKGLLS-ATQFTQPALTLMEKAAFEDLKSK--- 1750
Query: 468 HYHLASLFPEDQVVAAMQAHP-GETSAHVLCATIL 501
L P D A H GE +A A ++
Sbjct: 1751 -----GLIPADATFAG---HSLGEYAALASLADVM 1777
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein;
NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Length = 77
Score = 30.7 bits (69), Expect = 0.21
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 283 PCPYGRK---CTYGSKCKFNHPER 303
C + C YGS+C F H
Sbjct: 52 LCHKFKLQGRCPYGSRCHFIHNPT 75
Score = 28.8 bits (64), Expect = 1.0
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 283 PCPY---GRKCTYGSKCKFNHPE 302
C +C YG+KC+F H
Sbjct: 14 LCRTYSESGRCRYGAKCQFAHGL 36
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 32.8 bits (75), Expect = 0.30
Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 225 YRDLCLESPDFRKVVEDRILMYSFVNDRFMPPED----PLGRSGPSLDKFLTIDYKQNST 280
YRD L+ ++ R+ + D + P P+ S K ++ D+
Sbjct: 119 YRD-ALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCTKNISYDFMIFEK 177
Query: 281 GAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQVNKTLSCPAVPN 340
K T + + + + + K + + P++
Sbjct: 178 ------QEKKTLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSIRF 231
Query: 341 QYQHQEQQ 348
+H E Q
Sbjct: 232 GREHYEFQ 239
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein;
NMR {Saccharomyces cerevisiae S288C}
Length = 80
Score = 29.1 bits (65), Expect = 0.60
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 275 YKQNSTGAPCPYGRKCTYGSKCKFNHPERGP 305
Y+ + C G CT C F HP
Sbjct: 25 YRHARSHIMCREGANCTRI-DCLFGHPINED 54
Score = 28.4 bits (63), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 283 PCPYGRKCTYGSKCKFNHPERGP 305
C +G CT +CK+ H
Sbjct: 11 QCKFGTHCT-NKRCKYRHARSHI 32
Score = 26.4 bits (58), Expect = 5.4
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 283 PCPYGRKCTYGSKCKFNHPERGPWPHK 309
C +G C C F HP P K
Sbjct: 54 DCRFGVNCK-NIYCLFRHPPGRVLPEK 79
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain,
mycobacteium tuberculos molecule binding domain; 2.30A
{Mycobacterium tuberculosis}
Length = 185
Score = 30.8 bits (70), Expect = 0.62
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 209 LRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVND---RFMPPEDPLGRS 263
+ D D V + ++ R + P +E + VN F P D +G+
Sbjct: 23 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQP 80
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction,
fatty-acid binding, sigma regulator, signaling protein;
HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Length = 158
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 209 LRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVND---RFMPPEDPLGRS 263
+ D D V + ++ R + P +E + VN F P D +G+
Sbjct: 3 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQP 60
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Length = 98
Score = 27.4 bits (60), Expect = 3.8
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 283 PCPY---GRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQV 329
PC C G C F+H + + + L + A+ ++++V
Sbjct: 38 PCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEV 87
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved
unknown protein, structural genomics, PSI; NMR
{Rhodopseudomonas palustris} SCOP: a.282.1.1
Length = 130
Score = 27.8 bits (61), Expect = 4.1
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 47 DPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTS 97
D SAR + A +LGY+ D+ +A + H +++++L+ G ++P
Sbjct: 80 DSSLSARKELAKELGYSGDMNDSASMNIW---LHKQVMSKLVANGGKLPPE 127
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural
genomics, MCSG, S genomics, unknown function; 2.82A
{Synechococcus SP}
Length = 150
Score = 28.1 bits (62), Expect = 4.3
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 311 VTERLMEHAQKQMSEKRQVNKTLSCPAVPNQYQHQEQQVTVHPQKTLLSRTRSYAPDSHP 370
VT E A++++S + Q Q+ Q + R A P
Sbjct: 22 VTPTWKEEAEREISN--GI----------ANADQQLAQLEQEGQTVVDQVRRQSANPLDP 69
Query: 371 EAHGSYSNL--------SQNSDQGAPLHQRLQRQLSLNPYEEVPQG 408
+N+ S+ +Q L Q+ + L + V QG
Sbjct: 70 RVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRELEMDQIVEQG 115
>1i0r_A Conserved hypothetical protein; six stranded antiparallel
beta-barrel, FMN and NADP+ binding domain,
oxidoreductase; HET: FMN; 1.50A {Archaeoglobus fulgidus}
SCOP: b.45.1.2 PDB: 1i0s_A*
Length = 169
Score = 28.0 bits (63), Expect = 5.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 261 GRSGPSLDKFLTIDYKQNSTGAP 283
R +KF ++YK TG P
Sbjct: 81 FRKSSEFEKFDGVEYKTGKTGVP 103
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 28.0 bits (62), Expect = 8.9
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 324 SEKRQVNKTLSCPAVPNQYQHQEQQVTVHPQKTLLSRTRSYAPDSHPEAHGSYSNLSQNS 383
+ ++ S A P+ Q +++ QK + P G
Sbjct: 349 DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGY--P 406
Query: 384 DQGAPLHQRLQRQLSLNPYEEVPQGAPP 411
QG P + P PQGAPP
Sbjct: 407 PQGYPPQGYPPQGYPPPPQGAPPQGAPP 434
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.407
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,775,771
Number of extensions: 465165
Number of successful extensions: 1058
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1044
Number of HSP's successfully gapped: 32
Length of query: 508
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 410
Effective length of database: 3,965,535
Effective search space: 1625869350
Effective search space used: 1625869350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.9 bits)