Query psy10458
Match_columns 563
No_of_seqs 272 out of 1345
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:43:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pq1_A Poly(A) RNA polymerase; 100.0 1.7E-85 5.8E-90 705.4 35.1 406 18-500 33-462 (464)
2 4e8f_A Poly(A) RNA polymerase 100.0 4.8E-59 1.6E-63 497.6 31.6 315 134-503 39-382 (405)
3 4fh3_A Poly(A) RNA polymerase 100.0 3.9E-57 1.3E-61 475.0 31.7 294 138-475 15-337 (349)
4 3hj4_A Minor editosome-associa 100.0 8.5E-57 2.9E-61 471.1 21.8 309 137-477 5-370 (384)
5 3nyb_A Poly(A) RNA polymerase 100.0 4.4E-53 1.5E-57 439.8 22.6 268 138-475 20-300 (323)
6 2ikf_A RNA uridylyl transferas 100.0 1.1E-52 3.7E-57 442.1 24.1 295 140-471 29-348 (353)
7 2b4v_A RNA editing complex pro 100.0 6.4E-51 2.2E-55 440.0 25.6 296 123-477 11-443 (468)
8 1q79_A Poly(A) polymerase alph 100.0 3.4E-42 1.2E-46 375.4 26.4 282 123-501 30-368 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 1.7E-41 5.8E-46 371.2 28.9 282 123-501 17-355 (530)
10 1r89_A TRNA nucleotidyltransfe 99.5 2.3E-13 7.9E-18 144.9 19.4 232 139-469 3-247 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.3 3.6E-11 1.2E-15 125.8 19.4 276 141-491 9-345 (349)
12 4at7_A Interleukin enhancer-bi 98.4 2.6E-05 8.8E-10 80.5 22.4 245 138-474 26-298 (364)
13 1ylq_A Putative nucleotidyltra 97.4 9.2E-05 3.2E-09 62.6 4.0 43 163-205 3-46 (96)
14 1no5_A Hypothetical protein HI 97.4 0.00018 6E-09 62.8 5.3 41 165-205 15-55 (114)
15 4at7_B NF90, interleukin enhan 97.1 0.018 6.3E-07 59.8 17.9 102 307-474 227-330 (383)
16 2rff_A Putative nucleotidyltra 96.6 0.0015 5.1E-08 56.8 4.0 44 162-205 14-61 (111)
17 1wot_A Putative minimal nucleo 96.6 0.0013 4.5E-08 55.7 3.6 39 166-205 15-53 (98)
18 2wbr_A GW182, gawky, LD47780P; 95.8 0.0035 1.2E-07 52.3 2.2 50 38-90 24-76 (89)
19 2e5g_A U6 snRNA-specific termi 95.6 0.0078 2.7E-07 49.7 3.7 46 43-90 32-77 (94)
20 1x4g_A Nucleolysin TIAR; struc 95.5 0.024 8.1E-07 48.0 6.4 70 17-90 5-94 (109)
21 4ebj_A Aminoglycoside nucleoti 95.0 0.016 5.4E-07 57.0 4.0 41 166-206 28-69 (272)
22 1s79_A Lupus LA protein; RRM, 94.8 0.028 9.5E-07 47.7 4.6 50 43-92 35-86 (103)
23 1kny_A Kntase, kanamycin nucle 94.3 0.021 7.3E-07 56.5 3.1 44 163-206 15-60 (253)
24 2ytc_A PRE-mRNA-splicing facto 94.1 0.048 1.6E-06 43.6 4.3 44 43-89 36-81 (85)
25 1sjq_A Polypyrimidine tract-bi 94.0 0.026 8.8E-07 48.5 2.7 49 39-90 34-87 (105)
26 3r27_A HnRNP L, heterogeneous 93.8 0.03 1E-06 47.6 2.7 37 39-78 39-77 (100)
27 1wex_A Hypothetical protein (r 93.8 0.084 2.9E-06 44.8 5.5 45 43-90 39-86 (104)
28 2cq1_A PTB-like protein L; RRM 93.6 0.036 1.2E-06 46.9 3.0 32 43-77 39-70 (101)
29 1x4f_A Matrin 3; structural ge 93.4 0.05 1.7E-06 47.2 3.5 44 43-89 50-96 (112)
30 2d9o_A DNAJ (HSP40) homolog, s 93.2 0.062 2.1E-06 45.5 3.7 39 37-78 33-74 (100)
31 2cpj_A Non-POU domain-containi 93.2 0.094 3.2E-06 43.3 4.8 45 43-90 39-84 (99)
32 2ad9_A Polypyrimidine tract-bi 93.1 0.047 1.6E-06 47.9 2.9 45 43-90 55-102 (119)
33 3ucg_A Polyadenylate-binding p 93.1 0.089 3E-06 42.3 4.4 48 43-90 30-80 (89)
34 1x5p_A Negative elongation fac 93.1 0.047 1.6E-06 45.1 2.7 45 43-90 37-82 (97)
35 1x4d_A Matrin 3; structural ge 92.8 0.049 1.7E-06 46.3 2.5 49 38-89 33-86 (102)
36 1uaw_A Mouse-musashi-1; RNP-ty 92.8 0.099 3.4E-06 40.8 4.2 48 43-90 24-74 (77)
37 3s7r_A Heterogeneous nuclear r 92.7 0.12 4E-06 41.5 4.7 48 43-90 35-85 (87)
38 2la4_A Nuclear and cytoplasmic 92.7 0.11 3.9E-06 42.9 4.6 45 43-90 51-96 (101)
39 2hvz_A Splicing factor, argini 92.6 0.063 2.2E-06 44.5 2.9 45 43-90 24-70 (101)
40 2hzc_A Splicing factor U2AF 65 92.4 0.14 4.7E-06 41.0 4.7 43 45-90 43-85 (87)
41 2voo_A Lupus LA protein; RNA-b 92.4 0.11 3.6E-06 49.1 4.6 61 32-92 103-184 (193)
42 2krb_A Eukaryotic translation 92.3 0.1 3.5E-06 41.4 3.8 42 36-77 22-66 (81)
43 2dgs_A DAZ-associated protein 92.3 0.19 6.5E-06 41.4 5.5 48 43-90 34-84 (99)
44 2cph_A RNA binding motif prote 92.3 0.13 4.5E-06 42.9 4.5 48 43-90 39-92 (107)
45 1why_A Hypothetical protein ri 92.3 0.07 2.4E-06 44.0 2.7 45 43-90 41-88 (97)
46 1iqt_A AUF1, heterogeneous nuc 92.2 0.07 2.4E-06 41.5 2.6 48 43-90 23-73 (75)
47 2bz2_A Negative elongation fac 92.2 0.085 2.9E-06 45.9 3.4 45 43-90 61-106 (121)
48 2jwn_A Embryonic polyadenylate 92.1 0.14 4.8E-06 44.1 4.6 48 43-90 60-110 (124)
49 4f25_A Polyadenylate-binding p 91.9 0.099 3.4E-06 44.8 3.3 48 43-90 29-78 (115)
50 2mss_A Protein (musashi1); RNA 91.8 0.12 4.2E-06 40.2 3.5 48 43-90 23-73 (75)
51 2dis_A Unnamed protein product 91.7 0.11 3.6E-06 43.7 3.3 48 43-90 32-87 (109)
52 4fxv_A ELAV-like protein 1; RN 91.7 0.1 3.5E-06 43.6 3.2 48 43-90 43-94 (99)
53 2dnz_A Probable RNA-binding pr 91.5 0.27 9.1E-06 40.0 5.5 48 43-90 29-80 (95)
54 2cq3_A RNA-binding protein 9; 91.5 0.2 7E-06 41.5 4.9 48 43-90 39-88 (103)
55 2cqd_A RNA-binding region cont 91.5 0.18 6E-06 43.0 4.5 48 43-90 41-91 (116)
56 1p1t_A Cleavage stimulation fa 91.5 0.19 6.6E-06 41.6 4.7 48 43-90 32-83 (104)
57 1x4b_A Heterogeneous nuclear r 91.3 0.22 7.5E-06 42.3 5.0 48 43-90 51-101 (116)
58 2dgv_A HnRNP M, heterogeneous 91.3 0.34 1.1E-05 39.1 5.9 48 43-90 32-81 (92)
59 2dnq_A RNA-binding protein 4B; 91.3 0.28 9.4E-06 39.7 5.4 43 43-90 32-75 (90)
60 2fy1_A RNA-binding motif prote 91.3 0.29 9.9E-06 42.0 5.7 48 43-90 31-81 (116)
61 2dh8_A DAZ-associated protein 91.3 0.18 6.1E-06 42.0 4.2 48 43-90 40-90 (105)
62 2do4_A Squamous cell carcinoma 91.3 0.22 7.6E-06 41.0 4.8 48 43-90 41-91 (100)
63 2rs2_A Musashi-1, RNA-binding 91.2 0.15 5.3E-06 43.2 3.8 48 43-90 49-99 (109)
64 2d9p_A Polyadenylate-binding p 91.2 0.33 1.1E-05 40.2 5.8 48 43-90 39-88 (103)
65 2cqg_A TDP-43, TAR DNA-binding 91.2 0.23 7.8E-06 41.2 4.8 47 43-90 39-88 (103)
66 2cq2_A Hypothetical protein LO 91.2 0.065 2.2E-06 46.6 1.4 39 36-77 42-82 (114)
67 3bs9_A Nucleolysin TIA-1 isofo 91.1 0.27 9.3E-06 39.2 5.0 48 43-90 30-81 (87)
68 2cpf_A RNA binding motif prote 91.1 0.17 5.8E-06 41.6 3.8 48 43-90 29-83 (98)
69 2ywk_A Putative RNA-binding pr 91.1 0.16 5.5E-06 41.4 3.7 48 43-90 40-90 (95)
70 1x5s_A Cold-inducible RNA-bind 91.0 0.27 9.1E-06 40.6 5.0 48 43-90 36-87 (102)
71 3p5t_L Cleavage and polyadenyl 91.0 0.23 7.8E-06 40.3 4.5 48 43-90 25-78 (90)
72 3mdf_A Peptidyl-prolyl CIS-tra 90.9 0.2 6.8E-06 39.8 4.0 47 43-89 31-81 (85)
73 2x1f_A MRNA 3'-END-processing 90.8 0.21 7.1E-06 41.0 4.1 48 43-90 26-77 (96)
74 2e5i_A Heterogeneous nuclear r 90.7 0.14 4.7E-06 45.2 3.1 38 38-77 42-81 (124)
75 4a8x_A RNA-binding protein wit 90.7 0.25 8.7E-06 39.4 4.5 48 43-90 28-80 (88)
76 2err_A Ataxin-2-binding protei 90.6 0.2 7E-06 42.3 4.0 48 43-90 53-102 (109)
77 1whw_A Hypothetical protein ri 90.5 0.26 8.9E-06 40.5 4.5 48 43-90 32-83 (99)
78 1whx_A Hypothetical protein ri 90.5 0.19 6.4E-06 42.8 3.7 45 43-90 34-79 (111)
79 2kvi_A Nuclear polyadenylated 90.3 0.18 6E-06 41.5 3.3 47 39-90 29-78 (96)
80 1p27_B RNA-binding protein 8A; 90.3 0.49 1.7E-05 39.3 6.1 48 43-90 47-98 (106)
81 2jvo_A Nucleolar protein 3; nu 90.1 0.28 9.5E-06 41.5 4.5 43 43-90 55-98 (108)
82 1x4h_A RNA-binding protein 28; 90.1 0.28 9.4E-06 41.2 4.4 48 43-90 39-96 (111)
83 2e5j_A Methenyltetrahydrofolat 90.1 0.36 1.2E-05 39.6 5.0 45 43-90 43-89 (97)
84 2dnh_A Bruno-like 5, RNA bindi 89.9 0.27 9.3E-06 40.8 4.2 35 43-77 39-75 (105)
85 2cq0_A Eukaryotic translation 89.8 0.24 8.1E-06 41.1 3.7 48 43-90 39-90 (103)
86 1x5t_A Splicing factor 3B subu 89.7 0.27 9.2E-06 40.0 3.9 48 43-90 29-81 (96)
87 1x4a_A Splicing factor, argini 89.7 0.27 9.4E-06 41.2 4.0 48 43-90 46-94 (109)
88 2cqb_A Peptidyl-prolyl CIS-tra 89.6 0.23 7.9E-06 41.0 3.5 48 43-90 36-87 (102)
89 1x5u_A Splicing factor 3B subu 89.6 0.34 1.2E-05 40.2 4.5 48 43-90 39-90 (105)
90 2nlw_A Eukaryotic translation 89.4 0.16 5.6E-06 42.5 2.4 55 36-90 36-95 (105)
91 2cqi_A Nucleolysin TIAR; RNA r 89.3 0.39 1.3E-05 39.8 4.7 48 43-90 39-88 (103)
92 2cqc_A Arginine/serine-rich sp 89.3 0.43 1.5E-05 38.7 4.9 48 43-90 39-90 (95)
93 2dgo_A Cytotoxic granule-assoc 89.2 0.43 1.5E-05 40.3 5.0 48 43-90 39-90 (115)
94 2la6_A RNA-binding protein FUS 89.1 0.31 1.1E-05 40.1 3.9 47 43-89 37-95 (99)
95 2xnq_A Nuclear polyadenylated 89.1 0.21 7.2E-06 41.3 2.8 42 43-89 47-89 (97)
96 1x4c_A Splicing factor, argini 89.0 0.17 5.8E-06 42.6 2.3 32 43-78 39-70 (108)
97 3zzy_A Polypyrimidine tract-bi 89.0 0.24 8.2E-06 44.0 3.2 35 43-78 52-86 (130)
98 2cq4_A RNA binding motif prote 88.7 0.29 1E-05 41.4 3.6 48 43-90 49-99 (114)
99 1x4e_A RNA binding motif, sing 88.7 0.42 1.4E-05 37.9 4.3 39 39-77 23-66 (85)
100 1wf1_A RNA-binding protein RAL 88.7 0.16 5.6E-06 42.8 1.9 43 43-90 52-95 (110)
101 2jrs_A RNA-binding protein 39; 88.7 0.61 2.1E-05 39.3 5.5 48 43-90 50-101 (108)
102 2xs2_A Deleted in azoospermia- 88.6 0.17 5.8E-06 41.9 2.0 47 43-90 33-81 (102)
103 2cpi_A CCR4-NOT transcription 88.6 0.36 1.2E-05 40.8 4.1 52 39-90 36-96 (111)
104 2dgt_A RNA-binding protein 30; 88.6 0.41 1.4E-05 38.8 4.2 43 43-90 34-77 (92)
105 3beg_B Splicing factor, argini 88.5 0.25 8.6E-06 42.2 3.0 40 43-86 40-80 (115)
106 2e5h_A Zinc finger CCHC-type a 88.5 0.38 1.3E-05 38.9 4.0 47 43-89 40-90 (94)
107 3md1_A Nuclear and cytoplasmic 88.4 0.32 1.1E-05 38.4 3.4 48 43-90 25-76 (83)
108 2j76_E EIF-4B, EIF4B, eukaryot 88.4 0.44 1.5E-05 39.4 4.4 47 43-90 43-93 (100)
109 3lqv_A PRE-mRNA branch site pr 88.4 0.51 1.7E-05 39.9 4.9 48 43-90 32-80 (115)
110 3ulh_A THO complex subunit 4; 88.2 0.52 1.8E-05 39.2 4.7 47 43-89 53-102 (107)
111 2cpz_A CUG triplet repeat RNA- 88.1 0.53 1.8E-05 39.8 4.8 48 43-90 49-100 (115)
112 1h2v_Z 20 kDa nuclear CAP bind 88.1 0.54 1.8E-05 42.1 5.1 48 43-90 63-114 (156)
113 3n9u_C Cleavage and polyadenyl 88.0 0.52 1.8E-05 42.8 5.0 48 43-90 79-132 (156)
114 1wg5_A Heterogeneous nuclear r 88.0 0.37 1.3E-05 40.3 3.7 48 43-90 39-89 (104)
115 2do0_A HnRNP M, heterogeneous 88.0 0.38 1.3E-05 40.5 3.8 48 43-90 39-89 (114)
116 2cpy_A RNA-binding protein 12; 88.0 0.4 1.4E-05 40.8 3.9 48 43-90 39-89 (114)
117 2kxn_B Transformer-2 protein h 87.9 0.38 1.3E-05 42.2 3.8 48 43-90 70-121 (129)
118 1l3k_A Heterogeneous nuclear r 87.8 0.63 2.2E-05 42.6 5.5 48 43-90 37-87 (196)
119 2ki2_A SS-DNA binding protein 87.7 0.55 1.9E-05 37.7 4.5 51 39-90 19-75 (90)
120 3d2w_A TAR DNA-binding protein 87.7 0.19 6.4E-06 41.0 1.6 29 43-74 35-64 (89)
121 2i2y_A Fusion protein consists 87.6 0.6 2E-05 41.5 5.1 45 43-90 97-143 (150)
122 2cpe_A RNA-binding protein EWS 87.5 0.49 1.7E-05 39.8 4.2 48 43-90 39-98 (113)
123 3ns6_A Eukaryotic translation 87.5 0.3 1E-05 40.6 2.8 56 35-90 26-88 (100)
124 3s8s_A Histone-lysine N-methyl 87.5 0.64 2.2E-05 39.5 5.0 48 43-90 30-81 (110)
125 2dnm_A SRP46 splicing factor; 87.5 0.38 1.3E-05 39.8 3.4 48 43-90 37-88 (103)
126 1u6f_A Tcubp1, RNA-binding pro 87.5 0.72 2.5E-05 40.3 5.4 48 43-90 66-117 (139)
127 3ex7_B RNA-binding protein 8A; 87.4 0.49 1.7E-05 40.7 4.2 48 43-90 46-97 (126)
128 2khc_A Testis-specific RNP-typ 87.2 0.46 1.6E-05 40.3 3.9 47 43-89 64-114 (118)
129 1oo0_B CG8781-PA, drosophila Y 87.2 0.45 1.6E-05 39.8 3.8 48 43-90 50-101 (110)
130 3tht_A Alkylated DNA repair pr 87.0 0.23 7.7E-06 51.5 2.1 36 39-77 38-75 (345)
131 2ku7_A MLL1 PHD3-CYP33 RRM chi 87.0 0.51 1.7E-05 41.1 4.1 47 43-89 87-137 (140)
132 2lxi_A RNA-binding protein 10; 86.9 0.16 5.4E-06 41.6 0.7 48 43-90 25-78 (91)
133 2dhg_A TRNA selenocysteine ass 86.9 0.57 2E-05 38.7 4.2 48 43-90 34-85 (104)
134 2dgu_A Heterogeneous nuclear r 86.8 0.48 1.6E-05 39.3 3.7 43 43-90 35-78 (103)
135 1sjr_A Polypyrimidine tract-bi 86.8 0.36 1.2E-05 44.6 3.1 51 39-90 64-119 (164)
136 1wf0_A TDP-43, TAR DNA-binding 86.6 0.24 8.3E-06 39.8 1.7 44 43-89 29-72 (88)
137 2kt5_A RNA and export factor-b 86.5 0.81 2.8E-05 39.2 5.1 48 43-90 59-109 (124)
138 1wg1_A KIAA1579 protein, homol 86.4 0.53 1.8E-05 37.9 3.6 44 43-90 29-73 (88)
139 2dnp_A RNA-binding protein 14; 86.4 0.4 1.4E-05 38.7 2.9 43 43-90 33-76 (90)
140 2cjk_A Nuclear polyadenylated 86.3 0.7 2.4E-05 41.1 4.8 48 43-90 111-161 (167)
141 1l3k_A Heterogeneous nuclear r 86.3 0.73 2.5E-05 42.1 5.0 48 43-90 128-178 (196)
142 2e44_A Insulin-like growth fac 86.3 0.93 3.2E-05 36.8 5.1 47 43-90 39-87 (96)
143 1wel_A RNA-binding protein 12; 86.2 0.32 1.1E-05 42.0 2.4 48 43-90 49-99 (124)
144 1nu4_A U1A RNA binding domain; 86.1 0.38 1.3E-05 39.2 2.6 48 43-90 36-84 (97)
145 1fxl_A Paraneoplastic encephal 85.8 0.7 2.4E-05 40.8 4.5 48 43-90 26-77 (167)
146 1fjc_A Nucleolin RBD2, protein 85.5 0.97 3.3E-05 36.7 4.9 46 43-90 40-86 (96)
147 2dgp_A Bruno-like 4, RNA bindi 85.4 0.88 3E-05 37.6 4.7 36 43-78 37-75 (106)
148 2dha_A FLJ20171 protein; RRM d 85.4 1.6 5.4E-05 38.0 6.5 65 25-89 10-99 (123)
149 2div_A TRNA selenocysteine ass 85.3 0.82 2.8E-05 37.3 4.3 35 43-77 33-71 (99)
150 2dgx_A KIAA0430 protein; RRM d 85.2 0.5 1.7E-05 38.7 3.0 51 40-90 32-85 (96)
151 1wi8_A EIF-4B, eukaryotic tran 84.7 0.74 2.5E-05 38.1 3.8 47 43-90 39-89 (104)
152 3md3_A Nuclear and cytoplasmic 84.4 1.2 4E-05 39.3 5.3 48 43-90 24-74 (166)
153 1wez_A HnRNP H', FTP-3, hetero 84.3 0.88 3E-05 38.0 4.1 47 43-90 39-87 (102)
154 2a3j_A U1 small nuclear ribonu 84.1 0.85 2.9E-05 40.0 4.1 52 39-90 51-105 (127)
155 2ghp_A U4/U6 snRNA-associated 84.1 1 3.5E-05 44.3 5.2 47 43-89 65-112 (292)
156 2jvr_A Nucleolar protein 3; RN 83.9 0.35 1.2E-05 41.5 1.5 45 43-90 52-100 (111)
157 2lea_A Serine/arginine-rich sp 83.8 0.88 3E-05 40.0 4.1 48 43-90 71-122 (135)
158 2cqh_A IGF-II mRNA-binding pro 83.7 0.63 2.2E-05 37.6 2.9 44 43-90 32-78 (93)
159 2cqp_A RNA-binding protein 12; 83.6 0.51 1.8E-05 38.5 2.3 48 43-90 39-90 (98)
160 1rk8_A CG8781-PA, CG8781-PA pr 83.5 0.81 2.8E-05 41.5 3.9 48 43-90 96-147 (165)
161 2kn4_A Immunoglobulin G-bindin 83.2 0.5 1.7E-05 42.3 2.3 48 43-90 94-145 (158)
162 2dit_A HIV TAT specific factor 83.0 0.69 2.4E-05 39.1 3.0 55 35-90 40-97 (112)
163 2ek1_A RNA-binding protein 12; 82.8 1.1 3.7E-05 36.2 4.0 48 43-90 39-90 (95)
164 2fc9_A NCL protein; structure 82.6 1 3.6E-05 36.9 3.9 47 43-90 39-86 (101)
165 2qfj_A FBP-interacting repress 82.6 1.8 6.1E-05 40.1 6.0 48 43-90 149-200 (216)
166 1fj7_A Nucleolin RBD1, protein 82.2 0.88 3E-05 37.4 3.3 48 43-90 41-90 (101)
167 2dng_A Eukaryotic translation 82.1 1.7 5.8E-05 35.8 5.0 47 43-90 39-88 (103)
168 2cjk_A Nuclear polyadenylated 81.9 0.87 3E-05 40.5 3.4 46 43-89 27-75 (167)
169 2lkz_A RNA-binding protein 5; 81.8 0.93 3.2E-05 37.6 3.2 37 43-79 33-74 (95)
170 3u1l_A PRE-mRNA-splicing facto 81.7 0.73 2.5E-05 45.2 3.0 41 35-78 157-199 (240)
171 1x5o_A RNA binding motif, sing 81.4 0.68 2.3E-05 39.0 2.3 35 43-77 49-85 (114)
172 2db1_A Heterogeneous nuclear r 81.1 1.9 6.5E-05 36.8 5.1 48 43-90 41-93 (118)
173 2g4b_A Splicing factor U2AF 65 80.6 1.5 5.1E-05 39.1 4.5 43 45-90 41-83 (172)
174 3sde_A Paraspeckle component 1 80.5 1.5 5.2E-05 42.7 4.8 45 43-90 46-91 (261)
175 1b7f_A Protein (SXL-lethal pro 80.4 1.4 4.9E-05 38.9 4.3 48 43-90 27-78 (168)
176 4f02_A Polyadenylate-binding p 80.3 0.99 3.4E-05 42.5 3.3 48 43-90 127-176 (213)
177 1jmt_A Splicing factor U2AF 35 80.3 1 3.5E-05 37.9 3.0 35 43-77 51-87 (104)
178 2cpd_A Apobec-1 stimulating pr 79.9 1.8 6.3E-05 35.3 4.5 43 43-90 39-84 (99)
179 3q2s_C Cleavage and polyadenyl 79.7 1.8 6.2E-05 41.7 5.0 48 43-90 92-145 (229)
180 3nmr_A Cugbp ELAV-like family 79.5 1.4 4.6E-05 39.3 3.8 36 43-78 27-67 (175)
181 3nmr_A Cugbp ELAV-like family 79.2 0.8 2.7E-05 40.9 2.1 36 43-78 119-156 (175)
182 3pgw_A U1-A; protein-RNA compl 79.1 1.2 4E-05 43.6 3.5 45 43-89 231-277 (282)
183 2lmi_A GRSF-1, G-rich sequence 78.9 1.6 5.6E-05 36.4 3.9 48 43-90 35-87 (107)
184 2yh0_A Splicing factor U2AF 65 78.8 1.5 5.3E-05 40.0 4.0 43 45-90 41-83 (198)
185 3jz0_A Lincosamide nucleotidyl 78.7 1.3 4.6E-05 44.4 3.8 46 160-205 24-69 (287)
186 2lcw_A RNA-binding protein FUS 79.8 0.43 1.5E-05 40.5 0.0 55 36-90 22-90 (116)
187 3tyt_A Heterogeneous nuclear r 78.3 0.73 2.5E-05 43.6 1.7 52 37-90 21-75 (205)
188 2dgw_A Probable RNA-binding pr 78.3 2.1 7E-05 34.3 4.2 47 43-90 34-82 (91)
189 2pe8_A Splicing factor 45; RRM 78.0 1.7 5.9E-05 36.6 3.8 47 43-89 37-88 (105)
190 2qfj_A FBP-interacting repress 78.0 3.8 0.00013 37.8 6.6 47 43-89 52-102 (216)
191 3tyt_A Heterogeneous nuclear r 77.8 1 3.4E-05 42.6 2.5 37 43-79 147-186 (205)
192 2g4b_A Splicing factor U2AF 65 77.8 1.2 4E-05 39.8 2.8 47 43-89 118-168 (172)
193 3smz_A Protein raver-1, ribonu 77.3 3.1 0.00011 40.5 6.0 43 43-89 46-89 (284)
194 2dnl_A Cytoplasmic polyadenyla 77.2 1.3 4.4E-05 37.5 2.7 35 43-78 32-72 (114)
195 3v4m_A Splicing factor U2AF 65 77.0 1.7 5.9E-05 36.5 3.5 47 43-89 39-91 (105)
196 2f3j_A RNA and export factor b 77.0 1.3 4.4E-05 41.0 2.9 48 43-90 112-162 (177)
197 1b7f_A Protein (SXL-lethal pro 76.7 2.4 8.2E-05 37.4 4.6 36 43-78 113-151 (168)
198 4f02_A Polyadenylate-binding p 76.6 2.6 8.8E-05 39.6 5.0 37 43-79 39-78 (213)
199 3ue2_A Poly(U)-binding-splicin 76.2 2.7 9.2E-05 36.3 4.6 47 43-89 49-103 (118)
200 2cpx_A Hypothetical protein FL 76.2 3.2 0.00011 34.7 4.9 48 43-90 49-100 (115)
201 2dhx_A Poly (ADP-ribose) polym 76.1 2.9 9.8E-05 35.6 4.5 44 43-91 37-80 (104)
202 2adc_A Polypyrimidine tract-bi 76.0 1.3 4.4E-05 42.2 2.7 46 43-90 59-105 (229)
203 2hgl_A HNRPF protein, heteroge 75.8 1.6 5.6E-05 38.6 3.1 48 43-90 68-120 (136)
204 1fxl_A Paraneoplastic encephal 75.4 3.4 0.00012 36.2 5.2 35 43-77 112-149 (167)
205 3s6e_A RNA-binding protein 39; 74.9 1.7 5.9E-05 37.3 2.9 47 43-90 41-88 (114)
206 3md3_A Nuclear and cytoplasmic 74.1 2.7 9.3E-05 36.8 4.2 47 43-89 111-161 (166)
