RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10458
(563 letters)
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA
binding domain, poly(A polymerase, mitochondria,
transferase; 3.10A {Homo sapiens}
Length = 464
Score = 244 bits (624), Expect = 6e-75
Identities = 139/495 (28%), Positives = 217/495 (43%), Gaps = 99/495 (20%)
Query: 24 KYFVPSIEYRRLEAQRSIL------------------FGTVQSMHHYTLPGQTHFVIVEM 65
+ F RR +AQR++L FG + + Y + +VE
Sbjct: 39 RRFSEMQNERREQAQRTVLIHCPEKISENKFLKYLSQFGPINNHFFY--ESFGLYAVVEF 96
Query: 66 KDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPT 125
+ + N +
Sbjct: 97 CQKESIGSLQNGTH------------------------------------TPXXXXXXXS 120
Query: 126 EDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGS 185
+ E L +I Q+ TL ++ + NT+LR+L +E + FP C + PFGS
Sbjct: 121 NKQLFELLCYAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGS 180
Query: 186 SVNNFGKLGCDLDLVLQLD---LQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLL 242
SVN FGKLGCDLD+ L LD S LM ++ SER T + L +G+ L
Sbjct: 181 SVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECL 240
Query: 243 QLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFG 302
F PGC V++IL AR P+++++H S +C L+ N AL +ELLY++G
Sbjct: 241 DHFGPGCVG--------VQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIYG 292
Query: 303 EIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVK--VLPPLKLLID 360
+D RVR LVF+++ WA+ +LT+ PG WITNFSLT++V+F+LQ +LP L L
Sbjct: 293 ALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKT 352
Query: 361 EASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGI 420
A +D+ + +G NCTFVRD+++++ P Q+T++L LL FFE++ +
Sbjct: 353 LADAEDKCVI-EGNNCTFVRDLSRIK-----PSQNTETLELLLKEFFEYFGNFA------ 400
Query: 421 SLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNK 480
VS +L++ R ++W L+ ++
Sbjct: 401 ----------------XXXXXXXXXXXXXXXVSQSQLQKFVDLARESAWILQQE--DTDR 442
Query: 481 PSHTPSESWGLLELF 495
PS + + WGL+ L
Sbjct: 443 PSISSNRPWGLVSLL 457
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like
nucleotidyl transferase, terminal uridi transferase,
UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe
972h-} PDB: 4e7x_A* 4e80_A
Length = 405
Score = 181 bits (460), Expect = 9e-52
Identities = 81/370 (21%), Positives = 142/370 (38%), Gaps = 67/370 (18%)
Query: 139 ITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLD 198
T+ ++N K++D + + + L L + P + FGS + D+D
Sbjct: 44 FTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMD 103
Query: 199 LVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCS 258
L + +D + Q D + +
Sbjct: 104 LCVLMDSRVQSDTIALQFYEE---------------------------------LIAEGF 130
Query: 259 QVKRILGARVPIIKYNHDM-----SALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVF 313
+ K + AR+PIIK D ++ +CD+ N A++ LL + ++D R++P+V
Sbjct: 131 EGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVL 190
Query: 314 TIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDG 373
+K WAK + +P G ++++ L+VL+YL V P L+ + DG
Sbjct: 191 LVKHWAKRKQINSPYFG-TLSSYGYVLMVLYYLIHVIKPPVFPNLLLSP--LKQEKIVDG 247
Query: 374 VNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYL-GSPIPKP 431
+ F + + P Q+ SL +LL GFF FY+ +++ + ++ + K
Sbjct: 248 FDVGFDDKLEDIP-----PSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQ 302
Query: 432 EHG-------------------ALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLE 472
E G L I +P E NV + VS L R++ E AS L
Sbjct: 303 EKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLN 362
Query: 473 STANSNNKPS 482
S + S
Sbjct: 363 SRSYPIPYDS 372
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP
binding, transferase; HET: UTP; 2.28A
{Schizosaccharomyces pombe}
Length = 340
Score = 179 bits (454), Expect = 1e-51
Identities = 80/370 (21%), Positives = 140/370 (37%), Gaps = 67/370 (18%)
Query: 139 ITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLD 198
T+ ++N K++D + + + L L + P + FGS + D+D
Sbjct: 7 FTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMD 66
