BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10458
(563 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D0D3|PAPD1_MOUSE Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2
SV=1
Length = 585
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 178/499 (35%), Positives = 259/499 (51%), Gaps = 46/499 (9%)
Query: 21 VLSKYFVPSIEYRRLEAQRSIL-----------FGTVQSMH-----HYTLPGQTHFVIVE 64
L K F + RR +AQR++L F S H H+ F +VE
Sbjct: 58 TLQKKFSEVQKERREQAQRTVLIHCPNNINEKKFLKYLSQHGPVNNHFFYESFGLFAVVE 117
Query: 65 MKDSQVTRRILNKCGHLDKS--QVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVF 122
+ + N +S IP +S FL R +++S + T N
Sbjct: 118 FCQKDSIKSLQNGTHTPTQSTEAAIPFKSRFLNLRLKNPSSQVSGQPFV-----QTTNQS 172
Query: 123 PPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFP 182
PP+ + E L+ +I +Q+ TL ++ + N RLR L +E + FP C I P
Sbjct: 173 PPSSKKLFELLSYAESIEEQLNTLLKAFQLTEENIRLRHLTCSLIEDIAAAYFPSCVIRP 232
Query: 183 FGSSVNNFGKLGCDLDLVLQLD----LQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETV 238
FGSSVN FGKLGCDLD+ L LD L + + F K+ + SER T + L +
Sbjct: 233 FGSSVNTFGKLGCDLDMFLDLDETGKLDVHKNTGNFFMEFQVKN-VPSERIATQKILSVI 291
Query: 239 GDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELL 298
G+ C F PGC V++IL AR P+++++H S +CDL+ N AL +ELL
Sbjct: 292 GE--------CLDNFGPGCVGVQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELL 343
Query: 299 YLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQ--SVKVLPPLK 356
Y++G +D RVR LVF+++ WA+ +LT+ PG WITNFSLT++V+F+LQ S +LP L
Sbjct: 344 YIYGSLDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTVMVIFFLQRRSPPILPTLD 403
Query: 357 LLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFN 416
L A +DR I E G NCTFV+D+ K+Q P +T++L L+ FFE++ + FN
Sbjct: 404 SLKSIADAEDRCILE-GNNCTFVQDVNKIQ-----PSGNTETLELLIKEFFEYFGNFAFN 457
Query: 417 NQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTAN 476
I++ G KP+ LYI NP E LN+SKNVS +L++ R+++W LE
Sbjct: 458 KNSINIRQGREQNKPDSSPLYIQNPFETSLNISKNVSQSQLQKFVELARDSAWILEQ--E 515
Query: 477 SNNKPSHTPSESWGLLELF 495
N+P + + WGL L
Sbjct: 516 DKNQPFSSSRQPWGLAALL 534
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1
SV=1
Length = 582
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/416 (37%), Positives = 238/416 (57%), Gaps = 31/416 (7%)
Query: 86 VIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTT 145
IP RS F + KN+T S+ +++ + N P + + E L +I Q+ T
Sbjct: 141 AIPFRSRFFNLKL-KNQT-----SERSRVR--SSNQLPRSNKQLFELLCYAESIDDQLNT 192
Query: 146 LHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLD- 204
L ++ + NT+LR+L +E + FP C + PFGSSVN FGKLGCDLD+ L LD
Sbjct: 193 LLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDE 252
Query: 205 ---LQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVK 261
L + + + F K+ + SER T + L +G+ C F PGC V+
Sbjct: 253 TRNLSAHKISGNFLMEFQVKN-VPSERIATQKILSVLGE--------CLDHFGPGCVGVQ 303
Query: 262 RILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKD 321
+IL AR P+++++H S +CDL+ N AL +ELLY++G +D RVR LVF+++ WA+
Sbjct: 304 KILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARA 363
Query: 322 INLTNPTPGRWITNFSLTLLVLFYLQ--SVKVLPPLKLLIDEASLKDRRISEDGVNCTFV 379
+LT+ PG WITNFSLT++V+F+LQ S +LP L L A +D+ + E G NCTFV
Sbjct: 364 HSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIE-GNNCTFV 422
Query: 380 RDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYIN 439
RD+++++ P Q+T++L LL FFE++ + F+ I++ G KP+ LYI
Sbjct: 423 RDLSRIK-----PSQNTETLELLLKEFFEYFGNFAFDKNSINIRQGREQNKPDSSPLYIQ 477
Query: 440 NPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELF 495
NP E LN+SKNVS +L++ R ++W L+ ++PS + + WGL+ L
Sbjct: 478 NPFETSLNISKNVSQSQLQKFVDLARESAWILQQ--EDTDRPSISSNRPWGLVSLL 531
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 196/417 (47%), Gaps = 62/417 (14%)
Query: 133 LASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGK 192
L ++ +Q+ + ++ D ++R L+ ++ + FP C I PFGSSVN FG
Sbjct: 153 LCKAMSVNEQIQKVVESLELKDNEKKVRDLLVQLLQEVFTEFFPDCQIVPFGSSVNTFGL 212
Query: 193 LGCDLDLVLQLD-----------LQSQGDN--DQCRLMFHCKSSLGSERSQTLRHLETVG 239
CDLDL L L+ + G+N + CR + S+ S+ + +
Sbjct: 213 HSCDLDLFLDLENTKVFQARAKSSEQTGENQSEDCR----SEDSILSDIDLSTASPAEIL 268
Query: 240 DLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLY 299
+L+ + L C +PG +V+ + AR+P++K++H L+ D+++ N A+ + L
Sbjct: 269 ELVAVILRKC----VPGVHKVQALSTARLPVVKFSHKELNLQGDITINNRLAVRNTKFLQ 324
Query: 300 LFGEIDWRVRPLVFTIKKWAKDINLTN--PTPGRWITNFSLTLLVLFYLQSVK--VLPPL 355
L ID R+RPLV+TI+ WAK L PG + N++LTLLV+F+LQ+ VLP +
Sbjct: 325 LCSGIDSRLRPLVYTIRLWAKQKQLAGNLSGPGPLLNNYALTLLVIFFLQNRDPPVLPSV 384
Query: 356 KLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDF 415
L + + ++ + + +CTF Q P ++T+ L TLLFGFF FYS++DF
Sbjct: 385 NQLKN-MACEEEECAIEEWDCTFPS-----QPFSVPPSKNTEDLCTLLFGFFTFYSKFDF 438
Query: 416 NNQGISLYLG----------------------SPIPK----PEHGALYINNPLERGLNVS 449
+SL G SP PK P G + + +P E NV+
Sbjct: 439 PASVVSLRDGHVLPITDFLKSDMEALKTADASSPKPKRSSAPRLGPMNVLDPFELNHNVA 498