207 3pgw_S U1-70K; protein-RNA com 73.3 2.8 9.7E-05 44.5 4.7 48 43-90 126-177 (437)
208 3egn_A RNA-binding protein 40; 72.9 4.1 0.00014 35.6 5.0 48 43-90 69-125 (143)
209 1qm9_A Polypyrimidine tract-bi 72.7 1.5 5.2E-05 40.3 2.2 45 43-89 144-191 (198)
210 2fmp_A DNA polymerase beta; nu 72.5 15 0.0005 37.6 9.7 131 161-325 156-292 (335)
211 2yh0_A Splicing factor U2AF 65 72.5 1.9 6.6E-05 39.3 2.8 48 43-90 138-189 (198)
212 2adc_A Polypyrimidine tract-bi 72.4 1.8 6.2E-05 41.2 2.7 45 43-90 175-223 (229)
213 2fc8_A NCL protein; structure 71.4 3.4 0.00012 33.7 3.9 32 59-90 55-87 (102)
214 1fje_B Nucleolin RBD12, protei 71.0 2 6.7E-05 38.5 2.5 46 43-90 123-169 (175)
215 3pgw_A U1-A; protein-RNA compl 70.9 3.7 0.00013 40.0 4.7 48 43-90 37-85 (282)
216 3smz_A Protein raver-1, ribonu 69.3 2 6.7E-05 42.0 2.2 48 43-90 209-259 (284)
217 2hgn_A Heterogeneous nuclear r 66.1 3.2 0.00011 36.9 2.8 46 43-89 70-117 (139)
218 1qm9_A Polypyrimidine tract-bi 63.7 3.3 0.00011 37.9 2.5 46 43-90 28-74 (198)
219 2dnn_A RNA-binding protein 12; 63.5 6.4 0.00022 33.2 4.1 47 43-90 40-88 (109)
220 2diu_A KIAA0430 protein; struc 61.8 5.7 0.0002 33.2 3.3 45 39-90 31-79 (96)
221 2dnr_A Synaptojanin-1; RRM dom 61.2 6.1 0.00021 32.7 3.3 43 43-90 39-81 (91)
222 2bcq_A DNA polymerase lambda; 60.9 23 0.00079 36.1 8.4 127 161-325 153-286 (335)
223 2hgm_A HNRPF protein, heteroge 57.7 6.8 0.00023 34.1 3.3 31 59-89 85-115 (126)
224 1ufw_A Synaptojanin 2; RNP dom 57.0 6.7 0.00023 32.7 2.9 43 43-90 48-90 (95)
225 2m2b_A RNA-binding protein 10; 56.9 4.7 0.00016 34.8 2.1 36 43-79 47-87 (131)
226 3sde_A Paraspeckle component 1 55.5 6.9 0.00024 37.9 3.3 36 43-78 120-157 (261)
227 3b0x_A DNA polymerase beta fam 55.2 53 0.0018 35.8 10.7 115 162-325 165-279 (575)
228 2ghp_A U4/U6 snRNA-associated 50.9 10 0.00036 36.8 3.8 47 43-90 235-286 (292)
229 1jaj_A DNA polymerase beta-lik 46.3 18 0.00063 33.4 4.4 105 175-325 29-136 (174)
230 3dxb_A Thioredoxin N-terminall 45.7 12 0.0004 35.2 3.1 47 43-89 153-207 (222)
231 2j8a_A Histone-lysine N-methyl 45.2 9.3 0.00032 34.0 2.1 25 43-67 30-57 (136)
232 1fje_B Nucleolin RBD12, protei 42.1 23 0.0008 31.2 4.4 32 59-90 55-86 (175)
233 1wwh_A Nucleoporin 35, nucleop 38.9 34 0.0012 29.6 4.6 46 43-91 47-93 (119)
234 2fcl_A Hypothetical protein TM 34.5 1.1E+02 0.0039 27.6 7.8 41 163-203 18-62 (169)
235 2l9w_A U4/U6 snRNA-associated- 32.6 38 0.0013 29.1 3.8 29 44-75 51-79 (117)
236 1jms_A Terminal deoxynucleotid 28.1 40 0.0014 35.0 3.9 45 161-206 180-224 (381)
237 2kng_A Protein LSR2; DNA-bindi 27.0 65 0.0022 24.0 3.7 28 307-335 10-37 (55)
238 2ihm_A POL MU, DNA polymerase 27.0 35 0.0012 35.1 3.2 45 161-206 160-204 (360)
239 2pbe_A AAD6, aminoglycoside 6- 23.3 51 0.0017 32.8 3.5 42 163-205 9-53 (294)
No 1
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-85 Score=705.41 Aligned_cols=406 Identities=34% Similarity=0.630 Sum_probs=310.4
Q ss_pred CCCccccchHHHHHHHHhhhcceee------------------eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC
Q psy10458 18 SGNVLSKYFVPSIEYRRLEAQRSIL------------------FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG 79 (563)
Q Consensus 18 ~~~~~~~~~~~~~~~r~~qa~rsv~------------------~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~ 79 (563)
.+++++|+|+|++++||+||+|||| ||+|++||||+++| +||||||+++++++++++++
T Consensus 33 ~~~~~~~~~~~~~~~r~~qa~rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g--~~~~vef~~~~~~~~~~~~~- 109 (464)
T 3pq1_A 33 EDKIPKRRFSEMQNERREQAQRTVLIHCPEKISENKFLKYLSQFGPINNHFFYESFG--LYAVVEFCQKESIGSLQNGT- 109 (464)
T ss_dssp -------CCHHHHHHHHHHHHTEEEEEECCC---CHHHHHHGGGSCCCCEEEECSSS--EEEEEECC---CCHHHHSSC-
T ss_pred ccCCCCCCHHHHHHHHHHHhcceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccCC--eEEEEEeCCHHHHHHHHhcc-
Confidence 3457899999999999999999999 99999999999999 99999999999999998874
Q ss_pred ccCCCcceeccCccchhccccCcccccCcccccccccCCCCCCCCCHHHHHHHhcccccHHHHHHHHHHHcCCCHHHHHH
Q psy10458 80 HLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRL 159 (563)
Q Consensus 80 ~~~~~~~~~~k~r~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~l~~qI~~l~~~~~pt~~e~~~ 159 (563)
.+|+++. . +|+.++|.+.|+++++|++||..|+++++||++|.++
T Consensus 110 ------~~p~~~~----------------------~-------~~~~~~l~~~L~~a~sl~~EI~~f~~~i~PT~eE~~~ 154 (464)
T 3pq1_A 110 ------HTPXXXX----------------------X-------XXSNKQLFELLCYAESIDDQLNTLLKEFQLTEENTKL 154 (464)
T ss_dssp ------CCCCCBC----------------------C-------C--CHHHHHHHTTSSSHHHHHHHHHHHHBCCHHHHHH
T ss_pred ------CCCcccc----------------------c-------cCCHHHHHHHHhccchHHHHHHHHHHHhCCCHHHHHH
Confidence 2444422 1 4788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCC--C--cccchhhcccccCCcchHHHHHHH
Q psy10458 160 RFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGD--N--DQCRLMFHCKSSLGSERSQTLRHL 235 (563)
Q Consensus 160 R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~--~--~~~~l~~~~k~~~~~~R~~~~~~L 235 (563)
|..++.+|++++++.||+++|+||||++|||++++|||||||..+...... . .+..+.|+.|. .+++|.+++++|
T Consensus 155 R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~-l~seR~~~~~iL 233 (464)
T 3pq1_A 155 RYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKN-VPSERIATQKIL 233 (464)
T ss_dssp HHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC---EECCCC-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccchhhhhhhcc-chhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999876531100 0 11234566663 457899999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEeecchhhhhhHHHHHHHhhcCCCchhHHHHH
Q psy10458 236 ETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTI 315 (563)
Q Consensus 236 ~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr~r~Lv~~I 315 (563)
+.++++|+.+.| |+.+|+.|.+||||||||.|..+|++||||+||..|+.||+||+.|.+.||++|+|+++|
T Consensus 234 ~~la~~L~~~~~--------~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll~~y~~~dprlr~Lvl~v 305 (464)
T 3pq1_A 234 SVLGECLDHFGP--------GCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIYGALDSRVRALVFSV 305 (464)
T ss_dssp HHHHHHHHHSST--------TEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--------CCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 999999999877 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcC--CCCCchhhhhhhhcccCcceeeCCcccccccccccccCCCCCCC
Q psy10458 316 KKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPE 393 (563)
Q Consensus 316 K~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~--pvLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~~~~~~~~ 393 (563)
|+||+.+||+++..|||||||+|++|||||||+. |+||+||++......++ .+.++||||.|.+|++++++ .
T Consensus 306 K~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~-~~~vdg~~~~F~~dl~~l~~-----~ 379 (464)
T 3pq1_A 306 RCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAED-KCVIEGNNCTFVRDLSRIKP-----S 379 (464)
T ss_dssp HHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------------------C
T ss_pred HHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCccc-ceeeccccccccccHhhcCC-----C
Confidence 9999999999999998899999999999999994 89999999876554333 56789999999999988764 4
Q ss_pred CCCCCHHHHHHHHHHhhccCCCCCceEEecCCCCcCCCCCCCeEEecCCCCCCCccccCCHHhHHHHHHHHHHHHHHHHh
Q psy10458 394 QSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLES 473 (563)
Q Consensus 394 ~n~~sl~~LL~~FF~fYs~Fd~~~~vIsir~G~~~~K~~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~~A~~~L~~ 473 (563)
.|++++++||.+||+||++|||.+.+||| .+|+++||+..++++|+.++++|+|+|++
T Consensus 380 ~N~~slgeLL~gFF~yYa~FDf~~~vIsI----------------------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 380 QNTETLELLLKEFFEYFGNFAXXXXXXXX----------------------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp CCCCCHHHHHHHHHHHGGGCCCCCCCCCC----------------------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHHhCCCccccccc----------------------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999997 78999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccccccccccCCc
Q psy10458 474 TANSNNKPSHTPSESWGLLELFKKQNL 500 (563)
Q Consensus 474 ~~~~~~~~~~~~~~~wgl~~ll~~~~~ 500 (563)
..+.. ++.+.+.+|||++||.|+..
T Consensus 438 ~~~~~--~~~~~~~~wgl~~ll~~~~~ 462 (464)
T 3pq1_A 438 EDTDR--PSISSNRPWGLVSLLLPSAP 462 (464)
T ss_dssp C-------------CCTTGGGCC----
T ss_pred ccccC--cCCCCCCCcchHHHhccCcC
Confidence 88765 33456789999999999753
No 2
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=4.8e-59 Score=497.63 Aligned_cols=315 Identities=26% Similarity=0.387 Sum_probs=273.4
Q ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcc
Q psy10458 134 ASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQ 213 (563)
Q Consensus 134 ~~~~~l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~ 213 (563)
...+.|+++|..+++.++||++|.+.|..++..|++++++.||++.|++|||+++|+++++||||++|..+...+
T Consensus 39 ~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~----- 113 (405)
T 4e8f_A 39 NSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ----- 113 (405)
T ss_dssp CSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC--------
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCC-----
Confidence 334568999999999999999999999999999999999999999999999999999999999999999875310
Q ss_pred cchhhcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEe-ecCC----cceEEEeecc
Q psy10458 214 CRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYN-HDMS----ALECDLSMTN 288 (563)
Q Consensus 214 ~~l~~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~-~~~~----gi~~DIS~nN 288 (563)
. .+++..+++.|+. ...+++.|.+||||||||. |..+ |++||||++|
T Consensus 114 ---------~--------~~~l~~l~~~L~~-----------~~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n 165 (405)
T 4e8f_A 114 ---------S--------DTIALQFYEELIA-----------EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN 165 (405)
T ss_dssp ---------C--------TTHHHHHHHHHHH-----------TTEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESC
T ss_pred ---------H--------HHHHHHHHHHHHh-----------cCCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecc
Confidence 0 0145667777776 2357889999999999999 7777 9999999999
Q ss_pred hhhhhhHHHHHHHhhcCCCchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHh-hc--CCCCCchhhhhhhhccc
Q psy10458 289 LTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYL-QS--VKVLPPLKLLIDEASLK 365 (563)
Q Consensus 289 ~~gl~nS~LL~~y~~~dpr~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fL-Q~--~pvLP~Lq~l~~~~~~~ 365 (563)
..|+.||+|++.|.+.||++|+|+++||+||+.+||+++..|| ||||+|++|||+|| |. +|+||+||.+....
T Consensus 166 ~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~Gg-lsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~--- 241 (405)
T 4e8f_A 166 RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGT-LSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQ--- 241 (405)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTS-CCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCC---
T ss_pred cchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCC-cChHHHHHHHHHHHHhccCCCcCCchhhccccc---
Confidence 9999999999999999999999999999999999999999998 99999999999999 65 58999999876431
Q ss_pred CcceeeCCcccccccccccccCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCceEEec-CCCCcCCC------------
Q psy10458 366 DRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLY-LGSPIPKP------------ 431 (563)
Q Consensus 366 d~~~~~~g~d~~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs-~Fd~~~~vIsir-~G~~~~K~------------ 431 (563)
...++||+|.|.+++... +++.|..++|+||.+||+||| +|||.+.+||++ .|+.++|.
T Consensus 242 --~~~~~g~~~~f~~~l~~~-----~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g 314 (405)
T 4e8f_A 242 --EKIVDGFDVGFDDKLEDI-----PPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTG 314 (405)
T ss_dssp --CCEETTEECCCCCCGGGS-----CCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC------
T ss_pred --ccccCCeeeccccchhhh-----ccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccc
Confidence 356899999999886543 235789999999999999999 999999999999 78776641
Q ss_pred -------CCCCeEEecCCCCCCCccccCCHHhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccccccccccCCcCcc
Q psy10458 432 -------EHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELFKKQNLSEK 503 (563)
Q Consensus 432 -------~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~~A~~~L~~~~~~~~~~~~~~~~~wgl~~ll~~~~~~~~ 503 (563)
...+|+|+|||++++|+|++|+..++.+|+.+|++|+.+|...... .+ |..||.+.++...
T Consensus 315 ~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~~---------~~--w~~Lf~~~~~~~~ 382 (405)
T 4e8f_A 315 SADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYP---------IP--YDSLFEEAPIPPR 382 (405)
T ss_dssp -------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSSS---------CC--GGGGGSCCCCC--
T ss_pred cccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhccC---------CC--HHHHhCcCCCccc
Confidence 2458999999999999999999999999999999999999986532 34 4589999887764
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=3.9e-57 Score=474.97 Aligned_cols=294 Identities=27% Similarity=0.414 Sum_probs=251.6
Q ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccchh
Q psy10458 138 TITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLM 217 (563)
Q Consensus 138 ~l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~ 217 (563)
.|++.+.++|+.++||++|.+.|..+++.|++++++.||+++|+||||+++|+++++||||+||..+....
T Consensus 15 el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~--------- 85 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ--------- 85 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSC---------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCC---------
Confidence 46678888999999999999999999999999999999999999999999999999999999998876311
Q ss_pred hcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecC-----CcceEEEeecchhhh
Q psy10458 218 FHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDM-----SALECDLSMTNLTAL 292 (563)
Q Consensus 218 ~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~-----~gi~~DIS~nN~~gl 292 (563)
+. .-.+..+...+. ...+++.|.+||||||||.+.. +|+.||||++|.+|+
T Consensus 86 ----------~~--~~~~~~~~~~~~------------~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~ 141 (349)
T 4fh3_A 86 ----------SD--TIALQFYEELIA------------EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAI 141 (349)
T ss_dssp ----------HH--HHHHHHHHHHHH------------TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHH
T ss_pred ----------hH--HHHHHHHHHHHh------------hcccceEeeeeeeeeEEEEecccccccccceeecCcCcchHH
Confidence 00 011222222222 2346778999999999999864 689999999999999
Q ss_pred hhHHHHHHHhhcCCCchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhc---CCCCCchhhhhhhhcccCcce
Q psy10458 293 YMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQS---VKVLPPLKLLIDEASLKDRRI 369 (563)
Q Consensus 293 ~nS~LL~~y~~~dpr~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~---~pvLP~Lq~l~~~~~~~d~~~ 369 (563)
+||++|+.|...||++|+|+++||+||+.+||+++..|| ||||+|++|||||||+ +|++|+++.... ....
T Consensus 142 ~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~-lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~-----~~~~ 215 (349)
T 4fh3_A 142 HNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGT-LSSYGYVLMVLYYLIHVIKPPVFPNLLLSPL-----KQEK 215 (349)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTS-CCHHHHHHHHHHHHHHTSSSCSSCCSSSCTT-----CCCC
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCC-CChHHHHHHHHHHHHhccCCCcCchhhhccc-----cccc
Confidence 999999999999999999999999999999999999997 9999999999999997 488998864321 1135
Q ss_pred eeCCcccccccccccccCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCceEEecCCCC-cCC-----------------
Q psy10458 370 SEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSP-IPK----------------- 430 (563)
Q Consensus 370 ~~~g~d~~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs-~Fd~~~~vIsir~G~~-~~K----------------- 430 (563)
.++||+|.|.++++.++.. .|..++++||.+||+||| +|||.+.+||++.|+. ++|
T Consensus 216 ~~~~~~~~f~~~~~~~~~~-----~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~ 290 (349)
T 4fh3_A 216 IVDGFDVGFDDKLEDIPPS-----QNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQ 290 (349)
T ss_dssp EETTEECCCCCCGGGSCCC-----SCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC-----------
T ss_pred cccCcccccccchhhcccc-----cCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccc
Confidence 6899999999998887654 899999999999999999 8999999999987653 322
Q ss_pred --CCCCCeEEecCCCCCCCccccCCHHhHHHHHHHHHHHHHHHHhhh
Q psy10458 431 --PEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTA 475 (563)
Q Consensus 431 --~~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~~A~~~L~~~~ 475 (563)
....+|+|+|||++++|+||+|+..++.+|+.+|++|+++|.+..
T Consensus 291 ~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~ 337 (349)
T 4fh3_A 291 IIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 337 (349)
T ss_dssp ----CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc
Confidence 123689999999999999999999999999999999999998643
No 4
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=8.5e-57 Score=471.10 Aligned_cols=309 Identities=17% Similarity=0.262 Sum_probs=255.0
Q ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccch
Q psy10458 137 NTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRL 216 (563)
Q Consensus 137 ~~l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l 216 (563)
..++++|.+||++++||++|.++|..++..|++++++.||++.|++|||+++|+++++||||+||..+....