Query: 199 LVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCS 258
L + +D + L +
Sbjct: 67 LCVLMD----SRVQSDTIALQFYEEL-----------------------------IAEGF 93
Query: 259 QVKRILGARVPIIKYNHDM-----SALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVF 313
+ K + AR+PIIK D ++ +CD+ N A++ LL + ++D R++P+V
Sbjct: 94 EGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVL 153
Query: 314 TIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDG 373
+K WAK + +P G ++++ L+VL+YL V P L+ + DG
Sbjct: 154 LVKHWAKRKQINSPYFG-TLSSYGYVLMVLYYLIHVIKPPVFPNLLLSP--LKQEKIVDG 210
Query: 374 VNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISL-YLGSPIPKP 431
+ F + + P Q+ SL +LL GFF FY+ +++ + ++ + K
Sbjct: 211 FDVGFDDKLEDIP-----PSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQ 265
Query: 432 EHG-------------------ALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLE 472
E G L I +P E NV + VS L R++ E AS L
Sbjct: 266 EKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLN 325
Query: 473 STANSNNKPS 482
S + S
Sbjct: 326 SRSYPIPYDS 335
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase,
UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma
brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A*
2q0g_A*
Length = 353
Score = 177 bits (450), Expect = 6e-51
Identities = 63/349 (18%), Positives = 121/349 (34%), Gaps = 52/349 (14%)
Query: 139 ITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNN-FGKLGCDL 197
+ + + D++TR V ++ + PL ++ FGS+V + G D+
Sbjct: 28 VGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDV 87
Query: 198 DLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGC 257
D V+ ++ + L + +++
Sbjct: 88 DFVVLNK-------TDVEDGKGGDAATQVAKGLQADILAKLARVIRQK---------HLS 131
Query: 258 SQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKK 317
V+ + RVP+++ A++ D++ + + LL + E + R L +IK+
Sbjct: 132 WNVEEVRRTRVPVVRVKGG-GAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKR 190
Query: 318 WAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCT 377
W+K L G IT++ L+V++YL L + + S + +
Sbjct: 191 WSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEE- 249
Query: 378 FVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFY-SQYDFNNQGISLYLGSPIPKPE---- 432
P L T + F F+ ++D + Q ISL K E
Sbjct: 250 --------------PADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWT 295
Query: 433 --------------HGALYINNPLERGLNVSKNVSFEELERLKVEVRNA 467
H I +P E LNV +NV+ + + L+ + A
Sbjct: 296 KSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKA 344
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA
UTP-binding, transferase; 1.56A {Trypanosoma brucei}
PDB: 3hiy_A 3hj1_A*
Length = 384
Score = 174 bits (441), Expect = 3e-49
Identities = 48/328 (14%), Positives = 113/328 (34%), Gaps = 31/328 (9%)
Query: 133 LASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGK 192
+ + + M + + ++ + + +V + FGS V+ F
Sbjct: 1 MVAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCT 60
Query: 193 LGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQL 252
D D+ L S L+ +E V + + +
Sbjct: 61 PHSDADISLTYR----------------------NFSPWLQGMERVDEQNNKRMTRFGKE 98
Query: 253 FLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVR-PL 311
+ R + AR+P++++ ++ + CD+S+ N+ + +++L ++
Sbjct: 99 ASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAY 158
Query: 312 VFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISE 371
+ +K W K + P + +F++T + L LQ + +LP E
Sbjct: 159 IHLVKAWGKAREVIAPERSTF-NSFTVTTMALMVLQELGLLPVFSKPTGE---FGELTVA 214
Query: 372 DGVNCTFVRDITKLQFHPSIPEQS-TDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPK 430
D + + ++ +++ L F E+Y++YDF+ +SL
Sbjct: 215 DAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRT 274
Query: 431 PEHGALYINNPL---ERGLNVSKNVSFE 455
+ + L + L K+++
Sbjct: 275 VYERVVRRHLELLGSRKRLEWEKHIAEH 302
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc
knuckle protein, RNA surveillance binds to TRF4P/AIR2P