Query: 450 KNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELFKKQNLSEKAKS 506
N++ + K E A S +SWGL+ LF Q SE A S
Sbjct: 499 GNLNERTQKNFKRECCEAEKYCRSLQYQRKS---AKGKSWGLVRLFAPQ--SEAAAS 550
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 155/309 (50%), Gaps = 35/309 (11%)
Query: 206 QSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILG 265
+ QGD DQ + + +L E+++ LE VG +L+ GC +PG +V+ +
Sbjct: 313 EDQGDGDQGKAV-ELAEALKGEKAEGGAMLELVGSILR----GC----VPGVYRVQTVPS 363
Query: 266 ARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLT 325
AR P++K+ H S L D+S++N AL+ + L L E+D RVRPLV+T++ WA+ L+
Sbjct: 364 ARCPVVKFCHRPSGLHGDISLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLS 423
Query: 326 NPTPGRWITNFSLTLLVLFYLQS--VKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDIT 383
P + N++LTLLV+++LQ+ VLP + L +A ++ DG +C+F RD +
Sbjct: 424 GSGP--LLNNYALTLLVIYFLQTRDPPVLPTVSQLTQKAG---EQVEVDGWDCSFPRDAS 478
Query: 384 KLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDF--------NNQGISLYLGSPIPKPEH-- 433
+L+ P + + L++LL FF S +D Q +S+ G P E
Sbjct: 479 RLE-----PSTNKEPLSSLLAQFFSCVSCWDLRGSLLSLREGQALSVAGGLPSNLSEGLR 533
Query: 434 -GALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLL 492
G + + +P + NV+ NV+ RL+ R A+ S + WGLL
Sbjct: 534 LGPMNLQDPFDLSHNVAANVTSRVAGRLQNCCRAAANYCRSLQYQRRS---SRGRDWGLL 590
Query: 493 ELFKKQNLS 501
L + + S
Sbjct: 591 PLLQPSSPS 599
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 60 FVIVEMKDSQVTRRILNKCGHLDKSQVIPVRS-PFLWFRANKNKTKLSDESDYAKINCDT 118
F IVEM D +L++ H + + VR + F++ +++ ++ D+
Sbjct: 94 FAIVEMGDLGAREAVLSQPQHSLGGRRLRVRPREQIEFQSPASRSP-------KRVAPDS 146
Query: 119 HNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLC 178
H + + LA + QM L + ++++ +LR LV ++ + FP C
Sbjct: 147 HQLI--------KALAEAPDVEAQMVKLVGLRELSEAERQLRSLVVALMQEVFAEFFPGC 198
Query: 179 AIFPFGSSVNNFGKLGC 195
+ PFGSS+N+F GC
Sbjct: 199 VVHPFGSSINSFDVHGC 215
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 140/255 (54%), Gaps = 29/255 (11%)
Query: 227 ERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSM 286
E+++ LE VG +L+ GC +PG +V+ + AR P++K+ H S L D+S+
Sbjct: 333 EKAEGAAMLELVGSILR----GC----VPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSL 384
Query: 287 TNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYL 346
+N AL+ + L L E+D RVRPLV+T++ WA+ L+ P ++N++LTLLV+++L
Sbjct: 385 SNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGP--LLSNYALTLLVIYFL 442
Query: 347 QS--VKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLF 404
Q+ VLP + L +A + ++ DG +C+F RD ++L+ PSI + + L++LL
Sbjct: 443 QTRDPPVLPTVSQLTQKAG-EGEQVEVDGWDCSFPRDASRLE--PSI---NVEPLSSLLA 496
Query: 405 GFFEFYSQYDFNNQGISLYLGSPIPK----PEH-------GALYINNPLERGLNVSKNVS 453
FF S +D +SL G +P P + G L + +P + NV+ NV+
Sbjct: 497 QFFSCVSCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAANVT 556
Query: 454 FEELERLKVEVRNAS 468
RL+ R A+
Sbjct: 557 SRVAGRLQNCCRAAA 571
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 60 FVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTH 119
F IVEM D +L++ H ++ + + ++ ++ +
Sbjct: 94 FAIVEMGDVGAREAVLSQSQHS--------------LGGHRLRVRPREQKEFQSPASKSP 139
Query: 120 NVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCA 179
P + + LA + QM L + ++++ +LR LV ++ + FP C
Sbjct: 140 KGAAPDSHQLAKALAEAADVGAQMIKLVGLRELSEAERQLRSLVVALMQEVFTEFFPGCV 199
Query: 180 IFPFGSSVNNFGKLGC 195
+ PFGSS+N+F GC
Sbjct: 200 VHPFGSSINSFDVHGC 215
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Ailuropoda
melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 147/276 (53%), Gaps = 30/276 (10%)
Query: 206 QSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILG 265
+ +G+ D + + +L E+++ + LE VG +L+ GC +PG +V+ +
Sbjct: 312 EDRGEGDLGKAL-ELAEALSGEKTEGVAMLELVGSILR----GC----VPGVYRVQTVPS 362
Query: 266 ARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLT 325
AR P++K+ H S L D+S++N AL+ + L L E+D RVRPLV+T++ WA+ L+
Sbjct: 363 ARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLS 422
Query: 326 NPTPGRWITNFSLTLLVLFYLQS--VKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDIT 383
P ++N++LTLLV+++LQ+ VLP + L +A + ++ DG +C+F RD +
Sbjct: 423 GSGP--LLSNYALTLLVIYFLQTRDPPVLPTVSQLTQKAG-EGEQVEVDGWDCSFPRDAS 479
Query: 384 KLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPK----PEH------ 433
L+ P + + L++LL FF S +D +SL G +P P +
Sbjct: 480 GLE-----PSTNKEPLSSLLAQFFSCVSCWDLRGSLLSLREGQALPVAGDLPSNRWEGLR 534
Query: 434 -GALYINNPLERGLNVSKNVSFEELERLKVEVRNAS 468
G + + +P + NV+ NV+ RL+ + A+
Sbjct: 535 LGPMNLQDPFDLSHNVAANVTSRVAGRLQNSCQAAA 570
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 60 FVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTH 119
F IVEM D +L++ H ++ + + ++ ++ +
Sbjct: 94 FAIVEMGDVGTREAVLSQPQHT--------------LGGHRLRVRPREQKEFQSPASKSP 139
Query: 120 NVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCA 179
P + + LA + QM L + ++++ +LR LV ++ + FP C
Sbjct: 140 KGAAPDSHQLTKALAEAPDVGAQMVKLVGLRELSEAERQLRNLVVALMQEVFTEFFPGCV 199
Query: 180 IFPFGSSVNNFGKLGC 195
+ PFGSS+N+F GC