T Consensus 5 ~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~-------- 76 (384)
T 3hj4_A 5 REFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSP-------- 76 (384)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCG--------
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcc--------
Confidence 458999999999999999999999999999999999999999999999999999999999999999875311
Q ss_pred hhcccccCCcchHHHHHHHHH--HHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEeecchhhhhh
Q psy10458 217 MFHCKSSLGSERSQTLRHLET--VGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYM 294 (563)
Q Consensus 217 ~~~~k~~~~~~R~~~~~~L~~--l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~n 294 (563)
+. ...++...+..++. +.+.+... ++..|. |.+||||||||.|..+|++||||+||..|+.|
T Consensus 77 -~~----~~~~~~~~~~~lrll~L~k~~~~~----------~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~n 140 (384)
T 3hj4_A 77 -WL----QGMERVDEQNNKRMTRFGKEASAM----------GMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNIGGVEN 140 (384)
T ss_dssp -GG----TTCHHHHHHHHHHHHHHHHHHHHH----------TCEEEE-EECSSSCEEEEECTTTCCEEEEEECCHHHHHH
T ss_pred -cc----cccchhhHHHHHHHHHHHhhcccC----------CeeEEe-ecCcccCEEEEEEcCCCeEEEEEecccchHHH
Confidence 00 00112222222221 33333221 555554 67999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcCCCCCchhhhhhhhcccCcceeeCC
Q psy10458 295 AELLYLFGEI-DWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDG 373 (563)
Q Consensus 295 S~LL~~y~~~-dpr~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~pvLP~Lq~l~~~~~~~d~~~~~~g 373 (563)
|++|+.|.+. ++|+|+|+++||+||+.+||+++..|| ||||+|++|||+|||++|+||+||.+..... .+.+++
T Consensus 141 s~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~Gg-LsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~----~~~~~~ 215 (384)
T 3hj4_A 141 SKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERST-FNSFTVTTMALMVLQELGLLPVFSKPTGEFG----ELTVAD 215 (384)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTS-BCHHHHHHHHHHHHHHHTSSCCCCCCCSTTS----CCCHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCC-ccHHHHHHHHHHHHhcCCCCCccccccccCC----cccccc
Confidence 9999999999 568999999999999999999999998 9999999999999999999999998654321 233445
Q ss_pred cccccccccccccCCCCCCCCCCCCHHHH----HHHHHHhhccCCCCCceEEecCCCCcC--------------------
Q psy10458 374 VNCTFVRDITKLQFHPSIPEQSTDSLTTL----LFGFFEFYSQYDFNNQGISLYLGSPIP-------------------- 429 (563)
Q Consensus 374 ~d~~F~~d~~~l~~~~~~~~~n~~sl~~L----L~~FF~fYs~Fd~~~~vIsir~G~~~~-------------------- 429 (563)
++ |..++.++++.+...+.|.++||+| |++||+||++|||.+++|||+.++...
T Consensus 216 ~~--~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~ 293 (384)
T 3hj4_A 216 AE--MLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRL 293 (384)
T ss_dssp HH--HHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred cH--hhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhh
Confidence 54 5566666665444446899999999 999999999999999999998865430
Q ss_pred ------------------------------CCCCCCeEEecCCCCCCCccccCCHHhHHHHHHHHHHHHHHHHhhhcC
Q psy10458 430 ------------------------------KPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANS 477 (563)
Q Consensus 430 ------------------------------K~~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~~A~~~L~~~~~~ 477 (563)
.|.+++..|+| |+..|||||.|+...+.+|+.||++|+.++.....+
T Consensus 294 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (384)
T 3hj4_A 294 EWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESE 370 (384)
T ss_dssp HHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTGGG
T ss_pred hhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhccccc
Confidence 12367899999 999999999999999999999999999999875443
No 5
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-53 Score=439.79 Aligned_cols=268 Identities=22% Similarity=0.330 Sum_probs=237.0
Q ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccchh
Q psy10458 138 TITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLM 217 (563)
Q Consensus 138 ~l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~ 217 (563)
.|+++|..|++.++||++|.+.|..+++.|++++++.||+++|++|||+++|+++++||||+++..+....
T Consensus 20 ~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~--------- 90 (323)
T 3nyb_A 20 WLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGK--------- 90 (323)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGG---------
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCCh---------
Confidence 46899999999999999999999999999999999999999999999999999999999999999875310
Q ss_pred hcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEeecchhhhhhHHH
Q psy10458 218 FHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAEL 297 (563)
Q Consensus 218 ~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~nS~L 297 (563)
+..+.|..+++.|+.. + .+.+|+.|.+||||||||.|..+|++||||++|..|+++|++
T Consensus 91 ------------~~~~~l~~l~~~L~~~-~--------~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~l 149 (323)
T 3nyb_A 91 ------------ESRNNLYSLASHLKKK-N--------LATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKL 149 (323)
T ss_dssp ------------GHHHHHHHHHHHHHHT-T--------SCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHH
T ss_pred ------------hHHHHHHHHHHHHhhC-C--------CceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHH
Confidence 1134678888988873 2 456899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcCC-CCCchhhhhhhhcccCcceeeCCccc
Q psy10458 298 LYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVK-VLPPLKLLIDEASLKDRRISEDGVNC 376 (563)
Q Consensus 298 L~~y~~~dpr~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~p-vLP~Lq~l~~~~~~~d~~~~~~g~d~ 376 (563)
++.|...+|++|+|+++||+||+.+||+++..|| ||||+|++||++|||+.| ++|. +
T Consensus 150 i~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~-lssy~l~lmvi~fLQ~~p~~~~~-----------~---------- 207 (323)
T 3nyb_A 150 IREWLDDTPGLRELVLIVKQFLHARRLNNVHTGG-LGGFSIICLVFSFLHMHPRIITN-----------E---------- 207 (323)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTC-CCHHHHHHHHHHHHHTCHHHHTT-----------C----------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCC-cCHHHHHHHHHHHHHhCCccCcc-----------c----------
Confidence 9999999999999999999999999999999998 999999999999999953 2221 0
Q ss_pred ccccccccccCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCceEEecCCCC--cCCC---------CCCCeEEecCCCC
Q psy10458 377 TFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSP--IPKP---------EHGALYINNPLER 444 (563)
Q Consensus 377 ~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs-~Fd~~~~vIsir~G~~--~~K~---------~~~~L~I~DPfe~ 444 (563)
-.+..++|+||.+||+||| +|||.+.+|+++.|++ ++|. ...+|+|+||+++
T Consensus 208 ----------------~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~~~~~~~~~l~IeDP~~~ 271 (323)
T 3nyb_A 208 ----------------IDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAIQPIKNPFSLAIQDPGDE 271 (323)
T ss_dssp ----------------BCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGGCSCSCSSSCCBEETTEE
T ss_pred ----------------CCccccHHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccccccCCCceEEEeCCCCC
Confidence 0235689999999999999 9999999999999873 3332 1358999999999
Q ss_pred CCCccccCCHHhHHHHHHHHHHHHHHHHhhh
Q psy10458 445 GLNVSKNVSFEELERLKVEVRNASWTLESTA 475 (563)
Q Consensus 445 ~~NvarnVs~~~~~~i~~ef~~A~~~L~~~~ 475 (563)
++|+|+++ ..+..|+.+|++|+.+|....
T Consensus 272 ~~nigr~~--~~~~~I~~~F~~A~~~L~~~~ 300 (323)
T 3nyb_A 272 SNNISRGS--FNIRDIKKAFAGAFDLLTNRC 300 (323)
T ss_dssp EEETTTTC--TTHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccccch--HHHHHHHHHHHHHHHHHHHhh
Confidence 99999986 678999999999999999863
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.1e-52 Score=442.13 Aligned_cols=295 Identities=21% Similarity=0.307 Sum_probs=237.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEccee-cCCCCCCCccceeeccccCCCCCC-cccchh
Q psy10458 140 TQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSV-NNFGKLGCDLDLVLQLDLQSQGDN-DQCRLM 217 (563)
Q Consensus 140 ~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~~-~Gl~~~~SDLDl~l~~~~~~~~~~-~~~~l~ 217 (563)
++++.+.++...++++|.+.|+.+++.|++++++.||+++|++|||+. +|+++++||||++|..+....... ...
T Consensus 29 ~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~--- 105 (353)
T 2ikf_A 29 GRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDA--- 105 (353)
T ss_dssp HHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCC---
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccc---
Confidence 567778888888999999999999999999999999999999999996 999999999999998764211000 000
Q ss_pred hcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEeecchhhhhhHHH
Q psy10458 218 FHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAEL 297 (563)
Q Consensus 218 ~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~nS~L 297 (563)
.....|....++|..++++|+... .+.+|+.|.+||||||||.+ .+|++||||++|.+|++||++
T Consensus 106 -----~~~~~~~~~~~~l~~l~~~L~~~~---------~~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~~g~~~t~l 170 (353)
T 2ikf_A 106 -----ATQVAKGLQADILAKLARVIRQKH---------LSWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRRNGVRNSAL 170 (353)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHHC---------TTSEEEEECSSSSCEEEEEC-SSSCEEEEEESCCHHHHHHHH
T ss_pred -----hhhhhhhhHHHHHHHHHHHHHhcC---------CCCceEEecccceeEEEEEc-CCCcEEEEEecCccHHHHHHH
Confidence 000011122467888899998742 45689999999999999999 589999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHcCCCCCCC-CCCcChHHHHHHHHHHhhc---CCCCCchhhhhhhhcccCcceeeCC
Q psy10458 298 LYLFGEIDWRVRPLVFTIKKWAKDINLTNPTP-GRWITNFSLTLLVLFYLQS---VKVLPPLKLLIDEASLKDRRISEDG 373 (563)
Q Consensus 298 L~~y~~~dpr~r~Lv~~IK~Wak~~gL~~~~~-G~~LsSYsL~LLVI~fLQ~---~pvLP~Lq~l~~~~~~~d~~~~~~g 373 (563)
++.|.+.||++|+|+++||+||+.+||+++.. |+ ||||+|++|||+|||+ +|++|+++.... .+++
T Consensus 171 l~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~-lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~---------~~~~ 240 (353)
T 2ikf_A 171 LRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGS-ITSYGFNLMVVYYLLQRNHLQFVPPSTIDVS---------RVEP 240 (353)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCC-BCHHHHHHHHHHHHHHTTSSCCCCGGGCCGG---------GSCS
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCC-chHHHHHHHHHHHHHhcCCCCCcCccccChh---------hccC
Confidence 99999999999999999999999999999999 65 9999999999999987 378888763211 1122
Q ss_pred cccccccccccccCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCceEEecCCCCcCC------------------CCCC
Q psy10458 374 VNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPK------------------PEHG 434 (563)
Q Consensus 374 ~d~~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs-~Fd~~~~vIsir~G~~~~K------------------~~~~ 434 (563)
++..+ + ...+..|..++++||.+||+||+ +|||.+.+||++.|+.++| +...
T Consensus 241 ~~~~~-------~--~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~ 311 (353)
T 2ikf_A 241 LPPHL-------P--LEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHY 311 (353)
T ss_dssp SCCCC-------C--CCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCEEHHHHTCSHHHHTTCEETTEECCC
T ss_pred CCcCC-------c--cccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCcceechhhcccccccccccccCCCCcc
Confidence 21111 0 01224678999999999999999 8999999999999887654 1246
Q ss_pred CeEEecCCCCCCCccccCCHHhHHHHHHHHHHHHHHH
Q psy10458 435 ALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTL 471 (563)
Q Consensus 435 ~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~~A~~~L 471 (563)
+|+|+|||++++|+|++|+..++.+|+.+|++|++++
T Consensus 312 ~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 312 QWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp SSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred eEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998754
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=6.4e-51 Score=440.05 Aligned_cols=296 Identities=20% Similarity=0.297 Sum_probs=241.0
Q ss_pred CCCHHHHHHHhcccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcce-ecCCCCCCCccceee
Q psy10458 123 PPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSS-VNNFGKLGCDLDLVL 201 (563)
Q Consensus 123 ~~~~~~l~~~L~~~~~l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~-~~Gl~~~~SDLDl~l 201 (563)
+|..+++.. ++.+|........+++++.+.|..+.++|+.++++.||+++|++|||+ .+|+++|+||||+|+
T Consensus 11 ~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~ 83 (468)
T 2b4v_A 11 NPSPDHYAV-------WGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLAC 83 (468)
T ss_dssp CCCHHHHHH-------HHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEE
T ss_pred CCChHHHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEE
Confidence 456565544 678999999999999999999999999999999999999999999999 599999999999999
Q ss_pred ccccCCCCCCcccchhhcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCC--ceeeEEecCCCeeEEEEe----e
Q psy10458 202 QLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPG--CSQVKRILGARVPIIKYN----H 275 (563)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g--~~~V~~I~~ARVPIIKf~----~ 275 (563)
..++. . + ....+ ...+..|++.|+...| | +.+++.|.+||||||||. +
T Consensus 84 ~~~~~-~---~-------------~~~~~-~~~~~~l~~~L~~~~~--------~~~~~~v~~I~~ArVPIIK~~~~~~d 137 (468)
T 2b4v_A 84 MFDDP-Y---P-------------SHEVQ-AKRTDKLRTVIKRYVP--------HYLRNNLLGLTEARTPVVKLRFANDE 137 (468)
T ss_dssp ECSSS-S---C-------------CHHHH-HHHHHHHHHHHHTTSC--------HHHHTTEEEECSSSSCEEEECCCCHH
T ss_pred ecCCC-C---c-------------cchhh-HHHHHHHHHHHHHhcc--------ccccceeEeccCCCcceEEEEecccc
Confidence 98742 1 0 00001 1234568888987655 6 578999999999999997 2
Q ss_pred c-------------------------------------------------------------------------------
Q psy10458 276 D------------------------------------------------------------------------------- 276 (563)
Q Consensus 276 ~------------------------------------------------------------------------------- 276 (563)
+
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~ 217 (468)
T 2b4v_A 138 KVARARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPD 217 (468)
T ss_dssp HHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCC
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhccccc
Confidence 1
Q ss_pred ------------------------CCcceEEEeecchhhhhhHHHHHHHhhcCCC-chhHHHHHHHHHHHcCCCCCCCCC
Q psy10458 277 ------------------------MSALECDLSMTNLTALYMAELLYLFGEIDWR-VRPLVFTIKKWAKDINLTNPTPGR 331 (563)
Q Consensus 277 ------------------------~~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr-~r~Lv~~IK~Wak~~gL~~~~~G~ 331 (563)
.+|++||||+| .+|++||+||+.|.+.||+ +|+|+++||+||+.+||++++.||
T Consensus 218 ~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~ 296 (468)
T 2b4v_A 218 GKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAM 296 (468)
T ss_dssp SSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCS
T ss_pred ccccccccccccccccccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCC
Confidence 24789999998 9999999999999999999 999999999999999999999897
Q ss_pred CcChHHHHHHHHHHhhcCC--------CCCchhhhhhhhcccCcceeeCCcccccccccccccCCCCCCCCCCCCHHHHH
Q psy10458 332 WITNFSLTLLVLFYLQSVK--------VLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLL 403 (563)
Q Consensus 332 ~LsSYsL~LLVI~fLQ~~p--------vLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~~~~~~~~~n~~sl~~LL 403 (563)
||||+|+||||||||+.. ++|+++.+... ..|.. +...|..++++||
T Consensus 297 -LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~--------------~~~~p----------~~~~n~~sLg~LL 351 (468)
T 2b4v_A 297 -LTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRY--------------PDFSP----------LYDCDPTELGRLL 351 (468)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSS--------------CCCCC----------CCCCCHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHhcCcCCCCCcccccchhhcccc--------------cCCCc----------ccccCccCHHHHH
Confidence 999999999999999743 45555543210 01100 1135778999999
Q ss_pred HHHHHhhc-cCCCCCceEEecCCCCcCCCC-------------CCCeEEecCCCC----CCCccccCCHHhHHHHHHHHH
Q psy10458 404 FGFFEFYS-QYDFNNQGISLYLGSPIPKPE-------------HGALYINNPLER----GLNVSKNVSFEELERLKVEVR 465 (563)
Q Consensus 404 ~~FF~fYs-~Fd~~~~vIsir~G~~~~K~~-------------~~~L~I~DPfe~----~~NvarnVs~~~~~~i~~ef~ 465 (563)
.+||+||| +|||.+.+||++.|+.++|.. ..+|+|+|||++ ++|+|++|+...+..|+.+|+
T Consensus 352 ~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~ 431 (468)
T 2b4v_A 352 HGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFL 431 (468)
T ss_dssp HHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCcEEEecCCcceecccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 99999999 999999999999998776531 137999999999 999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q psy10458 466 NASWTLESTANS 477 (563)
Q Consensus 466 ~A~~~L~~~~~~ 477 (563)
+|+.+|+.....
T Consensus 432 ~A~~~L~~~~~~ 443 (468)
T 2b4v_A 432 RAAQCMERFLPT 443 (468)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHhhccc
Confidence 999999976544
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3.4e-42 Score=375.44 Aligned_cols=282 Identities=20% Similarity=0.182 Sum_probs=231.4
Q ss_pred CCCHHHHHHHhcccccHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhc----------------CCCceEEEEc
Q psy10458 123 PPTEDHVRECLASCNTITQQMTTLHNI--TKMNDINTRLRFLVAYQVELALSGL----------------FPLCAIFPFG 184 (563)
Q Consensus 123 ~~~~~~l~~~L~~~~~l~~qI~~l~~~--~~pt~~e~~~R~~v~~~L~~il~~~----------------fp~~~V~pFG 184 (563)
.|++.++.. +++|..+++. +.||++|.+.|..++..|++++++. .++++|++||
T Consensus 30 ~p~~~d~~~--------t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FG 101 (514)
T 1q79_A 30 APKETDALL--------TQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFG 101 (514)
T ss_dssp CCCHHHHHH--------HHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEH
T ss_pred CCCHHHHHh--------HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEee
Confidence 466665543 4566666655 6899999999999999999999852 3689999999
Q ss_pred ceecCCCCCCCccceeeccccCCCCCCcccchhhcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeEEec
Q psy10458 185 SSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRIL 264 (563)
Q Consensus 185 S~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~ 264 (563)
|+.+|+++|+||||++|..+.... | ..++..+.+.|+. .+ ++.+++.|.
T Consensus 102 S~~lG~~~p~SDID~~~v~p~~~~-------------------~---~dff~~l~~~L~~-~~--------~v~~v~~I~ 150 (514)
T 1q79_A 102 SYRLGVHTKGADIDALCVAPRHVD-------------------R---SDFFTSFYDKLKL-QE--------EVKDLRAVE 150 (514)
T ss_dssp HHHHTCCCTTCCEEEEEEECTTSC-------------------H---HHHTTHHHHHHHT-CT--------TEEEEEEET
T ss_pred eeccCCCCCCCceeEEEecCCcCC-------------------H---HHHHHHHHHHHhc-Cc--------cCceEEEec
Confidence 999999999999999999886421 1 1345556777775 34 889999999
Q ss_pred CCCeeEEEEeecCCcceEEEeecch----------------------------hhhhhHHHHHHHhhcCCCchhHHHHHH
Q psy10458 265 GARVPIIKYNHDMSALECDLSMTNL----------------------------TALYMAELLYLFGEIDWRVRPLVFTIK 316 (563)
Q Consensus 265 ~ARVPIIKf~~~~~gi~~DIS~nN~----------------------------~gl~nS~LL~~y~~~dpr~r~Lv~~IK 316 (563)
+|+||||||.. +|++|||++++. +|++.++++..+...+++||.++++||
T Consensus 151 ~A~VPIIK~~~--~gi~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK 228 (514)
T 1q79_A 151 EAFVPVIKLCF--DGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIK 228 (514)
T ss_dssp TSSSCEEEEEE--TTEEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCcccEEEEEE--CCeeEEEEEecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 99999999996 799999999863 467777888877777889999999999
Q ss_pred HHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcCCCCCchhhhhhhhcccCcceeeCCcccccccccccccCCCCCCCCCC
Q psy10458 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQST 396 (563)
Q Consensus 317 ~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~pvLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~~~~~~~~~n~ 396 (563)
+||++|||+++..|+ ||||+|++||+++||..| .
T Consensus 229 ~Wak~Rgi~~~~~G~-lgg~s~~lLVa~~~Ql~P---------------------------------------------~ 262 (514)
T 1q79_A 229 LWAKRHNIYSNILGF-LGGVSWAMLVARTCQLYP---------------------------------------------N 262 (514)
T ss_dssp HHHHHTTCBCTTTTS-BCHHHHHHHHHHHHHHST---------------------------------------------T
T ss_pred HHHHHcCCCccccCC-ccHHHHHHHHHHHHHhCC---------------------------------------------C
Confidence 999999999999997 999999999999999742 2
Q ss_pred CCHHHHHHHHHHhhccCCCCCceE--EecCCCCcCC---C------CCCCeEEecCCCCCCCccccCCHHhHHHHHHHHH
Q psy10458 397 DSLTTLLFGFFEFYSQYDFNNQGI--SLYLGSPIPK---P------EHGALYINNPLERGLNVSKNVSFEELERLKVEVR 465 (563)
Q Consensus 397 ~sl~~LL~~FF~fYs~Fd~~~~vI--sir~G~~~~K---~------~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~ 465 (563)
.++++||..||+||++|||.+.++ .+..|....+ | ..+.|+|+||++|.+|+|+||+..++..|+.||+
T Consensus 263 ~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~ 342 (514)
T 1q79_A 263 AIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFK 342 (514)
T ss_dssp CCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHH
Confidence 357999999999999999998765 2444432111 1 1367999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCccccccccccCCcC
Q psy10458 466 NASWTLESTANSNNKPSHTPSESWGLLELFKKQNLS 501 (563)
Q Consensus 466 ~A~~~L~~~~~~~~~~~~~~~~~wgl~~ll~~~~~~ 501 (563)
+|+.+|.....+. .+ |..||+|.++-
T Consensus 343 rA~~il~~i~~~~--------~~--w~~Lf~~~~ff 368 (514)
T 1q79_A 343 QGLAITDEILLSK--------AE--WSKLFEAPNFF 368 (514)
T ss_dssp HHHHHHHHHHTTS--------SC--HHHHTCCCCHH
T ss_pred HHHHHHHHHhcCC--------CC--HHHHhCCcchh
Confidence 9999999877653 33 55899988764
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.7e-41 Score=371.17 Aligned_cols=282 Identities=17% Similarity=0.162 Sum_probs=232.5
Q ss_pred CCCHHHHHHHhcccccHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhc---------CC-------CceEEEEc
Q psy10458 123 PPTEDHVRECLASCNTITQQMTTLHNI--TKMNDINTRLRFLVAYQVELALSGL---------FP-------LCAIFPFG 184 (563)
Q Consensus 123 ~~~~~~l~~~L~~~~~l~~qI~~l~~~--~~pt~~e~~~R~~v~~~L~~il~~~---------fp-------~~~V~pFG 184 (563)
.|++.++.. +.+|.++++. +.||++|.+.|..++..|++++++. +| +++|++||
T Consensus 17 ~p~~~d~~~--------~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FG 88 (530)
T 2hhp_A 17 GATAAENKL--------NDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYG 88 (530)
T ss_dssp CCCHHHHHH--------HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEH
T ss_pred CCChHHhhh--------hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEec
Confidence 467666544 5667776666 7899999999999999999999862 23 79999999
Q ss_pred ceecCCCCCCCccceeeccccCCCCCCcccchhhcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeEEec
Q psy10458 185 SSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRIL 264 (563)
Q Consensus 185 S~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~ 264 (563)
|+.+|+++|+||||++|..|.... | ..++..+.+.|+. .+ ++.+++.|.
T Consensus 89 Sy~lG~~~p~SDID~~v~~p~~~~-------------------~---~dff~~l~~~L~~-~~--------~v~~v~~I~ 137 (530)
T 2hhp_A 89 SYRLGVHGPGSDIDTLVVVPKHVT-------------------R---EDFFTVFDSLLRE-RK--------ELDEIAPVP 137 (530)
T ss_dssp HHHHTCCCTTCCEEEEEEECTTCC-------------------H---HHHHHHHHHHHHT-CT--------TEEEEEEET
T ss_pred ccccCCCCCCCceeEEEecCCcCC-------------------H---HHHHHHHHHHHhc-CC--------CCceEEEec
Confidence 999999999999999999886421 1 2356677788875 34 889999999
Q ss_pred CCCeeEEEEeecCCcceEEEeecch----------------------------hhhhhHHHHHHHhhcCCCchhHHHHHH
Q psy10458 265 GARVPIIKYNHDMSALECDLSMTNL----------------------------TALYMAELLYLFGEIDWRVRPLVFTIK 316 (563)
Q Consensus 265 ~ARVPIIKf~~~~~gi~~DIS~nN~----------------------------~gl~nS~LL~~y~~~dpr~r~Lv~~IK 316 (563)
+|+||||||.. +|++|||++++. +|++.++++..+...+++||.++++||
T Consensus 138 ~A~VPIIK~~~--~gi~vDL~f~~~~~~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK 215 (530)
T 2hhp_A 138 DAFVPIIKIKF--SGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIK 215 (530)
T ss_dssp TSSSCEEEEEE--TTEEEEEEEEECSSSCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCcccEEEEEE--CCEeeEEEEeccccccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 99999999995 899999999764 577888888888877899999999999
Q ss_pred HHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcCCCCCchhhhhhhhcccCcceeeCCcccccccccccccCCCCCCCCCC
Q psy10458 317 KWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQST 396 (563)
Q Consensus 317 ~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~pvLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~~~~~~~~~n~ 396 (563)
.||++|||+++..|+ ||||+|+|||+++||..| .