heterodimer; 2.70A {Saccharomyces cerevisiae}
Length = 323
Score = 151 bits (381), Expect = 2e-41
Identities = 58/350 (16%), Positives = 113/350 (32%), Gaps = 85/350 (24%)
Query: 139 ITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLD 198
+T ++ + +R + A+ L+P + FGS + G D+D
Sbjct: 21 LTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDID 80
Query: 199 LVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCS 258
V+ + ++ +L ++ L+ +
Sbjct: 81 CVVTSE---------------------LGGKESRNNLYSLASHLK---------KKNLAT 110
Query: 259 QVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKW 318
+V+ + ARVPIIK+ S + +S + A+L+ + + +R LV +K++
Sbjct: 111 EVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQF 170
Query: 319 AKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTF 378
L N G + FS+ LV +L
Sbjct: 171 LHARRLNNVHTG-GLGGFSIICLVFSFLH------------------------------- 198
Query: 379 VRDITKLQFHPSIPEQS--TDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPKPEHG- 434
I + D+L LL FFE Y + +++ + G P+ P+
Sbjct: 199 -------MHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTW 251
Query: 435 ----------ALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLEST 474
+L I +P + N+S+ + +K A L +
Sbjct: 252 SAIQPIKNPFSLAIQDPGDESNNISRGSF--NIRDIKKAFAGAFDLLTNR 299
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl
transferase, editosome, transferase/RNA binding protein
complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4
d.218.1.10 PDB: 2b51_A* 2b56_A*
Length = 468
Score = 150 bits (380), Expect = 5e-40
Identities = 46/333 (13%), Positives = 104/333 (31%), Gaps = 64/333 (19%)
Query: 166 QVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLG 225
+ + + + G +D CR+ C S
Sbjct: 158 ALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTT----------YGCRIAIQCTS--- 204
Query: 226 SERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLS 285
+ Q + + D + ++ V +++ +M D+S
Sbjct: 205 --KEQMIEAIGFFPDGKIM------------TRGMREDYTRDVLDVRFVPEMFMYRWDIS 250
Query: 286 MTNLTALYMAELLYLFGEID-WRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLF 344
+ + L+ + R +K W K N+ + +T++++T++ ++
Sbjct: 251 FVGY-GVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGA-MLTSYAVTVMFIY 308
Query: 345 YLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLF 404
YL + + D + + + + + L LL
Sbjct: 309 YLLVTRQVL----------------WVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLH 352
Query: 405 GFFEFYS-QYDFNNQGISLYLGSPIPKPEHG-------------ALYINNPLE----RGL 446
GFF FY+ +D+ + +SL + + G I +P E GL
Sbjct: 353 GFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGL 412
Query: 447 NVSKNVSFEELERLKVEVRNASWTLESTANSNN 479
N+ +++ + + +K E A+ +E +N
Sbjct: 413 NLVRHLHPAKFQLVKQEFLRAAQCMERFLPTNA 445
Score = 37.9 bits (87), Expect = 0.007
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 25/126 (19%)
Query: 166 QVELALSGLFPLCAIFPFGSSVNN-FGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSL 224
Q++ P ++ GS V + G DLDL D Q
Sbjct: 47 QLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQ----------- 95
Query: 225 GSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDL 284
++R+ LR +++ ++P + L G ++ AR P++K
Sbjct: 96 -AKRTDKLRT------VIKRYVPHYLRNNLLGLTE------ARTPVVKLRFANDEKVARA 142
Query: 285 SMTNLT 290
T L+
Sbjct: 143 RYTPLS 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 5e-10
Identities = 85/583 (14%), Positives = 176/583 (30%), Gaps = 202/583 (34%)
Query: 37 AQRSILF--GTVQSMHHYTLPGQTHFVIVEMKDS------QVTRRILNKCGHLDKSQVIP 88
+ R + G+++ H +P + F+ ++++ + T + +
Sbjct: 5 STRPLTLSHGSLE--HVLLVPTASFFIASQLQEQFNKILPEPTEGF---AADDEPTTPAE 59
Query: 89 VRSPFLWFRANKN------------KTKLSD-ESDYAKINCDTHNV---FPPTEDH---- 128
+ FL + ++ L++ E+ Y + N D H + D
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQENDTTLVK 118
Query: 129 ----VRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFG 184
++ + + + N+ L G L AI FG
Sbjct: 119 TKELIKNYITARIMAKRPFDKKS--------NSAL-------FRAVGEGNAQLVAI--FG 161