Sbjct: 200 VHPFGSSINSFDVHGC 215
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 136/255 (53%), Gaps = 29/255 (11%)
Query: 227 ERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSM 286
E+ + LE VG +L+ GC +PG +V+ + AR P++K+ H S L D+S+
Sbjct: 334 EKEEATAVLELVGSILR----GC----VPGVYRVQTVPSARRPVVKFCHRPSGLHGDISL 385
Query: 287 TNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYL 346
+N ALY + L L E+D RVRPLV+T++ WA+ L+ P + N++LTLLV+++L
Sbjct: 386 SNRLALYNSRFLNLCSEMDSRVRPLVYTLRCWAQHNGLSGGGP--LLNNYALTLLVIYFL 443
Query: 347 QS--VKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLF 404
Q+ VLP + L + S + ++ DG +C+F +D ++L+ P + + L++LL
Sbjct: 444 QTRDPPVLPTVAQLT-QRSGEGEQVEVDGWDCSFPKDASRLE-----PSTNVEPLSSLLA 497
Query: 405 GFFEFYSQYDFNN------QGISLYLGSPIPKP-----EHGALYINNPLERGLNVSKNVS 453
FF S +D + +G +L + +P G + + +P + NV+ NV+
Sbjct: 498 QFFSCVSCWDLSGSLLSLREGQALMVAGGLPSDLWEGLRLGPMNLQDPFDLSHNVAANVT 557
Query: 454 FEELERLKVEVRNAS 468
+RL+ A+
Sbjct: 558 SRVAKRLQSSCGAAA 572
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 60 FVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTH 119
F IVEM D +L++ H + VR R K + +S ++ ++H
Sbjct: 94 FAIVEMGDISAREAVLSQPKHSLGGHTLRVRP-----REQKEFQSPASKSPKG-VDSNSH 147
Query: 120 NVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCA 179
+ + LA + QM L + ++++ +LR LV ++ + FP C
Sbjct: 148 QLA--------QALAEAADVGAQMVKLVELRELSEAERQLRTLVVALMQEVFTEFFPGCV 199
Query: 180 IFPFGSSVNNFGKLGC 195
+ PFGSSVN+F GC
Sbjct: 200 VHPFGSSVNSFDVHGC 215
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 132/248 (53%), Gaps = 29/248 (11%)
Query: 227 ERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSM 286
E+ + LE VG +L+ GC +PG +V+ + AR P++K+ H S L D+S+
Sbjct: 336 EKEEAAAVLELVGSILR----GC----VPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSL 387
Query: 287 TNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYL 346
+N ALY + L L E+D RVRPLV+T++ WA+ L+ P + N++LTLLV+++L
Sbjct: 388 SNRLALYNSRFLNLCSEMDGRVRPLVYTLRCWAQHNGLSGGGP--LLNNYALTLLVIYFL 445
Query: 347 QS--VKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLF 404
Q+ VLP + L A + ++ DG +C+F +D ++L+ P + + L++LL
Sbjct: 446 QTRDPPVLPTVAQLTQRAG-EGEQVEVDGWDCSFPKDASRLE-----PSTNVEPLSSLLA 499
Query: 405 GFFEFYSQYDFNNQGISLYLGSPIPKPEH-----------GALYINNPLERGLNVSKNVS 453
FF S D + +SL G P+ E G + + +P + NV+ NV+
Sbjct: 500 QFFSCVSCLDLSGSLLSLREGRPLMVAEGLPSDLWEGLRLGPMNLQDPFDLSHNVAANVT 559
Query: 454 FEELERLK 461
+RL+
Sbjct: 560 GRVAKRLQ 567
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 60 FVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTH 119
F IVEM D +L++ H + VR R K + +S ++ +H
Sbjct: 94 FAIVEMGDISAREAVLSQPKHSLGGHGLRVRP-----REQKEFQSPASKSPKG-VDSSSH 147
Query: 120 NVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCA 179
+ + LA + QM L + ++++ +LR LV ++ + FP C
Sbjct: 148 QLV--------QALAEAADVGAQMVKLVELRELSEAERQLRNLVVALMQEVFTEFFPGCV 199
Query: 180 IFPFGSSVNNFGKLGCDLDLVLQL 203
+ PFGS+VN+F GCDLDL L +
Sbjct: 200 VHPFGSTVNSFDVHGCDLDLFLDM 223
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus
tropicalis GN=tut1 PE=2 SV=1
Length = 843
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 189/419 (45%), Gaps = 64/419 (15%)
Query: 123 PPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFP 182
PP + + + L +C + QQ+ L ++ + + LR L+ ++ + FP C + P
Sbjct: 153 PPDPEALSKELLNCADVEQQIKKLVSLCSPSHHESHLRELLLSLLQETFTEFFPGCQLLP 212
Query: 183 FGSSVNNFGKLGC--------------DLDLVLQLDLQSQGDN---------DQCRLMFH 219
FGSSVN F GC +++ + ++Q++ ++ D
Sbjct: 213 FGSSVNGFEISGCDLDLYLDLGDDEAENVEGKAEKEIQNREESSTDMEVSMEDPETERKE 272
Query: 220 CKSSLGSERSQ---------TLRHL--ETVGDLLQLFLPGCSQLFLPGCSQVKRILGARV 268
+ +G+ ++ +L+ L E + +++ L C +PG V+ + AR
Sbjct: 273 EEMEIGNSKNDEDEDVTPGLSLKGLSSEEILEVVGKVLRHC----VPGVHGVQSVPTARR 328
Query: 269 PIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLT-NP 327
P+I + H S L D+++ N AL + L L ++D RV LV+T++ WA+ L NP
Sbjct: 329 PVIHFQHKTSGLRGDVTLNNRLALRNSSFLRLCSDLDARVPQLVYTVRYWARVNQLAGNP 388
Query: 328 -TPGRWITNFSLTLLVLFYLQSVK--VLPPLKLLIDEASLKDRRISEDGVNCTFVRDITK 384
G + N++LTLLV F+LQ+ VLP L L +E + + ++ DG +C+F D +
Sbjct: 389 FGGGPLLNNYALTLLVFFFLQTRNPPVLPTLVHLREETANEVPQVI-DGWDCSFPSDPAQ 447
Query: 385 LQFHPSIPEQSTDSLTTLLFGFFEFYSQYDF--------NNQGISLYLGSPIPKPEH--- 433
++ + SL++LL FF FY+ D N I L SP P
Sbjct: 448 VK-----ESGNQQSLSSLLSEFFSFYASLDLHLLILCPCNGLTIPLPFSSPPPAWSEGFR 502
Query: 434 -GALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGL 491
G L I +P E NV NVS R + A+ + T N N H+ S WG+
Sbjct: 503 LGPLNIQDPFELSHNVCGNVSSRAARRF-ISHCAAAARICRTPNYN---LHSTSHPWGI 557
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1
Length = 484
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 40/302 (13%)
Query: 137 NTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCD 196
+ ++QQ+ L + + + + L Q++ + LFP +F GSS+N FG D
Sbjct: 154 DKLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGARSSD 213
Query: 197 LDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPG 256
