RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10457
         (508 letters)



>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 125

 Score = 28.6 bits (64), Expect = 0.83
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 28/123 (22%)

Query: 113 KLRPVVIDGSNVAMSHGN------KELFSCIGIKICVDWFRARGHKEITVFVPKWRKESC 166
           K+R  V+D  NV M           +L      +  +        +E+            
Sbjct: 1   KVRCAVVDT-NVLMYVYLNKADVVGQLREFGFSRFLITAS---VKRELEKLEMS-----L 51

Query: 167 RPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYR 226
           R    +  +  L  LE   ++                 D  ++  A     I+++ND  +
Sbjct: 52  RGKEKVAARFALKLLEHFEVVETES-----------EGDPSLIEAAEKYGCILITND--K 98

Query: 227 DLC 229
           +L 
Sbjct: 99  ELK 101


>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
           protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 56

 Score = 26.0 bits (57), Expect = 1.7
 Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 3/21 (14%)

Query: 283 PCPY---GRKCTYGSKCKFNH 300
           PC        C  G  C F+H
Sbjct: 2   PCKLYHTTGNCINGDDCMFSH 22


>d1axha_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian
           funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
          Length = 37

 Score = 25.4 bits (55), Expect = 2.0
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 280 TGAPCPYGRKCTYGSKCKFNHPERG 304
           +G PCPY   C   S C F   E G
Sbjct: 7   SGQPCPYNENCCSQS-CTFKENENG 30


>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 25.0 bits (55), Expect = 2.9
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 287 GRKCTYGSKCKFNHPER 303
              C YG KC+F H   
Sbjct: 15  SGTCKYGEKCQFAHGFH 31


>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 24.6 bits (54), Expect = 3.9
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 290 CTYGSKCKFNHPE 302
           C YG +C F H  
Sbjct: 20  CPYGPRCHFIHNA 32


>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 24.3 bits (53), Expect = 4.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 287 GRKCTYGSKCKFNHPER 303
             +C YG+KC+F H   
Sbjct: 18  SGRCRYGAKCQFAHGLG 34


>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 143

 Score = 26.2 bits (57), Expect = 6.5
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 459 EEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMFPP 506
            EQ E+ RL   LA+   E  V    +   G   A    A ++++  P
Sbjct: 79  REQPEQARLALTLAAAESERFV----RQGTGNDEAGAANADVVSLTCP 122


>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 188

 Score = 26.2 bits (57), Expect = 7.1
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 262 RSGPSLDKFLTIDYKQNSTGAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQK 321
           + G    + +    K+N             +G   KF      P       E L+E   K
Sbjct: 52  KGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCEELLEKTVK 111

Query: 322 QMSEKRQVN--KTLSCPAV 338
                      K+++ P++
Sbjct: 112 NCLALADDRKLKSIAFPSI 130


>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 130

 Score = 25.9 bits (57), Expect = 7.3
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 47  DPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTS 97
           D   SAR + A +LGY+ D+  +A   +     H +++++L+  G ++P  
Sbjct: 80  DSSLSARKELAKELGYSGDMNDSASMNIW---LHKQVMSKLVANGGKLPPE 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,911,826
Number of extensions: 90078
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 11
Length of query: 508
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,185,626
Effective search space: 496777294
Effective search space used: 496777294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)