T Consensus 216 ~Wak~Rgl~~~~~G~-lgg~~~~~LVa~~lQl~P---------------------------------------------~ 249 (530)
T 2hhp_A 216 LWAQRRAVYANIFGF-PGGVAWAMLVARICQLYP---------------------------------------------N 249 (530)
T ss_dssp HHHHHTTCCCGGGTS-CCHHHHHHHHHHHHHHST---------------------------------------------T
T ss_pred HHHHHcCCCcccccC-CcHHHHHHHHHHHHhcCC---------------------------------------------C
Confidence 999999999999997 999999999999999742 2
Q ss_pred CCHHHHHHHHHHhhccCCCCCceEE--ecCCCCc-----CCC----CCCCeEEecCCCCCCCccccCCHHhHHHHHHHHH
Q psy10458 397 DSLTTLLFGFFEFYSQYDFNNQGIS--LYLGSPI-----PKP----EHGALYINNPLERGLNVSKNVSFEELERLKVEVR 465 (563)
Q Consensus 397 ~sl~~LL~~FF~fYs~Fd~~~~vIs--ir~G~~~-----~K~----~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~ 465 (563)
.++++||..||+||++|||.+.++. +..|... ++. ....|+|+||++|.+|+|+||+..++..|+.||+
T Consensus 250 ~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~ 329 (530)
T 2hhp_A 250 ACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFV 329 (530)
T ss_dssp CCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHH
Confidence 3579999999999999999975543 2223321 111 1578999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCccccccccccCCcC
Q psy10458 466 NASWTLESTANSNNKPSHTPSESWGLLELFKKQNLS 501 (563)
Q Consensus 466 ~A~~~L~~~~~~~~~~~~~~~~~wgl~~ll~~~~~~ 501 (563)
+|+.+|....... .+ |..||+|.++-
T Consensus 330 rA~~ll~~i~~~~--------~~--w~~Lf~~~~ff 355 (530)
T 2hhp_A 330 RGVQITNDIFSNK--------KS--WANLFEKNDFF 355 (530)
T ss_dssp HHHHHHHHHHTTS--------SC--HHHHTCCCCHH
T ss_pred HHHHHHHHHhcCC--------CC--HHHHcCCCChH
Confidence 9999999876542 33 55789887653
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.53 E-value=2.3e-13 Score=144.91 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCC-CccceeeccccCCCCCCcccchh
Q psy10458 139 ITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLG-CDLDLVLQLDLQSQGDNDQCRLM 217 (563)
Q Consensus 139 l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~-SDLDl~l~~~~~~~~~~~~~~l~ 217 (563)
+++-+..+.+.+.|+++|.+.-..+.+.|.+.+++ ++ +.+...||++.|+++++ |||||++.++....
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~-~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~--------- 71 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LG-VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS--------- 71 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HT-CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC---------
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CC-CeEEEeccccCCCcCCCCCCceEEEEcCCCCC---------
Confidence 45667789999999999988888888888888887 44 79999999999999987 89999999976411
Q ss_pred hcccccCCcchHHHH-HHHHHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEe--ec------c
Q psy10458 218 FHCKSSLGSERSQTL-RHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLS--MT------N 288 (563)
Q Consensus 218 ~~~k~~~~~~R~~~~-~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS--~n------N 288 (563)
+.+.. ..++.+.++ .+ .+ .+..|..|-|.... .|+++||- +. .
T Consensus 72 ----------~e~l~~~~l~~~~e~----l~--------~~----~~~ya~hpyV~~~f--~g~~vDVVP~y~v~~g~~~ 123 (437)
T 1r89_A 72 ----------KEELRERGLEIGKAV----LD--------SY----EIRYAEHPYVHGVV--KGVEVDVVPCYKLKEPKNI 123 (437)
T ss_dssp ----------HHHHHHHHHHHHHHH----SS--------SE----EEEESSSEEEEEEE--TTEEEEEEEEECCSSSSCC
T ss_pred ----------HHHHHHHHHHHHHHH----HH--------Hh----hhhccCCceEEEEe--cceEEEEEEEEEccCCccc
Confidence 11111 112222332 22 22 24466778887764 68999983 22 1
Q ss_pred hhhhhhHHHHHHHhhcCCC-chhHHHHHHHHHHHcCCCCC--CCCCCcChHHHHHHHHHHhhcCCCCCchhhhhhhhccc
Q psy10458 289 LTALYMAELLYLFGEIDWR-VRPLVFTIKKWAKDINLTNP--TPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLK 365 (563)
Q Consensus 289 ~~gl~nS~LL~~y~~~dpr-~r~Lv~~IK~Wak~~gL~~~--~~G~~LsSYsL~LLVI~fLQ~~pvLP~Lq~l~~~~~~~ 365 (563)
..++.-|.+-..|...... ++.+|+++|+|.+..|++++ ..+| ++||.+-||+++|--.
T Consensus 124 ~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~ygse~k~~g-fSsYllELLv~~yG~f----------------- 185 (437)
T 1r89_A 124 KSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIYGAEYKVRG-FSGYLCELLIVFYGSF----------------- 185 (437)
T ss_dssp CSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCBCCSTTTCC-BCHHHHHHHHHHHSSH-----------------
T ss_pred cccccCcHHHHHHHHhhhhhhhhHHHHHHHHHHhCCcCCCcccCCC-CCHHHHHHHHHHHcCH-----------------
Confidence 2455556677777654222 88999999999999999976 4577 9999999999984210
Q ss_pred CcceeeCCcccccccccccccCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCceEEecCCCCcCCCCCCCeEEecCCCCC
Q psy10458 366 DRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERG 445 (563)
Q Consensus 366 d~~~~~~g~d~~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs~Fd~~~~vIsir~G~~~~K~~~~~L~I~DPfe~~ 445 (563)
..+|..+.+|.. ...|.+..+ ...-..||.|.||.||.
T Consensus 186 ----------------------------------~~vl~~~~~w~~-----~~~Id~~~~---~~~~~~PlvViDPvDp~ 223 (437)
T 1r89_A 186 ----------------------------------LETVKNARRWTR-----RTVIDVAKG---EVRKGEEFFVVDPVDEK 223 (437)
T ss_dssp ----------------------------------HHHHHHHTTCCT-----TEEEEGGGT---EEEECSSCEEEETTEEE
T ss_pred ----------------------------------HHHHHHHHHhCC-----CeEEecCCC---cccCCCCEEEECCCCCC
Confidence 112222221111 123333211 01115789999999999
Q ss_pred CCccccCCHHhHHHHHHHHHHHHH
Q psy10458 446 LNVSKNVSFEELERLKVEVRNASW 469 (563)
Q Consensus 446 ~NvarnVs~~~~~~i~~ef~~A~~ 469 (563)
+|||+++|...+.+|..+++....
T Consensus 224 rNVAa~~s~~~~~~~~~~a~~~l~ 247 (437)
T 1r89_A 224 RNVAANLSLDNLARFVHLCREFME 247 (437)
T ss_dssp EETTTTCCHHHHHHHHHHHHHHHH
T ss_pred CchhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998887764
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.33 E-value=3.6e-11 Score=125.83 Aligned_cols=276 Identities=15% Similarity=0.124 Sum_probs=152.9
Q ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhc-CCC-------ceEEEEcceecCCCCCC-CccceeeccccCCCCC
Q psy10458 141 QQMTTLH-NITKMNDINTRLRFLVAYQVELALSGL-FPL-------CAIFPFGSSVNNFGKLG-CDLDLVLQLDLQSQGD 210 (563)
Q Consensus 141 ~qI~~l~-~~~~pt~~e~~~R~~v~~~L~~il~~~-fp~-------~~V~pFGS~~~Gl~~~~-SDLDl~l~~~~~~~~~ 210 (563)
+++..|+ +.++|++++...-...++.|...|++. |.+ ..+...||+..|+++.+ |||||++.++....
T Consensus 9 ~~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~-- 86 (349)
T 1px5_A 9 RDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTS-- 86 (349)
T ss_dssp GGHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSC--
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCc--
Confidence 4566666 788999998876677778888888873 432 36788999999999886 89999999986311
Q ss_pred CcccchhhcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCce-eeEEe-cCCCeeE-EEE--ee--cCCcceEE
Q psy10458 211 NDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCS-QVKRI-LGARVPI-IKY--NH--DMSALECD 283 (563)
Q Consensus 211 ~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~-~V~~I-~~ARVPI-IKf--~~--~~~gi~~D 283 (563)
++. .-....++++.+.+.|..+.+.. ++. +.+.. ..-+.|- |.+ .+ ...|+++|
T Consensus 87 -------~~~------~~~~~~~~l~~i~~~L~~~~~~~------~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vD 147 (349)
T 1px5_A 87 -------FED------QLRRRGEFIQEIRRQLEACQREQ------KFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFD 147 (349)
T ss_dssp -------TTH------HHHTHHHHHHHHHHHHHHHHHHC------CCSSEEEECCC------CCEEEEEETTTTEEEEEE
T ss_pred -------hhh------HHhhHHHHHHHHHHHHHHhhhhh------ccccceeEecccccCCceEEEEEEccCcCCceEEE
Confidence 110 00011345666666666532200 111 22211 0112442 444 32 13578999
Q ss_pred Ee--ecchh---------------hh--------------hhHHHHHHHhhc-CCCchhHHHHHHHHHHHcCCCCCCCCC
Q psy10458 284 LS--MTNLT---------------AL--------------YMAELLYLFGEI-DWRVRPLVFTIKKWAKDINLTNPTPGR 331 (563)
Q Consensus 284 IS--~nN~~---------------gl--------------~nS~LL~~y~~~-dpr~r~Lv~~IK~Wak~~gL~~~~~G~ 331 (563)
|- +.+.. .+ ..+++-..|... ...++.|++++|+|.+.++... ..++
T Consensus 148 VvPa~~~l~~~~~~~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~~-~~~~ 226 (349)
T 1px5_A 148 VLPAFDALGQWTPGYKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTH-GNKL 226 (349)
T ss_dssp EEEEECSSCSCCTTSCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTTC-SSCC
T ss_pred EEEehhhhcccccccCCChHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhcc-cCCC
Confidence 63 33210 01 113444444333 3368999999999999886532 2344
Q ss_pred CcChHHHHHHHHHHhhcCCCCCchhhhhhhhcccCcceeeCCcccccccccccccCCCCCCCCCCCCHHHHHHHHHHhhc
Q psy10458 332 WITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS 411 (563)
Q Consensus 332 ~LsSYsL~LLVI~fLQ~~pvLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs 411 (563)
++||+|.||+++...... ....-++.+-|..+|++-+
T Consensus 227 -~ssy~lELL~~~a~e~~~------------------------------------------~~~~~~~~~~f~~vle~l~ 263 (349)
T 1px5_A 227 -PPQYALELLTVYAWEQGS------------------------------------------RKTDFSTAQGFQTVLELVL 263 (349)
T ss_dssp -CCHHHHHHHHHHHHHHHT------------------------------------------CCSSCCHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHhCC------------------------------------------CccCCCHHHHHHHHHHHHH
Confidence 899999999999776521 0113356777888888776
Q ss_pred cCCCCCceEEecCCCCcCC-----------C-CCCCeEEecCCCCCCCccccCCHHhHHHHHHHHHHHHHHHHhhhcCCC
Q psy10458 412 QYDFNNQGISLYLGSPIPK-----------P-EHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNN 479 (563)
Q Consensus 412 ~Fd~~~~vIsir~G~~~~K-----------~-~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~~A~~~L~~~~~~~~ 479 (563)
.+. . +++.=...... + ...+..|.||.+|.+|||.. +...+..+. ..|...|++......
T Consensus 264 ~~~--~--~~i~w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~---~~A~~~l~~~~~~~~ 335 (349)
T 1px5_A 264 KHQ--K--LCIFWEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLA---QEARVWLGYPCCKNL 335 (349)
T ss_dssp TGG--G--CEECCCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHH---HHHHHHTTSGGGBCT
T ss_pred hCC--c--cceeeeccccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHH---HHHHHHHhchhhccC
Confidence 542 1 22211111110 0 12345799999999999987 777777776 444455555543321
Q ss_pred CCCCCCCCcccc
Q psy10458 480 KPSHTPSESWGL 491 (563)
Q Consensus 480 ~~~~~~~~~wgl 491 (563)
...+-.+|..
T Consensus 336 --~~~~~~~w~~ 345 (349)
T 1px5_A 336 --DGSLVGAWTM 345 (349)
T ss_dssp --TSCBCCCCCC
T ss_pred --CCCcCccCCC
Confidence 1234567764
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.44 E-value=2.6e-05 Score=80.48 Aligned_cols=245 Identities=14% Similarity=0.107 Sum_probs=165.2
Q ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcC--CC------ceEEEEcceecCCCCCCC-ccceeeccccCCC
Q psy10458 138 TITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLF--PL------CAIFPFGSSVNNFGKLGC-DLDLVLQLDLQSQ 208 (563)
Q Consensus 138 ~l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~f--p~------~~V~pFGS~~~Gl~~~~S-DLDl~l~~~~~~~ 208 (563)
.+++.|.+-...+.||++|+..-..+++.|+.++.... |+ ..|...||+..|+.+.|. |+|++|++...+.
T Consensus 26 ~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~lPT 105 (364)
T 4at7_A 26 SFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT 105 (364)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSCCB
T ss_pred HHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCCCC
Confidence 46778888899999999999888888888888887632 33 369999999999999875 9999998876421
Q ss_pred CCCcccchhhcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeE------EecCCCeeEEEEee-------
Q psy10458 209 GDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVK------RILGARVPIIKYNH------- 275 (563)
Q Consensus 209 ~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~------~I~~ARVPIIKf~~------- 275 (563)
....+..+..|.+-|....|. ....+. .|.++. +.|++.-
T Consensus 106 -------------------~e~v~~L~~kV~e~L~~q~~~-------e~~~~~~~e~~~~I~~~~-~~v~i~It~tsp~l 158 (364)
T 4at7_A 106 -------------------LEAVAALGNKVVESLRAQDPS-------EVLTMLTNETGFEISSSD-ATVKILITTVPPNL 158 (364)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHCTT-------SCCEEEEETTEEEEECSS-CEEEEEEEECHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhhhhccc-------cceeeccCcceEEEecCC-CcEEEEEEeCChhh
Confidence 123345566667767655431 111100 122222 1122211
Q ss_pred ----cCCcceEEEeecchhhhhhHHHHHHHhhcCCCchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcCCC
Q psy10458 276 ----DMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKV 351 (563)
Q Consensus 276 ----~~~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~pv 351 (563)
...-+....+..+..+++.++++..-+. ..-++.+++++|...++. +..++ |+.|++-||+.+-+-..+
T Consensus 159 rk~dp~~~Ld~~~cl~aLaalRhAkWfq~na~-~s~v~~lIRIlkDlc~R~----~~w~p-L~~waLELL~~~Ai~s~~- 231 (364)
T 4at7_A 159 RKLDPELHLDIKVLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRF----PGFEP-LTPWILDLLGHYAVMNNP- 231 (364)
T ss_dssp HTCCTTTBCCHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC----GGGTT-CCHHHHHHHHHHHHHSST-
T ss_pred ccCChhHhcCHHHHHHHHHHhhhhHHHHhhcc-ccccceeehhhHHHHHhc----CCcCC-CCHHHHHHHHHHHHhcCC-
Confidence 1122333345556788899999886543 456788999999966664 22345 999999999988665421
Q ss_pred CCchhhhhhhhcccCcceeeCCcccccccccccccCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCceEEecCCCCcCC
Q psy10458 352 LPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPK 430 (563)
Q Consensus 352 LP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs-~Fd~~~~vIsir~G~~~~K 430 (563)
.....++++.|..+|+..+ -+=+. .
T Consensus 232 -----------------------------------------~~~~l~~~~afRRVLElLAsGillp-------------~ 257 (364)
T 4at7_A 232 -----------------------------------------TRQPLALNVAYRRCLQILAAGLFLP-------------G 257 (364)
T ss_dssp -----------------------------------------TSSCCCHHHHHHHHHHHHHTTTTST-------------T
T ss_pred -----------------------------------------CCCCcCHHHHHHHHHHHHHhCcccC-------------C
Confidence 1234678999999999998 22111 1
Q ss_pred CCCCCeEEecCCCC-CCCccccCCHHhHHHHHHHHHHHHHHHHhh
Q psy10458 431 PEHGALYINNPLER-GLNVSKNVSFEELERLKVEVRNASWTLEST 474 (563)
Q Consensus 431 ~~~~~L~I~DPfe~-~~NvarnVs~~~~~~i~~ef~~A~~~L~~~ 474 (563)
.--|.||++. ..++...++..+.+.|....+.+.+++.-.
T Consensus 258 ----~~Gi~DPCE~~~~~v~~~lt~qq~e~it~sAQ~~LRllafg 298 (364)
T 4at7_A 258 ----SVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHG 298 (364)
T ss_dssp ----BCCCBCTTSSSCCBGGGGSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCCCcCCCCCCCcchhccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 1125699998 578888899888888888888888877654
No 13
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.41 E-value=9.2e-05 Score=62.64 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEcceecCCCCCC-Cccceeecccc
Q psy10458 163 VAYQVELALSGLFPLCAIFPFGSSVNNFGKLG-CDLDLVLQLDL 205 (563)
Q Consensus 163 v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~-SDLDl~l~~~~ 205 (563)
+++.+.+.+++.++...++.|||++.|-+.++ ||||+++..+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 35667788888898899999999999999999 99999998764
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.36 E-value=0.00018 Score=62.79 Aligned_cols=41 Identities=32% Similarity=0.385 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeecccc
Q psy10458 165 YQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDL 205 (563)
Q Consensus 165 ~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~ 205 (563)
+.|.+++++.++...|+.|||++.|-+.++||||++|..+.
T Consensus 15 ~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 15 AIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp HHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred HHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 45677777777888999999999999999999999998865
No 15
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.11 E-value=0.018 Score=59.80 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=69.4
Q ss_pred CchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcCCCCCchhhhhhhhcccCcceeeCCccccccccccccc
Q psy10458 307 RVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQ 386 (563)
Q Consensus 307 r~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~pvLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~ 386 (563)
....|++++|..++.. +..++ |+.|+|-||+.+-+-..
T Consensus 227 s~~ilIRilkdlc~R~----~~~~p-L~~waLELL~~~ai~s~------------------------------------- 264 (383)
T 4at7_B 227 SCVIVIRVLRDLCTRV----PTWGP-LRGWPLELLCEKSIGTA------------------------------------- 264 (383)
T ss_dssp THHHHHHHHHHHHHHC----GGGGG-GTTHHHHHHHHHHHHTS-------------------------------------
T ss_pred CceEEeehhhHHHHhc----CCcCC-CcHhHHHHHHHHHhhCC-------------------------------------
Confidence 4557777888755553 12244 78888888887755421
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhccCCCCCceEEecCCCCcCCCCCCCeEEecCCC--CCCCccccCCHHhHHHHHHHH
Q psy10458 387 FHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLE--RGLNVSKNVSFEELERLKVEV 464 (563)
Q Consensus 387 ~~~~~~~~n~~sl~~LL~~FF~fYs~Fd~~~~vIsir~G~~~~K~~~~~L~I~DPfe--~~~NvarnVs~~~~~~i~~ef 464 (563)
....++++.|..+|+..+..-+- .| .--|.||+| +.+|++ +.+..+.+.|....
T Consensus 265 -------~~~l~~~~afRRVLEllasG~lL-------p~---------~pgI~DPcEk~pt~~~~-~lt~qq~e~it~sA 320 (383)
T 4at7_B 265 -------NRPMGAGEALRRVLECLASGIVM-------PD---------GSGIYDPCEKEATDAIG-HLDRQQREDITQSA 320 (383)
T ss_dssp -------SSCCCHHHHHHHHHHHHHTTTTS-------TT---------SCCCBCTTCSSCCBTTT-TCCHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHHHhcCccc-------CC---------CCCccCCCCCCCccccc-cCCHHHHHHHHHHH
Confidence 11356899999999999832211 11 123679999 777777 78888889999888
Q ss_pred HHHHHHHHhh
Q psy10458 465 RNASWTLEST 474 (563)
Q Consensus 465 ~~A~~~L~~~ 474 (563)
+.+.+++.-.
T Consensus 321 Q~~LR~~afg 330 (383)
T 4at7_B 321 QHALRLAAFG 330 (383)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhC
Confidence 8888877653
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.58 E-value=0.0015 Score=56.80 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHHHHH---hcCCC-ceEEEEcceecCCCCCCCccceeecccc
Q psy10458 162 LVAYQVELALS---GLFPL-CAIFPFGSSVNNFGKLGCDLDLVLQLDL 205 (563)
Q Consensus 162 ~v~~~L~~il~---~~fp~-~~V~pFGS~~~Gl~~~~SDLDl~l~~~~ 205 (563)
.+.+.+++++. +.+|+ ..+..|||++.|-+.++||||++|..+.
T Consensus 14 ~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 14 RMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 34444444433 34665 5799999999999999999999998765
No 17
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.58 E-value=0.0013 Score=55.66 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCceEEEEcceecCCCCCCCccceeecccc
Q psy10458 166 QVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDL 205 (563)
Q Consensus 166 ~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~ 205 (563)
.++.++++ ++-..++.|||++.|-+.++||||+++..+.
T Consensus 15 ~i~~l~~~-~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 15 AVLSLCAR-HGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHH-HTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHH-cCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 34444444 4557899999999999999999999998764
No 18
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.79 E-value=0.0035 Score=52.28 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=37.7
Q ss_pred cceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 38 QRSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 38 ~rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
.|.+| ||+|.++++...+| ||.|||.+.+++.+++..-. ....+..|+|+
T Consensus 24 L~~lF~q~G~V~~~~l~~~kG---faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 24 LRTLCMQHGPLVSFHPYLNQG---IALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp HHHHHHHHSCEEEEEEETTTT---EEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred HHHHHHhhCCEEEEEEcCCCc---EEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34445 99999999999899 99999999999999987432 23334445554
No 19
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.63 E-value=0.0078 Score=49.68 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=36.6
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++..+...|. ||.|||.+.+++.+++.-..+..++..+.|+
T Consensus 32 ~G~v~~v~~~~~~g~--~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 32 FGPVASVVMDKDKGV--FAIVEMGDVGAREAVLSQSQHSLGGHRLRVR 77 (94)
T ss_dssp TSCEEEEEECSSSCC--EEEEEESSHHHHHHHHTCSCCEETTEECCCB
T ss_pred cCCeEEEEEcCCCCc--EEEEEECCHHHHHHHHhcCCeEECCEEEEEE
Confidence 999999977766674 9999999999999999833455556666665
No 20
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.49 E-value=0.024 Score=48.05 Aligned_cols=70 Identities=14% Similarity=0.277 Sum_probs=52.1
Q ss_pred CCCCccccchHHHHHHHHhhhcceee-------------------eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh
Q psy10458 17 PSGNVLSKYFVPSIEYRRLEAQRSIL-------------------FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 17 ~~~~~~~~~~~~~~~~r~~qa~rsv~-------------------~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~ 77 (563)
++.+.+..+++++... .....|+|| ||+|.++.+...+| ||.|+|.+.+++.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g---~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 5 SSGNTKQLRFEDVVNQ-SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG---YSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp CCCCSCSCCHHHHHHH-SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTT---EEEEEESSHHHHHHHHHH
T ss_pred cccccccCCccccccC-CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCC---EEEEEECCHHHHHHHHHH
Confidence 4556677777776554 555678888 99999998877766 999999999999999975
Q ss_pred c-CccCCCcceecc
Q psy10458 78 C-GHLDKSQVIPVR 90 (563)
Q Consensus 78 ~-~~~~~~~~~~~k 90 (563)
- .+..++..|.|+
T Consensus 81 l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 81 VNGTTIEGHVVKCY 94 (109)
T ss_dssp HTTCEETTEECEEE
T ss_pred cCCCEECCcEEEEE
Confidence 3 344455555554
No 21
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.96 E-value=0.016 Score=57.02 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCC-ceEEEEcceecCCCCCCCccceeeccccC
Q psy10458 166 QVELALSGLFPL-CAIFPFGSSVNNFGKLGCDLDLVLQLDLQ 206 (563)
Q Consensus 166 ~L~~il~~~fp~-~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~ 206 (563)
.+.+.+.+.+++ ..|..|||++-|-..++||||++|..+..