DL L + + C F + TL H C++L G
Sbjct: 214 GDLCLVVK------EEPC--FFQVNQKTEARHILTLVHKHF-----------CTRL--SG 252
Query: 257 CSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIK 316
+ +++ A+VPI+K+ +S +E DL++ N + LL + ++ RVRPLV IK
Sbjct: 253 YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIK 312
Query: 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEA---SLKDRRISE 371
KWA ++ + + G ++++SL L+VL YLQ++ +LP L+ + E+ S++ +
Sbjct: 313 KWASHHDINDASRGT-LSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSTSVQLHLVHH 371
Query: 372 DGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPK 430
N P ++ SL LL GF ++Y+ ++D+N Q IS+ IP+
Sbjct: 372 APCNV------------PPYLSKNESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPR 419
Query: 431 PE 432
P+
Sbjct: 420 PD 421
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 40/302 (13%)
Query: 137 NTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCD 196
+ ++QQ+ L + + + + L Q++ + LFP +F GSS+N FG D
Sbjct: 154 DKLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGARSSD 213
Query: 197 LDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPG 256
DL L + + C F + TL H C++L G
Sbjct: 214 GDLCLVVK------EEPC--FFQVNQKTEARHILTLVHKHF-----------CTRL--SG 252
Query: 257 CSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIK 316
+ +++ A+VPI+K+ +S +E DL++ N + LL + ++ RVRPLV IK
Sbjct: 253 YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIK 312
Query: 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEA---SLKDRRISE 371
KWA + + + G ++++SL L+VL YLQ++ +LP L+ + E+ S++ +
Sbjct: 313 KWASHHEINDASRGT-LSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSTSVQLHLVHH 371
Query: 372 DGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPK 430
N P ++ SL LL GF ++Y+ ++D+N Q IS+ IP+
Sbjct: 372 APCNV------------PPYLSKNESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPR 419
Query: 431 PE 432
P+
Sbjct: 420 PD 421
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 145/302 (48%), Gaps = 40/302 (13%)
Query: 137 NTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCD 196
+ ++QQ+ L + + + + L Q++ + LFP +F GSS+N FG D
Sbjct: 154 DKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSD 213
Query: 197 LDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPG 256
DL L + + C F + TL H C++L G
Sbjct: 214 GDLCLVVK------EEPC--FFQVNQKTEARHILTLVHKHF-----------CTRL--SG 252
Query: 257 CSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIK 316
+ +++ A+VPI+K+ +S +E DL++ N+ + LL + ++ RVRPLV IK
Sbjct: 253 YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
Query: 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEA---SLKDRRISE 371
KWA + + + G ++++SL L+VL YLQ++ +LP L+ + E+ +++ + +
Sbjct: 313 KWASHHQINDASRGT-LSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSPAIQLHLVHQ 371
Query: 372 DGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPK 430
N P ++ +L LL GF ++Y+ ++D+N+Q IS+ IP+
Sbjct: 372 APCNV------------PPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPR 419
Query: 431 PE 432
P+
Sbjct: 420 PD 421
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 146/302 (48%), Gaps = 40/302 (13%)
Query: 137 NTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCD 196
+ ++QQ+ L + + + + L +++ + LFP +F GSS+N FG D
Sbjct: 154 DKLSQQILELFEACQQQVSDLKKKELCRTELQREIQLLFPQSRLFLVGSSLNGFGTRSSD 213
Query: 197 LDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPG 256
DL L + + C F + TL H C++L G
Sbjct: 214 GDLCLVVK------EEPC--FFQVNQKTEARHILTLVHKHF-----------CTRL--SG 252
Query: 257 CSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIK 316
+ +++ A+VPI+K+ +S +E DL++ N+ + LL + ++ RVRPLV IK
Sbjct: 253 YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
Query: 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEA---SLKDRRISE 371
KWA ++ + + G ++++SL L+VL YLQ++ +LP ++ + E+ S++ + +
Sbjct: 313 KWASHHDINDASRGT-LSSYSLVLMVLHYLQTLPEPILPSIQKIYPESFSPSIQLHLVHQ 371
Query: 372 DGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPK 430
N P ++ +L LL GF ++Y+ ++D+N+Q IS+ IP+
Sbjct: 372 APCNV------------PPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPR 419
Query: 431 PE 432
P+
Sbjct: 420 PD 421
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster
GN=Gld2 PE=1 SV=3
Length = 1364
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 42/260 (16%)
Query: 175 FPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRH 234
+P ++ GSS++ FG D+D+ M C + R + + H
Sbjct: 972 YPRYGLYLVGSSISYFGSKCSDMDIC----------------MLACTNPNIDSRMEAVYH 1015
Query: 235 LETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYM 294
L + +LL G + +F Q ++ ARVPI+++ +E D++ N +
Sbjct: 1016 LHVMKELL-----GRTNMF-----QDFNLIEARVPILRFTDRCHKVEVDINFNNSVGIRN 1065
Query: 295 AELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQ---SVKV 351
LLY + ++DWRVRP+ T+K+WA+ N+ N I+++SL L+V+ +LQ S V
Sbjct: 1066 THLLYCYSQLDWRVRPMALTVKQWAQYHNINN-AKNMTISSYSLMLMVIHFLQVGASPPV 1124
Query: 352 LPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDS--LTTLLFGFFEF 409