Query: 185 SSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHL-ETVGDLLQ 243
G QG+ D F E LR L +T L+
Sbjct: 162 ------G----------------QGNTDDY---F-------EE----LRDLYQTYHVLVG 185
Query: 244 LFLPGCSQLFLPGCSQV---KRILGARVPIIKYNHDMSA-------LECDLSMT--NLTA 291
+ ++ +++ + I+++ + S L +S +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 292 L--YM--AELL-YLFGEIDWRVRPLVFTIKKWAKDINLT------NPTPGRWITNFSLTL 340
L Y+ A+LL + GE +R + ++ + +T + + + +
Sbjct: 246 LAHYVVTAKLLGFTPGE----LRSYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAI 300
Query: 341 LVLFY--LQSVKVLPPLKLLIDEASLKDRRISEDGVNCTF--VRDITKLQFHPSI----- 391
VLF+ ++ + P L + L+D + +GV + ++T+ Q +
Sbjct: 301 TVLFFIGVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 392 --PEQSTDSLTTLLFGFFEFYSQYDFNNQGISLY-------LGSPIPKPEHGALY-INNP 441
P ISL + P P+ +LY +N
Sbjct: 359 HLPAGKQVE---------------------ISLVNGAKNLVVSGP---PQ--SLYGLNLT 392
Query: 442 LER-----GLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELFK 496
L + GL+ S+ + F E +LK R L + P H+ LL
Sbjct: 393 LRKAKAPSGLDQSR-IPFSE-RKLKFSNR----FLPVAS-----PFHSH-----LL---- 432
Query: 497 KQNLSEKAKSVFFSEKSRPKERMVSVEDL----FSTETSEDSQ 535
A + + + + +D+ + T D +
Sbjct: 433 -----VPASDLINKDLVKNNVS-FNAKDIQIPVYDTFDGSDLR 469
Score = 52.4 bits (125), Expect = 4e-07
Identities = 90/614 (14%), Positives = 157/614 (25%), Gaps = 254/614 (41%)
Query: 9 SFSKALKDPSGNV------------LSKY--FVPS-IEYRRLEAQRSILFGTVQSMHHYT 53
F+K L +P+ + K+ +V S +E ++ +L + +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 54 LPGQ-THFVIVEMKDSQVTRRILNK---------CGHLDKSQVIPVRSPFLWFRA-NKNK 102
L G H + ++ T + K + S FRA +
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGN 153
Query: 103 TKLS-------------DE-----SDY------------------AKINCDTHNVFP--- 123
+L +E Y + D VF
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 124 ------------PTEDHVRECLASCNTI--TQQMTTLHNITKMNDINTRLRFLVAYQVEL 169
P +D++ SC I Q L Y V
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--------------------LAHYVVTA 253
Query: 170 ALSGLFPLCAIFPFGSSVNNF-GKLGCDLDLVLQLDLQSQGDNDQ--------CRLMFHC 220
L G P G + G G LV + + + ++F
Sbjct: 254 KLLGFTP-------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF- 305
Query: 221 KSSLGSERSQTLRHLETVGDLLQLFLPG-----CSQLFLPGCSQVKRILGARVPIIKYNH 275
+G + + +L+ L L + +Q
Sbjct: 306 ---IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ---------------- 346
Query: 276 DMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITN 335
++ ++ TN + L + + I+L N G N
Sbjct: 347 --EQVQDYVNKTN-SHLPAGKQVE----------------------ISLVN---GA--KN 376
Query: 336 F-------SLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRI--SEDGVNCTFVRDITKLQ 386
SL L L L+ K L D++ RI SE R KL+
Sbjct: 377 LVVSGPPQSLYGLNL-TLRKAKAPSGL----DQS-----RIPFSE--------R---KLK 415
Query: 387 FH----P-SIPEQSTDSLTTLLFGFFEFYSQY----------DFNNQGISL---YLGSPI 428
F P + P F+S D +S + P+
Sbjct: 416 FSNRFLPVASP----------------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 429 PKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHT---- 484
G+ + ++S+ + + + RL V+ W + K +H
Sbjct: 460 YDTFDGS----DLRVLSGSISERI-VDCIIRLPVK-----W----ETTTQFKATHILDFG 505
Query: 485 PSESWGLLELFKKQ 498
P + GL L +
Sbjct: 506 PGGASGLGVLTHRN 519
Score = 37.0 bits (85), Expect = 0.021
Identities = 45/272 (16%), Positives = 75/272 (27%), Gaps = 115/272 (42%)
Query: 306 WRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLV---LFYLQSV------KVLPPLK 356
+ RPL L++ + LLV F++ S K+LP
Sbjct: 4 YSTRPLT-----------LSHG-------SLEHVLLVPTASFFIASQLQEQFNKILPEPT 45
Query: 357 LLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQS----TDSLTTLLFGFFEFYSQ 412
+ + D + + F L + S+ E S D + L FE +
Sbjct: 46 ---EGFAADDEPTTPAELVGKF------LGYVSSLVEPSKVGQFDQVLNLCLTEFE--NC 94
Query: 413 YDFNN---------------------QGISLY------LGSPIPKPEHGALY--INNPLE 443
Y N + I Y P K + AL+ +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 444 R--------GLNVSKNVSFEELERL------KVE--VRNASWTLESTANSN--------- 478
+ G + FEEL L V ++ ++ TL +