T Consensus 28 ~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 28 RWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred HHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 333444556775 68999999999999999999999998763
No 22
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.77 E-value=0.028 Score=47.68 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=37.7
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceeccCc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSP 92 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k~r 92 (563)
||+|.++.+-.++ | ..-||.|||.+.+++.+++....+..++..+.|+..
T Consensus 35 ~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 35 KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 9999988775533 1 124999999999999999986556666667777643
No 23
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.26 E-value=0.021 Score=56.47 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCC--CceEEEEcceecCCCCCCCccceeeccccC
Q psy10458 163 VAYQVELALSGLFP--LCAIFPFGSSVNNFGKLGCDLDLVLQLDLQ 206 (563)
Q Consensus 163 v~~~L~~il~~~fp--~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~ 206 (563)
+++.+...+.+.++ -..|..|||++-|-+.++||||++|..+..
T Consensus 15 ~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 15 IVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 34445555555666 367999999999999999999999987653
No 24
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.06 E-value=0.048 Score=43.64 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=34.3
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc--CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC--GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~--~~~~~~~~~~~ 89 (563)
||+|.++.+...+| ||.|+|.+.+++.+++..- ....++..+.|
T Consensus 36 ~G~i~~~~~~~~kg---~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 36 FGEIRTITVVQRQQ---CAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp TSCEEEEEEEGGGT---EEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCEeEEEEECCCC---EEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 99999999887777 9999999999999999853 33444444444
No 25
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.02 E-value=0.026 Score=48.46 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=36.8
Q ss_pred ceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC---ccCCCcceecc
Q psy10458 39 RSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG---HLDKSQVIPVR 90 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~---~~~~~~~~~~k 90 (563)
|.+| ||+|.++.+-.++| ||.|||.+.+++.+++..-. ...++..|.|.
T Consensus 34 ~~lF~~fG~V~~v~i~~~kG---faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 34 ISLGLPFGKVTNLLMLKGKN---QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp HHHHHHHCCEEEEEEETTTT---EEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred HHHHHhcCCEEEEEEEcCCC---EEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4556 99999998877777 99999999999999998532 23344444443
No 26
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.80 E-value=0.03 Score=47.61 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=31.6
Q ss_pred ceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc
Q psy10458 39 RSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~ 78 (563)
+.+| ||+|.++.+-+.+| ||.|||.+.+++.++++.-
T Consensus 39 ~~lF~~fG~V~~v~i~~~kg---~AFVef~~~~~A~~Av~~l 77 (100)
T 3r27_A 39 VEALQEFGPISYVVVMPKKR---QALVEFEDVLGACNAVNYA 77 (100)
T ss_dssp HHHHGGGSCEEEEEEETTTT---EEEEEESSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEEcCCC---EEEEEECCHHHHHHHHHHh
Confidence 4445 99999998877777 9999999999999998763
No 27
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.76 E-value=0.084 Score=44.83 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=34.6
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC---ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG---HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~---~~~~~~~~~~k 90 (563)
||.|.++.+-..+| ||.|||.+.+++.+++..-. ....+..|.|.
T Consensus 39 fG~V~~v~i~~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 39 FGTICYVMMMPFKR---QALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp TSCEEEEEEETTTT---EEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEEEECCCC---EEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 99999999877667 99999999999999987532 23444455543
No 28
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.63 E-value=0.036 Score=46.93 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=29.1
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~ 77 (563)
||.|.++.+-..+| ||.|||.+.+++.+++..
T Consensus 39 fG~v~~v~i~~~kg---~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 39 FGKVTNILMLKGKN---QAFLELATEEAAITMVNY 70 (101)
T ss_dssp TSCEEEEEEETTTT---EEEEEESSHHHHHHHHHH
T ss_pred cCCEEEEEEECCCC---EEEEEECCHHHHHHHHHH
Confidence 99999998877767 999999999999999874
No 29
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.41 E-value=0.05 Score=47.17 Aligned_cols=44 Identities=11% Similarity=0.298 Sum_probs=34.0
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC---ccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG---HLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~---~~~~~~~~~~ 89 (563)
||+|.++.+-+.+| ||.|||.+.+++.+++..-. ....+..|.|
T Consensus 50 fG~V~~v~i~~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 50 YGKIKNYILMRMKS---QAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp TSCCSEEEEETTTT---EEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred cCCEEEEEEecCCC---EEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 99999999877767 99999999999999988532 2234444544
No 30
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.20 E-value=0.062 Score=45.51 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=31.0
Q ss_pred hcceee--eeecceEEEe-ecCCceeEEEEEeCCHHHHHHHHhhc
Q psy10458 37 AQRSIL--FGTVQSMHHY-TLPGQTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 37 a~rsv~--~G~i~~~~~~-~~~~~~~~~~vef~~~~~~~~~~~~~ 78 (563)
..|.+| ||+|..+.+- ..+| ||.|||.+.+++..++...
T Consensus 33 ~L~~~F~~~G~V~~v~i~~~~rG---faFVeF~~~~~A~~Ai~~~ 74 (100)
T 2d9o_A 33 VLLRLLQKYGEVLNLVLSSKKPG---TAVVEFATVKAAELAVQNE 74 (100)
T ss_dssp HHHHHHHTTSCEEEEEEESSSSS---EEEEEESCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCEEEEEEccCCCC---EEEEEECCHHHHHHHHHhc
Confidence 345566 9999998875 2334 9999999999999999873
No 31
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.16 E-value=0.094 Score=43.34 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=35.7
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-+++| ||.|||.+.+++.+++..- .+..++..+.|+
T Consensus 39 ~G~i~~v~~~~~kg---~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 39 YGKAGEVFIHKDKG---FGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp TCCCSEEEEETTTT---EEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCeEEEEEecCCC---EEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 99999999877767 9999999999999998753 344455556554
No 32
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.10 E-value=0.047 Score=47.87 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=35.0
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC---ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG---HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~---~~~~~~~~~~k 90 (563)
||.|.++.+-.++| ||.|||.+.+++.+++..-. ....+..|.|.
T Consensus 55 fG~V~~v~i~~~kG---~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 55 FGKVTNLLMLKGKN---QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp TSCCCEEEEEGGGT---EEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred cCCEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 99999998877777 99999999999999997532 33445455553
No 33
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=93.09 E-value=0.089 Score=42.32 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=34.3
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++..-.+. |+ .-||.|||.+.+++.+++.-..+..++..|.|+
T Consensus 30 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 30 CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI 80 (89)
T ss_dssp GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEE
Confidence 9999988765543 22 359999999999999999433444555555554
No 34
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.06 E-value=0.047 Score=45.11 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=34.8
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+...+| ||.|+|.+.+++.+++..- .+..++..|.|.
T Consensus 37 ~G~i~~v~i~~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 37 FGNIIDLSMDPPRN---CAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp TSCEEEEEEETTTT---EEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCEEEEEecCCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 99999999876667 9999999999999999753 233444455554
No 35
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.78 E-value=0.049 Score=46.32 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=36.7
Q ss_pred cceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC---ccCCCcceec
Q psy10458 38 QRSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG---HLDKSQVIPV 89 (563)
Q Consensus 38 ~rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~---~~~~~~~~~~ 89 (563)
.|.+| ||+|.++.+-.++| ||.|||.+.+++.+++..-. ....+..|.|
T Consensus 33 L~~lF~~fG~V~~v~i~~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 33 LLQLVEPFGVISNHLILNKIN---EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp HHTTTGGGSCEEEEEECSSSS---CEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred HHHHHHhcCCEEEEEEEcCCC---EEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 44577 99999998866666 99999999999999988532 2234444554
No 36
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.77 E-value=0.099 Score=40.78 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.4
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++..-.++ |+ .-||.|||.+.+++.+++....+..++..+.|+
T Consensus 24 ~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 74 (77)
T 1uaw_A 24 FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 74 (77)
T ss_dssp TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEE
T ss_pred cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEE
Confidence 8999988775543 21 249999999999999999877666666566654
No 37
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=92.73 E-value=0.12 Score=41.51 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=35.6
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+-.+. |+ .-||.|+|.+.+++.+++....+..++..|.|+
T Consensus 35 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 35 FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999987765543 32 359999999999999999765555556555554
No 38
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.11 Score=42.92 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=34.1
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-..+| ||.|||.+.+++.+++..- ....++..+.|+
T Consensus 51 ~G~i~~~~~~~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 51 FGFILDFKHYPEKG---CCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp TSCCSEEEEETTTT---EEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCEEEEEEecCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 99999998877667 9999999999999998753 233344444443
No 39
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=92.60 E-value=0.063 Score=44.54 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=34.8
Q ss_pred eeecceEEEeec-CCceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTL-PGQTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~-~~~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++.+-.+ +| ||.|||.+.+++.+++.. .....++..+.|+
T Consensus 24 ~G~i~~v~i~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 24 YGPLRTVWIARNPPG---FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp HCCCSEEEEESSSSS---EEEEECSSHHHHHHHHHHHHHSCSSSCCCEEE
T ss_pred cCCeEEEEEeeCCCC---EEEEEECCHHHHHHHHHHHCCCeECCcEEEEE
Confidence 899999887665 45 999999999999999985 2344455556665
No 40
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=92.43 E-value=0.14 Score=40.97 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=32.4
Q ss_pred ecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 45 TVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 45 ~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
+|.++....++| ||.|||.+.+++.+++.-..+..++..+.|+
T Consensus 43 ~v~~~~~~~~kg---~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 43 PVLAVQINQDKN---FAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 85 (87)
T ss_dssp SEEEEEECSSSS---EEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred cceEEEecCCCc---EEEEEcCCHHHHHHHHhcCCCEECCeEEEEe
Confidence 888888877667 9999999999999999333344555555554
No 41
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=92.41 E-value=0.11 Score=49.14 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=45.1
Q ss_pred HHHhhhcceee-------------------eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 32 YRRLEAQRSIL-------------------FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 32 ~r~~qa~rsv~-------------------~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
.+.+...|+|| ||+|.+|.+-... | ..-||.|||.+.+++.+++....+..+|..|.|+
T Consensus 103 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 103 YKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred hhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 45666779999 9999987664432 2 2359999999999999999876556666667666
Q ss_pred Cc
Q psy10458 91 SP 92 (563)
Q Consensus 91 ~r 92 (563)
..
T Consensus 183 ~~ 184 (193)
T 2voo_A 183 FK 184 (193)
T ss_dssp ET
T ss_pred Eh
Confidence 43
No 42
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=92.33 E-value=0.1 Score=41.44 Aligned_cols=42 Identities=12% Similarity=0.255 Sum_probs=32.2
Q ss_pred hhcceee--eeecceEEEeecCCc-eeEEEEEeCCHHHHHHHHhh
Q psy10458 36 EAQRSIL--FGTVQSMHHYTLPGQ-THFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 36 qa~rsv~--~G~i~~~~~~~~~~~-~~~~~vef~~~~~~~~~~~~ 77 (563)
+..|.+| ||+|.++.+....|+ .-||.|||.+.+++.+++..
T Consensus 22 ~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 22 NVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 3445566 999999887643332 24999999999999999975
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.30 E-value=0.19 Score=41.38 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=35.1
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|..+.+-.++ | ..-||.|||.+.+++.++++-..+..++..|.|+
T Consensus 34 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 34 FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 9999998775543 2 2359999999999999999744445555556664
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.29 E-value=0.13 Score=42.90 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=35.7
Q ss_pred eeecceEEEeec---CCc-eeEEEEEeCCHHHHHHHHhhc--CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTL---PGQ-THFVIVEMKDSQVTRRILNKC--GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~---~~~-~~~~~vef~~~~~~~~~~~~~--~~~~~~~~~~~k 90 (563)
||+|.++.+..+ .|. .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 39 FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 999999888665 221 249999999999999999864 445555556554
No 45
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.25 E-value=0.07 Score=43.96 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=34.2
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCC--Ccceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDK--SQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~--~~~~~~k 90 (563)
||+|.++.+-..+| ||.|||.+.+++.+++..- .+..+ +..|.|+
T Consensus 41 ~G~v~~v~~~~~~g---~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 41 FGSIRTIDHVKGDS---FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp TSCEEEEEECSSSC---CEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred cCCeeEEEEeCCCC---EEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 99999998876655 9999999999999998853 23333 4455554
No 46
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=92.24 E-value=0.07 Score=41.53 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=35.0
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ | ..-||.|||.+.+++.+++....+..++..+.|+
T Consensus 23 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 23 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 73 (75)
T ss_dssp HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEE
T ss_pred cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 8999888764432 2 1249999999999999999875555555555543
No 47
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=92.23 E-value=0.085 Score=45.94 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=34.9
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+...+| ||.|+|.+.+++.+++..- ....++..+.|.
T Consensus 61 ~G~I~~v~i~~~kg---~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 61 FGNIIDLSMDPPRN---CAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp TCCCSCEEEETTTT---EEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred cCCEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 99999998876667 9999999999999999753 344455455554
No 48
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=92.12 E-value=0.14 Score=44.09 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=34.0
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |. .-||.|||.+.+++.+++.-..+..++..|.|.
T Consensus 60 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 60 CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 9999887775543 32 359999999999999999323344455555554
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=91.88 E-value=0.099 Score=44.77 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=35.0
Q ss_pred eeecceEEEeecCC-ceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPG-QTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~-~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++..-.+.+ ..-||.|||.+.+++.+++.. ..+..++..|.|.
T Consensus 29 ~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 29 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp GSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 99998876655543 235999999999999999976 3344555556554
No 50
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=91.79 E-value=0.12 Score=40.16 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=34.9
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++..-.++ |+ .-||.|||.+.+++.++++-..+..++..+.|+
T Consensus 23 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 23 FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 73 (75)
T ss_dssp TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEE
T ss_pred cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEE
Confidence 8999988765543 21 259999999999999999754455555555554
No 51
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.73 E-value=0.11 Score=43.70 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=33.7
Q ss_pred eee-cceEEEe-ecCC---ceeEEEEEeCCHHHHHHHHhhc---CccCCCcceecc
Q psy10458 43 FGT-VQSMHHY-TLPG---QTHFVIVEMKDSQVTRRILNKC---GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~-i~~~~~~-~~~~---~~~~~~vef~~~~~~~~~~~~~---~~~~~~~~~~~k 90 (563)
||+ |.++... .+++ ..-||.|||.+.+++.+++..- ....++..+.|+
T Consensus 32 ~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 32 VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 898 9988776 2221 1249999999999999999853 244555555554
No 52
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=91.73 E-value=0.1 Score=43.65 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=33.8
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++..-.++ |+ .-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 43 ~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 43 IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999987765543 43 249999999999999999753 334444455553
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.54 E-value=0.27 Score=39.99 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=35.1
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..++ |+ .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 29 ~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 29 FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 8999998876653 22 249999999999999999853 344455556654
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.54 E-value=0.2 Score=41.50 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=35.4
Q ss_pred eeecceEEEeecCC-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPG-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+..+.+ ..-||.|+|.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 39 FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp TSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 99999988766542 2359999999999999999853 344455556554
No 55
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.51 E-value=0.18 Score=42.96 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=35.6
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|..+.+..++ |+ .-||.|||.+.+++.+++..-....++..|.|+
T Consensus 41 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 41 FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 9999998876653 21 239999999999999999875544555555554
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.50 E-value=0.19 Score=41.61 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+-.+. |. ..||.|||.+.+++.+++..- ....++..+.|+
T Consensus 32 ~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 32 VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 9999987776553 32 359999999999999999753 344455555554
No 57
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.34 E-value=0.22 Score=42.33 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=36.3
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|..+.+-.++ |. .-||.|+|.+.+++.+++....+..++..|.|+
T Consensus 51 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 51 WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPK 101 (116)
T ss_dssp SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEE
T ss_pred cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEE
Confidence 9999988776553 22 249999999999999999874455566666665
No 58
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=91.33 E-value=0.34 Score=39.12 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=35.3
Q ss_pred eeecceEEEeecCCc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+....|+ .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 32 ~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 32 CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 899999887765442 369999999999999998853 344445455554
No 59
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.33 E-value=0.28 Score=39.67 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=33.4
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|..+.+- +| ||.|||.+.+++.+++..-. ...++..|.|+
T Consensus 32 ~G~i~~v~~~--~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 32 YGKVLECDII--KN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCEEEEEEE--TT---EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCEEEEEEE--CC---EEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 9999998874 45 99999999999999997543 34455556665
No 60
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=91.30 E-value=0.29 Score=41.96 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=35.2
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..+. |+ .-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 31 ~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 31 HGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp SSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred cCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999998876654 21 249999999999999999753 344455556654
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.27 E-value=0.18 Score=42.04 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=36.0
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |. .-||.|||.+.+++.+++....+..++..|.|+
T Consensus 40 ~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 40 YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 9999987776653 32 249999999999999999874455556566665
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.26 E-value=0.22 Score=41.02 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=35.3
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..+. | ...||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 41 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 41 HGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999988776654 2 2359999999999999999763 344555556664
No 63
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=91.22 E-value=0.15 Score=43.16 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.1
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++..-.++ |. .-||.|+|.+.+++.+++....+..++..|.|+
T Consensus 49 ~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 49 FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 9999998775543 21 249999999999999999876555556556554
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.19 E-value=0.33 Score=40.23 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=35.6
Q ss_pred eeecceEEEeecCCc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..+.|+ ..||.|+|.+.+++.+++..- ....++..|.|+
T Consensus 39 ~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 39 FGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp TSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 999999887665432 359999999999999999853 344455556665
No 65
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.19 E-value=0.23 Score=41.22 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=35.0
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|..+.+-.++ |+ .-||.|||.+.+++.+++.. .+..++..|.|+
T Consensus 39 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 39 FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCK 88 (103)
T ss_dssp GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEE
T ss_pred cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEE
Confidence 9999888775543 32 34999999999999999985 344555556665
No 66
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.18 E-value=0.065 Score=46.64 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=32.3
Q ss_pred hhcceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh
Q psy10458 36 EAQRSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 36 qa~rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~ 77 (563)
+..|.+| ||+|.++.+...+| ||.|||.+.+++.+++..
T Consensus 42 ~~L~~~F~~fG~v~~v~i~~~rg---faFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 42 NQLLPVLEKCGLVDALLMPPNKP---YSFARYRTTEESKRAYVT 82 (114)
T ss_dssp HHHHHHHHHHSCEEEEECCTTCS---CEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEeCCCC---EEEEEECCHHHHHHHHHH
Confidence 4445566 99999998876666 999999999999999875
No 67
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=91.10 E-value=0.27 Score=39.16 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=34.6
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.+. |. .-||.|||.+.+++.+++..- .+..++..+.|+
T Consensus 30 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 30 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 8999998776653 32 359999999999999999853 344445455553
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.08 E-value=0.17 Score=41.56 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.7
Q ss_pred eeecceEEEeecCC------ceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPG------QTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~------~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|..+.+..+.. ..-||.|||.+.+++.+++.. ..+..++..|.|+
T Consensus 29 ~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 29 VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 89998877654332 135999999999999999985 3344555556665
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=91.08 E-value=0.16 Score=41.38 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=34.4
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.+. |+ .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 40 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 40 AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp GSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 9999998776553 22 359999999999999999853 344445455554
No 70
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.00 E-value=0.27 Score=40.64 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=34.7
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+..+. |. .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 36 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 36 YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 8999998876653 21 249999999999999999653 344445555554
No 71
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=90.99 E-value=0.23 Score=40.28 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=34.2
Q ss_pred ee--ecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FG--TVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G--~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
|| +|.++..-.++ |+ .-||.|||.+.+++.+++..- ....+|..|.|+
T Consensus 25 ~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 25 LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 89 89887765543 32 359999999999999999754 345555566665
No 72
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=90.85 E-value=0.2 Score=39.80 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=32.5
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (563)
||+|.++.+-.+. | ...||.|||.+.+++.+++..- .+..++..|.|
T Consensus 31 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 31 FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 9999988764432 2 1249999999999999999653 33344444444
No 73
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=90.81 E-value=0.21 Score=40.96 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=34.2
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ | ...||.|||.+.+++.+++..- ....++..+.|+
T Consensus 26 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 26 VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 8999998876553 2 1359999999999999999753 244444455554
No 74
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.75 E-value=0.14 Score=45.17 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.5
Q ss_pred cceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh
Q psy10458 38 QRSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 38 ~rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~ 77 (563)
.+.+| ||.|.+|.++...| -||.|||.+.+++.+++..
T Consensus 42 L~~~Fs~yG~V~~v~i~~~~G--f~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 42 LYTVCNPVGKVQRIVIFKRNG--IQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp HHHHHTTTSCEEEEEEEESSS--EEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEEeCCC--CEEEEEECCHHHHHHHHHH
Confidence 44455 99999988876444 4599999999999999875
No 75
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=90.72 E-value=0.25 Score=39.36 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=34.1
Q ss_pred eeecceEEEeecCC----ceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPG----QTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~----~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++.+-.+.. ...||.|||.+.+++.+++.. .....++..|.|.
T Consensus 28 ~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 28 YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 99998877654431 224999999999999999985 3344455455554
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.62 E-value=0.2 Score=42.32 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=34.9
Q ss_pred eeecceEEEeecCCc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.+.+. .-||.|||.+.+++.+++..- ....++..+.|+
T Consensus 53 ~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 53 FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp TCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 999999887655431 249999999999999999853 344455555554
No 77
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.53 E-value=0.26 Score=40.47 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=34.4
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|.++.+-.+. |+ .-||.|||.+.+++.+++..-. +..++..|.|+
T Consensus 32 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 32 YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 8999988775544 21 2499999999999999996533 44445556654
No 78
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.46 E-value=0.19 Score=42.82 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=34.1
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|.++.+-..+| ||.|||.+.+++.+++..-. ...++..|.|.
T Consensus 34 ~G~i~~v~i~~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 34 FGSLGRVLLPEGGI---TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSCEEEEECCSSSS---CEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCEEEEEEeCCCC---EEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 99999998876666 99999999999999987532 33444445543
No 79
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.18 Score=41.53 Aligned_cols=47 Identities=11% Similarity=0.260 Sum_probs=34.3
Q ss_pred ceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 39 RSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
|.+| ||+|.++.+ .+| ||.|||.+.+++.+++..- .....+..+.|.
T Consensus 29 ~~~F~~~G~v~~v~i--~~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 29 FRIFSPYGHIMQINI--KNA---FGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp HHHHTTTCCCCEEEE--ETT---EEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred HHHHHhcCCEEEEEE--eCC---EEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4445 999999887 355 9999999999999999863 333444455554
No 80
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=90.28 E-value=0.49 Score=39.29 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=35.3
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ | ...||.|||.+.+++.+++.. ..+..++..|.|+
T Consensus 47 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 47 YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 9999998876553 2 236999999999999999985 3344455556554
No 81
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=90.13 E-value=0.28 Score=41.53 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=32.8
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++.+- +| ||.|||.+.+++.+++.. .....++..+.|.