LP L L E K + + + ++ P QS +S L LL F +
Sbjct: 1125 LPCLHNLYPE---KFGLLQPNDFGYVDMNEVMA-------PYQSDNSQTLGDLLLSFLHY 1174
Query: 410 YSQYDFNNQGISLYLGSPIP 429
YS +D+ IS+ +G +P
Sbjct: 1175 YSVFDYGKYAISIRVGGVLP 1194
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 34/244 (13%)
Query: 183 FGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLL 242
FGSS N FG DLD+ + L+ G E ++ L E + +L
Sbjct: 1013 FGSSKNGFGFRDSDLDICMTLE--------------------GHENAEKLNCKEIIENLA 1052
Query: 243 QLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFG 302
++ PG + I A+VPI+K+ H S LE D+S+ N A + +L +
Sbjct: 1053 KILK------RHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYA 1106
Query: 303 EIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVK--VLPPLKLLID 360
ID RV+ L +T+K +AK ++ + + G +++++ L+VL++LQ K V+P L+ + D
Sbjct: 1107 AIDPRVQYLGYTMKVFAKRCDIGDASRGS-LSSYAYILMVLYFLQQRKPPVIPVLQEIFD 1165
Query: 361 EASLKDRRISEDGVNCTFVRDITKLQFH-PSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQ 418
+ R + DG N F +L+ PS+ ++T+SL L G FY+ ++DF
Sbjct: 1166 GKQIPQRMV--DGWNAFFFDKTEELKKRLPSL-GKNTESLGELWLGLLRFYTEEFDFKEY 1222
Query: 419 GISL 422
IS+
Sbjct: 1223 VISI 1226
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 37/223 (16%)
Query: 133 LASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGK 192
LA+ + ++ IT D + R+R + ++ + P C++ +GSS+ F
Sbjct: 372 LAALSVAVVELAKEQGIT---DDDLRIRQDIVEEMSKVIMTFLPECSLRLYGSSLTKFAL 428
Query: 193 LGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQL 252
D+++ ++ + + H + + +L + S L
Sbjct: 429 KSSDVNIDIKFPPK-------------------------MNHPDLLIQVLGILKK--SAL 461
Query: 253 FLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLV 312
++ V+ A+VP++ SAL C +S N A +LL G+++ PLV
Sbjct: 462 YI----DVESDFHAKVPVVVCKDRKSALLCRVSAGNDMACLTTDLLAALGKVEPVFTPLV 517
Query: 313 FTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPL 355
+ WAK + + T G I ++ L+V+F+LQ K PPL
Sbjct: 518 LAFRYWAKLCYIDSQTDG-GIPSYCFALMVMFFLQQRK--PPL 557
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 34/244 (13%)
Query: 183 FGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLL 242
FGSS N FG DLD+ + L+ G E ++ L E + +L
Sbjct: 996 FGSSKNGFGFRDSDLDICMTLE--------------------GHENAEKLNCKEIIENLA 1035
Query: 243 QLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFG 302
++ PG + I A+VPI+K+ H S LE D+S+ N A + +L +
Sbjct: 1036 KILK------RHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYA 1089
Query: 303 EIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVK--VLPPLKLLID 360
ID RV+ L +T+K +AK ++ + + G +++++ L+VL++LQ K V+P L+ + D
Sbjct: 1090 AIDPRVQYLGYTMKVFAKRCDIGDASRGS-LSSYAYILMVLYFLQQRKPPVIPVLQEIFD 1148
Query: 361 EASLKDRRISEDGVNCTFVRDITKLQFH-PSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQ 418
+ R + DG N F +L+ PS+ ++T+SL L G FY+ ++DF
Sbjct: 1149 GKQIPQRMV--DGWNAFFFDKTEELKKRLPSL-GKNTESLGELWLGLLRFYTEEFDFKEY 1205
Query: 419 GISL 422
IS+
Sbjct: 1206 VISI 1209
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 41/233 (17%)
Query: 123 PPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFP 182
PP+ H LA+ + ++ H IT D + R+R + ++ ++ P C++
Sbjct: 346 PPSPAH----LAALSVAVIELAKEHGIT---DDDLRVRQEIVEEMSKVITTFLPECSLRL 398
Query: 183 FGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLL 242
+GSS+ F D+++ ++ + + H + + +L
Sbjct: 399 YGSSLTRFALKSSDVNIDIKFPPK-------------------------MNHPDLLIKVL 433
Query: 243 QLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFG 302
+ L++ V+ A+VP++ S L C +S N A +LL G
Sbjct: 434 GILKKNV--LYV----DVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALG 487
Query: 303 EIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPL 355
+I+ PLV + WAK + + T G I ++ L+V+F+LQ K PPL
Sbjct: 488 KIEPVFIPLVLAFRYWAKLCYIDSQTDG-GIPSYCFALMVMFFLQQRK--PPL 537
>sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2
PE=1 SV=2
Length = 1113
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 51/326 (15%)
Query: 123 PPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFP 182
PPT + E L+ + +++++ HN D + + + + A+S +FPL ++
Sbjct: 534 PPTS-LLSEPLSRMDVLSEKIWDYHNKVSQTDEMLQRKLHLRDMLYTAISPVFPLSGLYV 592
Query: 183 FGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLL 242
GSS+N FG D+DL L + T + L+ D +
Sbjct: 593 VGSSLNGFGNNSSDMDLCLMI---------------------------TNKDLDQKNDAV 625
Query: 243 QLFLPGCSQLFLPGCSQVKRILGARVPIIKYN--HDMSALECDLSMTNLTALYMAELLYL 300
+ S L + ++++ A+VPI++ N + DL+ N A+ LL
Sbjct: 626 VVLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAIRNTHLLCY 685
Query: 301 FGEIDWRVRPLVFTIKKWA--KDINLTNPTPGRWITNFSLTLLVLFYLQ--SVKVLPPLK 356
+ DWRVRPLV +K+WA K IN N + T++SL L+V+ +LQ KVLP L
Sbjct: 686 YSSYDWRVRPLVSVVKEWAKRKGINDANKS---SFTSYSLVLMVIHFLQCGPTKVLPNL- 741
Query: 357 LLIDEASLKDR---RISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-Q 412
+ S +R ++ +N T + S+ E++T L LL GF ++Y+ +
Sbjct: 742 ----QQSYPNRFSNKVDVRTLNVTMALEEVADDIDQSLSEKTT--LGELLIGFLDYYANE 795
Query: 413 YDFNNQGISLYLGSPIPKPEHGALYI 438
++++ IS+ G + E AL +
Sbjct: 796 FNYDRDAISIRQGRRV---ERAALAV 818