Sbjct: 155 QLVAIFGGQGNT---DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 479 --------NKPSHTPSE--------SWGLLEL 494
PS+TP + S L+ +
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Score = 33.5 bits (76), Expect = 0.21
Identities = 50/300 (16%), Positives = 93/300 (31%), Gaps = 98/300 (32%)
Query: 9 SFSKALKDPSGNVLSKYFVPSIEYRRLEA--QRSILFGTVQ-SMHH-YTLPGQTH-FVIV 63
SF +++ ++ F I R EA S+ ++ S+ + +P + I
Sbjct: 291 SFFVSVR----KAITVLF--FIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SPMLSIS 342
Query: 64 EMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVF- 122
+ QV + HL + + + + +N + V
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEI----------------------SLVNGAKNLVVS 380
Query: 123 -PPTEDHVRECLASCNTITQQMTTLHNITKMNDIN-TRLRFLVAYQVELALSGLF-PLCA 179
PP + L N TL + ++ +R+ F + +L S F P+ +
Sbjct: 381 GPP------QSLYGLN------LTLRKAKAPSGLDQSRIPFS---ERKLKFSNRFLPVAS 425
Query: 180 IFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLG-----SERSQTLRH 234
PF S + L DL+ + DL + F+ + + LR
Sbjct: 426 --PFHSHL-----LVPASDLINK-DLVKNN------VSFN-AKDIQIPVYDTFDGSDLRV 470
Query: 235 LET--VGDLLQLFL------PGCSQL-------FLPGCSQ-----VKRIL---GARVPII 271
L ++ + +Q F PG + R G RV I+
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV-IV 529
Score = 33.1 bits (75), Expect = 0.30
Identities = 37/210 (17%), Positives = 60/210 (28%), Gaps = 89/210 (42%)
Query: 294 MAELLY--------LFGEIDWRVRP-LVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLF 344
M LY ++ D + F+I DI + NP L + F
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSIL----DIVINNPV----------NLTIHF 1676
Query: 345 YLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLF 404
+ K +RI E+ F + I ++ + T+ F
Sbjct: 1677 GGE-----------------KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 405 ----GFF---EF---------YSQY-DFNNQGI----------SLYLGSPIPKPEHGALY 437
G +F + + D ++G+ S LG E+ AL
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS--LG------EYAAL- 1770
Query: 438 INNPLERGLNVSK-NV-SFEELERLKVEVR 465
S +V S E L + V R
Sbjct: 1771 ----------ASLADVMSIESLVEV-VFYR 1789
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 8e-09
Identities = 89/602 (14%), Positives = 167/602 (27%), Gaps = 188/602 (31%)
Query: 28 PSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVI 87
PS+ R QR L+ Q Y V+R +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKY----------------NVSR----------LQPYL 138
Query: 88 PVRSPFLWFRANKN----------KTKLSDE--SDYAKINCDTHNVF------PPTEDHV 129
+R L R KN KT ++ + Y +F + + V
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 130 RECLAS-CNTITQQMTTLHNITK-----MNDINTRLRFLVAYQVELALSGLFPLCAIFPF 183
E L I T+ + + ++ I LR L+ + + C
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-------YENC----- 246
Query: 184 GSSVNNFGKLGCDLDLVLQLDLQSQGD----NDQCRLMF--------------HCKSSLG 225
L LVL ++Q+ N C+++
Sbjct: 247 ---------L-----LVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 226 SERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPII-------------- 271
S TL E LL +L C LP +V R+ II
Sbjct: 292 DHHSMTLTPDEVKS-LLLKYL-DCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 272 -KYNHD--MSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPT 328
N D + +E S+ L ++ VF ++ PT
Sbjct: 348 KHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLS---------VFP-----PSAHI--PT 389
Query: 329 PGRWITNFSLTLLVLFYLQSVKVLPP--LKLLIDEASLKDRRISEDGVNCTFVRDITKLQ 386
LL L + +K + L SL +++ I +
Sbjct: 390 I----------LLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQ------PKESTISIPSIY 432
Query: 387 FHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGL 446
+ ++ +L + + +D ++ IP Y + + L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDD---------LIPPYLDQ--YFYSHIGHHL 481
Query: 447 NVSKNV-SFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELFKKQNLSEKAK 505
++ + ++ R + LE ++ + L+ K +
Sbjct: 482 KNIEHPERMTLFRMVFLDFR---F-LEQKIRHDSTAWNASGSILNTLQQLKFY---KP-- 532