T Consensus 55 ~G~i~~v~i~--kg---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 55 FGPMKEVKIL--NG---FAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp TSCCCEEEEE--TT---EEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEE--CC---EEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 9999998875 56 999999999999999975 2333455455554
No 82
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.11 E-value=0.28 Score=41.16 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=34.7
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-------CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-------GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-------~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ | ..-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~ 96 (111)
T 1x4h_A 39 FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVD 96 (111)
T ss_dssp TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEE
T ss_pred cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEE
Confidence 9999988775442 2 2359999999999999999864 344445555554
No 83
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.08 E-value=0.36 Score=39.62 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=31.1
Q ss_pred eeecc-eEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQ-SMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~-~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|. .+.....+| ||.|||.+.+++.+++..- ....++..|.|+
T Consensus 43 ~G~v~~~~~~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 43 LGSVPLRLTWQGPRR---RAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp TTCCCSEEEEETTTT---EEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cCCEEEEEEcCCCCc---EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 89984 344333345 9999999999999999753 344445455554
No 84
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=89.95 E-value=0.27 Score=40.80 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=28.6
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhh
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~ 77 (563)
||+|.++.+..+. |+ ..||.|+|.+.+++.+++..
T Consensus 39 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 39 FGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp TSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 9999998876653 21 35999999999999999975
No 85
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.83 E-value=0.24 Score=41.10 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=34.6
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ .-||.|||.+.+++.+++..-. +..++..|.|+
T Consensus 39 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 39 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 9999998776553 22 3599999999999999998532 44445455554
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.68 E-value=0.27 Score=40.05 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=33.2
Q ss_pred eeecceE-EEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSM-HHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~-~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++ ....++ |. .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 29 ~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 29 FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 8999887 554432 22 249999999999999999853 233445455554
No 87
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.67 E-value=0.27 Score=41.21 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=34.8
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+.......-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 46 ~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 46 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp GSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 999999887554333359999999999999999653 344455556554
No 88
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.62 E-value=0.23 Score=41.03 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=34.5
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..++ | ...||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 36 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 36 FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 8999998875542 2 2359999999999999999753 344445556554
No 89
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.59 E-value=0.34 Score=40.20 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=35.0
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+-.++ |. .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 39 AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 8999988775543 21 239999999999999999863 344555556664
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=89.39 E-value=0.16 Score=42.55 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=38.2
Q ss_pred hhcceee--eeecceEEEeecCCc-eeEEEEEeCCHHHHHHHHhhc-CccCCCc-ceecc
Q psy10458 36 EAQRSIL--FGTVQSMHHYTLPGQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQ-VIPVR 90 (563)
Q Consensus 36 qa~rsv~--~G~i~~~~~~~~~~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~-~~~~k 90 (563)
+..|.+| ||+|.++.+-...|+ .-||.|||.+.+++.+++..- ....++. .|.|.
T Consensus 36 ~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~ 95 (105)
T 2nlw_A 36 NVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 95 (105)
T ss_dssp HHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEE
T ss_pred HHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEE
Confidence 4455566 999999877643332 249999999999999999863 3444443 56654
No 91
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.35 E-value=0.39 Score=39.75 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=34.7
Q ss_pred eeecceEEEeecCC-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPG-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.+.+ ..-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 39 IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp HSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 99999887766432 2359999999999999999743 344445556654
No 92
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.34 E-value=0.43 Score=38.66 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=34.1
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.+. |. .-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 39 ~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 39 YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999988775543 22 359999999999999999853 244444455553
No 93
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=89.18 E-value=0.43 Score=40.30 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=35.2
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..++ |. .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 39 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999998776653 32 359999999999999999753 344455555554
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=89.11 E-value=0.31 Score=40.09 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=32.8
Q ss_pred eeecce--------EEEeecC--Cc-eeEEEEEeCCHHHHHHHHhh-cCccCCCcceec
Q psy10458 43 FGTVQS--------MHHYTLP--GQ-THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~--------~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (563)
||.|.. +.+..++ |+ .-||.|||.+.+++.+++.. .....++..|.|
T Consensus 37 ~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 95 (99)
T 2la6_A 37 IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 95 (99)
T ss_dssp TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 899988 6665553 32 34999999999999999974 233344444544
No 95
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=89.07 E-value=0.21 Score=41.34 Aligned_cols=42 Identities=10% Similarity=0.294 Sum_probs=31.5
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (563)
||+|.++.+ .+| ||.|||.+.+++.+++..-. ...++..+.|
T Consensus 47 ~G~v~~v~i--~~g---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 47 YGHIMQINI--KNA---FGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp GSCEEEEEE--CSS---EEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred cCCEEEEEE--eCC---EEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 999999887 355 99999999999999998532 3333444444
No 96
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.05 E-value=0.17 Score=42.64 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=27.9
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|..+....+ | ||.|||.+.+++.+++..-
T Consensus 39 ~G~i~~~~i~~~-g---~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 39 AGDVCYADVYRD-G---TGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp GSCEEEEEEETT-T---EEEEEESSHHHHHHHHHHS
T ss_pred cCCEeEEEEecC-C---EEEEEECCHHHHHHHHHHH
Confidence 899999887665 5 9999999999999999853
No 97
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=88.95 E-value=0.24 Score=44.03 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=28.7
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|.+|.++.... +-+|.|||.+.+++.+++..-
T Consensus 52 yG~V~~V~i~~~~~-gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 52 FGTVLKIITFTKNN-QFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp SSCEEEEEEEEETT-EEEEEEEESCHHHHHHHHHHH
T ss_pred cCCEEEEEEEcCCC-CcEEEEEECCHHHHHHHHHHc
Confidence 99999988876542 345999999999999998753
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.75 E-value=0.29 Score=41.38 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=34.8
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ .-||.|||.+.+++.+++.-..+..++..|.|+
T Consensus 49 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 49 VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 99 (114)
T ss_dssp TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEE
Confidence 9999998875443 21 249999999999999999334455556566664
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.71 E-value=0.42 Score=37.95 Aligned_cols=39 Identities=8% Similarity=0.227 Sum_probs=29.9
Q ss_pred ceee--eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhh
Q psy10458 39 RSIL--FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~ 77 (563)
|.+| ||+|.++.+-.++ |. .-||.|||.+.+++.+++..
T Consensus 23 ~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 23 VKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp HTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4455 9999998765543 22 24999999999999999875
No 100
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=88.69 E-value=0.16 Score=42.78 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=32.8
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+ .+| ||.|||.+.+++.+++..- ....++..|.|+
T Consensus 52 ~G~v~~v~i--~~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 52 YGRVAGCSV--HKG---YAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp GSCCSEEEE--ETT---EEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCeEEEEE--eCC---EEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 999999887 455 9999999999999999653 344445455554
No 101
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=88.66 E-value=0.61 Score=39.30 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=34.3
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++..-..+ |. .-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 50 ~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 50 FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 9999887775543 32 249999999999999999743 344445555554
No 102
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=88.65 E-value=0.17 Score=41.91 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=34.9
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+-.+. | ..-||.|||.+.+++.+++. ..+..++..+.|.
T Consensus 33 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 33 YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp GSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 9999887765543 2 23699999999999999998 5555556555543
No 103
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.64 E-value=0.36 Score=40.80 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=38.3
Q ss_pred ceee--eeecceEEEeecCCc------eeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 39 RSIL--FGTVQSMHHYTLPGQ------THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~~~------~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
+.+| ||+|.++.+..+.+. .-||.|||.+.+++.+++.. ..+..++..|.|.
T Consensus 36 ~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 96 (111)
T 2cpi_A 36 PEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 96 (111)
T ss_dssp TTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred HHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3666 999999888665531 14999999999999999986 3444555556654
No 104
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.61 E-value=0.41 Score=38.80 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=32.9
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+- ++ ||.|||.+.+++.+++..- .+..++..+.|+
T Consensus 34 ~G~v~~v~~~--~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 34 YGPVIECDIV--KD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp TSCCCEEEEC--SS---EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCeEEEEEE--CC---EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 9999998874 33 9999999999999999753 344455556665
No 105
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=88.47 E-value=0.25 Score=42.23 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=30.8
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQV 86 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~ 86 (563)
||+|..+.+..+ | ||.|||.+.+++.+++..-. ...++..
T Consensus 40 ~G~v~~~~i~~~-g---~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 40 AGDVCYADVYRD-G---TGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp GSCEEEEEECTT-S---EEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred cCCeEEEEEecC-C---EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 899999887554 5 99999999999999998533 3344433
No 106
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.47 E-value=0.38 Score=38.93 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=32.8
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcC-ccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCG-HLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (563)
||+|.++.+..++ |+ .-||.|||.+.+++.+++..-. +..++..|.|
T Consensus 40 ~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 40 YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 9999998876543 21 2499999999999999997432 3333444444
No 107
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=88.41 E-value=0.32 Score=38.37 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=34.0
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++..-.+. |+ ..||.|+|.+.+++.+++.. ..+..++..+.|+
T Consensus 25 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 25 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 8999887665442 32 36999999999999999985 3344445455554
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=88.40 E-value=0.44 Score=39.40 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=32.1
Q ss_pred eeecceEEEeecC---Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP---GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~---~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
|| |.++.+-.+. |+ .-||.|||.+.+++.+++.-.....++..|.|+
T Consensus 43 ~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 43 LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 89 9888775543 21 249999999999999999433344444444443
No 109
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=88.37 E-value=0.51 Score=39.87 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=34.6
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.+.....||.|||.+.+++.+++..- ....++..+.|.
T Consensus 32 ~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 32 YGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred cCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 999999887554433359999999999999998853 344444455553
No 110
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=88.22 E-value=0.52 Score=39.20 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=33.3
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhh-cCccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (563)
||+|.++.+-.+. |+ ..||.|||.+.+++.+++.. .....++..|.|
T Consensus 53 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 53 FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 9999887665443 32 35999999999999999985 334444444544
No 111
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=88.15 E-value=0.53 Score=39.81 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=34.8
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 49 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 49 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 9999987766554 32 359999999999999999763 344445555554
No 112
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=88.13 E-value=0.54 Score=42.14 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=35.3
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.+. | ..-||.|||.+.+++.+++..- .+..++..|.|.
T Consensus 63 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 9999998876654 2 2359999999999999999853 344455555554
No 113
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=88.04 E-value=0.52 Score=42.81 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=35.7
Q ss_pred ee--ecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FG--TVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G--~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
|| +|.++....++ |+ .-||.|||.+.+++.+++.. ..+..++..|.|+
T Consensus 79 ~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 79 IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 99 89887765553 42 24999999999999999987 3455555566665
No 114
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.00 E-value=0.37 Score=40.27 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=32.7
Q ss_pred eeecce-EEEeec-CCc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQS-MHHYTL-PGQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~-~~~~~~-~~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||.|.+ +.+-.+ .|+ .-||.|||.+.+++.+++....+..++..|.|.
T Consensus 39 ~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 39 LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 899976 543222 222 249999999999999999874455555455553
No 115
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.98 E-value=0.38 Score=40.54 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=34.5
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..++ |+ ..||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 39 AGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp TSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 8999887765543 22 359999999999999998853 344455556664
No 116
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.96 E-value=0.4 Score=40.79 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=33.8
Q ss_pred eeec-ceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTV-QSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i-~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||.| .++.+-.++ | ..-||.|||.+.+++.+++....+..++..|.|.
T Consensus 39 ~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 39 IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 8999 666553322 2 1249999999999999999874455555556654
No 117
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=87.87 E-value=0.38 Score=42.18 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=34.6
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ .-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 70 ~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 70 YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999998775543 21 249999999999999999853 344455556654
No 118
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=87.84 E-value=0.63 Score=42.59 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=35.4
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+-.+. |. .-||.|||.+.+++.+++....+..++..+.++
T Consensus 37 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 37 WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 9999887776543 32 349999999999999999875555555555554
No 119
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=87.72 E-value=0.55 Score=37.67 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=34.4
Q ss_pred ceee--eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 39 RSIL--FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
+.+| ||+|.++..-.+. | ..-||.|||.+.+ +.+++..- .+..++..+.|+
T Consensus 19 ~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 19 KELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp TTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred HHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 4444 9999998775543 2 2359999999999 88888753 344444455554
No 120
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=87.65 E-value=0.19 Score=41.04 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=23.6
Q ss_pred eeecceEEEee-cCCceeEEEEEeCCHHHHHHH
Q psy10458 43 FGTVQSMHHYT-LPGQTHFVIVEMKDSQVTRRI 74 (563)
Q Consensus 43 ~G~i~~~~~~~-~~~~~~~~~vef~~~~~~~~~ 74 (563)
||+|.++..-. .+| ||.|||++.+++.++
T Consensus 35 ~G~i~~v~i~~~srG---faFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 35 YGEVVDVFIPKPFRA---FAFVTFADDKVAQSL 64 (89)
T ss_dssp TSCEEEEECCSSCCS---EEEEEESCHHHHHHH
T ss_pred cCCEEEEEEeeCCCC---EEEEEECCHHHHHHH
Confidence 99998876643 245 999999999999864
No 121
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=87.60 E-value=0.6 Score=41.53 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=34.3
Q ss_pred eeecceEEEeec-CCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTL-PGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~-~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++..-.+ +| ||.|||.+.+++.+++..- ....++..|.|+
T Consensus 97 ~G~i~~v~i~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 97 YGPLRSVWVARNPPG---FAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp HSCEEEEEECSSSCS---EEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred hCCEEEEEEeeCCCc---EEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 999999887665 45 9999999999999999753 344455555554
No 122
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.51 E-value=0.49 Score=39.84 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=33.8
Q ss_pred eeecc--------eEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQ--------SMHHYTLP--GQ-THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~--------~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|. .+....++ |+ .-||.|||.+.+++.+++.. ..+..++..|.|+
T Consensus 39 ~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (113)
T 2cpe_A 39 CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVS 98 (113)
T ss_dssp TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEE
Confidence 89998 56665553 22 24999999999999999985 3344445556554
No 123
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=87.51 E-value=0.3 Score=40.55 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=37.6
Q ss_pred hhhcceee--eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCC-cceecc
Q psy10458 35 LEAQRSIL--FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKS-QVIPVR 90 (563)
Q Consensus 35 ~qa~rsv~--~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~-~~~~~k 90 (563)
++..|.+| ||+|.++.+-.+. |+ .-||.|+|.+.+++.+++..- ....++ ..+.|+
T Consensus 26 ~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~ 88 (100)
T 3ns6_A 26 KKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLY 88 (100)
T ss_dssp HHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred HHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEE
Confidence 34455666 9999987764433 21 249999999999999999753 233343 455554
No 124
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=87.50 E-value=0.64 Score=39.49 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=34.5
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|.++....+. | ..-||.|+|.+.+++.+++..-. ...++..|.|.
T Consensus 30 ~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 30 YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 9999987665443 3 23599999999999999997532 44445556554
No 125
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.49 E-value=0.38 Score=39.82 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=35.1
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ | ...||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 37 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 37 YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 8999998775543 2 1249999999999999999853 345555566665
No 126
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=87.47 E-value=0.72 Score=40.30 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=34.9
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ ..||.|||.+.+++.+++..- ....++..|.|+
T Consensus 66 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 66 YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 9999988776554 22 359999999999999999853 344445556654
No 127
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=87.37 E-value=0.49 Score=40.65 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=34.9
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ ..||.|||.+.+++.+++.. .....++..|.|.
T Consensus 46 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 46 YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 9999998775542 22 24999999999999999975 3344555566664
No 128
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=87.24 E-value=0.46 Score=40.34 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=33.1
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (563)
||+|.++.+-.++ | ..-||.|||.+.+++.+++..- ....++..|.|
T Consensus 64 ~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 64 FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 9999998875543 2 1359999999999999999853 23334444444
No 129
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=87.17 E-value=0.45 Score=39.83 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=34.1
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ ..||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 50 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 50 YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 9999998775443 21 259999999999999999853 344445455554
No 130
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=87.00 E-value=0.23 Score=51.46 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=31.6
Q ss_pred ceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh
Q psy10458 39 RSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~ 77 (563)
|.+| ||+|.+|.+...+| ||.|||++.+++.++++.
T Consensus 38 ~~~F~~~G~V~~v~~~~~kg---faFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 38 LPVLEKCGLVDALLMPPNKP---YSFARYRTTEESKRAYVT 75 (345)
T ss_dssp HHHHHTTSCEEEEECCTTCS---EEEEEESSHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEeCCCC---EEEEEECCHHHHHHHHHH
Confidence 4456 99999999988777 999999999999999975
No 131
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=86.95 E-value=0.51 Score=41.09 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=32.8
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (563)
||+|.++.+-.++ | ..-||.|||.+.+++.+++..-. +..++..|.|
T Consensus 87 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 87 FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 9999998775442 2 23599999999999999997532 3334444544
No 132
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=86.92 E-value=0.16 Score=41.64 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=32.4
Q ss_pred ee-ecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcC--ccCCCcceecc
Q psy10458 43 FG-TVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCG--HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G-~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~--~~~~~~~~~~k 90 (563)
|| +|.++..-.++ | ..-||.|||.+.+++.+++..-. ...+|..|.|.
T Consensus 25 ~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~ 78 (91)
T 2lxi_A 25 HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMH 78 (91)
T ss_dssp HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEE
T ss_pred hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEE
Confidence 88 78886553332 2 23599999999999999997532 23445555554
No 133
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.91 E-value=0.57 Score=38.69 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=34.2
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhcC-cc-CCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKCG-HL-DKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~~-~~-~~~~~~~~k 90 (563)
||+|.++..-.+. | ..-||.|||.+.+++.+++..-. .. .++..|.|+
T Consensus 34 ~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 34 YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 8999887665542 2 23599999999999999998543 33 455555554
No 134
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=86.83 E-value=0.48 Score=39.31 Aligned_cols=43 Identities=9% Similarity=0.309 Sum_probs=33.0
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|..+..- +| ||.|||.+.+++.+++.. ..+..++..|.|+
T Consensus 35 ~G~i~~v~~~--~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 35 FGKLERVKKL--KD---YAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp HSCEEEEEEC--SS---CEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCEEEEEEE--CC---EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 9999998763 34 999999999999999985 3344455566665
No 135
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=86.75 E-value=0.36 Score=44.63 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=35.9
Q ss_pred ceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccC--CCcceecc
Q psy10458 39 RSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLD--KSQVIPVR 90 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~--~~~~~~~k 90 (563)
|.+| ||+|.+|..+..+ ..-||.|||.+.+++.+++..-. ... ++..|+|.
T Consensus 64 ~~~Fs~fG~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 64 HQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp HHHHHHHSCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred HHHHHhcCCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 4455 9999999887543 22599999999999999987533 222 23455554
No 136
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.60 E-value=0.24 Score=39.80 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=29.7
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~ 89 (563)
||+|.++.+-.... -||.|||.+.++++++... .+..++..|.|
T Consensus 29 ~G~i~~v~i~~~~~--g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v 72 (88)
T 1wf0_A 29 YGDVMDVFIPKPFR--AFAFVTFADDQIAQSLCGE-DLIIKGISVHI 72 (88)
T ss_dssp TSCCCEEECCSSCC--SCCEEECSCHHHHHHTTTC-EEEETTEEEEE
T ss_pred cCCeeEEEEecCCC--CEEEEEECCHHHHHHHhcC-CceeCCEEEEE
Confidence 99999988754422 4999999999999876433 33333434444
No 137
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=86.49 E-value=0.81 Score=39.24 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++....+. | ..-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 59 ~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 59 FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 9999998776543 2 1249999999999999998843 344445555554
No 138
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=86.43 E-value=0.53 Score=37.88 Aligned_cols=44 Identities=5% Similarity=-0.005 Sum_probs=32.5
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
| +|.++..+..+| ||.|||.+.+++.+++..-. ...++..+.|.
T Consensus 29 ~-~v~~~~i~~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 29 Y-DLKYCYVDRNKR---TAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp S-CCCCEEEEGGGT---EEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred C-CeEEEEEeCCCc---EEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 6 788888776667 99999999999999988432 33444455553
No 139
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.43 E-value=0.4 Score=38.66 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=32.5
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+- +| ||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 33 ~G~v~~~~~~--~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 33 RGRVIECDVV--KD---YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp HSCEEEEEEC--SS---CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEEE--CC---EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 9999998874 33 9999999999999998853 344445555554
No 140
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=86.30 E-value=0.7 Score=41.07 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=34.8
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.++.+..++ | ..-||.|+|.+.+++.+++.......++..|.|+
T Consensus 111 ~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 111 WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIK 161 (167)
T ss_dssp TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEE
T ss_pred CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEe
Confidence 9999998876553 2 2259999999999999999743344455555554
No 141
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=86.27 E-value=0.73 Score=42.15 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=36.1
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|..+....+. | ..-||.|||.+.+++.+++....+..++..|.|+
T Consensus 128 ~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178 (196)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEE
T ss_pred CCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEE
Confidence 9999988776653 2 2359999999999999999865555555556654
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.27 E-value=0.93 Score=36.78 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=32.4
Q ss_pred eeecceE-EEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSM-HHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~-~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++ .+..++..+. |.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~G~v~~~~~i~~~~~~~~-afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 39 YGVVESCEQVNTDSETAV-VNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp HSCEEEEEEECCSSSSEE-EEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred cCCeEEEEEeecCCCCCE-EEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 9999998 4444443334 999999999999998743 344445455554
No 143
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.20 E-value=0.32 Score=41.95 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=33.2
Q ss_pred eeecce--EEEeecCCc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQS--MHHYTLPGQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~--~~~~~~~~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.. ++.+...|+ .-||.|||.+.+++.+++.-..+..++..|.|.
T Consensus 49 ~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 49 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 999976 333433443 359999999999999999844455555555554
No 144
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=86.06 E-value=0.38 Score=39.19 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=32.7
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++.+-+......||.|||.+.+++.+++.. .....++..+.|.
T Consensus 36 ~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 36 FGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp GSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 99999987753211113999999999999999975 2333444455553
No 145
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=85.80 E-value=0.7 Score=40.84 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=34.1
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++....++ | ...||.|||.+.+++.+++..- ....++..+.++
T Consensus 26 ~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 77 (167)
T 1fxl_A 26 IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 77 (167)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE
Confidence 8999998876655 2 2259999999999999999752 333344444443
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=85.54 E-value=0.97 Score=36.66 Aligned_cols=46 Identities=7% Similarity=-0.013 Sum_probs=31.9
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|..+ .......-||.|||.+.+++.+++..-. ...++..|.|+
T Consensus 40 ~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 40 ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp EEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 8999887 2222223599999999999999998533 44445555554
No 147
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=85.43 E-value=0.88 Score=37.65 Aligned_cols=36 Identities=8% Similarity=0.163 Sum_probs=28.6
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|.++.+-.++ | ..-||.|+|.+.+++.+++..-
T Consensus 37 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (106)
T 2dgp_A 37 FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 75 (106)
T ss_dssp HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH
T ss_pred cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 9999998875543 2 1249999999999999998753
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.42 E-value=1.6 Score=38.02 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=40.5
Q ss_pred chHHHHHHHHhhhcceee-------------------eeec----ceEEEeec-CCc-eeEEEEEeCCHHHHHHHHhhcC
Q psy10458 25 YFVPSIEYRRLEAQRSIL-------------------FGTV----QSMHHYTL-PGQ-THFVIVEMKDSQVTRRILNKCG 79 (563)
Q Consensus 25 ~~~~~~~~r~~qa~rsv~-------------------~G~i----~~~~~~~~-~~~-~~~~~vef~~~~~~~~~~~~~~ 79 (563)
.-.+..........+.|| ||+| ..|++-.+ .|+ .-||.|||.+.+++.+++....