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 118/249 (47%), Gaps = 26/249 (10%)
Query: 184 GSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQ 243
GS++ FG D+D+ L L QG + +R++ L L +L+
Sbjct: 1017 GSTITGFGTDSSDIDMCL---LPEQGVHPHQHQYHQHHHFHNEKRTEALIILTLFNAVLK 1073
Query: 244 LFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGE 303
+++F Q ++ ARVPI+++ + +E DL+ N + LL L+ +
Sbjct: 1074 D-----TEVF-----QDFNLIEARVPILRFKDISNGIEVDLNFNNCVGIKNTYLLQLYAQ 1123
Query: 304 IDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV---KVLPPLKLLID 360
+DWR RPLV +K WA+ ++ N I+++SL L+VL YLQ VLP L L
Sbjct: 1124 MDWRTRPLVVIVKLWAQYHDI-NDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYP 1182
Query: 361 EASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGI 420
E K + +D ++ + I Q +T +L L GFF++YS +DF N I
Sbjct: 1183 E---KFQLGQQDCLDLDLIEPIEPYQ------ALNTQTLGEHLLGFFKYYSTFDFRNFAI 1233
Query: 421 SLYLGSPIP 429
S+ G +P
Sbjct: 1234 SIRTGGVLP 1242
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 130/271 (47%), Gaps = 32/271 (11%)
Query: 155 INTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQC 214
I + R + +E + FP + FGSS N FG DLD+ + ++
Sbjct: 1017 IEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTIN---------- 1066
Query: 215 RLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYN 274
G E ++ L + T+ +L ++ G + I A+VPI+K+
Sbjct: 1067 ----------GLETAEGLDCVRTIEELARVLRKHS------GLRNILPITTAKVPIVKFF 1110
Query: 275 HDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWIT 334
H S LE D+S+ N AL+ LL + ID RV+ L +T+K + K ++ + + G ++
Sbjct: 1111 HLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGS-LS 1169
Query: 335 NFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRR--ISEDGVNCTFVRDITKLQFHPSIP 392
+++ TL+VL++LQ PP+ ++ E +++ I DG N F I +L + S
Sbjct: 1170 SYAYTLMVLYFLQQRN--PPVIPVLQEIYKGEKKPEIFVDGWNIYFFDQIDELPTYWSEC 1227
Query: 393 EQSTDSLTTLLFGFFEFYS-QYDFNNQGISL 422
++T+S+ L G FY+ ++DF IS+
Sbjct: 1228 GKNTESVGQLWLGLLRFYTEEFDFKEHVISI 1258
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 266 ARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLT 325
ARVP++ S L C +S N A + L G+++ ++ PLV + WAK ++
Sbjct: 391 ARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTALGKLEPKLVPLVIAFRYWAKLCSID 450
Query: 326 NPTPGRWITNFSLTLLVLFYLQSVK 350
P G + + L+ +F+LQ K
Sbjct: 451 RPEEG-GLPPYVFALMAIFFLQQRK 474
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 141/308 (45%), Gaps = 40/308 (12%)
Query: 127 DHVRECL-ASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGS 185
DH+ L + + +++Q+ L + + + + + +++ + +FP ++ GS
Sbjct: 170 DHIDTTLPVAKDKLSKQILDLFQALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGS 229
Query: 186 SVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLF 245
S+N FG D DL L L + N + R H S L L ++E
Sbjct: 230 SLNGFGIRSSDADLCLVLKEEPMNQNTEAR---HILSLLHKHFYTRLSYIER-------- 278
Query: 246 LPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEID 305
+ + A+VPI+K+ +S E DL++ N+ + LL + +D
Sbjct: 279 ---------------PQFIRAKVPIVKFRDKVSGAEFDLNVNNVVGIRNTFLLRTYAYLD 323
Query: 306 WRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEAS 363
RVRPLV IKKWA + + + G ++++++ L+VL YLQ++ +LP L+ E
Sbjct: 324 KRVRPLVLVIKKWANHHGINDASRGT-LSSYTIVLMVLHYLQTLPEPILPSLQKKYPECF 382
Query: 364 LKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISL 422
DR + V+ R+I P ++ L LL GF ++++ ++D++ ISL
Sbjct: 383 --DRTMQLHLVHQA-PRNI------PQFLSKNETPLGDLLLGFLKYFAVEFDWSKDIISL 433
Query: 423 YLGSPIPK 430
+P+
Sbjct: 434 REAKALPR 441
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 130/274 (47%), Gaps = 38/274 (13%)
Query: 155 INTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQC 214
+ + R + +E + FP + FGSS N FG DLD+ + ++
Sbjct: 1013 VEDQAREHIRQNLESFIKQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTIN---------- 1062
Query: 215 RLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYN 274
G E ++ L + T+ +L ++ G + I A+VPI+K+
Sbjct: 1063 ----------GHETAEGLDCVRTIEELARVLRKHS------GLRNILPITTAKVPIVKFF 1106
Query: 275 HDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWIT 334
H S LE D+S+ N AL+ LL + ID RV+ L +T+K + K ++ + + G ++
Sbjct: 1107 HLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGS-LS 1165
Query: 335 NFSLTLLVLFYLQ--SVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSI- 391
+++ TL+VL++LQ S V+P L+ + K I DG N F I +L P+
Sbjct: 1166 SYAYTLMVLYFLQQRSPPVIPVLQEIY--KGEKKPEILVDGWNIYFFDQINEL---PTCW 1220
Query: 392 PE--QSTDSLTTLLFGFFEFYS-QYDFNNQGISL 422
PE ++T+ + L G FY+ ++DF IS+
Sbjct: 1221 PEYGKNTEPVGQLWLGLLRFYTEEFDFKEHVISI 1254
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 266 ARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLT 325
ARVP++ S L C +S N A + L G+++ R+ PLV + WAK ++
Sbjct: 391 ARVPVVVCRDKQSGLLCKVSAGNENAWLTTKHLTALGKLEPRLVPLVIAFRYWAKLCSID 450
Query: 326 NPTPGRWITNFSLTLLVLFYLQSVK 350
P G + + L+ +F+LQ K
Sbjct: 451 RPEEG-GLPPYVFALMAVFFLQQRK 474
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 49/278 (17%)