Query: 506 SVFFSEKSRPKERMV-SVED-LFSTET----SEDS---QVPVEPDFKKRKPISAQTLKAV 556
+ + ER+V ++ D L E S+ + ++ + + + I + K V
Sbjct: 533 --YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE---DEAIFEEAHKQV 587
Query: 557 QK 558
Q+
Sbjct: 588 QR 589
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase,
transferase; HET: 3AT; 2.15A {Bos taurus} SCOP:
a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Length = 514
Score = 40.2 bits (93), Expect = 0.002
Identities = 56/342 (16%), Positives = 86/342 (25%), Gaps = 118/342 (34%)
Query: 176 PLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHL 235
IF FGS G D+D + D F+ L+
Sbjct: 93 VGGKIFTFGSYRLGVHTKGADIDALCVAP--RHVDRSDFFTSFY----------DKLKLQ 140
Query: 236 ETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMA 295
E V ++ + A VP+IK D +E D+ L +
Sbjct: 141 EEV-------------------KDLRAVEEAFVPVIKLCFD--GIEIDILFARLALQTIP 179
Query: 296 E--------LLYLFGEIDWR--------------------VRPLVFTIKKWAKDINLTNP 327
E LL R R + IK WAK N+ +
Sbjct: 180 EDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSN 239
Query: 328 TPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQF 387
G ++ S +LV Q
Sbjct: 240 ILG-FLGGVSWAMLVARTCQL--------------------------------------- 259
Query: 388 HPSIPEQSTDSLTTLLFGFFEFYSQYDFNN-----QGISLYLGSPIPKPEHGA------L 436
+TL+ FF +S++++ N Q L P+ P +
Sbjct: 260 ------YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLM 313
Query: 437 YINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSN 478
I P N + NVS + E + + S
Sbjct: 314 PIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSK 355
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase,
transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae}
SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A*
2o1p_A 2q66_A*
Length = 530
Score = 37.9 bits (87), Expect = 0.008
Identities = 30/209 (14%), Positives = 52/209 (24%), Gaps = 58/209 (27%)
Query: 176 PLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHL 235
IF +GS G D+D ++ + +
Sbjct: 80 AGGKIFTYGSYRLGVHGPGSDIDTLV----------------------VVPKHVTREDFF 117
Query: 236 ETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHD------------MSALECD 283
LL+ ++ + A VPIIK +
Sbjct: 118 TVFDSLLR---------ERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLS 168
Query: 284 LSMTNLTALYMAELLYLFGEIDWRV--------------RPLVFTIKKWAKDINLTNPTP 329
L++++ L + L RV R + IK WA+ +
Sbjct: 169 LTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIF 228
Query: 330 GRWITNFSLTLLVLFYLQSVKVLPPLKLL 358
G + +LV Q +L
Sbjct: 229 GFP-GGVAWAMLVARICQLYPNACSAVIL 256
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.51
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 227 ERSQTLRHLETVGDLLQLFLPGCSQLFLPG 256
E+ Q L+ L+ L+L+ + P
Sbjct: 18 EK-QALKKLQAS---LKLYADDSA----PA 39
Score = 29.5 bits (65), Expect = 1.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 15/36 (41%)
Query: 347 QSVKVLPPLKLLIDEASLKDRRISED-----GVNCT 377
Q++K KL +ASLK ++D + T
Sbjct: 20 QALK-----KL---QASLK--LYADDSAPALAIKAT 45
Score = 29.5 bits (65), Expect = 1.5
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 8/31 (25%)
Query: 418 QGI-----SLYLGSPIPKPEHGALYINNPLE 443
Q + SL L + P AL I +E
Sbjct: 20 QALKKLQASLKLYADDSAP---ALAIKATME 47
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 27.9 bits (62), Expect = 4.5
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 397 DSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPE 432
+S+ L+ + Y + L L P+P P
Sbjct: 100 NSIYALI----QHYREAHLRCAEFELRLTDPVPNPN 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,228,123
Number of extensions: 474320
Number of successful extensions: 900
Number of sequences better than 10.0: 1
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 26
Length of query: 563
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 464
Effective length of database: 3,937,614
Effective search space: 1827052896
Effective search space used: 1827052896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)