T Consensus 10 ~~~~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~ 89 (123)
T 2dha_A 10 TSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHK 89 (123)
T ss_dssp CCHHHHHHHHCCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTT
T ss_pred CchhHHhhccCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCC
Confidence 334444444455566777 7875 46554332 232 3599999999999999998644
Q ss_pred ccCCCcceec
Q psy10458 80 HLDKSQVIPV 89 (563)
Q Consensus 80 ~~~~~~~~~~ 89 (563)
+..++..|.|
T Consensus 90 ~~l~gR~i~V 99 (123)
T 2dha_A 90 DLLGKRYIEL 99 (123)
T ss_dssp EESSSCEECC
T ss_pred CeeCCeEEEE
Confidence 4444434444
No 149
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.29 E-value=0.82 Score=37.33 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.8
Q ss_pred eeecc-eEEEeecC--C-ceeEEEEEeCCHHHHHHHHhh
Q psy10458 43 FGTVQ-SMHHYTLP--G-QTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 43 ~G~i~-~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~ 77 (563)
||+|. ++..-.++ | ..-||.|||.+.+++.+++..
T Consensus 33 ~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 33 MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 99998 87665544 3 235999999999999999974
No 150
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.24 E-value=0.5 Score=38.73 Aligned_cols=51 Identities=20% Similarity=0.103 Sum_probs=36.1
Q ss_pred eee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 40 SIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 40 sv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
.+| ||+|.++..-.++...-||.|||.+.+++.+++..-. ...++..|.|+
T Consensus 32 ~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 32 EAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp HHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred HhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 455 9999998876553212499999999999999988533 33445455554
No 151
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.67 E-value=0.74 Score=38.10 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=32.5
Q ss_pred eeecceEEEeecC---Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP---GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~---~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
|| |.++.+-.+. |+ .-||.|||.+.+++.+++.-..+..++..|.|+
T Consensus 39 ~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 39 LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 89 8887765443 21 249999999999999999333344455555554
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=84.42 E-value=1.2 Score=39.31 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=33.3
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..++ | ..-||.|+|.+.+++.+++..- .....+..+.++
T Consensus 24 ~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 74 (166)
T 3md3_A 24 GGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKIN 74 (166)
T ss_dssp GSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEE
Confidence 8999988775544 2 2369999999999999999543 333344444443
No 153
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.33 E-value=0.88 Score=37.99 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=30.8
Q ss_pred eeecceEEEeec-CCc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTL-PGQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~-~~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||.| ++.+-.+ .|+ .-||.|||.+.+++.+++....+..++..|.|.
T Consensus 39 ~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 39 LNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred cCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 8865 5544333 232 249999999999999999654444445445553
No 154
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=84.10 E-value=0.85 Score=39.98 Aligned_cols=52 Identities=2% Similarity=-0.013 Sum_probs=35.6
Q ss_pred ceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 39 RSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 39 rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
+.+| ||+|.++.........-||.|||.+.+++.+++..-. ....+..|.|.
T Consensus 51 ~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 51 YALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp HHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred HHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4456 9999998875432222499999999999999997532 33444455553
No 155
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=84.10 E-value=1 Score=44.31 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=33.5
Q ss_pred eeecceEEEeecC-CceeEEEEEeCCHHHHHHHHhhcCccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP-GQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~ 89 (563)
||+|.++.+..+. |...||.|||.+.+++.+++.-.....++..+.+
T Consensus 65 ~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 65 CGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp GSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred cCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 9999998887643 3346999999999999999953333333333433
No 156
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=83.92 E-value=0.35 Score=41.47 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=32.1
Q ss_pred ee-ecceEEEee--cCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FG-TVQSMHHYT--LPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G-~i~~~~~~~--~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
|| +|..+.... .+| ||.|||.+.+++++++..- ....++..|.|+
T Consensus 52 ~G~~v~~v~i~~~~~rG---faFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 52 NSLETTFSSVNTRDFDG---TGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp HTCCCSEEECSSCSSSC---CEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred hCCeeEEEEEEcCCCCC---EEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 79 888877642 345 9999999999999999753 233444455554
No 157
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=83.77 E-value=0.88 Score=40.03 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=34.1
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++ |+ .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 71 ~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 71 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 9999998775443 21 249999999999999999752 344445555554
No 158
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.67 E-value=0.63 Score=37.64 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=31.6
Q ss_pred eee-cceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC--ccCCCcceecc
Q psy10458 43 FGT-VQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG--HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~-i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~--~~~~~~~~~~k 90 (563)
||+ |..+.. ..+| ||.|||.+.+++.+++..-. ...++..+.|+
T Consensus 32 ~G~vv~~~~~-~~~g---~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 32 RKLPLAGQVL-LKSG---YAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp TTCCCSSCEE-EETT---EEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred cCCceEEEEE-cCCC---EEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 899 555554 4566 99999999999999987532 44455555554
No 159
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.57 E-value=0.51 Score=38.54 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=32.6
Q ss_pred eeecce--EEEeecCCc-eeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQS--MHHYTLPGQ-THFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~--~~~~~~~~~-~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|.. +..+...|+ .-||.|||.+.+++.+++..-. ...++..|.|+
T Consensus 39 ~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 39 YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 899965 444443332 3699999999999999997543 44444455554
No 160
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=83.52 E-value=0.81 Score=41.50 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.1
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+...+ |. ..||.|||.+.+++.+++..- ....++..|.|.
T Consensus 96 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 96 YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999998886653 21 359999999999999999753 344455555554
No 161
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=83.20 E-value=0.5 Score=42.27 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=34.9
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|..+..-.+. | ..-||.|+|.+.+++.+++.. ..+..++..|.|+
T Consensus 94 ~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 94 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 9999988775543 2 124999999999999999976 3344555566665
No 162
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.04 E-value=0.69 Score=39.13 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=36.7
Q ss_pred hhhcceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 35 LEAQRSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 35 ~qa~rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
++..|..| ||+|.++.+.. +...-||.|+|.+.+++.+++..-. ...++..|.|.
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~-~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~ 97 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFD-RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 97 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEET-TCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred HHHHHHHHHccCCEeEEEEec-CCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456667 99999987642 2122499999999999999987533 33344444443
No 163
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=82.81 E-value=1.1 Score=36.20 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=31.9
Q ss_pred eeecceE--EEeecCCc-eeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSM--HHYTLPGQ-THFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~--~~~~~~~~-~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|..+ ..+...|+ .-||.|||.+.+++.+++.. ..+..++..|.|.
T Consensus 39 ~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 39 YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 8999754 33333332 36999999999999999975 3344444445443
No 164
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.63 E-value=1 Score=36.91 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=30.1
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+| .+..+......-||.|||.+.+++.+++..-. +..++..|.|+
T Consensus 39 ~g~v-~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 39 ATFI-KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSEE-ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCEE-EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 8888 33333221123599999999999999998533 44445555554
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=82.61 E-value=1.8 Score=40.13 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=35.7
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+.+..+. |+ ..||.|||.+.+++.+++..- ....++..|.|.
T Consensus 149 ~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 149 FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 9999998877653 32 359999999999999999853 344555556654
No 166
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=82.16 E-value=0.88 Score=37.35 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=30.7
Q ss_pred eeecce-EEEeecCC-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQS-MHHYTLPG-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~-~~~~~~~~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||+|.. +..+...| ..-||.|||.+.+++.+++.-..+..++..|.|+
T Consensus 41 ~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 41 LFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 90 (101)
T ss_dssp HHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEE
T ss_pred hCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEE
Confidence 888876 33332222 1239999999999999999733344445455554
No 167
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.14 E-value=1.7 Score=35.80 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=31.8
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
|| |.++.+-.++ |+ .-||.|||.+.+++.+++.-.....++..|.|+
T Consensus 39 ~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 39 LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 77 8887765554 32 249999999999999999323344444455554
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=81.93 E-value=0.87 Score=40.45 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=33.0
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~ 89 (563)
||+|.++.+..+. | ..-||.|||.+.+++.+++... +..++..+.+
T Consensus 27 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v 75 (167)
T 2cjk_A 27 YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDP 75 (167)
T ss_dssp TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCC
T ss_pred CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc-cccCCeEccc
Confidence 9999998876543 2 1249999999999999999853 3444444443
No 169
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=81.81 E-value=0.93 Score=37.56 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=27.2
Q ss_pred eee--cceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhcC
Q psy10458 43 FGT--VQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKCG 79 (563)
Q Consensus 43 ~G~--i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~~ 79 (563)
||. |.+|..-+++ |+ .-||.|||.+.+++.+++..-.
T Consensus 33 ~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 33 YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH
T ss_pred hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc
Confidence 895 6677654443 32 2499999999999999997643
No 170
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=81.73 E-value=0.73 Score=45.16 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=33.9
Q ss_pred hhhcceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc
Q psy10458 35 LEAQRSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 35 ~qa~rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~ 78 (563)
++..|.+| ||+|.+|..-..+| ||.|+|.+.+++..++..-
T Consensus 157 Ee~L~~~F~~fG~I~~v~v~~~kG---~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 157 ESRIRFVFSRLGDIDRIRYVESKN---CGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp HHHHHHHHHTTSCEEEEEEEGGGT---EEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEEEEEEECCCC---EEEEEeCCHHHHHHHHHHh
Confidence 44555666 99999998877777 9999999999999998653
No 171
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.38 E-value=0.68 Score=39.00 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhh
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~ 77 (563)
||+|.++....+. | ..-||.|+|.+.+++.+++..
T Consensus 49 ~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 49 FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp TSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred cCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 9999887765543 2 235999999999999999985
No 172
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=81.07 E-value=1.9 Score=36.80 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=33.3
Q ss_pred eee---cceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGT---VQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~---i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||. |..+.+-.++ |+ .-||.|||.+.+++.+++.-..+..++..|.|.
T Consensus 41 ~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 41 CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 788 7776654433 32 359999999999999999844444555555553
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=80.63 E-value=1.5 Score=39.08 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=31.0
Q ss_pred ecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 45 TVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 45 ~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
+|.++.....+| ||.|||.+.+++.+++.-..+..++..+.++
T Consensus 41 ~v~~~~~~~~~g---~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 83 (172)
T 2g4b_A 41 PVLAVQINQDKN---FAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (172)
T ss_dssp SEEEEEEETTTT---EEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred ceeeeEecCCCC---EEEEEeCCHHHHHHHHHhCCcEecCceeeec
Confidence 666776666666 9999999999999999433444455555554
No 174
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=80.47 E-value=1.5 Score=42.68 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=34.7
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+-.++| ||.|+|.+.+++.+++..- .....+..+.|+
T Consensus 46 ~G~i~~v~i~~~kg---~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 46 YGEPSEVFINRDRG---FGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp GCCCSEEEEETTTT---EEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEeCCCc---EEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 99999999877777 9999999999999998743 333444444443
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=80.41 E-value=1.4 Score=38.95 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=33.7
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++....++ | ..-||.|||.+.+++.+++..- ....++..+.++
T Consensus 27 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 27 IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 8999998876654 2 1249999999999999999743 333344444443
No 176
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=80.32 E-value=0.99 Score=42.54 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=35.1
Q ss_pred eeecceEEEeecCC-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPG-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+..-.+.+ ..-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 127 ~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 127 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp GSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 99998876544443 3469999999999999999763 344556566664
No 177
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=80.25 E-value=1 Score=37.90 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=28.6
Q ss_pred eeecceEEEeecCC--ceeEEEEEeCCHHHHHHHHhh
Q psy10458 43 FGTVQSMHHYTLPG--QTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 43 ~G~i~~~~~~~~~~--~~~~~~vef~~~~~~~~~~~~ 77 (563)
||+|.++....+.+ ..-||.|+|.+.+++.+++..
T Consensus 51 ~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ 87 (104)
T 1jmt_A 51 YGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87 (104)
T ss_dssp TCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHH
T ss_pred CCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHH
Confidence 89999988866541 135999999999999999875
No 178
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.91 E-value=1.8 Score=35.26 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=31.7
Q ss_pred e--eecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 F--GTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~--G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
| |.|..+.. .+| ||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 39 ~g~g~v~~~~~--~~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 39 IKPGAVERVKK--IRD---YAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp TSTTCEEEEEE--CSS---EEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcceEEEEE--eCC---eEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 7 88888764 345 9999999999999999843 344445556664
No 179
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=79.72 E-value=1.8 Score=41.70 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=34.7
Q ss_pred ee--ecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FG--TVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G--~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
|| +|.+|.+-.++ |+ .-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 92 ~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 92 LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 99 89887765553 32 359999999999999999853 244555555554
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=79.48 E-value=1.4 Score=39.33 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=28.3
Q ss_pred eeecceEEEeecCC-----ceeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLPG-----QTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~~-----~~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|.++.+-.+.. ..-||.|||.+.+++.+++..-
T Consensus 27 ~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 27 YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 67 (175)
T ss_dssp TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 89998877655431 2359999999999999998753
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=79.24 E-value=0.8 Score=40.89 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=29.0
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|.++.+..+. |+ .-||.|+|.+.+++.+++..-
T Consensus 119 ~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 119 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp GSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 9999998776653 32 359999999999999998754
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=79.07 E-value=1.2 Score=43.63 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=33.3
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCC-Ccceec
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDK-SQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~-~~~~~~ 89 (563)
||.|.++.+...+. -||.|||.+.+++.+++..-. ...+ +..|.|
T Consensus 231 ~G~i~~v~~~~~~~--g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 231 FPGFKEVRLVPGRH--DIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred cCCeEEEEEecCCC--cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 99999988876552 399999999999999988543 2222 444444
No 183
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=78.88 E-value=1.6 Score=36.36 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=32.7
Q ss_pred eee---cceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGT---VQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~---i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||. |.++.+-.+. | ..-||.|||.+.+++.+++....+..++..|.|.
T Consensus 35 ~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 35 CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 787 7777664433 2 1249999999999999999844444444445443
No 184
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=78.75 E-value=1.5 Score=39.98 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=30.7
Q ss_pred ecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 45 TVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 45 ~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
.|.++.....+| ||.|||.+.+++.+++.-..+..++..|.|.
T Consensus 41 ~v~~~~~~~~~g---~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~ 83 (198)
T 2yh0_A 41 PVLAVQINQDKN---FAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (198)
T ss_dssp SEEEEEEETTTT---EEEEEESCSHHHHHHGGGTTEEETTEEEEEE
T ss_pred ceEEeEecCCCC---EEEEEeCCHHHHHHHHHhcCCEEcCceEEEe
Confidence 566666655566 9999999999999999433444455556654
No 185
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=78.71 E-value=1.3 Score=44.42 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeecccc
Q psy10458 160 RFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDL 205 (563)
Q Consensus 160 R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~ 205 (563)
...+++.|.+.+++--.=..|..+||.++|-...-||+|+++...+
T Consensus 24 ~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 24 QKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 3456666767666522225699999999999888999999998865
No 186
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=79.77 E-value=0.43 Score=40.54 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=35.9
Q ss_pred hhcceee--eeecce--------EEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 36 EAQRSIL--FGTVQS--------MHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 36 qa~rsv~--~G~i~~--------~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
+..+.+| ||+|.. +....++ |+ .-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 22 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (116)
T 2lcw_A 22 ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVS 90 (116)
Confidence 3445666 999987 4444332 21 249999999999999998752 344444455554
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=78.28 E-value=0.73 Score=43.61 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred hcceee--eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 37 AQRSIL--FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 37 a~rsv~--~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
..|.+| ||.|.++..-.++. -||.|||.+.+++.+++..- .....+..|.|.
T Consensus 21 ~L~~~F~~~G~v~~v~i~~~~~--g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 21 RVFNVFCLYGNVEKVKFMKSKP--GAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp HHHHHHTTTSCEEEEEECTTST--TCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred HHHHHHHhcCCeEEEEEecCCC--CEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 345566 99999987655432 39999999999999998753 344445556665
No 188
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.27 E-value=2.1 Score=34.31 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=31.3
Q ss_pred eeecceEEEeec-CCc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTL-PGQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~-~~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
| .|.++.+-.+ .|+ .-||.|||.+.+++.+++.-.....++..|.|+
T Consensus 34 ~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 34 L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 5 6777655443 232 359999999999999999833344455555554
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=78.03 E-value=1.7 Score=36.57 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=33.3
Q ss_pred eeecceEEEeecC---C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP---G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~---~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (563)
||+|.++....+. | ..-||.|+|.+.+++.+++..= ....++..|.+
T Consensus 37 ~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 37 YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 9999998887653 1 1359999999999999998753 23334434444
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=77.97 E-value=3.8 Score=37.78 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=32.5
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (563)
||+|.++.+-.+. | ...||.|+|.+.+++.+++..- ....++..|.|
T Consensus 52 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 52 FGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp GSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 9999998775432 2 2359999999999999999853 34444444555
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=77.84 E-value=1 Score=42.65 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=30.2
Q ss_pred eeec--ceEEEeecCCc-eeEEEEEeCCHHHHHHHHhhcC
Q psy10458 43 FGTV--QSMHHYTLPGQ-THFVIVEMKDSQVTRRILNKCG 79 (563)
Q Consensus 43 ~G~i--~~~~~~~~~~~-~~~~~vef~~~~~~~~~~~~~~ 79 (563)
||.| .++..+..+|. ..||.|||++.+++.+++..-.
T Consensus 147 ~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ln 186 (205)
T 3tyt_A 147 LGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLN 186 (205)
T ss_dssp HTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHT
T ss_pred cCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 9999 88887776542 3699999999999999987643
No 192
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=77.76 E-value=1.2 Score=39.79 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=34.2
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (563)
||+|.++....+. |. .-||.|+|.+.+++.+++..- ....++..|.|
T Consensus 118 ~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 168 (172)
T 2g4b_A 118 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 168 (172)
T ss_dssp TSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEE
T ss_pred cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEE
Confidence 9999998877663 32 359999999999999999852 34444444544
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=77.34 E-value=3.1 Score=40.53 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=32.0
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (563)
|| |.++.....+| ||.|+|.+.+++.+++..- .....+..+.+
T Consensus 46 ~G-i~~~~~~~~~g---~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 89 (284)
T 3smz_A 46 YE-LKYCFVDKYKG---TAFVTLLNGEQAEAAINAFHQSRLRERELSV 89 (284)
T ss_dssp SC-EEEEEEETTTT---EEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cC-CEEEEEecCCC---EEEEEeCCHHHHHHHHHHcCCCeeCCeEEEE
Confidence 89 88888866666 9999999999999999752 23344444444
No 194
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.16 E-value=1.3 Score=37.51 Aligned_cols=35 Identities=9% Similarity=0.320 Sum_probs=25.6
Q ss_pred eeecceEEEeecC-----Cc-eeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLP-----GQ-THFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~-----~~-~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|. +..-... |+ .-||.|||.+.+++.+++...
T Consensus 32 ~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 32 FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 99998 4332221 11 249999999999999999865
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=76.99 E-value=1.7 Score=36.53 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=32.7
Q ss_pred eeecceEEEeecCC-----ceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPG-----QTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~-----~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (563)
||+|.+|....... ..-||-|||++.+++.+++..-. ...++..|.+
T Consensus 39 ~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v 91 (105)
T 3v4m_A 39 YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVT 91 (105)
T ss_dssp TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 99999998765531 12499999999999999987532 3333334444
No 196
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=76.96 E-value=1.3 Score=40.96 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=33.5
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|..+....+. | ..-||.|+|.+.+++.+++..-. ...++..|.|.
T Consensus 112 ~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 112 FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 9999988775543 2 12499999999999999998532 34444445553
No 197
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=76.70 E-value=2.4 Score=37.44 Aligned_cols=36 Identities=8% Similarity=0.219 Sum_probs=29.0
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|..+.+..+. |. ..||.|||.+.+++.+++..-
T Consensus 113 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 113 YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 9999988776654 22 359999999999999998753
No 198
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=76.61 E-value=2.6 Score=39.60 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=29.3
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhcC
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKCG 79 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~~ 79 (563)
||+|.++..-.++ | ..-||.|||.+.+++.+++..-.
T Consensus 39 ~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~ 78 (213)
T 4f02_A 39 AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 78 (213)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh
Confidence 9999988765543 3 23599999999999999997643
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=76.21 E-value=2.7 Score=36.27 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=32.9
Q ss_pred eeecceEEEeecCC------c-eeEEEEEeCCHHHHHHHHhhcC-ccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPG------Q-THFVIVEMKDSQVTRRILNKCG-HLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~------~-~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (563)
||+|.+|+...+.. . .-|+-|+|.+.+++.+++..=. ...++-.|.+
T Consensus 49 ~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v 103 (118)
T 3ue2_A 49 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 103 (118)
T ss_dssp TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 99999988776541 1 1499999999999999987532 3333434444
No 200
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.15 E-value=3.2 Score=34.71 Aligned_cols=48 Identities=8% Similarity=0.162 Sum_probs=30.6
Q ss_pred eeecceEEE--eecCC-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHH--YTLPG-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~--~~~~~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||.|..+.. +...| ...||.|||.+.+++.+++..- .+..++..|.|.
T Consensus 49 ~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 49 FQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp HHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred hCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 899854321 11122 1259999999999999999753 344455555554
No 201
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.09 E-value=2.9 Score=35.56 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=37.3
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceeccC
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRS 91 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k~ 91 (563)
=|+|.+|.... .-|||+|.+.+.++.+|....|..++..+-|+|
T Consensus 37 GG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 37 GGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 57888888643 478999999999999999999988887777775
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=76.02 E-value=1.3 Score=42.24 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=35.0
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++.+..++. -||.|||.+.+++.++++.- .....+..|.|.
T Consensus 59 ~G~i~~v~i~~~~~--g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 59 YGDVQRVKILFNKK--ENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp HTCEEEEEECCTTS--CCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCeEEEEEEECCC--CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 89999988876652 49999999999999999743 344455566664
No 203
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=75.83 E-value=1.6 Score=38.64 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=32.6
Q ss_pred eee---cceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGT---VQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~---i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||. |.++.+-.++ |+ .-||.|||++.+++.+++.-..+..++..|.|.
T Consensus 68 ~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 68 CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 898 7776554332 32 249999999999999999843344445455553
No 204
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=75.38 E-value=3.4 Score=36.23 Aligned_cols=35 Identities=6% Similarity=0.147 Sum_probs=28.6
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhh
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNK 77 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~ 77 (563)
||+|..+.+..+. | ...||.|||.+.+++.+++..
T Consensus 112 ~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 112 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 9999988776554 3 246999999999999999885
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=74.88 E-value=1.7 Score=37.33 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=34.2
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.+|..++..++ -|+.|+|++.+++.+++..- ....+|..|.+.
T Consensus 41 fG~V~~v~i~~~~~~-G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~ 88 (114)
T 3s6e_A 41 HGGVIHIYVDKNSAQ-GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAA 88 (114)
T ss_dssp TTCCSEEEECTTCTT-CCEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCEEEEEEecCCCc-EEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 999999998776421 38999999999999998753 233444445443
No 206
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=74.07 E-value=2.7 Score=36.83 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=33.5
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (563)
||+|.++....+. |. .-||.|+|.+.+++.+++..- ....++..|.|
T Consensus 111 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 111 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 8999988776543 32 249999999999999999853 23344444444
No 207
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=73.28 E-value=2.8 Score=44.48 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=34.5
Q ss_pred eeecceEEEeecC--Cc-eeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--GQ-THFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~~-~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..|.+..++ |+ ..||.|+|.+.+++.+|+..- ....++..|.|.
T Consensus 126 ~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 126 YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 9999988776542 21 359999999999999999763 344455555554
No 208
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=72.91 E-value=4.1 Score=35.62 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=32.0
Q ss_pred eeecceE--------EEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSM--------HHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~--------~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+ ..........||.|+|.+.+++.+++..- ....++..|.|.