Query: 180 IFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVG 239
+F FGS+ NN D+D+ C + GS ++L +
Sbjct: 90 LFVFGSTENNLAIQQSDVDV--------------------CIITNGS------KYLNSTC 123
Query: 240 DLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLY 299
L QL L+ G Q+ + ARVPI+K + CDL++ N A ++L
Sbjct: 124 QLAQL-------LYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKINTKMLR 176
Query: 300 LFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLI 359
LF ID RVRPL IK WAK L + IT+++++ +++ +LQ+ + P L ++
Sbjct: 177 LFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQT-RNPPILPAML 235
Query: 360 DEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQ 418
D S D ++ FV DI + ++ + SL LL FF +Y +++ +
Sbjct: 236 DLMSNDDNKM--------FVDDIVGFKEKATL---NKTSLGRLLIDFFYYYGFSFNYLDS 284
Query: 419 GISLYLGSPIPKPEHG-ALYINNPL--ERGLNVSKNVS 453
+S+ G+ + K E G A+ +NN L E N ++N++
Sbjct: 285 VVSVRSGTVLNKQEKGWAMEVNNSLCVEEPFNTARNLA 322
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 150/357 (42%), Gaps = 69/357 (19%)
Query: 146 LHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDL 205
++N K++D + + + L L + P + FGS + D+DL + +D
Sbjct: 51 VYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDS 110
Query: 206 QSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILG 265
+ Q +D L F+ +L G FL
Sbjct: 111 RVQ--SDTIALQFYE----------------------ELIAEGFEGKFLQR--------- 137
Query: 266 ARVPIIKYNHDM-----SALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAK 320
AR+PIIK D ++ +CD+ N A++ LL + ++D R++P+V +K WAK
Sbjct: 138 ARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAK 197
Query: 321 DINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVR 380
+ +P G ++++ L+VL+YL V + PP+ + + LK +I DG + F
Sbjct: 198 RKQINSPYFGT-LSSYGYVLMVLYYLIHV-IKPPVFPNLLLSPLKQEKIV-DGFDVGFD- 253
Query: 381 DITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSP---IPKPEHG--- 434
KL+ P P Q+ SL +LL GFF FY+ Y F + + P + K E G
Sbjct: 254 --DKLEDIP--PSQNYSSLGSLLHGFFRFYA-YKFEPREKVVTFRRPDGYLTKQEKGWTS 308
Query: 435 ----------------ALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTA 475
L I +P E NV + VS L R++ E AS L S +
Sbjct: 309 ATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 365
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 145/310 (46%), Gaps = 44/310 (14%)
Query: 127 DHVRECLASC-NTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGS 185
DH+ L + ++QQ+ L + + + + + +++ + +FP ++ GS
Sbjct: 170 DHIDTTLPVAEDKLSQQILDLFQALQQQVCDIKKKDICRAELQREIQQIFPQSRLYLVGS 229
Query: 186 SVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLF 245
S+N FG D DL L L + + +E +Q L L
Sbjct: 230 SLNGFGTRISDADLCLVLKEEPMNQH--------------TEATQILGLLH--------- 266
Query: 246 LPGCSQLFLPGCSQVKRI--LGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGE 303
+LF S ++R+ + A+VPI+K+ +S E DL++ N+ + LL +
Sbjct: 267 -----KLFYTRLSYIERLQFIRAKVPIVKFRDKVSGAEFDLNVNNVVGIRNTFLLRTYAY 321
Query: 304 IDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDE 361
++ RVRPLV IKKWA + + + G +++++L L+VL YLQ++ +LP L+ E
Sbjct: 322 LESRVRPLVLVIKKWANHHGINDASRGT-LSSYTLVLMVLHYLQTLPEPILPSLQKKYPE 380
Query: 362 ASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGI 420
D + + V+ R+I P ++ L LL GF ++++ ++D++ I
Sbjct: 381 CF--DLSMQLNLVHHA-PRNI------PPYLSKNETPLGDLLLGFLKYFAVEFDWSKDII 431
Query: 421 SLYLGSPIPK 430
S+ G +P+
Sbjct: 432 SVREGKALPR 441
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 58/311 (18%)
Query: 171 LSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQ 230
+ +FP +F GSS+N FG D DL L ++ +G + H K ++
Sbjct: 194 IQKIFPCAKVFLGGSSLNGFGSRSSDADLCLVIE---EGPVN------HRKDAV------ 238
Query: 231 TLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLT 290
V L++ L S + P +++ A+VPI+K+ +S +E DL+ N
Sbjct: 239 ------YVLSLVRKLLYKLSYIEKP------QLIRAKVPIVKFRDRISGVEFDLNFNNTV 286
Query: 291 ALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV- 349
+ LL + ++ RVRPLV IKKWA + + + G +++++L L+VL YLQ++
Sbjct: 287 GIRNTFLLRTYAFVEKRVRPLVLVIKKWANHHCINDASRGT-LSSYTLVLMVLHYLQTLP 345
Query: 350 -KVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPS-IP---EQSTDSLTTLLF 404
V+P L+ D + D ++ DI + PS IP ++ SL L
Sbjct: 346 EPVIPCLQR--DYPTCFDPKM-----------DIHLVPSGPSDIPAFVSRNQSSLGDLFL 392
Query: 405 GFFEFYSQ-YDFNNQGISLYLGSPIPKP-----EHGALYINNPLERGLNVSKNVSFEELE 458
GF +Y+ + ++ Q IS+ + +PK + + + P R N ++ V E
Sbjct: 393 GFLRYYATVFKWDKQVISVRMARTLPKSNCKEWKDKFICVEEPFNR-TNTARAVH----E 447
Query: 459 RLKVEVRNASW 469
R+K E A++
Sbjct: 448 RMKFEAIKAAF 458
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 21/201 (10%)
Query: 242 LQLFLPGCSQLFLPGCSQVKRIL-----------GARVPIIKYNHDMSALECDLSMTNLT 290
L L + + LP +VK I+ GAR+PIIK+ + + CDLS NL
Sbjct: 941 LDLVIYSSKEALLPYYDRVKSIIKNEFSNVMPIRGARIPIIKFTGQYN-IHCDLSFDNLL 999
Query: 291 ALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV- 349
++ ++L+ + ID RV+ L+ +K WA + L + T + ++++ ++V+FYLQ +
Sbjct: 1000 PIHNSDLILNYSLIDERVKTLLMLVKYWASN-RLIDKTHHAFPSSYTWCIMVIFYLQQIP 1058
Query: 350 -KVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFE 408
+LP L+ L + S R VNC F RD + + ++ ++ LL GFF
Sbjct: 1059 EPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDT---ECYRGSMQKGRKNIALLLRGFFC 1115
Query: 409 FY---SQYDFNNQGISLYLGS 426
+Y +QY F+ + + + S
Sbjct: 1116 YYGLTTQYSFDWEAYMIDISS 1136
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 138/308 (44%), Gaps = 40/308 (12%)
Query: 127 DHVRECL-ASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGS 185
DHV L + + +++Q+ L + + + + + +++ + +FP ++ GS
Sbjct: 189 DHVDTTLPVAKDKLSKQILELFQALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGS 248
Query: 186 SVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLF 245
S+N FG D DL L L + + + R H S L L ++E
Sbjct: 249 SLNGFGTRSSDADLCLVLKDEPMNQHTEAR---HILSLLHKHFYTRLSYIER-------- 297
Query: 246 LPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEID 305
+ + A+VPI+K+ +S E DL++ N+ + LL + I+
Sbjct: 298 ---------------PQFIKAKVPIVKFRDKVSGAEFDLNVNNVVGIRNTFLLRTYAYIE 342
Query: 306 WRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEAS 363
RVRPLV IK WA L + + G +++++L L+ L YLQ++ ++P L+ E
Sbjct: 343 NRVRPLVLVIKMWANYHGLNDASRGT-LSSYTLVLMALHYLQTLPEPIIPSLQKKYPECF 401
Query: 364 LKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISL 422
D + V+ R+I P ++ L LL GF ++++ ++D++ IS+
Sbjct: 402 --DSTMQLHLVHHA-PRNI------PKYLSKNETPLGDLLLGFLKYFAIEFDWSKDIISV 452
Query: 423 YLGSPIPK 430
+P+
Sbjct: 453 REAKALPR 460
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid13 PE=1 SV=1
Length = 578
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 144/357 (40%), Gaps = 51/357 (14%)
Query: 139 ITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFP--FGSSVNNFGKLGCD 196
I+ Q+ L++ +ND R+ ++E L FP I FGS+ + D
Sbjct: 51 ISSQLYELYDSIILNDSGLERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSLLASNASD 110
Query: 197 LDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPG 256
+DL + D QC C+ S R+ G
Sbjct: 111 IDLCIITDPP------QCAPT-TCEVSAAFARN--------------------------G 137
Query: 257 CSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIK 316
+V I A+VPI+K L CD ++ + L+ + D RVRPL+ IK
Sbjct: 138 LKKVVCISTAKVPIVKVWDSELQLSCDCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIK 197
Query: 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQ--SVKVLPPLKLLIDEASLKDRRISEDGV 374
WAK L + G +T+++++ +V+ +LQ +LP L++L L+D DG+
Sbjct: 198 YWAKRRCLNDAAEGGTLTSYTISCMVINFLQKRDPPILPSLQML---PHLQDSSTMTDGL 254
Query: 375 NCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQ-YDFNNQGISLYLGSPIPKPEH 433
+ +F D + +++ +SL L FF F+ +D+ + +S+ G+ + K
Sbjct: 255 DVSFFDDPDLVH---GFGDKNEESLGILFVEFFRFFGYLFDYEHFVLSIRHGTFLSKRAK 311
Query: 434 G-------ALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSH 483
G L + P N++ ++ +++E R L N ++ S
Sbjct: 312 GWQFQLNNFLCVEEPFHTSRNLANTADEITMKGIQLEFRRVFRLLAYNCNVDDACSQ 368
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 41/214 (19%)
Query: 265 GARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINL 324
GA VPI+K + L D+S + + A + E + PLV +K++ NL
Sbjct: 178 GAFVPIVKMVDRDTRLSIDISFNTVQGVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNL 237
Query: 325 TNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITK 384
N T ++++ L LL++ + Q + +++ R I + GVN
Sbjct: 238 -NQTFTGGLSSYGLVLLLVNFFQLYAL-----------NMRSRTIYDRGVN--------- 276
Query: 385 LQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPKPEHGALYINNPLE 443
L LL F E YS +++F GIS IPK GA Y + +
Sbjct: 277 --------------LGHLLLRFLELYSLEFNFEEMGISPGQCCYIPKSASGARYGHKQAQ 322
Query: 444 RGLNVSKNVSFEELERLKVEVRNASWTLESTANS 477
G N++ E+ +V +++ S AN+
Sbjct: 323 PG-----NLALEDPLLTANDVGRSTYNFSSIANA 351
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 64/174 (36%), Gaps = 46/174 (26%)
Query: 263 ILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDI 322
I+ RVPIIK+ S L D+S L A+L+ + +R LV IK++
Sbjct: 270 IVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREWLRDSPGLRELVLIIKQFLHSR 329
Query: 323 NLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDI 382
L N G + F++ LV +
Sbjct: 330 RLNNVHTG-GLGGFTVICLVYSF------------------------------------- 351
Query: 383 TKLQFHPSIPEQST---DSLTTLLFGFFEFYSQ-YDFNNQGISLYLG--SPIPK 430
L HP I D+L LL FFE Y + + +++ IS+ G S IPK
Sbjct: 352 --LNMHPRIKSNDIDVLDNLGVLLIDFFELYGKNFGYDDVAISISDGYASYIPK 403
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 257 CSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIK 316
++V+ + ARVPIIK+ S + D+S + A+L+ + + +R LV +K
Sbjct: 267 ATEVEVVAKARVPIIKFVEPHSGIHIDVSFERTNGIEAAKLIREWLDDTPGLRELVLIVK 326
Query: 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQ 347
++ L N G + FS+ LV +L
Sbjct: 327 QFLHARRLNNVHTG-GLGGFSIICLVFSFLH 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,992,629
Number of Sequences: 539616
Number of extensions: 8136642
Number of successful extensions: 19621
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 19519
Number of HSP's gapped (non-prelim): 57
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)