T Consensus 69 ~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 125 (143)
T 3egn_A 69 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ 125 (143)
T ss_dssp GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred hCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 9998763 22222223469999999999999999853 344445455554
No 209
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=72.66 E-value=1.5 Score=40.30 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=32.4
Q ss_pred ee-ecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCC-Ccceec
Q psy10458 43 FG-TVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDK-SQVIPV 89 (563)
Q Consensus 43 ~G-~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~-~~~~~~ 89 (563)
|| +|..+....... .||.|||.+.+++.+++..-. ...+ +..|.|
T Consensus 144 ~G~~v~~v~i~~~~~--g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 144 NGGVVKGFKFFQKDR--KMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp TTSCCCEEEESSTTS--SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred cCCCceEEEEEeCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 89 999988855332 499999999999999988533 2233 444444
No 210
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=72.46 E-value=15 Score=37.56 Aligned_cols=131 Identities=13% Similarity=0.055 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccchhhcccccCCcchHHHHHHHHHHHH
Q psy10458 161 FLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGD 240 (563)
Q Consensus 161 ~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~ 240 (563)
..+...|.+.+...-|++.+.+-||+.=|-.. ..|||+++..++..... .+ . ..++..+-+
T Consensus 156 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~---------~~------~---~~l~~~v~~ 216 (335)
T 2fmp_A 156 LQMQDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSES---------TK------Q---PKLLHQVVE 216 (335)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSC---------BC------S---SCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccc---------cc------h---hhhHHHHHH
Confidence 34556777777788899999999999988766 55999999877531100 00 0 012333334
Q ss_pred HHHhhCCCCCCCCCCCceeeEEecCCCeeEE-EEeecC-----CcceEEEeecchhhhhhHHHHHHHhhcCCCchhHHHH
Q psy10458 241 LLQLFLPGCSQLFLPGCSQVKRILGARVPII-KYNHDM-----SALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFT 314 (563)
Q Consensus 241 ~L~~~~p~~s~~~~~g~~~V~~I~~ARVPII-Kf~~~~-----~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr~r~Lv~~ 314 (563)
.|... + .+..+......++=+| ++.... .++.|||-+-..... -+-|++.=++ ....+-
T Consensus 217 ~l~~~-~--------~v~~~l~~g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~-~~aLl~fTGS-----~~fnr~ 281 (335)
T 2fmp_A 217 QLQKV-H--------FITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQY-YCGVLYFTGS-----DIFNKN 281 (335)
T ss_dssp HHHHT-T--------SEEEEEEECSSEEEEEECCCCCTTCCCCCCEEEEEEECCGGGH-HHHHHHHHCC-----HHHHHH
T ss_pred HHHhC-C--------cceeeeecCCceEEEEEEeCCcccccCCCceEEEEEEECHHHH-HHHHHHhhCC-----HHHHHH
Confidence 44442 2 4444444444544333 222111 289999988765333 3444444332 133467
Q ss_pred HHHHHHHcCCC
Q psy10458 315 IKKWAKDINLT 325 (563)
Q Consensus 315 IK~Wak~~gL~ 325 (563)
++.||+.+|+.
T Consensus 282 lR~~A~~kG~k 292 (335)
T 2fmp_A 282 MRAHALEKGFT 292 (335)
T ss_dssp HHHHHHHTTEE
T ss_pred HHHHHHHcCCc
Confidence 99999998774
No 211
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=72.46 E-value=1.9 Score=39.31 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=35.0
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|..+....+. | ..-||.|||.+.+++.+++..- ....++..|.|+
T Consensus 138 ~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 138 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp BSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 9999998877663 2 2369999999999999999852 344445455554
No 212
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=72.41 E-value=1.8 Score=41.17 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=32.8
Q ss_pred ee-ecceEEEee-cCCceeEEEEEeCCHHHHHHHHhhcC-ccCC-Ccceecc
Q psy10458 43 FG-TVQSMHHYT-LPGQTHFVIVEMKDSQVTRRILNKCG-HLDK-SQVIPVR 90 (563)
Q Consensus 43 ~G-~i~~~~~~~-~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~-~~~~~~k 90 (563)
|| +|..+.... .+| ||.|||.+.+++.+++..-. ...+ +..|.|.
T Consensus 175 ~G~~i~~v~i~~~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 175 NGGVVKGFKFFQKDRK---MALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp TSCCEEEEEECSSSTT---CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred cCCCeeEEEEEECCCc---EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 89 999988855 445 99999999999999988532 3333 4445543
No 213
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.44 E-value=3.4 Score=33.69 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=24.0
Q ss_pred eEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 59 HFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 59 ~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
-||.|||.+.+++.+++.. ..+..++..|.|+
T Consensus 55 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 55 GFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 5999999999999999975 3344455555554
No 214
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=70.95 E-value=2 Score=38.54 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=31.2
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||.|..+ .......-||.|||.+.+++.+++..- .+..++..|.|+
T Consensus 123 ~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 123 ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp CSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred cCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 8888777 222222359999999999999999853 344445455554
No 215
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=70.90 E-value=3.7 Score=39.98 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=34.4
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
||+|.++...+......||.|||.+.+++.+++..-. ....+..|.|.
T Consensus 37 ~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 37 FGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred cCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 9999998876533223599999999999999996543 34444455554
No 216
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=69.26 E-value=2 Score=42.05 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=33.9
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++....+. | ...||.|+|.+.+++.+++..- ....++..|.|.
T Consensus 209 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 209 VHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp SSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 9999887765542 3 2469999999999999998853 244455445553
No 217
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=66.13 E-value=3.2 Score=36.88 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=29.2
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceec
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~ 89 (563)
|| |.+|..-.++ |+ .-||.|||.+.+++.+++....+..++..|.|
T Consensus 70 ~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 70 LN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 117 (139)
T ss_dssp CC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred cC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence 88 5566543332 21 23999999999999999944334444444444
No 218
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=63.68 E-value=3.3 Score=37.95 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=34.3
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhh-cCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNK-CGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~-~~~~~~~~~~~~k 90 (563)
||+|.++.+..++. -||.|||.+.+++.+++.. .....++..+.|.
T Consensus 28 ~G~i~~v~i~~~~~--g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 28 YGDVQRVKILFNKK--ENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp TCCCSEEECSTTCS--SCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred cCCEEEEEEEeCCC--CEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 89999987766542 4999999999999999974 3344455556554
No 219
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.47 E-value=6.4 Score=33.23 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=30.9
Q ss_pred eeecceEEEeecC-Cc-eeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP-GQ-THFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~~-~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
| .|.+|.+-.++ |+ .-||.|||.+.+++.+++....+..++..|.|.
T Consensus 40 ~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 40 L-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVS 88 (109)
T ss_dssp S-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEE
T ss_pred C-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 5 56666553222 21 249999999999999999654455555555554
No 220
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.77 E-value=5.7 Score=33.23 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=32.5
Q ss_pred ceee--e-eecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceecc
Q psy10458 39 RSIL--F-GTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPVR 90 (563)
Q Consensus 39 rsv~--~-G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~k 90 (563)
+.+| | |+|.+|. .| +|.|+|.+.+++.+++.+=+ ....+..|++.
T Consensus 31 ~~lF~~yGG~Vl~Vt----gG---~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 31 RRLSDNCGGKVLSIT----GC---SAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp HHHHHTTTCCEEECC----TT---CEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred HHHHHHcCCeeEEEe----cC---EEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4456 9 5999983 36 99999999999999987643 44444455553
No 221
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.16 E-value=6.1 Score=32.74 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=30.8
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||.|..+-+-.++ +.|||.+.+++.++++=.....++..++|+
T Consensus 39 ~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 39 FGEVILIRFVEDK-----MWVTFLEGSSALNVLSLNGKELLNRTITIA 81 (91)
T ss_dssp TCCEEEEEECSSS-----EEEEESSHHHHHHGGGGTTCEETTEEEEEE
T ss_pred CCCeEEEEEecCC-----EEEEECChHHHHHHHhcCCeEeCCeEEEEE
Confidence 9999888764432 799999999999999743344444455554
No 222
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=60.87 E-value=23 Score=36.08 Aligned_cols=127 Identities=12% Similarity=0.037 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccchhhcccccCCcchHHHHHHHHHHHH
Q psy10458 161 FLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGD 240 (563)
Q Consensus 161 ~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~ 240 (563)
..+...|.+.++..-|++.+.+-||+.=|-.. ..|||+++..++.... ..+|..+-+
T Consensus 153 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~----------------------~~ll~~v~~ 209 (335)
T 2bcq_A 153 TEIEQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH----------------------RGIFSRLLD 209 (335)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT----------------------TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhh----------------------hhHHHHHHH
Confidence 34566777778888899999999999988766 4599999987763110 012333444
Q ss_pred HHHhhCCCCCCCCCCCceeeEEe----c-CCCe-eEEEEee-cCCcceEEEeecchhhhhhHHHHHHHhhcCCCchhHHH
Q psy10458 241 LLQLFLPGCSQLFLPGCSQVKRI----L-GARV-PIIKYNH-DMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVF 313 (563)
Q Consensus 241 ~L~~~~p~~s~~~~~g~~~V~~I----~-~ARV-PIIKf~~-~~~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr~r~Lv~ 313 (563)
.|... + .+..+... . .-++ =|.++.. ...++.|||-+-..... -+-|++.=++ ....+
T Consensus 210 ~l~~~-~--------~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~~~rVDl~~vp~~~~-g~ALl~fTGS-----~~fnr 274 (335)
T 2bcq_A 210 SLRQE-G--------FLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEF-ACALLYFTGS-----AHFNR 274 (335)
T ss_dssp HHHHT-T--------CEEEEEECCTTSTTCCEEEEEECCSSTTCCCEEEEEEECCGGGH-HHHHHHHHCC-----HHHHH
T ss_pred HHHhC-C--------chHHHhhccccCCCCceEEEEEEccCCCCCceEEEEEEECHHHH-HHHHHHhhCC-----HHHHH
Confidence 44442 2 23332111 0 1121 1112111 12689999988765333 4444544333 13346
Q ss_pred HHHHHHHHcCCC
Q psy10458 314 TIKKWAKDINLT 325 (563)
Q Consensus 314 ~IK~Wak~~gL~ 325 (563)
.+|.||+.+|+.
T Consensus 275 ~lR~~A~~~G~k 286 (335)
T 2bcq_A 275 SMRALAKTKGMS 286 (335)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHcCCC
Confidence 799999998774
No 223
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=57.68 E-value=6.8 Score=34.15 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=23.0
Q ss_pred eEEEEEeCCHHHHHHHHhhcCccCCCcceec
Q psy10458 59 HFVIVEMKDSQVTRRILNKCGHLDKSQVIPV 89 (563)
Q Consensus 59 ~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~ 89 (563)
-||.|||.+.+++.+++.......++..|.|
T Consensus 85 GfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 85 GEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp SEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred eEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 4999999999999999986444444444444
No 224
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.01 E-value=6.7 Score=32.75 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=31.0
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
||.|..+.+-.++ +.|+|.+.+++.++++-.....++..++|+
T Consensus 48 ~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 48 YGTIVLVRINQGQ-----MLVTFADSHSALSVLDVDGMKVKGRAVKIS 90 (95)
T ss_dssp HSCCSEEEEETTE-----EEEECSCSHHHHHHHHGGGSEETTEEEEEE
T ss_pred CCCEEEEEEecCc-----EEEEEcChHHHHHHHhcCCeeeCCeEEEEe
Confidence 9999888763322 899999999999999744444445455554
No 225
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=56.90 E-value=4.7 Score=34.77 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=24.8
Q ss_pred eeecce--EE--EeecCCc-eeEEEEEeCCHHHHHHHHhhcC
Q psy10458 43 FGTVQS--MH--HYTLPGQ-THFVIVEMKDSQVTRRILNKCG 79 (563)
Q Consensus 43 ~G~i~~--~~--~~~~~~~-~~~~~vef~~~~~~~~~~~~~~ 79 (563)
||.|.. |. .++..|+ .-||.|||.+. ++.+++..-.
T Consensus 47 ~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~ 87 (131)
T 2m2b_A 47 YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ 87 (131)
T ss_dssp GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT
T ss_pred hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc
Confidence 999954 44 3332232 24999999999 8888877543
No 226
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=55.55 E-value=6.9 Score=37.86 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.5
Q ss_pred eeecceEEEeecC-C-ceeEEEEEeCCHHHHHHHHhhc
Q psy10458 43 FGTVQSMHHYTLP-G-QTHFVIVEMKDSQVTRRILNKC 78 (563)
Q Consensus 43 ~G~i~~~~~~~~~-~-~~~~~~vef~~~~~~~~~~~~~ 78 (563)
||+|.++.+..+. | ...||.|||.+.+++.+++..-
T Consensus 120 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 120 FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 9999887665442 2 2469999999999999998874
No 227
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=55.24 E-value=53 Score=35.80 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccchhhcccccCCcchHHHHHHHHHHHHH
Q psy10458 162 LVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDL 241 (563)
Q Consensus 162 ~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~~ 241 (563)
.+...|.+.++..-|.+++.+-||+.=|-.+ ..|||+++..++. ..++ +.
T Consensus 165 ~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~-------------------------~~v~----~~ 214 (575)
T 3b0x_A 165 SLARSLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASREG-------------------------ERAV----EG 214 (575)
T ss_dssp HHHHHHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECSSH-------------------------HHHH----HH
T ss_pred HHHHHHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCCCH-------------------------HHHH----HH
Confidence 4556777777777788999999999988766 4599999987752 0122 22
Q ss_pred HHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEeecchhhhhhHHHHHHHhhcCCCchhHHHHHHHHHHH
Q psy10458 242 LQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKD 321 (563)
Q Consensus 242 L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr~r~Lv~~IK~Wak~ 321 (563)
|.. .| .+..+..-...++-+ +. ..|+.|||-+-.... .-+-|++.=++. ...+-+|.||+.
T Consensus 215 l~~-~~--------~~~~~~~~g~~k~~~-~~---~~~~rvDl~~~~~~~-~~~al~~~TGs~-----~~n~~lR~~A~~ 275 (575)
T 3b0x_A 215 FVR-LP--------QVKEVYAKGKERATV-FL---KNGLQVDLRVVPPES-YGAGLQYLTGSA-----AHSIRLRALAQE 275 (575)
T ss_dssp HHT-ST--------TEEEEEEECSSEEEE-EE---TTSCEEEEEEECGGG-HHHHHHHHHCCH-----HHHHHHHHHHHH
T ss_pred HHh-Cc--------chhhHhhcCCCceEE-Ec---cCCcEEEEEEECHHH-HHHHHHHhhCCH-----HHHHHHHHHHHH
Confidence 332 23 444433333333333 22 368999998876533 344555544332 344679999999
Q ss_pred cCCC
Q psy10458 322 INLT 325 (563)
Q Consensus 322 ~gL~ 325 (563)
+|+.
T Consensus 276 ~g~~ 279 (575)
T 3b0x_A 276 KGLK 279 (575)
T ss_dssp TTCE
T ss_pred cCCC
Confidence 8775
No 228
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=50.91 E-value=10 Score=36.85 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=32.9
Q ss_pred eeecceEEEeecC---C-ceeEEEEEeCCHHHHHHHHhhc-CccCCCcceecc
Q psy10458 43 FGTVQSMHHYTLP---G-QTHFVIVEMKDSQVTRRILNKC-GHLDKSQVIPVR 90 (563)
Q Consensus 43 ~G~i~~~~~~~~~---~-~~~~~~vef~~~~~~~~~~~~~-~~~~~~~~~~~k 90 (563)
||+|.++....+. | ...||.|+|.+.+++.+++ .- ....++..|.|.
T Consensus 235 ~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 235 FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 9999988775542 2 2369999999999999999 43 344445455543
No 229
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=46.34 E-value=18 Score=33.38 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=60.3
Q ss_pred CCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccchhhcccccCCcchHHHHHHHHHHHHHHHh--hCCCCCCC
Q psy10458 175 FPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQL--FLPGCSQL 252 (563)
Q Consensus 175 fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~l~~~~k~~~~~~R~~~~~~L~~l~~~L~~--~~p~~s~~ 252 (563)
+|++++.+-||+.=|-..- .|||+++..++. . . +-+.|.. . +
T Consensus 29 ~~g~~v~iaGS~RRgket~-gDiDiLit~~~~-~------------------------~----v~~~L~~~~~-~----- 72 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKML-NDVDLLIIVPEK-K------------------------L----LKHVLPNIRI-K----- 72 (174)
T ss_dssp ECTTTEEEEEHHHHTCSEE-CCEEEEEEESSH-H------------------------H----HHTSSSEEEE-S-----
T ss_pred CCCcEEEEeccccCCCCCC-CCEEEEEecCCH-H------------------------H----HHHHHHhccC-C-----
Confidence 5789999999999987664 499999987652 0 0 1111111 1 1
Q ss_pred CCCCce-eeEEecCCCeeEEEEeecCCcceEEEeecchhhhhhHHHHHHHhhcCCCchhHHHHHHHHHHHcCCC
Q psy10458 253 FLPGCS-QVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLT 325 (563)
Q Consensus 253 ~~~g~~-~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr~r~Lv~~IK~Wak~~gL~ 325 (563)
.+. ++..-...++=+ ++.....++.|||-+-..... .+.|++.=++ ......++.||+.+|+.
T Consensus 73 ---~v~~~~l~~g~~k~~~-~l~~~~~~~rVDl~~vp~~~f-g~ALl~fTGS-----k~hn~~lR~~A~~kG~~ 136 (174)
T 1jaj_A 73 ---GLSFSVKVCGERKCVL-FIEWEKKTYQLDLFTALAEEK-PYAIFHFTGP-----VSYLIRIRAALKKKNYK 136 (174)
T ss_dssp ---SCEEEEEEETTTEEEE-EEESSSCCEEEEEEEEETTCH-HHHHHHHHSC-----HHHHHHHHHHHHHTTEE
T ss_pred ---ceeHhHeecCCCeEEE-EeCCCCCceEEEEEEeCHHHH-HHHHHHhHCC-----HHHHHHHHHHHHHcCCC
Confidence 233 332222333222 222112789999988765333 3444443332 13346789999998764
No 230
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=45.68 E-value=12 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.3
Q ss_pred eeecceEEEeecCC-------ceeEEEEEeCCHHHHHHHHhhcC-ccCCCcceec
Q psy10458 43 FGTVQSMHHYTLPG-------QTHFVIVEMKDSQVTRRILNKCG-HLDKSQVIPV 89 (563)
Q Consensus 43 ~G~i~~~~~~~~~~-------~~~~~~vef~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (563)
||.|.++......+ ..-++.|||++.+++.+++..-. ...+|..|.+
T Consensus 153 ~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 99999988764331 12499999999999999987532 3333434443
No 231
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=45.24 E-value=9.3 Score=33.96 Aligned_cols=25 Identities=12% Similarity=0.482 Sum_probs=18.4
Q ss_pred eeecceEEEeecC--C-ceeEEEEEeCC
Q psy10458 43 FGTVQSMHHYTLP--G-QTHFVIVEMKD 67 (563)
Q Consensus 43 ~G~i~~~~~~~~~--~-~~~~~~vef~~ 67 (563)
||+|.++-...+. | ..-|+.|||.+
T Consensus 30 fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 30 YGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp TSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 9999886665555 3 24799999996
No 232
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=42.11 E-value=23 Score=31.19 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=23.6
Q ss_pred eEEEEEeCCHHHHHHHHhhcCccCCCcceecc
Q psy10458 59 HFVIVEMKDSQVTRRILNKCGHLDKSQVIPVR 90 (563)
Q Consensus 59 ~~~~vef~~~~~~~~~~~~~~~~~~~~~~~~k 90 (563)
-||.|+|.+.+++.+++.-......+..+.|+
T Consensus 55 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 55 KFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp TEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred cEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 39999999999999999533344445555554
No 233
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=38.88 E-value=34 Score=29.62 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=36.4
Q ss_pred eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcCccCC-CcceeccC
Q psy10458 43 FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDK-SQVIPVRS 91 (563)
Q Consensus 43 ~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~~~~~-~~~~~~k~ 91 (563)
||+|..+.+ ...+ +.+-|.|++..++.+||+......+ ...|-|++
T Consensus 47 ~G~Iv~~~~-~~~~--NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 47 YGNILKHVM-SNTG--NWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp TSCEEEEEE-CSSS--SEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred hCcEEEecc-CCCC--CeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 999999886 3344 8999999999999999998775544 45566664
No 234
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=34.53 E-value=1.1e+02 Score=27.63 Aligned_cols=41 Identities=12% Similarity=-0.038 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcC-CCceEEEEcceec---CCCCCCCccceeecc
Q psy10458 163 VAYQVELALSGLF-PLCAIFPFGSSVN---NFGKLGCDLDLVLQL 203 (563)
Q Consensus 163 v~~~L~~il~~~f-p~~~V~pFGS~~~---Gl~~~~SDLDl~l~~ 203 (563)
+...|..+...+- -++.-..-||++. |.....-|||+++..
T Consensus 18 ~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~ 62 (169)
T 2fcl_A 18 YLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQTDE 62 (169)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEecc
Confidence 3344444444433 2688999999974 677778899999943
No 235
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.57 E-value=38 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=26.4
Q ss_pred eecceEEEeecCCceeEEEEEeCCHHHHHHHH
Q psy10458 44 GTVQSMHHYTLPGQTHFVIVEMKDSQVTRRIL 75 (563)
Q Consensus 44 G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~ 75 (563)
|+|.++..-.++| =|||||.+...+.++.
T Consensus 51 g~i~KI~L~pDH~---GAivef~d~~~AgKas 79 (117)
T 2l9w_A 51 KDIRKILLVSDFN---GAIIIFRDSKFAAKML 79 (117)
T ss_dssp TTCSEEEEETTTT---EEEEECSCHHHHHHHH
T ss_pred cceeEEEEecCCC---ceEEEEccchhhHHHH
Confidence 9999999988887 7999999999999874
No 236
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=28.11 E-value=40 Score=34.98 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccC
Q psy10458 161 FLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQ 206 (563)
Q Consensus 161 ~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~ 206 (563)
..+...|.+.++.+-|++.+.+-||+.=|-.. ..|||+++..++.
T Consensus 180 ~~ia~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~ 224 (381)
T 1jms_A 180 EAVSMLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEA 224 (381)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCc
Confidence 34556777777788899999999999998776 4599999987763
No 237
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=27.00 E-value=65 Score=24.03 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=21.6
Q ss_pred CchhHHHHHHHHHHHcCCCCCCCCCCcCh
Q psy10458 307 RVRPLVFTIKKWAKDINLTNPTPGRWITN 335 (563)
Q Consensus 307 r~r~Lv~~IK~Wak~~gL~~~~~G~~LsS 335 (563)
.-+.-...||.||+..|+.-+..|. |+.
T Consensus 10 ~~~~~~~aIR~WAr~nG~~VsdRGR-Ip~ 37 (55)
T 2kng_A 10 IDREQSAAIREWARRNGHNVSTRGR-IPA 37 (55)
T ss_dssp CSSTHHHHHHHHHHHTTCCCCSSSC-CCH
T ss_pred CCccChHHHHHHHHHcCCcCCCCCC-CCH
Confidence 3333456899999999999888887 664
No 238
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=26.99 E-value=35 Score=35.08 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccC
Q psy10458 161 FLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQ 206 (563)
Q Consensus 161 ~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~ 206 (563)
..+...|.+.++..-|++.+.+-||+.=|-.. ..|||+++..++.
T Consensus 160 ~~i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~ 204 (360)
T 2ihm_A 160 EALQQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEE 204 (360)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSST
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCCh
Confidence 34567777778888899999999999998766 5599999987763
No 239
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=23.34 E-value=51 Score=32.81 Aligned_cols=42 Identities=12% Similarity=-0.213 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCC-ceEEEEcceecCC--CCCCCccceeecccc
Q psy10458 163 VAYQVELALSGLFPL-CAIFPFGSSVNNF--GKLGCDLDLVLQLDL 205 (563)
Q Consensus 163 v~~~L~~il~~~fp~-~~V~pFGS~~~Gl--~~~~SDLDl~l~~~~ 205 (563)
+++.|.++.+. -+. -.|..-||.+++- .-.-||+|+++...+
T Consensus 9 m~~~i~~~a~~-d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 9 MMDIFLDFALN-DERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHcC-CcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 44555555543 233 3588999999966 667799999999876
Done!